Citrus Sinensis ID: 013375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCLSPSCPFLL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcEEEcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVEssfaegfpenlgadCKLQETLNRAVELLPELwkladaprETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYcggetcppnlrsqmgssfvprnNIEEAILLLMILLRKVALKriewdpsilDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLlsgsedpkclPALLIASKIcgeypdlaeEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKtfssdkrfykvclspscpfll
Flexible Loop (DISEMBL)
MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALvsaarstnmrdLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTktfssdkrfyKVCLspscpfll
Low Complexity Region (SEG)
MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAilllmillRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCLSPSCPFLL
Disordered region (IsUnstruct)
***HAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCLSPSC****
Disordered Region (DISOPRED)
****AIS*LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ****************LSPSCPFLL
Disordered Region (DISEMBL)
MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCLSPSCPFLL
Disordered Region (DISPRO)
*SIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCLSPSCPFLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARxxxxxxxxxxxxxxxxxxxxxTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCLSPSCPFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	444	2.2.26 [Sep-21-2011]
Q86TV6	843	Tetratricopeptide repeat	yes	no	0.585	0.308	0.280	1e-07
Q9ULT0	858	Tetratricopeptide repeat	no	no	0.603	0.312	0.279	8e-05
Q8BGB2	858	Tetratricopeptide repeat	no	no	0.603	0.312	0.269	0.0001

>sp|Q86TV6|TTC7B_HUMAN Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 22/282 (7%)

Query: 132 FVPRNNIEEAILLLMI----LLRKVALKRIEWDPS-----------ILDHLSFAFSIAGD 176
           F P+ N EEA+LLL+I      R   L RI    S           + D L+ A    G 
Sbjct: 319 FCPQENTEEALLLLLISESMANRDAVLSRIPEHKSDRLISLQSASVVYDLLTIALGRRGQ 378

Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
              L+  +E  +         ++  AL    AG+   A+ +L+  +    D   +P  L+
Sbjct: 379 YEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIP--LL 436

Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
           A+K+C       EE   FA   ++ +G+   + ++     LG++ S Q+  A     +  
Sbjct: 437 AAKLCMGSLHWLEEAEKFAKTVVD-VGEKTSEFKAKGYLALGLTYSLQATDASLRGMQEV 495

Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
            Q KAL A    A S +  D    + L+L+ A  R++  A  Y +  L+L+G  +     
Sbjct: 496 LQRKALLAF-QRAHSLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQG-DDANSLH 553

Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398
           L+A +LSAQK Y DA  I++ AL +    E   LL +K K+Q
Sbjct: 554 LLALLLSAQKHYHDALNIIDMALSEYP--ENFILLFSKVKLQ 593

Homo sapiens (taxid: 9606)

>sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Homo sapiens GN=TTC7A PE=1 SV=3

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 25/293 (8%)

Query: 132 FVPRNNIEEAILLLMI----LLRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
           + P++NIEEA+LLL+I      R V L R+   E D         +I D LS      G 
Sbjct: 336 YCPKDNIEEALLLLLISESMATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQ 395

Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
              L+  +E  +         ++ +AL     G+   A++LLR  +        +P  L+
Sbjct: 396 YVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKLRPSDPTVP--LM 453

Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
           A+K+C       EE   FA   +  LG+   +        LG++ S Q+  A     +  
Sbjct: 454 AAKVCIGSLRWLEEAEHFAMMVI-SLGEEAGEFLPKGYLALGLTYSLQATDATLKSKQDE 512

Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
              KALQ L  A +        ILY +SL+ A  R++++A    +  LK+    +     
Sbjct: 513 LHRKALQTLERAQQLAPSDPQVILY-VSLQLALVRQISSAMEQLQEALKVR-KDDAHALH 570

Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
           L+A + SAQK ++ A  ++N A+  T   E   L+ TK K++ V   LKG  E
Sbjct: 571 LLALLFSAQKHHQHALDVVNMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 618

Homo sapiens (taxid: 9606)

>sp|Q8BGB2|TTC7A_MOUSE Tetratricopeptide repeat protein 7A OS=Mus musculus GN=Ttc7a PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 130/293 (44%), Gaps = 25/293 (8%)

Query: 132 FVPRNNIEEAILLLMI----LLRKVALKR-----------IEWDPSILDHLSFAFSIAGD 176
           + P++NIEEA+LLL+I      R V L R           ++   +I D LS      G 
Sbjct: 337 YCPKDNIEEALLLLLISESMATRDVVLSRAPEQAEDRKVSLQNASAIYDLLSITLGRRGQ 396

Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
              L+  +E  +         ++ +AL     G+   A++LLR  +        +P  L+
Sbjct: 397 YVMLSECLERAMKCAFGEFHLWYQVALSMVACGKSAYAVSLLRECMKLQPSDPTVP--LM 454

Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
           A+K+C       EE   FA+  +  LG+   +        LG++ S Q+  A     +  
Sbjct: 455 AAKVCIGSLHWLEEAEHFATVVI-GLGEEAGESLPKGYLALGLTYSLQATDATLKSKQDE 513

Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
              KALQ L   AR     D  I++ ++L+ A  R++++A    +  L +    +     
Sbjct: 514 LHRKALQTL-ERARELAPDDPQIIFYVALQLALVRQISSAMERLQEALTM-CRDDANALH 571

Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
           L+A + SAQK Y+ A  ++N A+  T   E   L+ TK K++ V   LKG  E
Sbjct: 572 LLALLFSAQKYYQHALDVINMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 619

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
255571250	736	calmodulin binding protein, putative [Ri	0.975	0.588	0.722	0.0
224070164	638	predicted protein [Populus trichocarpa]	0.986	0.686	0.703	1e-179
147798498	753	hypothetical protein VITISV_018246 [Viti	0.986	0.581	0.705	1e-177
356537136	714	PREDICTED: tetratricopeptide repeat prot	0.968	0.602	0.709	1e-175
356548083	712	PREDICTED: tetratricopeptide repeat prot	0.968	0.603	0.706	1e-174
449468572	734	PREDICTED: tetratricopeptide repeat prot	0.975	0.589	0.700	1e-174
297744181	696	unnamed protein product [Vitis vinifera]	0.986	0.629	0.707	1e-172
225438057	732	PREDICTED: tetratricopeptide repeat prot	0.986	0.598	0.707	1e-172
356503624	732	PREDICTED: tetratricopeptide repeat prot	0.975	0.591	0.683	1e-172
356572278	717	PREDICTED: tetratricopeptide repeat prot	0.975	0.603	0.681	1e-168

>gi|255571250|ref|XP_002526575.1| calmodulin binding protein, putative [Ricinus communis] gi|223534136|gb|EEF35853.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/433 (72%), Positives = 366/433 (84%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSIHA++LLLEA+FLKAK LQ LGRF EAAQSCKVILDIVE+S  EG PEN  ADCKLQE
Sbjct: 147 MSIHAVNLLLEAVFLKAKSLQHLGRFNEAAQSCKVILDIVETSLPEGLPENFAADCKLQE 206

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           T+N+AVELLPELWKLAD+PRE IMSYRR+LL  WNLDAETTA++QK+FAIFLLY GGE  
Sbjct: 207 TINKAVELLPELWKLADSPREAIMSYRRSLLHHWNLDAETTARIQKDFAIFLLYSGGEAS 266

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PPNLRSQM SSFVPRNN+EEAILLLMILLRKV+LKRIEWD SILDHLSFA S++GDL +L
Sbjct: 267 PPNLRSQMDSSFVPRNNVEEAILLLMILLRKVSLKRIEWDESILDHLSFALSVSGDLKAL 326

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q+EELLPGI+ R+E Y++LALCY+GAGEDLVALNLLR LL   EDPKC+PALL+ASKI
Sbjct: 327 ANQVEELLPGIVGRREMYYMLALCYHGAGEDLVALNLLRKLLHSREDPKCVPALLMASKI 386

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           CG  P LAEEG  ++ RALE L  GC+Q+ES  NCLLG+SLSA SK+ I D +R  RQ++
Sbjct: 387 CGNTPTLAEEGIKYSRRALENLESGCNQLESITNCLLGVSLSAHSKLLIADSERILRQSE 446

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           ALQ L  A ++T ++D  ILY L+LE A+QRKL  A +YAK LLKLE GSN+ GWLL+AR
Sbjct: 447 ALQVLELAGKTTQIQDPYILYHLTLESADQRKLEVALFYAKCLLKLENGSNINGWLLLAR 506

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQKRY DAETI++AALDQTGKW+QGELLRT+A++Q+ QGQLK A++TY  LLA LQV
Sbjct: 507 ILSAQKRYVDAETIISAALDQTGKWDQGELLRTRARLQIAQGQLKSAIKTYGQLLAILQV 566

Query: 421 QTKTFSSDKRFYK 433
           QTK+F S K+  K
Sbjct: 567 QTKSFGSAKKPLK 579

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070164|ref|XP_002303124.1| predicted protein [Populus trichocarpa] gi|222844850|gb|EEE82397.1| predicted protein [Populus trichocarpa]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 308/438 (70%), Positives = 366/438 (83%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSIHA SLL+EAIFLKAK LQ LGRF+EAAQSCKVI+DIVESSF+EG PEN  AD KLQE
Sbjct: 50  MSIHAASLLMEAIFLKAKSLQHLGRFREAAQSCKVIVDIVESSFSEGMPENFAADFKLQE 109

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TLN+AVELLPELWKLAD+PRE IMSYRRALL  WNLD ETTA++QK+FAIFLLY GGE  
Sbjct: 110 TLNKAVELLPELWKLADSPREAIMSYRRALLHHWNLDVETTARIQKDFAIFLLYSGGEAS 169

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PPNLRS M SSF P++NIEEAILLLMILLRK+ L RIEWDPSILDHLSFA S++G L +L
Sbjct: 170 PPNLRSLMDSSFAPKSNIEEAILLLMILLRKMILTRIEWDPSILDHLSFALSVSGSLKAL 229

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q+EELLPGII+R+ERYHIL+LCYYGAGE+LVAL+LLR LL  +EDPK +PALL+ASKI
Sbjct: 230 AGQVEELLPGIIDRRERYHILSLCYYGAGEELVALDLLRKLLHSNEDPKRVPALLMASKI 289

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           CG+    AEEG  +A RAL+ L + C+Q+ES AN LLG+SLSA S+VA+ D +R T+Q +
Sbjct: 290 CGKSSKHAEEGINYARRALQSLENDCNQLESVANYLLGVSLSAHSQVAVADSERFTKQYE 349

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           AL+AL SA R T M+D +ILY LSLE AEQRKL+ A YYAK LLKLE GS ++GWLL+AR
Sbjct: 350 ALEALESAGRMTKMQDSNILYHLSLENAEQRKLDVALYYAKHLLKLESGSTIRGWLLLAR 409

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQ+ Y+DAET++NAALDQTGKW+QGELLRTKAK+Q+ QGQL+  +E+Y  LLA LQ+
Sbjct: 410 ILSAQRLYKDAETVINAALDQTGKWDQGELLRTKAKLQIAQGQLENGIESYIQLLAVLQI 469

Query: 421 QTKTFSSDKRFYKVCLSP 438
           Q+K+     + YK   +P
Sbjct: 470 QSKSLGPGTKLYKDNGNP 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798498|emb|CAN65476.1| hypothetical protein VITISV_018246 [Vitis vinifera]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/438 (70%), Positives = 364/438 (83%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSIHA+SLLLEAIFLKAK LQGLGRFKEAAQSC VILDIVESS  EG   N G+DCKLQE
Sbjct: 165 MSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQE 224

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TLN+A+ELLPELWKLAD+P E I+SYRRALL  WN+D ET AK+QKEFAIFLLY GGE  
Sbjct: 225 TLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEAS 284

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PP LRSQM SSFVPRNNIEEAILLL+ILLRK++L++IEWDPSILDHLS+A S++G L +L
Sbjct: 285 PPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRAL 344

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q+EELLPG +NRKERYH LALCYYG G+ L ALN+L+ LLS +E+P  LPALL+ASKI
Sbjct: 345 ANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNMLKKLLSNAENPNYLPALLMASKI 404

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           CGE P+ AEEG +FA RAL+ L  GC++M S ANCLLGISLSA SK  + D +R +RQA+
Sbjct: 405 CGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAE 464

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           AL AL +A R   +RD  ++Y LSLE AEQRKL+AA YYAK  +KLEGGS++KGWLL+ R
Sbjct: 465 ALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTR 524

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQKR++DAE ++NAA+DQTGKW+QGELLRTKAK+Q+ +G+LK AVETYTHLLA LQV
Sbjct: 525 ILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQV 584

Query: 421 QTKTFSSDKRFYKVCLSP 438
           Q K+F S  +F K    P
Sbjct: 585 QRKSFGSGNKFLKGSGYP 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537136|ref|XP_003537086.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 307/433 (70%), Positives = 358/433 (82%), Gaps = 3/433 (0%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSIH++ LLLEA+FLKAK LQ L RFKEAAQSCKVILDIVESS  EG P+N GA+CKLQE
Sbjct: 128 MSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGMPDNFGAECKLQE 187

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TLN+AVELLPELWKLAD PRE I+SYRRALL  WNLDAET AK+QKEF +FLLY GGE  
Sbjct: 188 TLNKAVELLPELWKLADCPREAILSYRRALLHHWNLDAETIAKIQKEFVVFLLYSGGEAT 247

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PPNLRSQM  SFVPRNNIEEAILLLMILLRKV+L RIEWDPSILDHLSFA S++GDL++L
Sbjct: 248 PPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTAL 307

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q+EELLP  I+R ERY+ LALCYYGAG+DLVAL+LLR LL   ED   +P LL+ASKI
Sbjct: 308 ANQLEELLPATIHRSERYYALALCYYGAGKDLVALDLLRKLLRSREDQHHVPGLLMASKI 367

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           C E   LAEEG +FA R L+ L   C+Q+E+ AN  LG+SLSA SK+A +D +R  RQ++
Sbjct: 368 CCENSTLAEEGVSFAKRVLQNLDGRCNQLENHANFFLGVSLSAHSKLAASDSERLKRQSE 427

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           AL AL +A R   MR+  +LY LSLEYAEQRKL+AA YYAK  LKLEGGSN+KGWLL+AR
Sbjct: 428 ALHALETAGR---MRNPLVLYHLSLEYAEQRKLDAAFYYAKCFLKLEGGSNVKGWLLLAR 484

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQK++ DAE+I+N ALDQTGKW+QG+LLRTKAK+Q+ QGQL+ A+ETYT LLA LQ+
Sbjct: 485 ILSAQKQFLDAESIVNTALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQI 544

Query: 421 QTKTFSSDKRFYK 433
           Q+K F S K+ YK
Sbjct: 545 QSKGFGSGKKLYK 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548083|ref|XP_003542433.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 306/433 (70%), Positives = 358/433 (82%), Gaps = 3/433 (0%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSIH++ LLLEA+FLKAK LQ L RFKEAAQSCKVILDIVESS  EG P+N GA+CKLQE
Sbjct: 126 MSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGMPDNFGAECKLQE 185

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TLN+AVELLPELWKLAD PRE I+SYRRALL  WNLDAET AK+QKEFA+FLLY GGE  
Sbjct: 186 TLNKAVELLPELWKLADCPREAILSYRRALLHHWNLDAETIAKIQKEFAVFLLYSGGEAT 245

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PPNLRSQM  SFVPRNNIEEAILLLMILLRKV+L RIEWDPSILDHLSFA S++GDL++L
Sbjct: 246 PPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTAL 305

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q+EELLPG I+R ERY+ LALCYYG  +DLVAL+LLR LL   ED   +P LL+ASKI
Sbjct: 306 ANQLEELLPGTIHRSERYYALALCYYGTSKDLVALDLLRKLLRSREDQHHVPGLLMASKI 365

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           C E   LAEEG +FA + L+ L   C+Q+E+ AN  LG+SLSA SK+A++D DR  RQ++
Sbjct: 366 CCENSTLAEEGVSFAWQVLQNLDGRCNQLENHANFFLGVSLSAHSKLAVSDSDRFKRQSE 425

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           ALQAL +A R+ N     +LY LSLEYAEQRKL+AA YYAK  LKLEGGSN+KGWLL+AR
Sbjct: 426 ALQALETAGRTGNP---FVLYHLSLEYAEQRKLDAALYYAKCFLKLEGGSNVKGWLLLAR 482

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSA K++ DAE+I+N ALDQTGKW+QG+LLRTKAK+Q+ QGQL+ A+ETYT LLA LQ+
Sbjct: 483 ILSALKQFLDAESIINTALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQI 542

Query: 421 QTKTFSSDKRFYK 433
           Q+K F S K+ YK
Sbjct: 543 QSKGFGSGKKLYK 555

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468572|ref|XP_004151995.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Cucumis sativus] gi|449509059|ref|XP_004163481.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Cucumis sativus]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/434 (70%), Positives = 360/434 (82%), Gaps = 1/434 (0%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MS+HA+SLLLEAI LKAK L+GLGRF EAAQSCKVILDI+ESSF EG PEN GADCKLQE
Sbjct: 144 MSMHAVSLLLEAILLKAKSLEGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQE 203

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           T+ +AVELLPELWKLADA +E I+SYRRALL  WNLDAETTA++QKEFAIFLLY G E C
Sbjct: 204 TVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAETTARIQKEFAIFLLYSGSEAC 263

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PPNLRSQM SSFVP+NNIEEAILL MILLRKV LKRI+WDPSILDHLSFA  I+GD  +L
Sbjct: 264 PPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALIISGDTRAL 323

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A QIEEL PGI++R+E +H LALCYYGAGE+L ALNLLR +L   EDPK LPALL+ASKI
Sbjct: 324 AGQIEELPPGILHRQELHHALALCYYGAGENLTALNLLRKVLGSHEDPKSLPALLMASKI 383

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           CGE  DLAEEG + A RAL+ L   CDQ+E  ANCLLG+SLS  SK A  D ++ TRQ++
Sbjct: 384 CGENCDLAEEGTSIAHRALQNLDRECDQLEGVANCLLGVSLSVYSKSATADSEKFTRQSE 443

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           A++AL +A + T M D ++LY LSLEYA +RKL++A +YAK  LKLEGGSN+K WLL+AR
Sbjct: 444 AIEALEAARKKTRMTDSNVLYHLSLEYANERKLDSALHYAKKCLKLEGGSNIKTWLLLAR 503

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQKR+ D+E+I+NAALDQTGKW+Q ELL+TKAK+ + Q + KGA+ETY+ LLA  QV
Sbjct: 504 ILSAQKRFADSESIINAALDQTGKWDQAELLQTKAKLLIAQDEFKGAIETYSQLLAFFQV 563

Query: 421 QTKTFS-SDKRFYK 433
           Q+K+F+  DK+  K
Sbjct: 564 QSKSFNLGDKKLLK 577

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744181|emb|CBI37151.3| unnamed protein product [Vitis vinifera]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 310/438 (70%), Positives = 364/438 (83%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSIHA+SLLLEAIFLKAK LQGLGRFKEAAQSC VILDIVESS  EG   N G+DCKLQE
Sbjct: 108 MSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQE 167

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TLN+A+ELLPELWKLAD+P E I+SYRRALL  WN+D ET AK+QKEFAIFLLY GGE  
Sbjct: 168 TLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEAS 227

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PP LRSQM SSFVPRNNIEEAILLL+ILLRK++L++IEWDPSILDHLS+A S++G L +L
Sbjct: 228 PPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRAL 287

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q+EELLPG +NRKERYH LALCYYG G+ L ALNLL+ LLS +E+P  LPALL+ASKI
Sbjct: 288 ANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNLLKKLLSNAENPNYLPALLMASKI 347

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           CGE P+ AEEG +FA RAL+ L  GC++M S ANCLLGISLSA SK  + D +R +RQA+
Sbjct: 348 CGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAE 407

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           AL AL +A R   +RD  ++Y LSLE AEQRKL+AA YYAK  +KLEGGS++KGWLL+ R
Sbjct: 408 ALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTR 467

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQKR++DAE ++NAA+DQTGKW+QGELLRTKAK+Q+ +G+LK AVETYTHLLA LQV
Sbjct: 468 ILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQV 527

Query: 421 QTKTFSSDKRFYKVCLSP 438
           Q K+F S  +F K    P
Sbjct: 528 QRKSFGSGNKFLKGSGYP 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438057|ref|XP_002275620.1| PREDICTED: tetratricopeptide repeat protein 7B [Vitis vinifera]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 310/438 (70%), Positives = 364/438 (83%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSIHA+SLLLEAIFLKAK LQGLGRFKEAAQSC VILDIVESS  EG   N G+DCKLQE
Sbjct: 144 MSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQE 203

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TLN+A+ELLPELWKLAD+P E I+SYRRALL  WN+D ET AK+QKEFAIFLLY GGE  
Sbjct: 204 TLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEAS 263

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           PP LRSQM SSFVPRNNIEEAILLL+ILLRK++L++IEWDPSILDHLS+A S++G L +L
Sbjct: 264 PPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRAL 323

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q+EELLPG +NRKERYH LALCYYG G+ L ALNLL+ LLS +E+P  LPALL+ASKI
Sbjct: 324 ANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNLLKKLLSNAENPNYLPALLMASKI 383

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           CGE P+ AEEG +FA RAL+ L  GC++M S ANCLLGISLSA SK  + D +R +RQA+
Sbjct: 384 CGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAE 443

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           AL AL +A R   +RD  ++Y LSLE AEQRKL+AA YYAK  +KLEGGS++KGWLL+ R
Sbjct: 444 ALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTR 503

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQKR++DAE ++NAA+DQTGKW+QGELLRTKAK+Q+ +G+LK AVETYTHLLA LQV
Sbjct: 504 ILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQV 563

Query: 421 QTKTFSSDKRFYKVCLSP 438
           Q K+F S  +F K    P
Sbjct: 564 QRKSFGSGNKFLKGSGYP 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503624|ref|XP_003520607.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/433 (68%), Positives = 359/433 (82%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSI+ + LLLEAIFLKAKCLQ LGRFKE+AQ+CKVILDIVESS  EG P+N G + KLQE
Sbjct: 146 MSIYTVGLLLEAIFLKAKCLQVLGRFKESAQTCKVILDIVESSLPEGLPQNFGHEGKLQE 205

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TL + VELLPELWKLAD+PR+ I+SYRRALL  WNLDA+T AK+QKEF +FLLY GGE  
Sbjct: 206 TLGKVVELLPELWKLADSPRDVILSYRRALLHQWNLDAKTIAKIQKEFVVFLLYSGGEAI 265

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
           P NLRS M SSFVPRNN+EEAILLLMILLRK++L +IEWDPSILDHLSFA S++GDL++L
Sbjct: 266 PSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLTTL 325

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q EELLPG INR+ERYH L+LCYYGAG DLVALNLLR LLS  EDPK +P+LL+ASKI
Sbjct: 326 AHQWEELLPGTINRRERYHALSLCYYGAGNDLVALNLLRKLLSSREDPKHVPSLLMASKI 385

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           C E PDLA++GA+ A + LE L   CD++ES ++CLLG+SLSA SK+ I++ +R  +Q++
Sbjct: 386 CSENPDLAKDGASLARKVLENLDGRCDRLESLSSCLLGVSLSAHSKIDISNSERVEKQSE 445

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           AL +L +A++ T M +  ++Y LSLE AEQRKL+AA +YAK  L LE GSN+KGWLL+AR
Sbjct: 446 ALHSLETASKVTKMSNPLVIYYLSLECAEQRKLDAALHYAKCFLNLEVGSNIKGWLLLAR 505

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQK++ DAE+I+N AL+QTG W+QGELLRTKAK+Q+ QGQLK A+ETYT LLA L V
Sbjct: 506 ILSAQKQFLDAESIVNEALNQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLV 565

Query: 421 QTKTFSSDKRFYK 433
           Q KTF S K+ YK
Sbjct: 566 QRKTFGSKKKLYK 578

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572278|ref|XP_003554296.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/433 (68%), Positives = 357/433 (82%)

Query: 1   MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
           MSI+   LLLEAIFLKAKCLQ LGRFKEAAQ+CKVILDIVESS  EG P+N G + KLQE
Sbjct: 131 MSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDIVESSLPEGLPQNFGDEGKLQE 190

Query: 61  TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
           TL++ VELLPELWKLAD+PR+ I+SYRRALL   NLDA+T AK+QKEF +FLLY GGE  
Sbjct: 191 TLSKVVELLPELWKLADSPRDVILSYRRALLHRRNLDAKTIAKIQKEFVVFLLYSGGEAI 250

Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
             NLRS M SSFVPRNN+EEAILLLMILLRK++L +IEWDPSILDHLSFA S++GDL++L
Sbjct: 251 LSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLTAL 310

Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
           A Q EELLPG INR+ERYH L+LCYYGAG DLVALNLLR LLS  EDPK +P+LL+ASKI
Sbjct: 311 AHQWEELLPGTINRRERYHALSLCYYGAGNDLVALNLLRKLLSSREDPKHVPSLLMASKI 370

Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
           C   PDLA++GA+ A + LE L   CDQ+ES ++CLLG+SLSA SK+AI++ +R  +Q++
Sbjct: 371 CSMNPDLAKDGASLACKVLENLDGRCDQLESLSSCLLGVSLSAHSKIAISNSERVEKQSE 430

Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
           AL +L +A++ T MR+  ++Y LSLE AEQRKL+ A +YAK  L LE GSN+KGWLL+AR
Sbjct: 431 ALHSLETASKVTRMRNPPVIYYLSLECAEQRKLDVALHYAKCFLNLEAGSNIKGWLLLAR 490

Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
           ILSAQK++ DAE+I++ AL+QTG W+QGELLRTKAK+Q+ QGQLK A+ETYT LLA L V
Sbjct: 491 ILSAQKQFLDAESIVDEALNQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLV 550

Query: 421 QTKTFSSDKRFYK 433
           Q KTF S K+ YK
Sbjct: 551 QRKTFGSKKKLYK 563

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2139860	739	NPGR2 "AT4G28600" [Arabidopsis	0.966	0.580	0.605	1.5e-131
TAIR|locus:2053707	704	NPG1 "no pollen germination 1"	0.948	0.598	0.482	2.2e-98
TAIR|locus:2016029	694	NPGR1 "no pollen germination r	0.945	0.605	0.396	3.9e-76
ZFIN|ZDB-GENE-070105-3	844	ttc7b "tetratricopeptide repea	0.590	0.310	0.290	2.8e-10
UNIPROTKB|E1C895	857	E1C895 "Uncharacterized protei	0.898	0.465	0.230	3.6e-10
UNIPROTKB|E1BDL2	858	TTC7A "Uncharacterized protein	0.641	0.332	0.264	1.6e-08
UNIPROTKB|Q9ULT0	858	TTC7A "Tetratricopeptide repea	0.639	0.331	0.263	5.7e-08
MGI|MGI:1920999	858	Ttc7 "tetratricopeptide repeat	0.639	0.331	0.249	7.3e-08
UNIPROTKB|F5H4E1	504	TTC7A "Tetratricopeptide repea	0.572	0.503	0.263	2e-07
UNIPROTKB|F1PM89	760	TTC7A "Uncharacterized protein	0.603	0.352	0.262	3.6e-07

TAIR|locus:2139860 NPGR2 "AT4G28600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 262/433 (60%), Positives = 333/433 (76%)

Query:     1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
             MS HA+SLL EAIFLKAK LQ LGRF+EAA+SC+VILDIVE+S AEG  +N+  D KLQE
Sbjct:   153 MSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRVILDIVETSLAEGASDNVTGDIKLQE 212

Query:    61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
             TL +AVELLPELWKLAD+PR+ I+SYRRALL  W LD ETTA++QKE+A+FLLY G E  
Sbjct:   213 TLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPETTARIQKEYAVFLLYSGEEAV 272

Query:   121 PPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
             PPNLRSQ   SF+PRNN+EEA        RKV LKRI WD +ILDHLSFA +IAGDL++L
Sbjct:   273 PPNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAILDHLSFALTIAGDLTAL 332

Query:   181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
             A Q EEL P +++++E YH L+LCY GAGE LVAL LLR L S  EDP     LL+ASKI
Sbjct:   333 AKQFEELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSEREDPNRTSGLLMASKI 392

Query:   241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
             CGE   LAEEG  +A +A+  LG  C Q++  A  +LGI+L+  S++A+T+ +R  RQ++
Sbjct:   393 CGERSGLAEEGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTETERIARQSE 452

Query:   301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
              +QAL SA   TN R   +++RL+LE AEQRKL++A  YAK  LKL   S+L+ WLL+AR
Sbjct:   453 GIQALESADM-TNPR---VVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLAR 508

Query:   361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
             +LSAQKR+ DAETI++AAL++TGKWEQG+LLR KAK++L +G++K A++TYT LLA LQV
Sbjct:   509 VLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQV 568

Query:   421 QTKTFSSDKRFYK 433
             Q+K+F+S K+  K
Sbjct:   569 QSKSFNSAKKLPK 581

GO:0005516 "calmodulin binding" evidence=ISS;TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2053707 NPG1 "no pollen germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 206/427 (48%), Positives = 284/427 (66%)

Query:     1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
             +S HA +L+LEAI+LKAK LQ LGR  EAA  CK +LD VE  F +G P+    D KLQE
Sbjct:   116 VSQHAANLVLEAIYLKAKSLQKLGRITEAAHECKSVLDSVEKIFQQGIPD-AQVDNKLQE 174

Query:    61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
             T++ AVELLP LWK +   +E I +YRRALL  WNLD +  A++QK+FA+FLL+ G E  
Sbjct:   175 TVSHAVELLPALWKESGDYQEAISAYRRALLSQWNLDNDCCARIQKDFAVFLLHSGVEAS 234

Query:   121 PPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
             PP+L SQ+  S++PRNNIEEA        +K  L + +WDPS+ +HL+FA S+    + L
Sbjct:   235 PPSLGSQIEGSYIPRNNIEEAILLLMILLKKFNLGKAKWDPSVFEHLTFALSLCSQTAVL 294

Query:   181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
             A Q+EE++PG+ +R ER++ LAL Y  AG++  A+NLLR  L   E P  L ALL+A+K+
Sbjct:   295 AKQLEEVMPGVFSRIERWNTLALSYSAAGQNSAAVNLLRKSLHKHEQPDDLVALLLAAKL 354

Query:   241 CGEYPDLAEEGATFASRALECLGDGCDQ-MESTANCLLGISLSAQSKVAITDFDRATRQA 299
             C E P LA EG  +A RA+     G D+ ++     +LG+ L  Q+KV  +DF+R+  Q+
Sbjct:   355 CSEEPSLAAEGTGYAQRAINN-AQGMDEHLKGVGLRMLGLCLGKQAKVPTSDFERSRLQS 413

Query:   300 KALQALVSA-ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358
             ++L+AL  A A   N  DL  ++ L ++YAEQR L AA  YAK  +   GGS LKGW  +
Sbjct:   414 ESLKALDGAIAFEHNNPDL--IFELGVQYAEQRNLKAASRYAKEFIDATGGSVLKGWRFL 471

Query:   359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418
             A +LSAQ+R+ +AE + +AALD+T KW+QG LLR KAK+++ Q     AVETY +LLA +
Sbjct:   472 ALVLSAQQRFSEAEVVTDAALDETAKWDQGPLLRLKAKLKISQSNPTEAVETYRYLLALV 531

Query:   419 QVQTKTF 425
             Q Q K+F
Sbjct:   532 QAQRKSF 538

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2016029 NPGR1 "no pollen germination related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 173/436 (39%), Positives = 256/436 (58%)

Query:     1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
             MS+H++SLLLEAI LKA+ L+ LG +KEAA+ CK+ILD+VE++   G P+ +    KLQ+
Sbjct:   126 MSMHSVSLLLEAILLKARSLEELGSYKEAAEECKIILDVVENALPSGMPDGISGFAKLQD 185

Query:    61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
                +A+ELLP LWK A    ETI SYRRAL   WNLD +  A  QK  A+ LLY   E C
Sbjct:   186 IFQKALELLPLLWKKAGNHHETIASYRRALSRPWNLDPQRLAVTQKSLALVLLYGSVEAC 245

Query:   121 PPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
             P             ++NIEEA        +K+ +  I+WDP ++DHL++A S+ G    L
Sbjct:   246 P-------------KDNIEEAIVLLMLLVKKMVVGDIQWDPELMDHLTYALSMTGQFEVL 292

Query:   181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC--LPALLIAS 238
             A  +E+ LPG+  R ER+++L+LCY  AG D  A+NLL+  L  SE  +   +P LL  +
Sbjct:   293 ANYLEQTLPGVYTRGERWYLLSLCYSAAGIDKAAINLLKMALGPSESRQIPHIPLLLFGA 352

Query:   239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298
             K+C + P  + +G  FA R L+      + + S A+  LG+     ++ +  D +R   Q
Sbjct:   353 KLCSKDPKHSRDGINFAHRLLDLGNSQSEHLLSQAHKFLGVCYGNAARSSKLDSERVFLQ 412

Query:   299 AKALQALVSAA-RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL 357
              K+L +L  AA R     +L +++ LS+E A QR + AA   A     + GG + KGW  
Sbjct:   413 KKSLFSLNEAAKRGKADPELDVIFNLSVENAVQRNVQAALDGAVEYSSMVGGVSTKGWKH 472

Query:   358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417
             +A +LSA+KR +DAE+IL+  +++ G  E+ ELLR KA +Q+ Q Q K A++T + LL  
Sbjct:   473 LAIVLSAEKRLKDAESILDFTMEEAGDIEKIELLRLKAVLQMAQEQPKKAMKTCSSLLGL 532

Query:   418 LQVQTKTFSSDKRFYK 433
             ++ Q K+  S+    K
Sbjct:   533 IRAQEKSEQSESLLQK 548

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=ISS;TAS

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-070105-3 ttc7b "tetratricopeptide repeat domain 7B" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 84/289 (29%), Positives = 133/289 (46%)

Query:   132 FVPRNNIEEAXX----XXXXXXRKVALKRI-EWDPSILDHLSFAFSIAGDLSSLATQIE- 185
             F P+ N EEA            R   L RI E +   +  L  A S+  DL ++A     
Sbjct:   320 FCPQENTEEALLLLLISESMANRDAVLSRIPEHNNDRIISLQSA-SLVYDLLTIALGRRG 378

Query:   186 --ELLPGIINRK-----ERYHI---LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235
               E+L   + R      E +H+   LAL    AG+   A+ +L+  +    D   +P  L
Sbjct:   379 QYEMLSECLERAMKFAFEEFHLWFQLALSLMAAGKSARAVKVLKECIRLKPDDPTIP--L 436

Query:   236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295
             +A K+C       EEG  FA   ++ +G+   +  +     +G+  S ++  A     + 
Sbjct:   437 LAVKLCIGNLHWLEEGERFAKIVID-MGEKAAEFRAKGYLAIGLVYSLKATDASLRGMQE 495

Query:   296 TRQAKALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354
               Q KAL A    A+S +  D L++ Y L+L+ A  R++  A  Y +  L+L+G  ++  
Sbjct:   496 EYQKKALSAF-QRAQSLSPTDHLAVFY-LALQLAISRQIPEALGYVRQALQLQG-DDVHS 552

Query:   355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ-LVQG 402
               L+A +LSAQK Y DA  I+  AL +    E   LL TK K++ L +G
Sbjct:   553 LHLLALLLSAQKHYHDALNIIEMALSEYP--ENFILLFTKVKLETLCRG 599

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C895 E1C895 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 96/417 (23%), Positives = 167/417 (40%)

Query:     6 ISLLLEAIFLKAKCLQ-GLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNR 64
             +S  LEA    A       G   +  +S + +L  VE+   + F   L + C   E  N 
Sbjct:   231 LSYFLEAALQSAYVTHLKKGNIVKGVRSLREVLRTVETKATQTFKMMLLSQCNWGELYNT 290

Query:    65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNL 124
               E     W     P       + ++     L     + L K  +++  +         L
Sbjct:   291 LGEECYS-WGPCSMPTSEFSHVQESMFA---LKQSRGSHLSKSTSLYCGFYNNFLFEVVL 346

Query:   125 RSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPS-ILDHLSFAFSIAGDLSSLATQ 183
                   S   R+ +  +        R V+L+    D S + D LS      G    L+  
Sbjct:   347 MVLFSVSHANRDAVI-SRAPDQQDDRAVSLR----DASEVYDLLSITLGRRGQYVMLSEC 401

Query:   184 IEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243
             +E  +    +    ++ LAL     G+   A+++L+           +P  L+A+K+C  
Sbjct:   402 LERAMKFAFDEFHLWYQLALSMVACGKSAYAVSVLKECAKLRPTDPTVP--LLAAKVCIG 459

Query:   244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303
                  EEG  FA   ++ LG+   +  +     LG++ S Q+  A     +     KALQ
Sbjct:   460 SLHWLEEGEYFAKMVID-LGEDAGESLAKGYLALGLTYSLQATDATLKSTQDEYNKKALQ 518

Query:   304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363
              L   AR  +  D  I+  LSL+ A  R+++ A  + +  L+L    ++    L+A + S
Sbjct:   519 TL-ERARELDREDHQIILYLSLQLALVRQISDAIEHLQEALQL-CKDDMNSLHLLALLFS 576

Query:   364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
             AQK Y+ A  ++N A+ +    E   LL TK K++ +    + A+ T  H+L   Q+
Sbjct:   577 AQKHYQHALEVINMAVAEYP--ESFSLLFTKVKLEWMHKGPEEALVTCRHMLQMWQM 631

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

UNIPROTKB|E1BDL2 TTC7A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 82/310 (26%), Positives = 129/310 (41%)

Query:   132 FVPRNNIEEAXX----XXXXXXRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
             + P++NIEEA            R V L R    E D         +I D LS      G 
Sbjct:   336 YCPKDNIEEALLLLLISESMATRDVVLSRTPEQEEDRAVSLQNAAAIYDLLSITLGRRGQ 395

Query:   177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
                L+  +E  +         ++ +AL     G+   A++LLR  +        +P  L+
Sbjct:   396 YVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSSYAVSLLRECVKLRPSDPTVP--LM 453

Query:   237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
             A+K+C       EE   FA   +  LG+   +  S     LG++ S Q+  A     +  
Sbjct:   454 AAKVCIGSLHWLEEAERFAMMVIH-LGEEAGEFLSKGYLALGLTYSLQATDATLKSKQDE 512

Query:   297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
                KALQ L  A +        ILY +SL+ A  R++++A    +  LK+    +     
Sbjct:   513 LHRKALQTLERAQQLAPGDPQVILY-VSLQLALVRQISSAMEQLQEALKV-CKDDANALH 570

Query:   357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416
             L+A + SAQK Y+ A  ++N A+ +    E   L+ TK K++ V   LKG  E       
Sbjct:   571 LLALLFSAQKHYQHALDVINMAITEYP--ENFNLMFTKVKLEQV---LKGPEEALVTCRQ 625

Query:   417 ALQVQTKTFS 426
              LQ+    +S
Sbjct:   626 MLQLWQTLYS 635

GO:0030097 "hemopoiesis" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

UNIPROTKB|Q9ULT0 TTC7A "Tetratricopeptide repeat protein 7A" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 82/311 (26%), Positives = 131/311 (42%)

Query:   132 FVPRNNIEEAXX----XXXXXXRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
             + P++NIEEA            R V L R+   E D         +I D LS      G 
Sbjct:   336 YCPKDNIEEALLLLLISESMATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQ 395

Query:   177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
                L+  +E  +         ++ +AL     G+   A++LLR  +        +P  L+
Sbjct:   396 YVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKLRPSDPTVP--LM 453

Query:   237 ASKIC-GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295
             A+K+C G    L EE   FA   +  LG+   +        LG++ S Q+  A     + 
Sbjct:   454 AAKVCIGSLRWL-EEAEHFAMMVIS-LGEEAGEFLPKGYLALGLTYSLQATDATLKSKQD 511

Query:   296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355
                 KALQ L  A +        ILY +SL+ A  R++++A    +  LK+    +    
Sbjct:   512 ELHRKALQTLERAQQLAPSDPQVILY-VSLQLALVRQISSAMEQLQEALKVRK-DDAHAL 569

Query:   356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415
              L+A + SAQK ++ A  ++N A+  T   E   L+ TK K++ V   LKG  E      
Sbjct:   570 HLLALLFSAQKHHQHALDVVNMAI--TEHPENFNLMFTKVKLEQV---LKGPEEALVTCR 624

Query:   416 AALQVQTKTFS 426
               L++    +S
Sbjct:   625 QVLRLWQTLYS 635

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

MGI|MGI:1920999 Ttc7 "tetratricopeptide repeat domain 7" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 74/297 (24%), Positives = 126/297 (42%)

Query:   113 LYCGGETCPPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFS 172
             LYC  +     L   + S  +   ++  +        RKV+L+      +I D LS    
Sbjct:   336 LYCPKDNIEEALLLLLISESMATRDVVLSRAPEQAEDRKVSLQNAS---AIYDLLSITLG 392

Query:   173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232
               G    L+  +E  +         ++ +AL     G+   A++LLR  +        +P
Sbjct:   393 RRGQYVMLSECLERAMKCAFGEFHLWYQVALSMVACGKSAYAVSLLRECMKLQPSDPTVP 452

Query:   233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292
               L+A+K+C       EE   FA+  +  LG+   +        LG++ S Q+  A    
Sbjct:   453 --LMAAKVCIGSLHWLEEAEHFATVVIG-LGEEAGESLPKGYLALGLTYSLQATDATLKS 509

Query:   293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352
              +     KALQ L   AR     D  I++ ++L+ A  R++++A    +  L +    + 
Sbjct:   510 KQDELHRKALQTL-ERARELAPDDPQIIFYVALQLALVRQISSAMERLQEALTM-CRDDA 567

Query:   353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
                 L+A + SAQK Y+ A  ++N A+  T   E   L+ TK K++ V   LKG  E
Sbjct:   568 NALHLLALLFSAQKYYQHALDVINMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 619

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

UNIPROTKB|F5H4E1 TTC7A "Tetratricopeptide repeat protein 7A" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 70/266 (26%), Positives = 115/266 (43%)

Query:   162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTL 221
             +I D LS      G    L+  +E  +         ++ +AL     G+   A++LLR  
Sbjct:    27 AIYDLLSITLGRRGQYVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLREC 86

Query:   222 LSGSEDPKCLPALLIASKIC-GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280
             +        +P  L+A+K+C G    L EE   FA   +  LG+   +        LG++
Sbjct:    87 VKLRPSDPTVP--LMAAKVCIGSLRWL-EEAEHFAMMVIS-LGEEAGEFLPKGYLALGLT 142

Query:   281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYA 340
              S Q+  A     +     KALQ L  A +        ILY +SL+ A  R++++A    
Sbjct:   143 YSLQATDATLKSKQDELHRKALQTLERAQQLAPSDPQVILY-VSLQLALVRQISSAMEQL 201

Query:   341 KMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400
             +  LK+    +     L+A + SAQK ++ A  ++N A+  T   E   L+ TK K++ V
Sbjct:   202 QEALKVRK-DDAHALHLLALLFSAQKHHQHALDVVNMAI--TEHPENFNLMFTKVKLEQV 258

Query:   401 QGQLKGAVETYTHLLAALQVQTKTFS 426
                LKG  E        L++    +S
Sbjct:   259 ---LKGPEEALVTCRQVLRLWQTLYS 281

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

UNIPROTKB|F1PM89 TTC7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 77/293 (26%), Positives = 124/293 (42%)

Query:   132 FVPRNNIEEAXX----XXXXXXRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
             + P++NIEEA            R V L R    E D         +I D LS      G 
Sbjct:   238 YCPKDNIEEALLLLLISESMATRDVVLSRAPEQEEDRAVSLRNAAAIYDLLSITLGRRGQ 297

Query:   177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
                L+  +E  +         ++ +AL     G+   A++LLR  +        +P  L+
Sbjct:   298 YVMLSECLERAMKFAFEEFHLWYQVALSMVACGKSAYAVSLLRECMKLRPSDPTVP--LM 355

Query:   237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
             A+K+C       EE   FA   ++ L +   +  S     LG++ S Q+  A     +  
Sbjct:   356 AAKVCIGSLHWLEEAERFAMMVID-LREEAGEFLSKGYLALGLTYSLQATDATLKSKQDE 414

Query:   297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
                KALQ L  A +        ILY +SL+ A  R++++A    +  LK+    +     
Sbjct:   415 LHRKALQTLQRAQQLAPGDPQVILY-VSLQLALVRQISSAIEQLQEALKV-CRDDANALH 472

Query:   357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
             L+A + SAQK Y+ A  ++N A+ +    E   L+ +K K++ V   LKG  E
Sbjct:   473 LLALLFSAQKHYQHALDVINMAITEYP--ENFNLMFSKVKLEQV---LKGPEE 520

GO:0030097 "hemopoiesis" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.94
KOG1126	638	consensus DNA-binding cell division cycle control	99.92
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.92
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.9
PRK12370	553	invasion protein regulator; Provisional	99.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.89
KOG1125	579	consensus TPR repeat-containing protein [General f	99.89
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.89
PRK11189	296	lipoprotein NlpI; Provisional	99.88
PRK11189	296	lipoprotein NlpI; Provisional	99.88
PRK12370	553	invasion protein regulator; Provisional	99.88
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.86
KOG1125	579	consensus TPR repeat-containing protein [General f	99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.84
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.84
PLN02789	320	farnesyltranstransferase	99.84
KOG2076	895	consensus RNA polymerase III transcription factor	99.83
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.83
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.82
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.82
KOG2003	840	consensus TPR repeat-containing protein [General f	99.82
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.81
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.8
PLN02789	320	farnesyltranstransferase	99.8
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
KOG1129	478	consensus TPR repeat-containing protein [General f	99.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.79
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.79
KOG2076	895	consensus RNA polymerase III transcription factor	99.78
KOG1129	478	consensus TPR repeat-containing protein [General f	99.77
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.75
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.75
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.72
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.72
KOG2003	840	consensus TPR repeat-containing protein [General f	99.71
PLN03218	1060	maturation of RBCL 1; Provisional	99.71
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.7
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.69
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.69
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.68
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.68
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.67
PLN03218	1060	maturation of RBCL 1; Provisional	99.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.67
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PLN03077	857	Protein ECB2; Provisional	99.64
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.62
PLN03077	857	Protein ECB2; Provisional	99.6
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.58
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.55
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.53
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.53
KOG0553	304	consensus TPR repeat-containing protein [General f	99.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.51
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.49
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.45
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.45
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.45
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.44
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.43
PRK04841	903	transcriptional regulator MalT; Provisional	99.41
KOG0553	304	consensus TPR repeat-containing protein [General f	99.38
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.34
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.34
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.33
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.33
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.3
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.3
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.3
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.28
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.27
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.26
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.26
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.26
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.25
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.23
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.21
PRK04841	903	transcriptional regulator MalT; Provisional	99.21
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.2
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.2
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.19
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.18
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.17
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.15
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.14
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.13
PRK11906	458	transcriptional regulator; Provisional	99.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.11
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.08
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.07
PRK11906	458	transcriptional regulator; Provisional	99.06
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.05
PF12688	120	TPR_5: Tetratrico peptide repeat	99.01
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.99
PRK15331	165	chaperone protein SicA; Provisional	98.98
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.98
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.98
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.97
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.96
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.95
PRK10803	263	tol-pal system protein YbgF; Provisional	98.93
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.93
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.91
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.9
PRK10803	263	tol-pal system protein YbgF; Provisional	98.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.88
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.86
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.86
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.85
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.85
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.83
PF13371	73	TPR_9: Tetratricopeptide repeat	98.83
PF12688	120	TPR_5: Tetratrico peptide repeat	98.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.83
PF13371	73	TPR_9: Tetratricopeptide repeat	98.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.79
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.78
KOG4234	271	consensus TPR repeat-containing protein [General f	98.76
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.75
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.7
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.7
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.7
PRK15331	165	chaperone protein SicA; Provisional	98.69
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.67
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.66
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.59
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.57
KOG4555	175	consensus TPR repeat-containing protein [Function	98.56
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.49
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.46
PF13512	142	TPR_18: Tetratricopeptide repeat	98.46
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.46
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.42
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.42
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.41
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.4
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.39
KOG4234	271	consensus TPR repeat-containing protein [General f	98.37
KOG4555	175	consensus TPR repeat-containing protein [Function	98.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.35
PF13512	142	TPR_18: Tetratricopeptide repeat	98.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.32
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.3
PF13431	34	TPR_17: Tetratricopeptide repeat	98.27
PF13428	44	TPR_14: Tetratricopeptide repeat	98.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.27
PF13428	44	TPR_14: Tetratricopeptide repeat	98.27
PF13431	34	TPR_17: Tetratricopeptide repeat	98.19
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.17
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.16
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.13
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.11
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.04
KOG2471	696	consensus TPR repeat-containing protein [General f	98.04
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.91
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.85
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.84
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.83
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.78
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.77
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.75
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.71
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.68
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.66
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.64
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.63
KOG1586	288	consensus Protein required for fusion of vesicles	97.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.62
KOG1586	288	consensus Protein required for fusion of vesicles	97.61
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.59
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.55
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.55
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.52
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.52
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.48
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.45
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.43
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.43
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.41
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.3
KOG1585	308	consensus Protein required for fusion of vesicles	97.3
KOG1585	308	consensus Protein required for fusion of vesicles	97.23
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.19
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.15
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.13
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.07
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.04
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.04
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.99
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.97
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.95
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.87
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.87
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.86
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.85
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.78
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.77
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.77
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.74
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.7
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.69
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.59
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.55
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.55
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.54
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.53
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.52
PRK10941	269	hypothetical protein; Provisional	96.51
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.45
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.41
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.39
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.25
KOG3364	149	consensus Membrane protein involved in organellar	96.21
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.18
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.18
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.17
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.09
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.07
PRK10941	269	hypothetical protein; Provisional	96.01
KOG2471	696	consensus TPR repeat-containing protein [General f	95.99
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.91
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.9
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.88
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.86
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.85
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.82
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.72
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.64
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.45
KOG1258	577	consensus mRNA processing protein [RNA processing	95.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.21
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.13
KOG1310	758	consensus WD40 repeat protein [General function pr	95.08
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.95
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.95
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.82
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.56
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.5
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.48
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.47
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.47
COG4941	415	Predicted RNA polymerase sigma factor containing a	94.47
KOG3364	149	consensus Membrane protein involved in organellar	94.46
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.43
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	94.33
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.29
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.2
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.08
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.05
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.02
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.67
COG4941	415	Predicted RNA polymerase sigma factor containing a	93.56
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.41
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.36
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.96
KOG1310	758	consensus WD40 repeat protein [General function pr	92.84
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.68
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.65
KOG2422	665	consensus Uncharacterized conserved protein [Funct	92.46
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.38
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.3
COG2912	269	Uncharacterized conserved protein [Function unknow	92.27
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.22
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.1
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.05
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.94
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.77
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.69
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.64
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.59
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.5
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.34
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.25
KOG1258	577	consensus mRNA processing protein [RNA processing	91.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	90.82
KOG2041	1189	consensus WD40 repeat protein [General function pr	90.79
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.76
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.68
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	90.66
COG2912	269	Uncharacterized conserved protein [Function unknow	90.49
KOG4014	248	consensus Uncharacterized conserved protein (conta	90.42
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.23
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.97
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.84
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.7
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	88.19
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.14
PRK11619	644	lytic murein transglycosylase; Provisional	88.14
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.83
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.66
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.53
COG3947	361	Response regulator containing CheY-like receiver a	86.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.88
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.74
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.32
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.83
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	84.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	84.32
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	83.84
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	83.45
KOG3783	546	consensus Uncharacterized conserved protein [Funct	83.16
PRK12798	421	chemotaxis protein; Reviewed	83.09
COG3947	361	Response regulator containing CheY-like receiver a	82.76
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	82.61
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	81.76
KOG2581	493	consensus 26S proteasome regulatory complex, subun	80.93
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.62
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	80.26

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=337.52  Aligned_cols=369  Identities=17%  Similarity=0.076  Sum_probs=325.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013375            3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET   82 (444)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA   82 (444)
                      +|..-.++|++-+.|..+.+.|++++|+..|+.+|+.        .|.           +.+|+-.+|.++..+|+.++|
T Consensus       109 ~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~-----------fida~inla~al~~~~~~~~a  169 (966)
T KOG4626|consen  109 IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPK-----------FIDAYINLAAALVTQGDLELA  169 (966)
T ss_pred             hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------Cch-----------hhHHHhhHHHHHHhcCCCccc
Confidence            4455578999999999999999999999999999987        233           346788888999999999999


Q ss_pred             HHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCC-----------CCCccc---cccCccccCCCcHHHHHHHHHHH
Q 013375           83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGET-----------CPPNLR---SQMGSSFVPRNNIEEAILLLMIL  148 (444)
Q Consensus        83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~eAi~~l~~~  148 (444)
                      ...|..+|++    +|+..- ....++.++-..|.-.           ..|+..   ++++.+|..+|+...||.-+   
T Consensus       170 ~~~~~~alql----nP~l~c-a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y---  241 (966)
T KOG4626|consen  170 VQCFFEALQL----NPDLYC-ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHY---  241 (966)
T ss_pred             HHHHHHHHhc----Ccchhh-hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHH---
Confidence            9999999999    554321 1233444333222221           133332   46788999999999999875   


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013375          149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP  228 (444)
Q Consensus       149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P  228 (444)
                        +.+++.+|+.+++|.+||++|...+.+++|+.+|.+|+.+.|+++.++-++|.+|+.+|..+-|+..|++||  .++|
T Consensus       242 --~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral--~~~P  317 (966)
T KOG4626|consen  242 --EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL--ELQP  317 (966)
T ss_pred             --HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH--hcCC
Confidence              556789999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375          229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA  308 (444)
Q Consensus       229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a  308 (444)
                      +.+.++.+++.. +...|+..||+.+|.++|...|.+     +.+.++||.+|..+           +..++|...|+++
T Consensus       318 ~F~~Ay~NlanA-Lkd~G~V~ea~~cYnkaL~l~p~h-----adam~NLgni~~E~-----------~~~e~A~~ly~~a  380 (966)
T KOG4626|consen  318 NFPDAYNNLANA-LKDKGSVTEAVDCYNKALRLCPNH-----ADAMNNLGNIYREQ-----------GKIEEATRLYLKA  380 (966)
T ss_pred             CchHHHhHHHHH-HHhccchHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHh-----------ccchHHHHHHHHH
Confidence            999999988765 577899999999999999976654     67899999999776           5689999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375          309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       309 l~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~  388 (444)
                      + +..|+.+.++.|||.+|.++|++++|+.+|+.|++++|.. ++++.++|.+|..+|+.++|+++|.+||..+|  ..+
T Consensus       381 l-~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP--t~A  456 (966)
T KOG4626|consen  381 L-EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP--TFA  456 (966)
T ss_pred             H-hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--HHH
Confidence            9 9999999999999999999999999999999999999999 69999999999999999999999999999999  899


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +++.++|.++...|+..+|+..|+++|.+.||-.+
T Consensus       457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence            99999999999999999999999999999997665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-40  Score=318.76  Aligned_cols=378  Identities=18%  Similarity=0.118  Sum_probs=319.7

Q ss_pred             HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhc----------CCC-CC----CCCccccHHHHHHHHHHHHHHHHHHhC
Q 013375           13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFA----------EGF-PE----NLGADCKLQETLNRAVELLPELWKLAD   77 (444)
Q Consensus        13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------~~~-~~----~~~~~~~l~~~~~~a~~~l~~~~~~~g   77 (444)
                      ....+--.++.|+|++|++-|.++-+..+...+          ++. .+    ....-++..+...+++-.+|+++...|
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            345566778899999999999987544322110          000 00    001123445557889999999999999


Q ss_pred             ChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCC-----------CCc---cccccCccccCCCcHHHHHH
Q 013375           78 APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC-----------PPN---LRSQMGSSFVPRNNIEEAIL  143 (444)
Q Consensus        78 ~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~eAi~  143 (444)
                      ++++|+..|+.++++    +|+....+ -++|..+..++.-..           .|.   ..+..+.+...+|+.+||-.
T Consensus       131 ~~~~al~~y~~aiel----~p~fida~-inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  131 QLQDALALYRAAIEL----KPKFIDAY-INLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             hHHHHHHHHHHHHhc----CchhhHHH-hhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence            999999999999999    77665443 455666665543321           121   12456778888999999988


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375          144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS  223 (444)
Q Consensus       144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~  223 (444)
                      .++.     ++...|...-+|.+||-++..+|+.-.|+..|++|++++|..+++|++||.+|...+.+++|+.+|.+|+ 
T Consensus       206 cYlk-----Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl-  279 (966)
T KOG4626|consen  206 CYLK-----AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL-  279 (966)
T ss_pred             HHHH-----HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH-
Confidence            7643     4566799999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375          224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ  303 (444)
Q Consensus       224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~  303 (444)
                       .+.|++..++-+++.+++. .|..+-||..|+++|+. .|+.    ..|+.++|.++...           |+..||..
T Consensus       280 -~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~-~P~F----~~Ay~NlanALkd~-----------G~V~ea~~  341 (966)
T KOG4626|consen  280 -NLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALEL-QPNF----PDAYNNLANALKDK-----------GSVTEAVD  341 (966)
T ss_pred             -hcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhc-CCCc----hHHHhHHHHHHHhc-----------cchHHHHH
Confidence             9999999999988888765 68999999999999995 4543    57999999998765           56899999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      +|.+++ .+.|+++++.+|||.++.++|.+++|...|+++++..|+. +.++.+||.+|..+|++++|+.+|+.||.+.|
T Consensus       342 cYnkaL-~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  342 CYNKAL-RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             HHHHHH-HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            999999 9999999999999999999999999999999999999999 59999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          384 KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       384 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                        ..+.++.++|..+..+|+.++|+++|.+++.++|--.+
T Consensus       420 --~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae  457 (966)
T KOG4626|consen  420 --TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE  457 (966)
T ss_pred             --hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence              89999999999999999999999999999998886554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-36  Score=301.60  Aligned_cols=417  Identities=42%  Similarity=0.616  Sum_probs=370.7

Q ss_pred             CchhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChH
Q 013375            1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPR   80 (444)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~   80 (444)
                      |+-|..++..++-..+.+.+.+.|++.+|.+.|+.+|++.+.....+.+...+...++++.+.++...++.+|...+..+
T Consensus       165 ~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~  244 (799)
T KOG4162|consen  165 MSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPK  244 (799)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCch
Confidence            56688999999999999999999999999999999999999888777776544456788889999999999999999999


Q ss_pred             HHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCC
Q 013375           81 ETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD  160 (444)
Q Consensus        81 eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~  160 (444)
                      +++..|++++..+|+.+|.....++..++.++..++.+..  ..-......+++.++.++++..++...++.-....-++
T Consensus       245 ~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd  322 (799)
T KOG4162|consen  245 EAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND  322 (799)
T ss_pred             HHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence            9999999999999999998777666666544433332221  00122345788888899998877666555555555689


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC--CCChHHHHHHH
Q 013375          161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKCLPALLIAS  238 (444)
Q Consensus       161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~--P~~~~a~~~~~  238 (444)
                      +.+|.++..++...|+++.+.++||+++...-+..+.|+.++.++...|..-.|+..+++.+  ...  |+++..+++.+
T Consensus       323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~--~~~~~ps~~s~~Lmas  400 (799)
T KOG4162|consen  323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL--KKSEQPSDISVLLMAS  400 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc--ccccCCCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999  677  99999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~  318 (444)
                      .+|+...+..++++.|..+++...........+.++..+|++|..+++.+..++.|...+.++++.+++++ +.+|+||.
T Consensus       401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~~dp~  479 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDPTDPL  479 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCCCCch
Confidence            99999999999999999999996655555677899999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      +.|+++.-|+.+++++.|+++.+++++++|.+...+|+.++.++..++|+.+|+..++.+++..|  +|......+..+.
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIHIE  557 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhhhh
Confidence            99999999999999999999999999997776579999999999999999999999999999999  8999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          399 LVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ...++.++|+..+.+.|.+|.+.+++
T Consensus       558 ~~~~~~e~~l~t~~~~L~~we~~~~~  583 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLALWEAEYGV  583 (799)
T ss_pred             hhcccHHHHHHHHHHHHHHHHhhhhH
Confidence            99999999999999999999966653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.1e-32  Score=291.35  Aligned_cols=259  Identities=14%  Similarity=0.049  Sum_probs=228.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCch
Q 013375          136 NNIEEAILLLMILLRKVALKR---IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL  212 (444)
Q Consensus       136 ~~~~eAi~~l~~~~~~~~l~~---~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~  212 (444)
                      +.+++|+..+     +.++..   .|....+|..+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|+++
T Consensus       308 ~~y~~A~~~~-----~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~  382 (615)
T TIGR00990       308 ESYEEAARAF-----EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD  382 (615)
T ss_pred             hhHHHHHHHH-----HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence            4677887765     333433   47788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchH
Q 013375          213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF  292 (444)
Q Consensus       213 ~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~  292 (444)
                      +|+..|++++  ..+|+++.+++.+|.+++ ..|++++|+.+|++++++.|.+     ..+++.+|.++..+        
T Consensus       383 eA~~~~~~al--~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~-----~~~~~~la~~~~~~--------  446 (615)
T TIGR00990       383 KAEEDFDKAL--KLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDF-----IFSHIQLGVTQYKE--------  446 (615)
T ss_pred             HHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccC-----HHHHHHHHHHHHHC--------
Confidence            9999999999  899999999998888765 5799999999999999965543     46788999998764        


Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH------HHHHHHHH-Hc
Q 013375          293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW------LLMARILS-AQ  365 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~------~~la~~l~-~~  365 (444)
                         |++++|+..|++++ ..+|+++.+++++|.++..+|++++|+..|+++++++|++. ..+      ...+.++. ..
T Consensus       447 ---g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~  521 (615)
T TIGR00990       447 ---GSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWK  521 (615)
T ss_pred             ---CCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHh
Confidence               67999999999999 99999999999999999999999999999999999999853 332      33333443 46


Q ss_pred             cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      |++++|+..+++++.++|  ++..++..+|.++..+|++++|+..|++++++.+...
T Consensus       522 ~~~~eA~~~~~kAl~l~p--~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~  576 (615)
T TIGR00990       522 QDFIEAENLCEKALIIDP--ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG  576 (615)
T ss_pred             hhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence            999999999999999999  8889999999999999999999999999999987533

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=3.3e-31  Score=280.36  Aligned_cols=333  Identities=12%  Similarity=-0.005  Sum_probs=283.4

Q ss_pred             HhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCC
Q 013375           17 AKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNL   96 (444)
Q Consensus        17 g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~   96 (444)
                      .+.+...|++++|...++.++..        .|..           ..++..+|.+....|++++|+..|+++++.    
T Consensus        49 ~~~~~~~g~~~~A~~l~~~~l~~--------~p~~-----------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~----  105 (656)
T PRK15174         49 AIACLRKDETDVGLTLLSDRVLT--------AKNG-----------RDLLRRWVISPLASSQPDAVLQVVNKLLAV----  105 (656)
T ss_pred             HHHHHhcCCcchhHHHhHHHHHh--------CCCc-----------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh----
Confidence            45566778999999999988876        3442           358889999999999999999999999999    


Q ss_pred             ChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 013375           97 DAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD  176 (444)
Q Consensus        97 ~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~  176 (444)
                      +|.+... ...++.                    ++...|++++|+..+     +.++..+|+++.++..+|.++...|+
T Consensus       106 ~P~~~~a-~~~la~--------------------~l~~~g~~~~Ai~~l-----~~Al~l~P~~~~a~~~la~~l~~~g~  159 (656)
T PRK15174        106 NVCQPED-VLLVAS--------------------VLLKSKQYATVADLA-----EQAWLAFSGNSQIFALHLRTLVLMDK  159 (656)
T ss_pred             CCCChHH-HHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            5554332 233343                    334568899999886     55678889999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-hHHHHHHHHHHhcCCCCHHHHHHHH
Q 013375          177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEYPDLAEEGATFA  255 (444)
Q Consensus       177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-~~a~~~~~~~~~~~~~~~~eA~~~~  255 (444)
                      +++|+..|++++...|+++.++..++ .+...|++++|+..+++++  ..+|.. ......++.+ +...|++++|+..+
T Consensus       160 ~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l--~~~~~~~~~~~~~l~~~-l~~~g~~~eA~~~~  235 (656)
T PRK15174        160 ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL--PFFALERQESAGLAVDT-LCAVGKYQEAIQTG  235 (656)
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH--hcCCCcchhHHHHHHHH-HHHCCCHHHHHHHH
Confidence            99999999999999999999998875 4889999999999999999  777643 3333333333 45689999999999


Q ss_pred             HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013375          256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA----KALQALVSAARSTNMRDLSILYRLSLEYAEQR  331 (444)
Q Consensus       256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~----eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g  331 (444)
                      +++++..|.+     ..+++.+|.++...|           +++    +|+..|++++ +++|+++.++.++|.++...|
T Consensus       236 ~~al~~~p~~-----~~~~~~Lg~~l~~~G-----------~~~eA~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g  298 (656)
T PRK15174        236 ESALARGLDG-----AALRRSLGLAYYQSG-----------RSREAKLQAAEHWRHAL-QFNSDNVRIVTLYADALIRTG  298 (656)
T ss_pred             HHHHhcCCCC-----HHHHHHHHHHHHHcC-----------CchhhHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCC
Confidence            9999965433     578889999987764           455    4899999999 999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375          332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      ++++|+..++++++++|+++ .++.++|.++...|++++|+..|++++..+|  ++...+..+|.++...|++++|+..|
T Consensus       299 ~~~eA~~~l~~al~l~P~~~-~a~~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        299 QNEKAIPLLQQSLATHPDLP-YVRAMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999994 9999999999999999999999999999999  78777777899999999999999999


Q ss_pred             HHHHHHHHhhh
Q 013375          412 THLLAALQVQT  422 (444)
Q Consensus       412 ~~al~l~~~~~  422 (444)
                      ++++++.|++.
T Consensus       376 ~~al~~~P~~~  386 (656)
T PRK15174        376 EHYIQARASHL  386 (656)
T ss_pred             HHHHHhChhhc
Confidence            99999988764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=9.9e-30  Score=285.62  Aligned_cols=353  Identities=17%  Similarity=0.088  Sum_probs=258.5

Q ss_pred             HHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCC
Q 013375           15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW   94 (444)
Q Consensus        15 ~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~   94 (444)
                      .+|.++...|++++|+..|+++++.        .|..           ..++..+|.+|.+.|++++|+..|+++++.  
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~-----------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--  332 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKD-----------SEALGALGQAYSQQGDRARAVAQFEKALAL--  332 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            4599999999999999999999987        3432           357888999999999999999999999998  


Q ss_pred             CCChHHH--HHHHHHHH--HHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375           95 NLDAETT--AKLQKEFA--IFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA  170 (444)
Q Consensus        95 ~~~~~~~--~~l~~~~a--~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~  170 (444)
                        +|++.  ..+...+.  .....           ...+..+...|++++|+..+     +.++..+|+++.++..+|.+
T Consensus       333 --~p~~~~~~~~~~ll~~~~~~~~-----------~~~g~~~~~~g~~~eA~~~~-----~~Al~~~P~~~~a~~~Lg~~  394 (1157)
T PRK11447        333 --DPHSSNRDKWESLLKVNRYWLL-----------IQQGDAALKANNLAQAERLY-----QQARQVDNTDSYAVLGLGDV  394 (1157)
T ss_pred             --CCCccchhHHHHHHHhhhHHHH-----------HHHHHHHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence              33221  11100000  00000           00112345678899999876     55677889999999999999


Q ss_pred             HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH------------------------------------------HHHC
Q 013375          171 FSIAGDLSSLATQIEELLPGIINRKERYHILALC------------------------------------------YYGA  208 (444)
Q Consensus       171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------------------------------------l~~~  208 (444)
                      +...|++++|++.|+++++++|++..++..++.+                                          +...
T Consensus       395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~  474 (1157)
T PRK11447        395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ  474 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence            9999999999999999999999998887666554                                          4467


Q ss_pred             CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhh-----
Q 013375          209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA-----  283 (444)
Q Consensus       209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-----  283 (444)
                      |++++|+..|++++  +++|+++.+++.++.++. ..|++++|+..++++++..|.+.+     +++.+|..+..     
T Consensus       475 g~~~eA~~~~~~Al--~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~~-----~~~a~al~l~~~~~~~  546 (1157)
T PRK11447        475 GKWAQAAELQRQRL--ALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDPE-----QVYAYGLYLSGSDRDR  546 (1157)
T ss_pred             CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHhCCCHH
Confidence            99999999999999  899999998888887754 578999999999999986554432     23333322211     


Q ss_pred             ---------------------------------------hhhhhh-------------------chHHHHhhHHHHHHHH
Q 013375          284 ---------------------------------------QSKVAI-------------------TDFDRATRQAKALQAL  305 (444)
Q Consensus       284 ---------------------------------------~~~~~~-------------------~~~~~~~~~~eA~~~~  305 (444)
                                                             .++...                   ....+.|++++|++.|
T Consensus       547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y  626 (1157)
T PRK11447        547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY  626 (1157)
T ss_pred             HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence                                                   111000                   0113457778888888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013375          306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW  385 (444)
Q Consensus       306 ~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~  385 (444)
                      ++++ +++|+++.+++++|.++...|++++|++.|+++++.+|+++ .++..+|.++..+|++++|+..|++++...|+.
T Consensus       627 ~~al-~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~  704 (1157)
T PRK11447        627 QRVL-TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL-NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ  704 (1157)
T ss_pred             HHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence            8888 78888888888888888888888888888888888888774 777778888888888888888888888776521


Q ss_pred             -C---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          386 -E---QGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       386 -~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                       .   +..++..+|.++...|++++|+..|++++.
T Consensus       705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             0   224555667888888888888888888875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.98  E-value=2.2e-29  Score=275.99  Aligned_cols=371  Identities=17%  Similarity=0.121  Sum_probs=258.9

Q ss_pred             HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375           11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL   90 (444)
Q Consensus        11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL   90 (444)
                      ..++..|.++...|++++|++.|.++++..        |..           ..++..++.++...|++++|+..|++++
T Consensus       466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~  526 (899)
T TIGR02917       466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE--------PDF-----------FPAAANLARIDIQEGNPDDAIQRFEKVL  526 (899)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--------CCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            467778888888888888888888887652        221           1355566677777778888888887777


Q ss_pred             CcCCCCChHHHHHHHHHHHHHHhhhcCCC------------CCCccc--cccCccccCCCcHHHHHHHHHHHHHHHHHhh
Q 013375           91 LPCWNLDAETTAKLQKEFAIFLLYCGGET------------CPPNLR--SQMGSSFVPRNNIEEAILLLMILLRKVALKR  156 (444)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~------------~~~~~~--~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~  156 (444)
                      +.    .|.+... ...++.++...+...            .|....  ..++..+...|++++|+..+     +.++..
T Consensus       527 ~~----~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-----~~~~~~  596 (899)
T TIGR02917       527 TI----DPKNLRA-ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL-----NEAADA  596 (899)
T ss_pred             Hh----CcCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH-----HHHHHc
Confidence            76    3332211 122232222211110            111111  22344556677777777764     334556


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375          157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI  236 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~  236 (444)
                      .|.++.+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++  ..+|++..++..
T Consensus       597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~  674 (899)
T TIGR02917       597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL--ELKPDNTEAQIG  674 (899)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHH
Confidence            677777777788888778888888888888877777777777778888877888888888888877  677777776666


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc----------------------hHHH
Q 013375          237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT----------------------DFDR  294 (444)
Q Consensus       237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~----------------------~~~~  294 (444)
                      ++.++ ...|++++|+..++++.+..|++     ...+..+|.++...++...+                      ...+
T Consensus       675 l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  748 (899)
T TIGR02917       675 LAQLL-LAAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA  748 (899)
T ss_pred             HHHHH-HHcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence            55554 33566666666666666643332     23445555555444332211                      0123


Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|++++|++.+++++ ..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|+ .+|+.+
T Consensus       749 ~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~-~~A~~~  825 (899)
T TIGR02917       749 SGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD-PRALEY  825 (899)
T ss_pred             CCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc-HHHHHH
Confidence            567888888888888 8888888888888888888888888888888888888888 4888888888888888 788888


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ++++++..|  +++..+..+|.++...|++++|+..|++++++.|.+..
T Consensus       826 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  872 (899)
T TIGR02917       826 AEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA  872 (899)
T ss_pred             HHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence            888888888  78888888888888888888888888888888776433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=6.8e-29  Score=278.88  Aligned_cols=326  Identities=15%  Similarity=0.025  Sum_probs=242.8

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHH----HHHHHHHHHHHHhCChHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLN----RAVELLPELWKLADAPRETIMS   85 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~a~~~l~~~~~~~g~~~eA~~~   85 (444)
                      .++++.+|.++.+.|++++|+..|+++++..        |...... +....+.    ......|.++...|++++|+..
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--------p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~  373 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALD--------PHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERL  373 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5788999999999999999999999999863        2211000 0000111    1223457788899999999999


Q ss_pred             HHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHH--
Q 013375           86 YRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI--  163 (444)
Q Consensus        86 y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~--  163 (444)
                      |+++++.    +|.+... ...++.++.                    .+|++++|+..+     +.++..+|++..+  
T Consensus       374 ~~~Al~~----~P~~~~a-~~~Lg~~~~--------------------~~g~~~eA~~~y-----~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        374 YQQARQV----DNTDSYA-VLGLGDVAM--------------------ARKDYAAAERYY-----QQALRMDPGNTNAVR  423 (1157)
T ss_pred             HHHHHHh----CCCCHHH-HHHHHHHHH--------------------HCCCHHHHHHHH-----HHHHHhCCCCHHHHH
Confidence            9999998    4443321 233444333                    234444554443     2233334444333  


Q ss_pred             ----------------------------------------HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 013375          164 ----------------------------------------LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL  203 (444)
Q Consensus       164 ----------------------------------------~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  203 (444)
                                                              +..+|.++...|++++|++.|+++++++|+++.+++.+|.
T Consensus       424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~  503 (1157)
T PRK11447        424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ  503 (1157)
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                                    4455666778899999999999999999999999999999


Q ss_pred             HHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----------------------
Q 013375          204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE-----------------------  260 (444)
Q Consensus       204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~-----------------------  260 (444)
                      +|...|++++|+..|++++  ..+|+++.+++..+. ++...++.++|+..++++..                       
T Consensus       504 ~~~~~G~~~~A~~~l~~al--~~~P~~~~~~~a~al-~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a  580 (1157)
T PRK11447        504 DLRQAGQRSQADALMRRLA--QQKPNDPEQVYAYGL-YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA  580 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHH--HcCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999  899999998876653 45567788888777665321                       


Q ss_pred             -----------------HcCCCcchhhhHHHHHhhhhhhhhhhhhhch-----------------------HHHHhhHHH
Q 013375          261 -----------------CLGDGCDQMESTANCLLGISLSAQSKVAITD-----------------------FDRATRQAK  300 (444)
Q Consensus       261 -----------------~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~-----------------------~~~~~~~~e  300 (444)
                                       ..|++     ...++.+|.++...++...+.                       ....|++++
T Consensus       581 ~~l~~~G~~~eA~~~l~~~p~~-----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        581 NRLRDSGKEAEAEALLRQQPPS-----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHhCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence                             11221     345677888877766543210                       135689999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHccCHHHHHHHH
Q 013375          301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-----KGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-----~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      |++.|++++ +.+|+++.++..+|.++...|++++|++.|++++...|+++.     ..+..+|.++..+|++++|+..|
T Consensus       656 A~~~l~~ll-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y  734 (1157)
T PRK11447        656 ARAQLAKLP-ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY  734 (1157)
T ss_pred             HHHHHHHHh-ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999 999999999999999999999999999999999999877531     35667799999999999999999


Q ss_pred             HHHHhhcC
Q 013375          376 NAALDQTG  383 (444)
Q Consensus       376 ~~al~~~P  383 (444)
                      ++|+....
T Consensus       735 ~~Al~~~~  742 (1157)
T PRK11447        735 KDAMVASG  742 (1157)
T ss_pred             HHHHhhcC
Confidence            99987654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=5.4e-29  Score=263.47  Aligned_cols=300  Identities=14%  Similarity=0.084  Sum_probs=260.5

Q ss_pred             HHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013375           70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL  149 (444)
Q Consensus        70 ~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~  149 (444)
                      ...+++.|++++|+..++.++..    .|.+...+ ..++..                    ....|++++|+..+    
T Consensus        49 ~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l-~~l~~~--------------------~l~~g~~~~A~~~l----   99 (656)
T PRK15174         49 AIACLRKDETDVGLTLLSDRVLT----AKNGRDLL-RRWVIS--------------------PLASSQPDAVLQVV----   99 (656)
T ss_pred             HHHHHhcCCcchhHHHhHHHHHh----CCCchhHH-HHHhhh--------------------HhhcCCHHHHHHHH----
Confidence            34567999999999999999998    44443322 223221                    22378899999876    


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK  229 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~  229 (444)
                       +.++..+|+++.++..+|.++...|++++|++.|+++++++|+++.+|..+|.++...|++++|+..+++++  ..+|+
T Consensus       100 -~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~--~~~P~  176 (656)
T PRK15174        100 -NKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA--QEVPP  176 (656)
T ss_pred             -HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH--HhCCC
Confidence             567788999999999999999999999999999999999999999999999999999999999999999999  89999


Q ss_pred             ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013375          230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA  309 (444)
Q Consensus       230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al  309 (444)
                      ++.++...+ . +...|++++|+..++++++..+...    ......+|.++..           .|++++|+..|++++
T Consensus       177 ~~~a~~~~~-~-l~~~g~~~eA~~~~~~~l~~~~~~~----~~~~~~l~~~l~~-----------~g~~~eA~~~~~~al  239 (656)
T PRK15174        177 RGDMIATCL-S-FLNKSRLPEDHDLARALLPFFALER----QESAGLAVDTLCA-----------VGKYQEAIQTGESAL  239 (656)
T ss_pred             CHHHHHHHH-H-HHHcCCHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHHHH-----------CCCHHHHHHHHHHHH
Confidence            998876543 3 4557999999999999998654332    1233445666644           367999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013375          310 RSTNMRDLSILYRLSLEYAEQRKLNA----AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW  385 (444)
Q Consensus       310 ~~~~P~~~~a~~~lg~~~~~~g~~~~----A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~  385 (444)
                       +++|+++.+++++|.++...|++++    |+..|+++++++|++ ..++..+|.++..+|++++|+..+++++.++|  
T Consensus       240 -~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--  315 (656)
T PRK15174        240 -ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-VRIVTLYADALIRTGQNEKAIPLLQQSLATHP--  315 (656)
T ss_pred             -hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence             9999999999999999999999996    899999999999999 59999999999999999999999999999999  


Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ++..++.++|.++...|++++|+..|+++++..|++.
T Consensus       316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            8999999999999999999999999999999888653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=7.5e-29  Score=262.24  Aligned_cols=306  Identities=11%  Similarity=-0.022  Sum_probs=254.8

Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375           62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA  141 (444)
Q Consensus        62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA  141 (444)
                      ....+...|..+++.|++++|+..|+++|+.    .|+..  ...+++.                    .|...|++++|
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----~p~~~--~~~n~a~--------------------~~~~l~~~~~A  179 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----KPDPV--YYSNRAA--------------------CHNALGDWEKV  179 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchH--HHHHHHH--------------------HHHHhCCHHHH
Confidence            3456778899999999999999999999999    33311  2233343                    34557889999


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC------------------------------
Q 013375          142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI------------------------------  191 (444)
Q Consensus       142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~------------------------------  191 (444)
                      +..+     ..++..+|++..+|+.+|.++...|++++|+..|..++..+                              
T Consensus       180 i~~~-----~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~  254 (615)
T TIGR00990       180 VEDT-----TAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK  254 (615)
T ss_pred             HHHH-----HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9875     55778899999999999999999999999998776554333                              


Q ss_pred             CCCHHHHHH---------------------------------HHHHHH---HCCCchHHHHHHHHhhcCCC---CCCChH
Q 013375          192 INRKERYHI---------------------------------LALCYY---GAGEDLVALNLLRTLLSGSE---DPKCLP  232 (444)
Q Consensus       192 p~~~~~~~~---------------------------------la~~l~---~~g~~~~A~~~~~~al~~~~---~P~~~~  232 (444)
                      |.+...+..                                 +|....   ..+++++|+..|++++  ..   .|+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al--~~~~~~~~~a~  332 (615)
T TIGR00990       255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL--DLGKLGEKEAI  332 (615)
T ss_pred             CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH--hcCCCChhhHH
Confidence            222222222                                 222211   2368999999999999  55   477777


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST  312 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~  312 (444)
                      ++..+|.++ ...|++++|+..++++++..|..     ..+|+.+|.++...           |++++|+..|++++ ++
T Consensus       333 a~~~lg~~~-~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~-----------g~~~eA~~~~~~al-~~  394 (615)
T TIGR00990       333 ALNLRGTFK-CLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLEL-----------GDPDKAEEDFDKAL-KL  394 (615)
T ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-Hh
Confidence            888776664 45799999999999999964432     56888999988654           67999999999999 99


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                      +|+++.+++++|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..|++++..+|  +++.+++
T Consensus       395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~  471 (615)
T TIGR00990       395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-IFSHIQLGVTQYKEGSIASSMATFRRCKKNFP--EAPDVYN  471 (615)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHH
Confidence            99999999999999999999999999999999999999 59999999999999999999999999999999  8999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          393 TKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      .+|.++..+|++++|+..|++++++.|+.
T Consensus       472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       472 YYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999998864

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=2.2e-28  Score=268.07  Aligned_cols=370  Identities=16%  Similarity=0.042  Sum_probs=261.2

Q ss_pred             HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375           11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL   90 (444)
Q Consensus        11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL   90 (444)
                      ..++..|..+...|++++|+..++++++.        .|..           ..++..+|.++...|++++|+..|++++
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~   83 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPND-----------AEARFLLGKIYLALGDYAAAEKELRKAL   83 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45888999999999999999999999986        3442           3578889999999999999999999999


Q ss_pred             CcCCCCChHHHHHHHHHHHHHHhhhcCCC------------CCCccc---cccCccccCCCcHHHHHHHHHHHHHHHHHh
Q 013375           91 LPCWNLDAETTAKLQKEFAIFLLYCGGET------------CPPNLR---SQMGSSFVPRNNIEEAILLLMILLRKVALK  155 (444)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~------------~~~~~~---~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~  155 (444)
                      +.    .|.+.. ....++..+...+...            .++...   ...+..+...|++++|+..+     +.++.
T Consensus        84 ~~----~~~~~~-~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-----~~a~~  153 (899)
T TIGR02917        84 SL----GYPKNQ-VLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY-----EQALA  153 (899)
T ss_pred             Hc----CCChhh-hHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHH-----HHHHh
Confidence            98    332211 1223333333322111            011100   23455667788888888875     44567


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      .+|+++.++..++.++...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|++++  ..+|+++.++.
T Consensus       154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~  231 (899)
T TIGR02917       154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI--ALRPNNPAVLL  231 (899)
T ss_pred             cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhCCCCHHHHH
Confidence            7788888888888888888888888888888888888888888888888888888888888888888  78888888877


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc-----------------------hH
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT-----------------------DF  292 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~-----------------------~~  292 (444)
                      ..+.++. ..|++++|...++++++..|.+     ..+++..|.++...++....                       ..
T Consensus       232 ~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~  305 (899)
T TIGR02917       232 ALATILI-EAGEFEEAEKHADALLKKAPNS-----PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE  305 (899)
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            7766654 4678888888888888865543     23455555555443321100                       01


Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013375          293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~  372 (444)
                      ...|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++..+|.+ ...+..+|.++...|++++|+
T Consensus       306 ~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~  383 (899)
T TIGR02917       306 YQLGNLEQAYQYLNQIL-KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD-PAALSLLGEAYLALGDFEKAA  383 (899)
T ss_pred             HHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence            23456666666666666 6666666666666666666677777777777776666666 366667777777777777777


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      .+++++++..|  ++..++..+|.++...|++++|+..+++++++.|+.
T Consensus       384 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  430 (899)
T TIGR02917       384 EYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL  430 (899)
T ss_pred             HHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc
Confidence            77777777777  666667777777777777777777777776665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=4.1e-25  Score=238.42  Aligned_cols=349  Identities=13%  Similarity=-0.010  Sum_probs=238.3

Q ss_pred             HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375           11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL   90 (444)
Q Consensus        11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL   90 (444)
                      .++...|.++...|++++|++.|+++|+.        .|.+           ..+...++.++...|++++|+..+++++
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l  110 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLV  110 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44666677777777777777777777665        2332           1244455666667777777777777777


Q ss_pred             CcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375           91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA  170 (444)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~  170 (444)
                      +.    +|++..  ...++.                    ++...|++++|+..+     +.++...|+++.++..++.+
T Consensus       111 ~~----~P~~~~--~~~la~--------------------~l~~~g~~~~Al~~l-----~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049        111 SG----APDKAN--LLALAY--------------------VYKRAGRHWDELRAM-----TQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             Hh----CCCCHH--HHHHHH--------------------HHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence            76    444332  122232                    233456677777664     44566677777777777777


Q ss_pred             HHhcCCHHHHH----------------------------------------------HHHHhhcCCCCCCHHH-------
Q 013375          171 FSIAGDLSSLA----------------------------------------------TQIEELLPGIINRKER-------  197 (444)
Q Consensus       171 l~~~g~~~~A~----------------------------------------------~~~~~al~~~p~~~~~-------  197 (444)
                      +...|+.++|+                                              +.|+++++..|.+++.       
T Consensus       160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a  239 (765)
T PRK10049        160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA  239 (765)
T ss_pred             HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence            76655555444                                              3333444322222211       


Q ss_pred             HHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013375          198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL  276 (444)
Q Consensus       198 ~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~  276 (444)
                      ++.....++..|++++|+..|++++  +..|+.|. +...++.++ ...|++++|+..|+++++. ++.........+..
T Consensus       240 ~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~~~~P~~a~~~la~~y-l~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~~~  315 (765)
T PRK10049        240 RIDRLGALLARDRYKDVISEYQRLK--AEGQIIPPWAQRWVASAY-LKLHQPEKAQSILTELFYH-PETIADLSDEELAD  315 (765)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHH-HhcCCcHHHHHHHHHHhhc-CCCCCCCChHHHHH
Confidence            1121223456677888888888877  55432221 222234443 3467788888888887763 32210000123333


Q ss_pred             hhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-------------C--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 013375          277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-------------D--LSILYRLSLEYAEQRKLNAAHYYAK  341 (444)
Q Consensus       277 lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-------------~--~~a~~~lg~~~~~~g~~~~A~~~~~  341 (444)
                      ++.++.           ..+++++|+..++++. ..+|.             +  ..++..+|.++...|++++|++.++
T Consensus       316 L~~a~~-----------~~g~~~eA~~~l~~~~-~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~  383 (765)
T PRK10049        316 LFYSLL-----------ESENYPGALTVTAHTI-NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR  383 (765)
T ss_pred             HHHHHH-----------hcccHHHHHHHHHHHh-hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            444443           3478999999999999 88873             2  4578899999999999999999999


Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          342 MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       342 ~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      +++...|++ ..++..+|.++...|++++|+..+++++.++|  ++..+++.+|.+...+|++++|+..++++++..|+.
T Consensus       384 ~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        384 ELAYNAPGN-QGLRIDYASVLQARGWPRAAENELKKAEVLEP--RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            999999999 59999999999999999999999999999999  999999999999999999999999999999999988


Q ss_pred             hhhccCc
Q 013375          422 TKTFSSD  428 (444)
Q Consensus       422 ~~~~~~~  428 (444)
                      ..+...+
T Consensus       461 ~~~~~~~  467 (765)
T PRK10049        461 PGVQRLA  467 (765)
T ss_pred             HHHHHHH
Confidence            7765443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=5e-25  Score=239.01  Aligned_cols=329  Identities=12%  Similarity=-0.010  Sum_probs=220.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCc-c-----ccCCC
Q 013375           63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGS-S-----FVPRN  136 (444)
Q Consensus        63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~-~-----~~~~~  136 (444)
                      ..++..++-...+.|+.++|...|+.++..+.  +..-+..+...++.++........+... ..++. +     -.-.|
T Consensus       376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~  452 (987)
T PRK09782        376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKV-AILSKPLPLAEQRQWQS  452 (987)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHH-HHhccccccchhHHHHh
Confidence            35777777788999999999999999998621  1111122444555554443321111100 00000 0     00012


Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHH
Q 013375          137 NIEEAILLLMILLRKVALKRIEW--DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVA  214 (444)
Q Consensus       137 ~~~eAi~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A  214 (444)
                      ++.++.....  ....++...|.  ++.+|+++|.++.. |++++|+.+|.+++...|++. .+..+|.++...|++++|
T Consensus       453 ~~~~~~~~~~--~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeA  528 (987)
T PRK09782        453 QLPGIADNCP--AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATA  528 (987)
T ss_pred             hhhhhhhhHH--HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHH
Confidence            2222111110  01234455566  78888888888876 788888888888888888654 355567777788888888


Q ss_pred             HHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHH
Q 013375          215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR  294 (444)
Q Consensus       215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~  294 (444)
                      +..|++++  ...|.+ ..++.++.++. ..|++++|+.+++++++..|+.     ...+..++....           +
T Consensus       529 i~~~rka~--~~~p~~-~a~~~la~all-~~Gd~~eA~~~l~qAL~l~P~~-----~~l~~~La~~l~-----------~  588 (987)
T PRK09782        529 LAAWQKIS--LHDMSN-EDLLAAANTAQ-AAGNGAARDRWLQQAEQRGLGD-----NALYWWLHAQRY-----------I  588 (987)
T ss_pred             HHHHHHHh--ccCCCc-HHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHH-----------h
Confidence            88888877  555554 34555555543 4678888888888888754332     122222322221           2


Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|++++|+..|++++ +++|+ +.+++++|.++.+.|++++|+..|+++++++|++ ..++.++|.++...|++++|+..
T Consensus       589 ~Gr~~eAl~~~~~AL-~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        589 PGQPELALNDLTRSL-NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-SNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             CCCHHHHHHHHHHHH-HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            367888888888888 88885 8888888888888888888888888888888888 48888888888888888888888


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      |+++++.+|  +++.+++++|.++..+|++++|+..|++++++.|+...
T Consensus       666 l~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        666 LERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence            888888888  78888888888888888888888888888888775543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=6e-25  Score=219.89  Aligned_cols=299  Identities=18%  Similarity=0.120  Sum_probs=226.9

Q ss_pred             HHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013375           70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL  149 (444)
Q Consensus        70 ~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~  149 (444)
                      |..+...|++++|+..|+++++.    +|.+.. ....++.                    ++...|++++|+..+    
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~----~p~~~~-~~~~la~--------------------~~~~~g~~~~A~~~~----   92 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKV----DPETVE-LHLALGN--------------------LFRRRGEVDRAIRIH----   92 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhc----CcccHH-HHHHHHH--------------------HHHHcCcHHHHHHHH----
Confidence            44555666666666666666666    443321 1122222                    223345666666553    


Q ss_pred             HHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC
Q 013375          150 RKVALKRIEWD----PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS  225 (444)
Q Consensus       150 ~~~~l~~~p~~----~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~  225 (444)
                       +.++...+..    ..++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++  .
T Consensus        93 -~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~  169 (389)
T PRK11788         93 -QNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE--K  169 (389)
T ss_pred             -HHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH--H
Confidence             2222321111    24678899999999999999999999999999999999999999999999999999999999  7


Q ss_pred             CCCCChH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHH
Q 013375          226 EDPKCLP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK  300 (444)
Q Consensus       226 ~~P~~~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~e  300 (444)
                      .+|++..     .+..++.++ ...|++++|+.+++++++..|..     ..+++.+|.++...           |++++
T Consensus       170 ~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~-----------g~~~~  232 (389)
T PRK11788        170 LGGDSLRVEIAHFYCELAQQA-LARGDLDAARALLKKALAADPQC-----VRASILLGDLALAQ-----------GDYAA  232 (389)
T ss_pred             hcCCcchHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhHCcCC-----HHHHHHHHHHHHHC-----------CCHHH
Confidence            7777543     233444443 45789999999999999965432     46788899888664           67899


Q ss_pred             HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          301 ALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       301 A~~~~~~al~~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      |++.|++++ ..+|++ ..++..++.++...|++++|+..++++++.+|+.  ..+..++.++..+|++++|+..+++++
T Consensus       233 A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~~~l~~~l  309 (389)
T PRK11788        233 AIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQALLREQL  309 (389)
T ss_pred             HHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999 999987 4678899999999999999999999999999986  445889999999999999999999999


Q ss_pred             hhcCCCCcHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH--HHHhhh
Q 013375          380 DQTGKWEQGELLRTKAKVQLV--QGQLKGAVETYTHLLA--ALQVQT  422 (444)
Q Consensus       380 ~~~P~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~--l~~~~~  422 (444)
                      +..|  ++..+...++.....  .|+.++++..+++.++  +.++..
T Consensus       310 ~~~P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        310 RRHP--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HhCc--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            9999  776655444433322  5689999999999986  444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=7.6e-25  Score=236.33  Aligned_cols=333  Identities=12%  Similarity=-0.014  Sum_probs=256.7

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCCh
Q 013375           19 CLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDA   98 (444)
Q Consensus        19 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~   98 (444)
                      ...-.|++++|++.|.+++..        .|..           ..++..++.++...|++++|+..|+++++.    +|
T Consensus        24 ia~~~g~~~~A~~~~~~~~~~--------~~~~-----------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P   80 (765)
T PRK10049         24 IALWAGQDAEVITVYNRYRVH--------MQLP-----------ARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EP   80 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHhh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC
Confidence            445679999999999887753        1221           246888899999999999999999999999    55


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH
Q 013375           99 ETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLS  178 (444)
Q Consensus        99 ~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~  178 (444)
                      .+... ...++..                    +...|++++|+..+     +.++...|+++. +..+|.++...|+++
T Consensus        81 ~~~~a-~~~la~~--------------------l~~~g~~~eA~~~l-----~~~l~~~P~~~~-~~~la~~l~~~g~~~  133 (765)
T PRK10049         81 QNDDY-QRGLILT--------------------LADAGQYDEALVKA-----KQLVSGAPDKAN-LLALAYVYKRAGRHW  133 (765)
T ss_pred             CCHHH-HHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHH-HHHHHHHHHHCCCHH
Confidence            54332 2334433                    33467899999876     556788999999 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC----------------------------
Q 013375          179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC----------------------------  230 (444)
Q Consensus       179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~----------------------------  230 (444)
                      +|+..|+++++.+|+++++++.+|.++...|+.++|+..++++.  . +|+.                            
T Consensus       134 ~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~--~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~  210 (765)
T PRK10049        134 DELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN--L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYA  210 (765)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC--C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence            99999999999999999999999999998888887776666555  3 3332                            


Q ss_pred             -------------------hHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          231 -------------------LPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       231 -------------------~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                                         +..       .+...+.++ ..|++++|+..|+++++..++.+    ..+...+|.+|.. 
T Consensus       211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P----~~a~~~la~~yl~-  284 (765)
T PRK10049        211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIP----PWAQRWVASAYLK-  284 (765)
T ss_pred             HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHh-
Confidence                               111       000011122 23555666666666555321111    1122223444433 


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----------
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS----------  350 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----------  350 (444)
                                .+++++|+..|++++ +.+|.+    ......++.++.++|++++|+..++++...+|..          
T Consensus       285 ----------~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~  353 (765)
T PRK10049        285 ----------LHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI  353 (765)
T ss_pred             ----------cCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence                      478999999999999 999887    4567888889999999999999999999998731          


Q ss_pred             ---C-hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          351 ---N-LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       351 ---~-~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                         . ..++..+|.++...|++++|+..+++++...|  ++..+++.+|.++...|++++|++.+++++++.|++..
T Consensus       354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~  428 (765)
T PRK10049        354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN  428 (765)
T ss_pred             CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence               1 24678899999999999999999999999999  89999999999999999999999999999999998744

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=8.6e-25  Score=237.16  Aligned_cols=256  Identities=9%  Similarity=-0.059  Sum_probs=223.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHH
Q 013375          136 NNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL  215 (444)
Q Consensus       136 ~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~  215 (444)
                      +++++|+..+     ..++...|++. ....+|.++...|++++|+..|++++...|. ...++.+|.++...|++++|+
T Consensus       490 ~~~~eAi~a~-----~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~  562 (987)
T PRK09782        490 TLPGVALYAW-----LQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARD  562 (987)
T ss_pred             CCcHHHHHHH-----HHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHH
Confidence            5788898865     33446668654 3445566777999999999999999887555 466899999999999999999


Q ss_pred             HHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHH
Q 013375          216 NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA  295 (444)
Q Consensus       216 ~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~  295 (444)
                      ..|++++  ..+|++......++.. ....|++++|+..|+++++..| +     ..+++.+|.++.+.           
T Consensus       563 ~~l~qAL--~l~P~~~~l~~~La~~-l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~l~~l-----------  622 (987)
T PRK09782        563 RWLQQAE--QRGLGDNALYWWLHAQ-RYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATIYRQR-----------  622 (987)
T ss_pred             HHHHHHH--hcCCccHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHC-----------
Confidence            9999999  8999987766544332 2346999999999999999654 3     35789999988764           


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      |++++|+..|++++ .++|+++.+++++|.++...|++++|+..|+++++++|+++ .++.++|.++..+|++++|+.++
T Consensus       623 G~~deA~~~l~~AL-~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-~a~~nLA~al~~lGd~~eA~~~l  700 (987)
T PRK09782        623 HNVPAAVSDLRAAL-ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-ALIRQLAYVNQRLDDMAATQHYA  700 (987)
T ss_pred             CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Confidence            67999999999999 99999999999999999999999999999999999999995 99999999999999999999999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ++++++.|  ++..+.+..|.+.....+++.|.+.|+++..+.++-.
T Consensus       701 ~~Al~l~P--~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        701 RLVIDDID--NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHhcCC--CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            99999999  8999999999999999999999999999999888655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.9e-26  Score=227.48  Aligned_cols=248  Identities=14%  Similarity=0.055  Sum_probs=227.5

Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------------------------------cCCCCCCHHHH
Q 013375          153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEEL----------------------------------LPGIINRKERY  198 (444)
Q Consensus       153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~a----------------------------------l~~~p~~~~~~  198 (444)
                      .-...++-.++..++|.+|+++++|++|..+|+.+                                  +..+|+.|+.|
T Consensus       345 lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesW  424 (638)
T KOG1126|consen  345 LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESW  424 (638)
T ss_pred             hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHH
Confidence            33455677789999999999999999999999988                                  34488999999


Q ss_pred             HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013375          199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG  278 (444)
Q Consensus       199 ~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg  278 (444)
                      ..+|.+|--+++++.|+++|++|+  ++||++..+|.++|--. .....+|.|..+|+++|...|.+     ..||+-+|
T Consensus       425 ca~GNcfSLQkdh~~Aik~f~RAi--Qldp~faYayTLlGhE~-~~~ee~d~a~~~fr~Al~~~~rh-----YnAwYGlG  496 (638)
T KOG1126|consen  425 CALGNCFSLQKDHDTAIKCFKRAI--QLDPRFAYAYTLLGHES-IATEEFDKAMKSFRKALGVDPRH-----YNAWYGLG  496 (638)
T ss_pred             HHhcchhhhhhHHHHHHHHHHHhh--ccCCccchhhhhcCChh-hhhHHHHhHHHHHHhhhcCCchh-----hHHHHhhh
Confidence            999999999999999999999999  99999999988766543 34678999999999999965543     68999999


Q ss_pred             hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      ++|.++           ++++.|.-.|++|+ .++|.|......+|.++.+.|+.++|+..|++|+.++|.++ -+.+..
T Consensus       497 ~vy~Kq-----------ek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-l~~~~~  563 (638)
T KOG1126|consen  497 TVYLKQ-----------EKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-LCKYHR  563 (638)
T ss_pred             hheecc-----------chhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-hhHHHH
Confidence            999876           57899999999999 99999999999999999999999999999999999999996 999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      |.+++..++|++|+..+++.-++.|  +...+++.+|.++.++|+.+-|+..|.-|.++.|+..+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            9999999999999999999999999  89999999999999999999999999999999997665

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.8e-24  Score=221.74  Aligned_cols=382  Identities=16%  Similarity=0.119  Sum_probs=289.6

Q ss_pred             HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 013375            8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYR   87 (444)
Q Consensus         8 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~   87 (444)
                      +.++.+|+.|.+|..+|+|++|-..|..+++..        ++++          .-++..+|..|+..|.+++|+..|+
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--------~d~~----------~l~~~GlgQm~i~~~dle~s~~~fE  366 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--------NDNF----------VLPLVGLGQMYIKRGDLEESKFCFE  366 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--------CCCc----------cccccchhHHHHHhchHHHHHHHHH
Confidence            668999999999999999999999999998762        3322          1245667889999999999999999


Q ss_pred             HHhCcCCCCChHHHHHHHHHHH----------------HHHhhhcCCCCCCccc--cccCccccCCCcHHHHHHHHHHHH
Q 013375           88 RALLPCWNLDAETTAKLQKEFA----------------IFLLYCGGETCPPNLR--SQMGSSFVPRNNIEEAILLLMILL  149 (444)
Q Consensus        88 ~aL~~~~~~~~~~~~~l~~~~a----------------~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~eAi~~l~~~~  149 (444)
                      ++++.    .|.+... ..-++                ..++....+..|.+..  ..++.++.. ++...++..+..+.
T Consensus       367 kv~k~----~p~~~et-m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~  440 (1018)
T KOG2002|consen  367 KVLKQ----LPNNYET-MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNAL  440 (1018)
T ss_pred             HHHHh----CcchHHH-HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence            99998    3333221 11222                2222222222222211  112223332 23323344433221


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----CCCC-----HHHHHHHHHHHHHCCCchHHHHHHH
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-----IINR-----KERYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      .-..-...+--+++.+++|..++..|++++|...|.+|+..     +++.     ...-||+|.++..+++++.|...|+
T Consensus       441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk  520 (1018)
T KOG2002|consen  441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK  520 (1018)
T ss_pred             HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            11111222346889999999999999999999999999877     2222     2358999999999999999999999


Q ss_pred             HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh----------
Q 013375          220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI----------  289 (444)
Q Consensus       220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~----------  289 (444)
                      ..+  +..|+++.+++.+|.+. +..+...+|..+++.++.....+     ..++.++|..+........          
T Consensus       521 ~Il--kehp~YId~ylRl~~ma-~~k~~~~ea~~~lk~~l~~d~~n-----p~arsl~G~~~l~k~~~~~a~k~f~~i~~  592 (1018)
T KOG2002|consen  521 SIL--KEHPGYIDAYLRLGCMA-RDKNNLYEASLLLKDALNIDSSN-----PNARSLLGNLHLKKSEWKPAKKKFETILK  592 (1018)
T ss_pred             HHH--HHCchhHHHHHHhhHHH-HhccCcHHHHHHHHHHHhcccCC-----cHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence            999  89999999999887554 45678889999999999965554     3567777765554321110          


Q ss_pred             -------ch--------------------HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013375          290 -------TD--------------------FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKM  342 (444)
Q Consensus       290 -------~~--------------------~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~  342 (444)
                             ++                    -...+.+++|++.|.+++ +.+|.|.-+-+.+|.+++..|++.+|+..|.+
T Consensus       593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq  671 (1018)
T KOG2002|consen  593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ  671 (1018)
T ss_pred             hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence                   00                    013567899999999999 99999999999999999999999999999999


Q ss_pred             HHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          343 LLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       343 al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      +.+--.++. .+|.++|.|+..+|+|-.|+..|+.+++.+-..++.+++..+|.++.+.|++.+|.++...++.+.|+++
T Consensus       672 VrEa~~~~~-dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~  750 (1018)
T KOG2002|consen  672 VREATSDFE-DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT  750 (1018)
T ss_pred             HHHHHhhCC-ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence            988777775 9999999999999999999999999997653336899999999999999999999999999999988776


Q ss_pred             h
Q 013375          423 K  423 (444)
Q Consensus       423 ~  423 (444)
                      .
T Consensus       751 ~  751 (1018)
T KOG2002|consen  751 S  751 (1018)
T ss_pred             h
Confidence            5

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=2.7e-24  Score=215.21  Aligned_cols=269  Identities=17%  Similarity=-0.001  Sum_probs=231.1

Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHH
Q 013375          132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR----KERYHILALCYYG  207 (444)
Q Consensus       132 ~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~  207 (444)
                      +...|++++|+..+     +.++..+|+++.++..+|.++...|++++|+..+++++...+..    ..+++.+|.+|..
T Consensus        45 ~~~~~~~~~A~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         45 FLLNEQPDKAIDLF-----IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHhcCChHHHHHHH-----HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            44567899999886     45667889999999999999999999999999999999864332    3678999999999


Q ss_pred             CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013375          208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV  287 (444)
Q Consensus       208 ~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~  287 (444)
                      .|++++|+..|++++  ..+|.+..++..++.++. ..|++++|+..++++++..+.+........+..+|.++...   
T Consensus       120 ~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---  193 (389)
T PRK11788        120 AGLLDRAEELFLQLV--DEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR---  193 (389)
T ss_pred             CCCHHHHHHHHHHHH--cCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC---
Confidence            999999999999999  889999988888887764 47899999999999998654332212233455677766543   


Q ss_pred             hhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375          288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR  367 (444)
Q Consensus       288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~  367 (444)
                              +++++|+..|++++ +.+|++..+++.+|.++...|++++|++.+++++..+|++...++..++.++...|+
T Consensus       194 --------~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        194 --------GDLDAARALLKKAL-AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             --------CCHHHHHHHHHHHH-hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence                    67999999999999 999999999999999999999999999999999999998633678899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       368 ~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +++|+..++++++..|  +... +..++.++...|++++|+..++++++..|+...
T Consensus       265 ~~~A~~~l~~~~~~~p--~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~  317 (389)
T PRK11788        265 EAEGLEFLRRALEEYP--GADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRG  317 (389)
T ss_pred             HHHHHHHHHHHHHhCC--CchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence            9999999999999999  6644 488999999999999999999999999887653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.4e-23  Score=196.60  Aligned_cols=240  Identities=13%  Similarity=0.080  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      ..++.+.|..+.-.|++-.|.+.|+.+|.++|.+...|..+|.+|....+.++-...|.+|.  ++||+++.+|+..|.+
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~--~ldp~n~dvYyHRgQm  403 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE--DLDPENPDVYYHRGQM  403 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH--hcCCCCCchhHhHHHH
Confidence            45677788888899999999999999999999999999999999999999999999999999  9999999999999888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                      .+- ++++++|+.-|++++++.|.+     ..++..++.+..++           ++++++...|+.+. +.-|+.++++
T Consensus       404 ~fl-L~q~e~A~aDF~Kai~L~pe~-----~~~~iQl~~a~Yr~-----------~k~~~~m~~Fee~k-kkFP~~~Evy  465 (606)
T KOG0547|consen  404 RFL-LQQYEEAIADFQKAISLDPEN-----AYAYIQLCCALYRQ-----------HKIAESMKTFEEAK-KKFPNCPEVY  465 (606)
T ss_pred             HHH-HHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH-HhCCCCchHH
Confidence            654 689999999999999965543     56788888877665           56899999999999 9999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCC------CChHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG------SNLKGWLLMARILSA-QKRYEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~~la~~l~~-~g~~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      ...|.++..++++++|++.|.+|++|.|.      ++ ..+.+.|.+... .+++..|+..+++|++++|  .-..++..
T Consensus       466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~-~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp--kce~A~~t  542 (606)
T KOG0547|consen  466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA-APLVHKALLVLQWKEDINQAENLLRKAIELDP--KCEQAYET  542 (606)
T ss_pred             HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc-hhhhhhhHhhhchhhhHHHHHHHHHHHHccCc--hHHHHHHH
Confidence            99999999999999999999999999999      53 556666655432 3889999999999999999  78899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          394 KAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       394 la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +|.+..++|+.++|++.|++++.+.....+
T Consensus       543 laq~~lQ~~~i~eAielFEksa~lArt~~E  572 (606)
T KOG0547|consen  543 LAQFELQRGKIDEAIELFEKSAQLARTESE  572 (606)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999988765443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3e-23  Score=206.19  Aligned_cols=307  Identities=16%  Similarity=0.052  Sum_probs=248.3

Q ss_pred             HHHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHH
Q 013375            7 SLLLEAIFLKAKCLQGLG--RFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIM   84 (444)
Q Consensus         7 ~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~   84 (444)
                      ..+.+.+...|+-+..+-  +.++|+..|.. +       |...+..           .-++-++|..|+..+++++|..
T Consensus       314 ~~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt-----------~wvl~q~GrayFEl~~Y~~a~~  374 (638)
T KOG1126|consen  314 SELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNT-----------GWVLSQLGRAYFELIEYDQAER  374 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCc-----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666555554  34466666655 2       2222321           1378889999999999999999


Q ss_pred             HHHHHhCcCCCCChHHHHHH-HHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013375           85 SYRRALLPCWNLDAETTAKL-QKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI  163 (444)
Q Consensus        85 ~y~~aL~~~~~~~~~~~~~l-~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~  163 (444)
                      +|+.+-++    +|-..... ..--..+++..                       +=++..    +.+..+..+|+.|+.
T Consensus       375 ~F~~~r~~----~p~rv~~meiyST~LWHLq~-----------------------~v~Ls~----Laq~Li~~~~~sPes  423 (638)
T KOG1126|consen  375 IFSLVRRI----EPYRVKGMEIYSTTLWHLQD-----------------------EVALSY----LAQDLIDTDPNSPES  423 (638)
T ss_pred             HHHHHHhh----ccccccchhHHHHHHHHHHh-----------------------hHHHHH----HHHHHHhhCCCCcHH
Confidence            99999888    44211000 00001111110                       011111    134556888999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013375          164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE  243 (444)
Q Consensus       164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~  243 (444)
                      |--+|+.+..+++++.|+.+|+||++++|+.+-+|-.+|.-+..+..+|.|..+|++||  ..+|++..||+-+|-+++ 
T Consensus       424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~rhYnAwYGlG~vy~-  500 (638)
T KOG1126|consen  424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDPRHYNAWYGLGTVYL-  500 (638)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCchhhHHHHhhhhhee-
Confidence            99999999999999999999999999999999999999999999999999999999999  999999999998888865 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375          244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL  323 (444)
Q Consensus       244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l  323 (444)
                      +.++++.|.-+|++|+++.|.+     ......+|..+.+.           ++.++|+..|++|+ .+||.|+...|+.
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~n-----svi~~~~g~~~~~~-----------k~~d~AL~~~~~A~-~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSN-----SVILCHIGRIQHQL-----------KRKDKALQLYEKAI-HLDPKNPLCKYHR  563 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccc-----hhHHhhhhHHHHHh-----------hhhhHHHHHHHHHH-hcCCCCchhHHHH
Confidence            4689999999999999965543     45667788887654           67899999999999 9999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013375          324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       324 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~  384 (444)
                      |.++...+++++|+..+++.-++-|+. ..++..+|.++...|+.+.|+..|-=|.+++|+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            999999999999999999999999999 599999999999999999999999999999994

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.3e-22  Score=191.76  Aligned_cols=364  Identities=16%  Similarity=0.085  Sum_probs=274.7

Q ss_pred             HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHH---H---H------------HHHHHHHH
Q 013375           13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNR---A---V------------ELLPELWK   74 (444)
Q Consensus        13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---a---~------------~~l~~~~~   74 (444)
                      +|..|+.+.+.|....|+..+..++..        .|-+|++|..+...+..   +   .            ..++.+|.
T Consensus       167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~  238 (559)
T KOG1155|consen  167 LYLYGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ  238 (559)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence            577899999999999999999998865        35555544444322100   0   0            01223455


Q ss_pred             HhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHH
Q 013375           75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL  154 (444)
Q Consensus        75 ~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l  154 (444)
                      ...+.++++.-+.+.+.......    ..+..+.|.                    +...+.++++|+..+     +.+.
T Consensus       239 el~q~~e~~~k~e~l~~~gf~~~----~~i~~~~A~--------------------~~y~~rDfD~a~s~F-----eei~  289 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLSSVGFPNS----MYIKTQIAA--------------------ASYNQRDFDQAESVF-----EEIR  289 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcc----HHHHHHHHH--------------------HHhhhhhHHHHHHHH-----HHHH
Confidence            55577777777777666511111    112222222                    223455789998875     5567


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      +.+|-..+-.....+++.-..+-.+-.-.-+.+..++.-.++...-.|.-|.-.++.++|+..|++|+  ++||+...+|
T Consensus       290 knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL--kLNp~~~~aW  367 (559)
T KOG1155|consen  290 KNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL--KLNPKYLSAW  367 (559)
T ss_pred             hcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH--hcCcchhHHH
Confidence            78887777667777777766665555555566777887788888888999999999999999999999  8999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      .++|--+.. .++...|+..|++|+++.|.+     -+||+-||.+|..+           +.+.=|+-.|++|+ +..|
T Consensus       368 TLmGHEyvE-mKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim-----------~Mh~YaLyYfqkA~-~~kP  429 (559)
T KOG1155|consen  368 TLMGHEYVE-MKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIM-----------KMHFYALYYFQKAL-ELKP  429 (559)
T ss_pred             HHhhHHHHH-hcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHh-----------cchHHHHHHHHHHH-hcCC
Confidence            988776655 567789999999999966544     58999999999765           56778999999999 9999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh-------hcCCCCc
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD-------QTGKWEQ  387 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~-------~~P~~~~  387 (444)
                      +|+..|..||.+|.+.++.++|+++|++|+...... ..++..||.++...+++.+|..+|++-++       ..|  .-
T Consensus       430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~--~t  506 (559)
T KOG1155|consen  430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD--ET  506 (559)
T ss_pred             CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch--HH
Confidence            999999999999999999999999999999998887 49999999999999999999999999997       345  45


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccchhhhcc
Q 013375          388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCL  436 (444)
Q Consensus       388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~~~~  436 (444)
                      ..+...++.-+.+.+++++|..+..+++...+...++...---+.+++.
T Consensus       507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~  555 (559)
T KOG1155|consen  507 IKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA  555 (559)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            6777779999999999999999999988876655554443333344444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.8e-21  Score=186.81  Aligned_cols=212  Identities=12%  Similarity=0.050  Sum_probs=193.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                      +.++..+|.++..|..++.+|....+.++-...|.+|..++|.++++|++.|.+++-++++++|+.-|++++  .++|++
T Consensus       350 ~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai--~L~pe~  427 (606)
T KOG0547|consen  350 DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI--SLDPEN  427 (606)
T ss_pred             HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh--hcChhh
Confidence            577888999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013375          231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR  310 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~  310 (444)
                      +.++..++...|+ .+++++++..|+.++..+|.-     +.++.+.+.++..+           +++++|++.|++++ 
T Consensus       428 ~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~-----~Evy~~fAeiLtDq-----------qqFd~A~k~YD~ai-  489 (606)
T KOG0547|consen  428 AYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNC-----PEVYNLFAEILTDQ-----------QQFDKAVKQYDKAI-  489 (606)
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHhhH-----------HhHHHHHHHHHHHH-
Confidence            9999888777666 579999999999999998865     46788888888765           57999999999999 


Q ss_pred             hhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          311 STNMR------DLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       311 ~~~P~------~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ++.|.      ++..+.+-|.+..+ .+++..|+..+++|+++||... .++..||.+...+|+.++|+..|++++.+.-
T Consensus       490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999      88877777766554 5899999999999999999994 9999999999999999999999999998875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.91  E-value=8e-24  Score=202.37  Aligned_cols=263  Identities=20%  Similarity=0.111  Sum_probs=118.1

Q ss_pred             cCccccCCCcHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 013375          128 MGSSFVPRNNIEEAILLLMILLRKVALKR-IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYY  206 (444)
Q Consensus       128 ~~~~~~~~~~~~eAi~~l~~~~~~~~l~~-~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~  206 (444)
                      +..++...|++++|+..+.    +.+... .|+++.+|..+|.+....|+++.|+..|++++..++.++..+..++.+ .
T Consensus        14 ~A~~~~~~~~~~~Al~~L~----~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLK----KAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            3456777899999998762    223333 489999999999999999999999999999999999999999999998 7


Q ss_pred             HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375          207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK  286 (444)
Q Consensus       207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~  286 (444)
                      ..+++++|+..++++.  ...+ ++..+.....++ ...++++++...++++... ++..  .....|..+|.++.+.  
T Consensus        89 ~~~~~~~A~~~~~~~~--~~~~-~~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~-~~~~--~~~~~~~~~a~~~~~~--  159 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAY--ERDG-DPRYLLSALQLY-YRLGDYDEAEELLEKLEEL-PAAP--DSARFWLALAEIYEQL--  159 (280)
T ss_dssp             --------------------------------H-H-HHTT-HHHHHHHHHHHHH--T-----T-HHHHHHHHHHHHHC--
T ss_pred             cccccccccccccccc--cccc-ccchhhHHHHHH-HHHhHHHHHHHHHHHHHhc-cCCC--CCHHHHHHHHHHHHHc--
Confidence            9999999999999998  5444 344444344443 4568999999999998863 3211  1356788888888664  


Q ss_pred             hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375          287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK  366 (444)
Q Consensus       287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g  366 (444)
                               |+.++|+..|++++ +++|+|+.++..+++++...|+.+++...++...+..|+++ ..|..+|.++..+|
T Consensus       160 ---------G~~~~A~~~~~~al-~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~lg  228 (280)
T PF13429_consen  160 ---------GDPDKALRDYRKAL-ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQLG  228 (280)
T ss_dssp             ---------CHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHHT
T ss_pred             ---------CCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhcccc
Confidence                     67899999999999 99999999999999999999999999999999998889986 89999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       367 ~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      ++++|+.++++++..+|  +|+..+.++|.++...|+.++|+..+++++..
T Consensus       229 ~~~~Al~~~~~~~~~~p--~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  229 RYEEALEYLEKALKLNP--DDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             -HHHHHHHHHHHHHHST--T-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence            99999999999999999  99999999999999999999999999999764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.1e-20  Score=194.11  Aligned_cols=350  Identities=16%  Similarity=0.109  Sum_probs=261.6

Q ss_pred             HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375           11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL   90 (444)
Q Consensus        11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL   90 (444)
                      -+++-||...+..|+|-.|...|+.+|.+.+..    .|+.     .+         ..|-++.+.|+.+.|+..|.++|
T Consensus       165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~----~aD~-----rI---------gig~Cf~kl~~~~~a~~a~~ral  226 (1018)
T KOG2002|consen  165 LALLGKARIAYNKKDYRGALKYYKKALRINPAC----KADV-----RI---------GIGHCFWKLGMSEKALLAFERAL  226 (1018)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhcCccc----CCCc-----cc---------hhhhHHHhccchhhHHHHHHHHH
Confidence            456677888888889999999999988774332    2221     11         22456778999999999999999


Q ss_pred             CcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375           91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA  170 (444)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~  170 (444)
                      ++    ||.+..+ ...++.+.+.                 +.....+..++.++     ..+-..+|.+|.+..+|+.-
T Consensus       227 qL----dp~~v~a-lv~L~~~~l~-----------------~~d~~s~~~~~~ll-----~~ay~~n~~nP~~l~~LAn~  279 (1018)
T KOG2002|consen  227 QL----DPTCVSA-LVALGEVDLN-----------------FNDSDSYKKGVQLL-----QRAYKENNENPVALNHLANH  279 (1018)
T ss_pred             hc----ChhhHHH-HHHHHHHHHH-----------------ccchHHHHHHHHHH-----HHHHhhcCCCcHHHHHHHHH
Confidence            99    7765433 2334443222                 11223466666665     33457789999999999999


Q ss_pred             HHhcCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-hHHHHHHHHHHhcCCC
Q 013375          171 FSIAGDLSSLATQIEELLPGII---NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEYPD  246 (444)
Q Consensus       171 l~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-~~a~~~~~~~~~~~~~  246 (444)
                      +...|+|+.+....+.++...-   --++.+|++|.+++.+|+|++|...|.+++  +.+|++ +-.++.+|.++.. .|
T Consensus       280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i~-~~  356 (1018)
T KOG2002|consen  280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYIK-RG  356 (1018)
T ss_pred             HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHHH-hc
Confidence            9999999999999999988763   345669999999999999999999999999  889988 6667777777654 68


Q ss_pred             CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375          247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE  326 (444)
Q Consensus       247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~  326 (444)
                      +.++|+.+|++++...|.+.     .....||..|...+.       .....++|..+..+++ +..|.|.++|..+|.+
T Consensus       357 dle~s~~~fEkv~k~~p~~~-----etm~iLG~Lya~~~~-------~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql  423 (1018)
T KOG2002|consen  357 DLEESKFCFEKVLKQLPNNY-----ETMKILGCLYAHSAK-------KQEKRDKASNVLGKVL-EQTPVDSEAWLELAQL  423 (1018)
T ss_pred             hHHHHHHHHHHHHHhCcchH-----HHHHHHHhHHHhhhh-------hhHHHHHHHHHHHHHH-hcccccHHHHHHHHHH
Confidence            99999999999999777654     445667777665431       1234688999999999 8999999999999988


Q ss_pred             HHHcCCHHHHHHHHHHHHhh-----cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh-cCCC--C-----cHHHHHH
Q 013375          327 YAEQRKLNAAHYYAKMLLKL-----EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ-TGKW--E-----QGELLRT  393 (444)
Q Consensus       327 ~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~-~P~~--~-----~~~~~~~  393 (444)
                      +.. ++.-.++..|.+|+.+     .+ -|.+.++++|..++..|.+.+|...+.+|+.. .|..  +     +....||
T Consensus       424 ~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN  501 (1018)
T KOG2002|consen  424 LEQ-TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN  501 (1018)
T ss_pred             HHh-cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence            765 4555558888888732     23 23478888999999999999999999988865 2110  2     1235788


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          394 KAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       394 la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +|.++...++++.|.+.|+.++..+|..-+
T Consensus       502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId  531 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSILKEHPGYID  531 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHCchhHH
Confidence            999999999999999999999888886544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.2e-20  Score=180.05  Aligned_cols=295  Identities=17%  Similarity=0.103  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013375           65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL  144 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~  144 (444)
                      .+.+.|.++.+.|....|++.|..++..    -|-+...+ ..+.....                       ..+-+   
T Consensus       166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AW-leL~~lit-----------------------~~e~~---  214 (559)
T KOG1155|consen  166 LLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAW-LELSELIT-----------------------DIEIL---  214 (559)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHH-HHHHHhhc-----------------------hHHHH---
Confidence            5567889999999999999999999987    44332222 11111100                       00000   


Q ss_pred             HHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHh
Q 013375          145 LMILLRKVALKRIEW--DPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTL  221 (444)
Q Consensus       145 l~~~~~~~~l~~~p~--~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~g~~~~A~~~~~~a  221 (444)
                            .......|.  ..-.-..++.++....+.++++.-+++.+.. -|.++-.-...|.+.+.+.++++|+..|++.
T Consensus       215 ------~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei  288 (559)
T KOG1155|consen  215 ------SILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI  288 (559)
T ss_pred             ------HHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence                  001111232  2222345666666667777777777777666 5666666666677777777777777777777


Q ss_pred             hcCCCCCCC---hHHHHH-------------HH-----------------HHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013375          222 LSGSEDPKC---LPALLI-------------AS-----------------KICGEYPDLAEEGATFASRALECLGDGCDQ  268 (444)
Q Consensus       222 l~~~~~P~~---~~a~~~-------------~~-----------------~~~~~~~~~~~eA~~~~~~al~~~~~~~~~  268 (444)
                      +  +-+|=.   .+.+-+             ++                 +-++...++.+.|+.+|++++++ +|.   
T Consensus       289 ~--knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-Np~---  362 (559)
T KOG1155|consen  289 R--KNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL-NPK---  362 (559)
T ss_pred             H--hcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc-Ccc---
Confidence            7  556632   221110             00                 11233456889999999999995 443   


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375          269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG  348 (444)
Q Consensus       269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  348 (444)
                       ...+|..+|.-|..+           .+...|+++|++|+ +++|.|..+||.||++|..++...=|+-+|++|+++.|
T Consensus       363 -~~~aWTLmGHEyvEm-----------KNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP  429 (559)
T KOG1155|consen  363 -YLSAWTLMGHEYVEM-----------KNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP  429 (559)
T ss_pred             -hhHHHHHhhHHHHHh-----------cccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence             267999999988665           45689999999999 99999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013375          349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       349 ~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  418 (444)
                      +|+ ..|..||.+|.++++.+||+.+|.+|+....  .+..+++.+|+++.++++.++|...|++-++..
T Consensus       430 nDs-Rlw~aLG~CY~kl~~~~eAiKCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  430 NDS-RLWVALGECYEKLNRLEEAIKCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             Cch-HHHHHHHHHHHHhccHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            995 9999999999999999999999999999987  788999999999999999999999999999865

>PRK12370 invasion protein regulator; Provisional

Probab=99.89  E-value=2.4e-21  Score=202.04  Aligned_cols=242  Identities=12%  Similarity=-0.066  Sum_probs=205.7

Q ss_pred             CCCCHHHH--HHHHHHHHhc---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC---------CCchHHHHHHHHhh
Q 013375          157 IEWDPSIL--DHLSFAFSIA---GDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLL  222 (444)
Q Consensus       157 ~p~~~~~~--~~lg~~l~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---------g~~~~A~~~~~~al  222 (444)
                      .|.+.++|  +..|..+...   +.+++|++.|+++++++|+++.+|..+|.++...         +++++|+..+++++
T Consensus       252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            45566644  3445544332   4568999999999999999999999999987744         34799999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH
Q 013375          223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL  302 (444)
Q Consensus       223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~  302 (444)
                        .++|+++.++..+|.++. ..|++++|+..|+++++..|.+     ..+++.+|.++...           |++++|+
T Consensus       332 --~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~-----------G~~~eAi  392 (553)
T PRK12370        332 --ELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMA-----------GQLEEAL  392 (553)
T ss_pred             --hcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHC-----------CCHHHHH
Confidence              999999999998887754 4689999999999999965543     56899999998765           6799999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~  381 (444)
                      ..|++++ +++|+++.+++.++.++...|++++|+..+++++..+ |+++ .++.++|.++..+|++++|+..+++++..
T Consensus       393 ~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~-~~~~~la~~l~~~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        393 QTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP-ILLSMQVMFLSLKGKHELARKLTKEISTQ  470 (553)
T ss_pred             HHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH-HHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence            9999999 9999999988888888888999999999999999886 7774 88999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       382 ~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .|  ++..++..++.++...|  ++|...++++++....+..
T Consensus       471 ~~--~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~  508 (553)
T PRK12370        471 EI--TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN  508 (553)
T ss_pred             cc--hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence            99  88888999999988888  5888888888776554443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.7e-21  Score=190.19  Aligned_cols=251  Identities=14%  Similarity=0.083  Sum_probs=221.9

Q ss_pred             HHHHHhhCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013375          150 RKVALKRIEWDPSILD-HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP  228 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~-~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P  228 (444)
                      .+.++..+|-++..+. ++| .+.+.|+..+-...=.+.+...|+.+-.|+..|.-|+..|++.+|.+.|.++.  .+||
T Consensus       267 t~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat--~lD~  343 (611)
T KOG1173|consen  267 TEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT--TLDP  343 (611)
T ss_pred             hHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh--hcCc
Confidence            3567788888777665 455 88999999988888889999999999999999999999999999999999999  9999


Q ss_pred             CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375          229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA  308 (444)
Q Consensus       229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a  308 (444)
                      ....+|+..|-.+ .-.+..++|+.+|.+|-+..++..     ...+++|.-|..           .+.+.-|.+.|.+|
T Consensus       344 ~fgpaWl~fghsf-a~e~EhdQAmaaY~tAarl~~G~h-----lP~LYlgmey~~-----------t~n~kLAe~Ff~~A  406 (611)
T KOG1173|consen  344 TFGPAWLAFGHSF-AGEGEHDQAMAAYFTAARLMPGCH-----LPSLYLGMEYMR-----------TNNLKLAEKFFKQA  406 (611)
T ss_pred             cccHHHHHHhHHh-hhcchHHHHHHHHHHHHHhccCCc-----chHHHHHHHHHH-----------hccHHHHHHHHHHH
Confidence            9999999887764 456899999999999999887643     456788887754           46789999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC----CC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG----SN--LKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       309 l~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      + .+.|.||-++..+|.+.+..+.+.+|+.+|++++..-++    ..  ...|.+||.++.++++|++|+..++++|...
T Consensus       407 ~-ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  407 L-AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             H-hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            9 999999999999999999999999999999999942222    10  2468999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      |  .++..+-..|-++..+|+++.|++.|.++|.+.|++.-
T Consensus       486 ~--k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  486 P--KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             C--CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            9  89999999999999999999999999999999998743

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=6.4e-22  Score=193.90  Aligned_cols=242  Identities=17%  Similarity=0.123  Sum_probs=205.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcC
Q 013375          165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY  244 (444)
Q Consensus       165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~  244 (444)
                      +..|..+.+.|+..+|+-+||.+++.+|.+.++|..||.+....++-..|+.++++|+  +++|+|..+++.++ |++..
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl--~LdP~NleaLmaLA-VSytN  365 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL--ELDPTNLEALMALA-VSYTN  365 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--hcCCccHHHHHHHH-HHHhh
Confidence            4678899999999999999999999999999999999999999999999999999999  99999999998765 55667


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh-chHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI-TDFDRATRQAKALQALVSAARSTNM--RDLSILY  321 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~-~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~  321 (444)
                      .|.-.+|..++++=|...|+.         ..+...-.. +.... ........+..-.+.|-.+. ..+|  .||+++.
T Consensus       366 eg~q~~Al~~L~~Wi~~~p~y---------~~l~~a~~~-~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~  434 (579)
T KOG1125|consen  366 EGLQNQALKMLDKWIRNKPKY---------VHLVSAGEN-EDFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQS  434 (579)
T ss_pred             hhhHHHHHHHHHHHHHhCccc---------hhccccCcc-ccccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHh
Confidence            788889999999888854331         111111000 00000 00001234566778999999 9999  8999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~  401 (444)
                      -||.+|...|++++|+++|+.||..+|++ ...|+.||..+..-.+..||+.+|++|+++.|  ....+++++|...+.+
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd-~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQVKPND-YLLWNRLGATLANGNRSEEAISAYNRALQLQP--GYVRVRYNLGISCMNL  511 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcCCch-HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--Ceeeeehhhhhhhhhh
Confidence            99999999999999999999999999999 59999999999999999999999999999999  8999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhh
Q 013375          402 GQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       402 g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      |-|++|+.+|-.||.+.++..+
T Consensus       512 G~ykEA~~hlL~AL~mq~ks~~  533 (579)
T KOG1125|consen  512 GAYKEAVKHLLEALSMQRKSRN  533 (579)
T ss_pred             hhHHHHHHHHHHHHHhhhcccc
Confidence            9999999999999999998443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.89  E-value=7e-21  Score=175.50  Aligned_cols=299  Identities=14%  Similarity=0.100  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHH
Q 013375           60 ETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIE  139 (444)
Q Consensus        60 ~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (444)
                      +.|-.|....|.+++++|++++|+.-|+.+|.-+++...  ....+.+++..--       ..+...++. .+...|+..
T Consensus       103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~--~~eaqskl~~~~e-------~~~l~~ql~-s~~~~GD~~  172 (504)
T KOG0624|consen  103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL--VLEAQSKLALIQE-------HWVLVQQLK-SASGSGDCQ  172 (504)
T ss_pred             ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch--hHHHHHHHHhHHH-------HHHHHHHHH-HHhcCCchh
Confidence            345667778888999999999999999999998322111  1112223221100       000001111 233457778


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375          140 EAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       140 eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      .+|..+     ..++...|++...+...+.+|...|++..||.-++.+-++..++++.+|....+++..|+.+.++...+
T Consensus       173 ~ai~~i-----~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  173 NAIEMI-----THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             hHHHHH-----HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            888764     567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH
Q 013375          220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA  299 (444)
Q Consensus       220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  299 (444)
                      +||  +++|++-..+-.     |.+..+....+...+++++                                  .+++.
T Consensus       248 ECL--KldpdHK~Cf~~-----YKklkKv~K~les~e~~ie----------------------------------~~~~t  286 (504)
T KOG0624|consen  248 ECL--KLDPDHKLCFPF-----YKKLKKVVKSLESAEQAIE----------------------------------EKHWT  286 (504)
T ss_pred             HHH--ccCcchhhHHHH-----HHHHHHHHHHHHHHHHHHh----------------------------------hhhHH
Confidence            999  899998754421     2222222233333333322                                  24677


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          300 KALQALVSAARSTNMRDLSILY----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       300 eA~~~~~~al~~~~P~~~~a~~----~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      ++++..++++ +.+|..+.+.+    .+..++..-|++.+|+..+.++|.++|++ +.++...+..|..-..|++|+..|
T Consensus       287 ~cle~ge~vl-k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dy  364 (504)
T KOG0624|consen  287 ECLEAGEKVL-KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDY  364 (504)
T ss_pred             HHHHHHHHHH-hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHH
Confidence            8888888888 88888666554    34667777788888888888888888888 588888888888888888888888


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHH--H-H--------------HhCCHHHHHHHHHHHHHHH
Q 013375          376 NAALDQTGKWEQGELLRTKAKV--Q-L--------------VQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~--~-~--------------~~g~~~~A~~~~~~al~l~  418 (444)
                      ++|.+.+|  +|-.+.-.+-.+  + .              +.-...+-..+|+++-.-|
T Consensus       365 e~A~e~n~--sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkW  422 (504)
T KOG0624|consen  365 EKALELNE--SNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKW  422 (504)
T ss_pred             HHHHhcCc--ccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhc
Confidence            88888888  554443222111  1 1              1223456778888875444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.88  E-value=1.9e-20  Score=180.05  Aligned_cols=239  Identities=13%  Similarity=0.011  Sum_probs=181.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375          134 PRNNIEEAILLLMILLRKVALKRIE----WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG  209 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~~~~l~~~p----~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g  209 (444)
                      +.++.+.+|..+     ..++...|    ..+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|
T Consensus        38 ~~~~~e~~i~~~-----~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g  112 (296)
T PRK11189         38 PTLQQEVILARL-----NQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG  112 (296)
T ss_pred             CchHHHHHHHHH-----HHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence            345566777654     34554333    346789999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh
Q 013375          210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI  289 (444)
Q Consensus       210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~  289 (444)
                      ++++|+..|++++  +++|++..++..+|.+++ ..|++++|+..++++++..|.++  . ...|..++.          
T Consensus       113 ~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~--~-~~~~~~l~~----------  176 (296)
T PRK11189        113 NFDAAYEAFDSVL--ELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDP--Y-RALWLYLAE----------  176 (296)
T ss_pred             CHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCH--H-HHHHHHHHH----------
Confidence            9999999999999  999999999988877654 57999999999999999655442  1 112222221          


Q ss_pred             chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH--HHH----HHHHHhhcCCCChHHHHHHHHHHH
Q 013375          290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAA--HYY----AKMLLKLEGGSNLKGWLLMARILS  363 (444)
Q Consensus       290 ~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A--~~~----~~~al~l~P~~~~~~~~~la~~l~  363 (444)
                          ..+++++|+..|++++ ...+.+  .|. .+.+....|++.++  +..    ++++++++|+. .++|+++|.++.
T Consensus       177 ----~~~~~~~A~~~l~~~~-~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~  247 (296)
T PRK11189        177 ----SKLDPKQAKENLKQRY-EKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERL-CETYFYLAKYYL  247 (296)
T ss_pred             ----ccCCHHHHHHHHHHHH-hhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHH
Confidence                1356899999998877 554332  222 45666667776443  322    23334777887 599999999999


Q ss_pred             HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013375          364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ  403 (444)
Q Consensus       364 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~  403 (444)
                      .+|++++|+.+|++|++.+|. ++.+..+.+..+....++
T Consensus       248 ~~g~~~~A~~~~~~Al~~~~~-~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        248 SLGDLDEAAALFKLALANNVY-NFVEHRYALLELALLGQD  286 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhh
Confidence            999999999999999999963 567766666555544333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.88  E-value=9.6e-21  Score=182.10  Aligned_cols=249  Identities=14%  Similarity=0.011  Sum_probs=187.2

Q ss_pred             HhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHH
Q 013375           75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL  154 (444)
Q Consensus        75 ~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l  154 (444)
                      ..++.+.++..+.++|...+ .+|..........+.                    ++...|++++|+..+     +.++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~--------------------~~~~~g~~~~A~~~~-----~~Al   91 (296)
T PRK11189         38 PTLQQEVILARLNQILASRD-LTDEERAQLHYERGV--------------------LYDSLGLRALARNDF-----SQAL   91 (296)
T ss_pred             CchHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHH--------------------HHHHCCCHHHHHHHH-----HHHH
Confidence            45788999999999997522 244332222233332                    345578899998875     5567


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      +.+|+++.+|+.+|.++...|++++|++.|+++++++|++..+|+++|.++...|++++|+..|++++  +.+|+++...
T Consensus        92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al--~~~P~~~~~~  169 (296)
T PRK11189         92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY--QDDPNDPYRA  169 (296)
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999  8999998422


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      +.. . .....++.++|+..+.+++...+++. .....+.+.+|....            ...++.+.+.++..+ +++|
T Consensus       170 ~~~-~-l~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~lg~~~~------------~~~~~~~~~~~~~~~-~l~~  233 (296)
T PRK11189        170 LWL-Y-LAESKLDPKQAKENLKQRYEKLDKEQ-WGWNIVEFYLGKISE------------ETLMERLKAGATDNT-ELAE  233 (296)
T ss_pred             HHH-H-HHHccCCHHHHHHHHHHHHhhCCccc-cHHHHHHHHccCCCH------------HHHHHHHHhcCCCcH-HHHH
Confidence            211 1 23446789999999988876544331 111223333333211            123455666677788 8899


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR  367 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~  367 (444)
                      +.+++|+++|.++..+|++++|+.+|++|++++|.+.++..+.+..+....++
T Consensus       234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999974325666665555444333

>PRK12370 invasion protein regulator; Provisional

Probab=99.88  E-value=1.3e-20  Score=196.53  Aligned_cols=247  Identities=12%  Similarity=-0.039  Sum_probs=204.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013375          137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA---------GDLSSLATQIEELLPGIINRKERYHILALCYYG  207 (444)
Q Consensus       137 ~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~  207 (444)
                      .+++|+..+     +.+++.+|+++.+|..+|.++...         +++++|+..++++++++|+++++|..+|.++..
T Consensus       276 ~~~~A~~~~-----~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~  350 (553)
T PRK12370        276 SLQQALKLL-----TQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI  350 (553)
T ss_pred             HHHHHHHHH-----HHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            466777765     566789999999999999877633         458999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013375          208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV  287 (444)
Q Consensus       208 ~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~  287 (444)
                      .|++++|+..|++++  +++|+++.+++.+|.++. ..|++++|+.+++++++..|.+.     .+++.++.++..    
T Consensus       351 ~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~-----~~~~~~~~~~~~----  418 (553)
T PRK12370        351 HSEYIVGSLLFKQAN--LLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRA-----AAGITKLWITYY----  418 (553)
T ss_pred             ccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHh----
Confidence            999999999999999  999999999998887765 57999999999999999655432     233344443433    


Q ss_pred             hhchHHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375          288 AITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK  366 (444)
Q Consensus       288 ~~~~~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g  366 (444)
                             .|++++|+..+++++ ..+ |+++.++.++|.++..+|++++|...+++.....|++ ..++..++.++...|
T Consensus       419 -------~g~~eeA~~~~~~~l-~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  489 (553)
T PRK12370        419 -------HTGIDDAIRLGDELR-SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNS  489 (553)
T ss_pred             -------ccCHHHHHHHHHHHH-HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccH
Confidence                   357899999999999 775 8899999999999999999999999999999999998 599999999998888


Q ss_pred             CHHHHHHHHHHHHhh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          367 RYEDAETILNAALDQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       367 ~~~eA~~~~~~al~~---~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      +  +|...+++.++.   .|  .++.   ....++.-.|+.+.+... +++.+-
T Consensus       490 ~--~a~~~l~~ll~~~~~~~--~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        490 E--RALPTIREFLESEQRID--NNPG---LLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             H--HHHHHHHHHHHHhhHhh--cCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            4  777777776654   34  3322   377778888888888777 666554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.9e-19  Score=175.97  Aligned_cols=342  Identities=14%  Similarity=0.023  Sum_probs=255.1

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-------HHHhhhcCC-------------CCCC-----------
Q 013375            3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILD-------IVESSFAEG-------------FPEN-----------   51 (444)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~-------------~~~~-----------   51 (444)
                      .+.|++-.-..+.+|+.|..+..+++|...|+.+|-       .+++..+.+             .|..           
T Consensus       134 ~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~  213 (611)
T KOG1173|consen  134 DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLE  213 (611)
T ss_pred             cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHH
Confidence            456777777888999999999999999988888751       111111100             0000           


Q ss_pred             ----------C----------CccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHH
Q 013375           52 ----------L----------GADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIF  111 (444)
Q Consensus        52 ----------~----------~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~  111 (444)
                                +          ..-+++++. .+.+.-.+..++..+++.+-...+...++.    ||-+..-+-..+|.+
T Consensus       214 ~lyel~~~k~~n~~~~~r~~~~sl~~l~~~-~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l  288 (611)
T KOG1173|consen  214 ILYELKLCKNRNEESLTRNEDESLIGLAEN-LDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACL  288 (611)
T ss_pred             HHHHhhhhhhccccccccCchhhhhhhhhc-HHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHH
Confidence                      0          000011111 122222335577888999999999999988    443332233334422


Q ss_pred             HhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 013375          112 LLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI  191 (444)
Q Consensus       112 ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~  191 (444)
                      .-                     .|+   .-.++..  ........|+.+-.|+-.|.-|...|++.+|..+|.++..++
T Consensus       289 ~e---------------------l~~---~n~Lf~l--sh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD  342 (611)
T KOG1173|consen  289 YE---------------------LGK---SNKLFLL--SHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD  342 (611)
T ss_pred             HH---------------------hcc---cchHHHH--HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence            11                     111   1112222  244568899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                      |....+|..+|.++...|..++|+.+|..|-  ++-|+.....+++|- -+...+..+-|..+|..|+.+.|.++     
T Consensus       343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa--rl~~G~hlP~LYlgm-ey~~t~n~kLAe~Ff~~A~ai~P~Dp-----  414 (611)
T KOG1173|consen  343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA--RLMPGCHLPSLYLGM-EYMRTNNLKLAEKFFKQALAIAPSDP-----  414 (611)
T ss_pred             ccccHHHHHHhHHhhhcchHHHHHHHHHHHH--HhccCCcchHHHHHH-HHHHhccHHHHHHHHHHHHhcCCCcc-----
Confidence            9999999999999999999999999999999  899986555555554 45667899999999999999877653     


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC----C---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR----D---LSILYRLSLEYAEQRKLNAAHYYAKMLL  344 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~----~---~~a~~~lg~~~~~~g~~~~A~~~~~~al  344 (444)
                      .....+|.+....           +.+.+|...|+.++ ..-+.    .   ...+.|||.++.+.+++++|+.+|+++|
T Consensus       415 lv~~Elgvvay~~-----------~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  415 LVLHELGVVAYTY-----------EEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL  482 (611)
T ss_pred             hhhhhhhheeehH-----------hhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            5677889887653           46899999999988 53322    2   2347999999999999999999999999


Q ss_pred             hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       345 ~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      .+.|.+ +.++..+|.++..+|+++.|+++|.+||.+.|  ++..+--.++.+.
T Consensus       483 ~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~l~p--~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  483 LLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALALKP--DNIFISELLKLAI  533 (611)
T ss_pred             HcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC--ccHHHHHHHHHHH
Confidence            999999 59999999999999999999999999999999  7766555555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.87  E-value=8.9e-20  Score=167.50  Aligned_cols=203  Identities=18%  Similarity=0.146  Sum_probs=138.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS  238 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~  238 (444)
                      ..+.++..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+..|++++  ..+|++..++..++
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~  106 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL--TLNPNNGDVLNNYG  106 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHH
Confidence            3467888999999999999999999999999999999999999999999999999999999999  88888877766555


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~  318 (444)
                      .++. ..|++++|+..++++++. +                                                ..|..+.
T Consensus       107 ~~~~-~~g~~~~A~~~~~~~~~~-~------------------------------------------------~~~~~~~  136 (234)
T TIGR02521       107 TFLC-QQGKYEQAMQQFEQAIED-P------------------------------------------------LYPQPAR  136 (234)
T ss_pred             HHHH-HcccHHHHHHHHHHHHhc-c------------------------------------------------ccccchH
Confidence            5432 345555555555555541 1                                                1133444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      .++++|.++...|++++|...+++++..+|+++ .++..+|.++...|++++|+.++++++...|  ++...+..++.++
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~  213 (234)
T TIGR02521       137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-ESLLELAELYYLRGQYKDARAYLERYQQTYN--QTAESLWLGIRIA  213 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence            555566666666666666666666666666653 5566666666666666666666666665555  4555555566666


Q ss_pred             HHhCCHHHHHHHHHHHHH
Q 013375          399 LVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~  416 (444)
                      ...|+.++|....+.+..
T Consensus       214 ~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       214 RALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHhhHHHHHHHHHHHHh
Confidence            666666666555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=1.4e-18  Score=185.55  Aligned_cols=174  Identities=14%  Similarity=0.060  Sum_probs=131.8

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      .+..|..++...+.|++++|+..|+++++..        |.+.           .++.-+..++...|+.++|+.+++++
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--------P~~~-----------~av~dll~l~~~~G~~~~A~~~~eka   94 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--------PLQS-----------GQVDDWLQIAGWAGRDQEVIDVYERY   94 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--------ccch-----------hhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence            4566899999999999999999999999873        3321           11223445667789999999999999


Q ss_pred             hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375           90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF  169 (444)
Q Consensus        90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~  169 (444)
                      +..    +|..... ...+|.                    ++..+|++++|+.++     +.+++.+|++++++..++.
T Consensus        95 ~~p----~n~~~~~-llalA~--------------------ly~~~gdyd~Aiely-----~kaL~~dP~n~~~l~gLa~  144 (822)
T PRK14574         95 QSS----MNISSRG-LASAAR--------------------AYRNEKRWDQALALW-----QSSLKKDPTNPDLISGMIM  144 (822)
T ss_pred             ccC----CCCCHHH-HHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHhhCCCCHHHHHHHHH
Confidence            943    2221111 111222                    344567899999886     5678889999999998889


Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      ++...|+.++|++.++++++.+|++... ..++.++...++..+|+..|++++  ..+|++..++.
T Consensus       145 ~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll--~~~P~n~e~~~  207 (822)
T PRK14574        145 TQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV--RLAPTSEEVLK  207 (822)
T ss_pred             HHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH--HhCCCCHHHHH
Confidence            9999999999999999999999986554 556666666788877999999999  89999887654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.2e-19  Score=176.72  Aligned_cols=372  Identities=12%  Similarity=0.014  Sum_probs=209.0

Q ss_pred             HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCC-------------------ccccHHHHHHHHHHHHHHHH
Q 013375           13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLG-------------------ADCKLQETLNRAVELLPELW   73 (444)
Q Consensus        13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~~a~~~l~~~~   73 (444)
                      .-.+|...+..|+|+.|+..|..+|.+.+.    +..-++.                   ...++.|.+..++.+.|..+
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~----nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT----NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCC----ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence            446899999999999999999999876322    1111110                   13355666889999999999


Q ss_pred             HHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhh---cCCCCCCccc-------------------------
Q 013375           74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYC---GGETCPPNLR-------------------------  125 (444)
Q Consensus        74 ~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~---~~~~~~~~~~-------------------------  125 (444)
                      +-.|++++|+..|.+.|+.    ||.|.. +...++......   +....-|...                         
T Consensus        81 ~~lg~~~eA~~ay~~GL~~----d~~n~~-L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~  155 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEK----DPSNKQ-LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII  155 (539)
T ss_pred             HhcccHHHHHHHHHHHhhc----CCchHH-HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence            9999999999999999999    887643 223333322111   0000000000                         


Q ss_pred             ----cccCccccCCCcHHHHHHHHHHH-----HHHHHH----hhCC---------------------CCHHHHHHHHHHH
Q 013375          126 ----SQMGSSFVPRNNIEEAILLLMIL-----LRKVAL----KRIE---------------------WDPSILDHLSFAF  171 (444)
Q Consensus       126 ----~~~~~~~~~~~~~~eAi~~l~~~-----~~~~~l----~~~p---------------------~~~~~~~~lg~~l  171 (444)
                          .++ ..+..-.+...+...++..     ......    ...|                     .-....-.+|.+.
T Consensus       156 ~~~p~~l-~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa  234 (539)
T KOG0548|consen  156 QKNPTSL-KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA  234 (539)
T ss_pred             hcCcHhh-hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence                000 1111122223333222110     000000    0011                     0122456899999


Q ss_pred             HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH------HHHHhcCC
Q 013375          172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA------SKICGEYP  245 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~------~~~~~~~~  245 (444)
                      ....+++.|++.|..++.++ .+...+.+.|.+|+..|.+.+.+.....++  ...-....-+.++      .+-.+...
T Consensus       235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~--E~gre~rad~klIak~~~r~g~a~~k~  311 (539)
T KOG0548|consen  235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV--EVGRELRADYKLIAKALARLGNAYTKR  311 (539)
T ss_pred             HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH--HHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            99999999999999999999 999999999999999999999998888888  3333221111111      12234456


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375          246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL  325 (444)
Q Consensus       246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~  325 (444)
                      ++++.|+.+|.+++..... ++            +..           +....++++...+... -++|.-..-.-.-|.
T Consensus       312 ~~~~~ai~~~~kaLte~Rt-~~------------~ls-----------~lk~~Ek~~k~~e~~a-~~~pe~A~e~r~kGn  366 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRT-PD------------LLS-----------KLKEAEKALKEAERKA-YINPEKAEEEREKGN  366 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcC-HH------------HHH-----------HHHHHHHHHHHHHHHH-hhChhHHHHHHHHHH
Confidence            8899999999998874321 10            110           1122344444444444 444444444444444


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK  405 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~  405 (444)
                      .+...|+|.+|+..|.+|+..+|+++ ..|.+.|.+|.++|.+.+|+..++++++++|  ++..+|+..|.++..+.+|+
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~P~Da-~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--~~~kgy~RKg~al~~mk~yd  443 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRDPEDA-RLYSNRAACYLKLGEYPEALKDAKKCIELDP--NFIKAYLRKGAALRAMKEYD  443 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444442 4444444444444444444444444444444  44444444444444444444


Q ss_pred             HHHHHHHHHHHHHHhhhhhc
Q 013375          406 GAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       406 ~A~~~~~~al~l~~~~~~~~  425 (444)
                      .|+++|.+++++.|++.+..
T Consensus       444 kAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  444 KALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHHHHHHHHhcCchhHHHH
Confidence            44444444444444444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=2.7e-20  Score=182.56  Aligned_cols=257  Identities=16%  Similarity=0.118  Sum_probs=202.9

Q ss_pred             CccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Q 013375          129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA  208 (444)
Q Consensus       129 ~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~  208 (444)
                      +-.+++.|.+-+|+..+     +++++++|.+.++|..||.+....++-..|+..++++++++|+|.++...||..|...
T Consensus       292 G~~lm~nG~L~~A~Laf-----EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe  366 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAF-----EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE  366 (579)
T ss_pred             HHHHHhcCCchHHHHHH-----HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence            34556677777887764     6778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013375          209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICG--------EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS  280 (444)
Q Consensus       209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~--------~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~  280 (444)
                      |.-.+|..++++.|  .-.|.......  +..--        .....+..-...|-.+....+..   ..+..+.-||+.
T Consensus       367 g~q~~Al~~L~~Wi--~~~p~y~~l~~--a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~---~DpdvQ~~LGVL  439 (579)
T KOG1125|consen  367 GLQNQALKMLDKWI--RNKPKYVHLVS--AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK---IDPDVQSGLGVL  439 (579)
T ss_pred             hhHHHHHHHHHHHH--HhCccchhccc--cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC---CChhHHhhhHHH
Confidence            99999999999999  67776432111  00000        00011112223344444434421   125678889998


Q ss_pred             hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013375          281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR  360 (444)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~  360 (444)
                      |...           +.|++|+.+|+.|+ ..+|+|...|+.||.+++...+.++|+..|++|+.|.|.+ +.++++||.
T Consensus       440 y~ls-----------~efdraiDcf~~AL-~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgI  506 (579)
T KOG1125|consen  440 YNLS-----------GEFDRAVDCFEAAL-QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGI  506 (579)
T ss_pred             Hhcc-----------hHHHHHHHHHHHHH-hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhh
Confidence            8754           67999999999999 9999999999999999999999999999999999999999 699999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhcCCC----C----cHHHHHHHHHHHHHhCCHHHHHHH
Q 013375          361 ILSAQKRYEDAETILNAALDQTGKW----E----QGELLRTKAKVQLVQGQLKGAVET  410 (444)
Q Consensus       361 ~l~~~g~~~eA~~~~~~al~~~P~~----~----~~~~~~~la~~~~~~g~~~~A~~~  410 (444)
                      .++.+|-|+||+.+|-.||...++.    +    +..+|-.+-.++...++.|-+..+
T Consensus       507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            9999999999999999999887741    1    124666666666677776644443

>TIGR00540 hemY_coli hemY protein

Probab=99.84  E-value=4e-18  Score=171.54  Aligned_cols=302  Identities=11%  Similarity=-0.020  Sum_probs=226.1

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013375           69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL  148 (444)
Q Consensus        69 l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~  148 (444)
                      -|.+....|+++.|.....++.+..  ++|....   ...|+                    +...+|++++|...+   
T Consensus        90 ~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~---llaA~--------------------aa~~~g~~~~A~~~l---  141 (409)
T TIGR00540        90 EALLKLAEGDYAKAEKLIAKNADHA--AEPVLNL---IKAAE--------------------AAQQRGDEARANQHL---  141 (409)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHH---HHHHH--------------------HHHHCCCHHHHHHHH---
Confidence            4567788999999999999998872  1222110   11122                    223467889998876   


Q ss_pred             HHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC
Q 013375          149 LRKVALKRIEWDP-SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED  227 (444)
Q Consensus       149 ~~~~~l~~~p~~~-~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~  227 (444)
                        ..+.+..|++. .+....+.++...|+++.|.+.+++.++..|+++.++..++.++...|++++|+..+.+.+  +..
T Consensus       142 --~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~--k~~  217 (409)
T TIGR00540       142 --EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA--KAG  217 (409)
T ss_pred             --HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HcC
Confidence              33456668775 5666679999999999999999999999999999999999999999999999999999999  554


Q ss_pred             CCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013375          228 PKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA  304 (444)
Q Consensus       228 P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~  304 (444)
                      +.++...   ...+...+...+..+++...+.++.+..|.. .......+..++..+..           .|++++|++.
T Consensus       218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~-----------~g~~~~A~~~  285 (409)
T TIGR00540       218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLID-----------CDDHDSAQEI  285 (409)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHH-----------CCChHHHHHH
Confidence            4333322   1111111111223344556777777755421 00124566777776654           4679999999


Q ss_pred             HHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHccCHHHHHHHHH--HH
Q 013375          305 LVSAARSTNMRDLSIL--YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILN--AA  378 (444)
Q Consensus       305 ~~~al~~~~P~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~l~~~g~~~eA~~~~~--~a  378 (444)
                      +++++ +..|++....  ..........++.+++++.++++++.+|++ .  ..+..+|+++...|++++|..+++  ++
T Consensus       286 l~~~l-~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a  363 (409)
T TIGR00540       286 IFDGL-KKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAA  363 (409)
T ss_pred             HHHHH-hhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence            99999 9999998642  333334444688999999999999999998 5  667799999999999999999999  68


Q ss_pred             HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      ++..|  ++.. +..+|.++.++|+.++|...|++++...-
T Consensus       364 ~~~~p--~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       364 CKEQL--DAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             hhcCC--CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            88889  5544 66999999999999999999999987654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.84  E-value=6.7e-21  Score=182.15  Aligned_cols=241  Identities=15%  Similarity=0.045  Sum_probs=109.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc-CC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELL-PG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al-~~-~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      .|. ... ..++.++...|++++|++++++.+ .. .|++++.|..+|.+....|++++|+..|++++  ..+|.++..+
T Consensus         6 ~~~-~~~-l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~--~~~~~~~~~~   81 (280)
T PF13429_consen    6 GPS-EEA-LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL--ASDKANPQDY   81 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            455 333 367999999999999999997665 44 48999999999999999999999999999999  8899888877


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC-
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-  313 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~-  313 (444)
                      ..++.+  ...+++++|+..+.++.+.. +++     ..+.....++.           +.++++++...++++. ... 
T Consensus        82 ~~l~~l--~~~~~~~~A~~~~~~~~~~~-~~~-----~~l~~~l~~~~-----------~~~~~~~~~~~l~~~~-~~~~  141 (280)
T PF13429_consen   82 ERLIQL--LQDGDPEEALKLAEKAYERD-GDP-----RYLLSALQLYY-----------RLGDYDEAEELLEKLE-ELPA  141 (280)
T ss_dssp             --------------------------------------------H-HH-----------HTT-HHHHHHHHHHHH-H-T-
T ss_pred             cccccc--cccccccccccccccccccc-ccc-----chhhHHHHHHH-----------HHhHHHHHHHHHHHHH-hccC
Confidence            666655  35689999999999988753 322     22222333332           2467889999999977 666 


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          314 -MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       314 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                       |+++..|+.+|.++.+.|+.++|+..|+++++++|++ ..++..++.++...|+++++...+....+..|  +++.+|.
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~~  218 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-PDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPDLWD  218 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHHHHH
Confidence             7899999999999999999999999999999999999 49999999999999999999999999888888  7888899


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      .+|.++..+|++++|+..|++++...|++...
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~  250 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLW  250 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred             HHHHHhcccccccccccccccccccccccccc
Confidence            99999999999999999999999999977654

>TIGR00540 hemY_coli hemY protein

Probab=99.84  E-value=7.9e-18  Score=169.38  Aligned_cols=301  Identities=12%  Similarity=0.014  Sum_probs=227.8

Q ss_pred             HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375           13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP   92 (444)
Q Consensus        13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~   92 (444)
                      ...+|+.-...|++++|.+...++.+.        .|..           ...+...+.++.+.|++++|..+|+++.+.
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~-----------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~  147 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADH--------AAEP-----------VLNLIKAAEAAQQRGDEARANQHLEEAAEL  147 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            356788888889999999988776553        2221           124456678899999999999999999987


Q ss_pred             CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013375           93 CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFS  172 (444)
Q Consensus        93 ~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~  172 (444)
                          .|.+...+....+.+                    +..+|++++|...+     +..++..|+++.++..++.++.
T Consensus       148 ----~p~~~l~~~~~~a~l--------------------~l~~~~~~~Al~~l-----~~l~~~~P~~~~~l~ll~~~~~  198 (409)
T TIGR00540       148 ----AGNDNILVEIARTRI--------------------LLAQNELHAARHGV-----DKLLEMAPRHKEVLKLAEEAYI  198 (409)
T ss_pred             ----CCcCchHHHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHH
Confidence                333211112222333                    33467899998875     5567888999999999999999


Q ss_pred             hcCCHHHHHHHHHhhcCCCCCCHHHHH----HHHHHHHHCCCchHHHHHHHHhhcCCCCC----CChHHHHHHHHHHhcC
Q 013375          173 IAGDLSSLATQIEELLPGIINRKERYH----ILALCYYGAGEDLVALNLLRTLLSGSEDP----KCLPALLIASKICGEY  244 (444)
Q Consensus       173 ~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~l~~~g~~~~A~~~~~~al~~~~~P----~~~~a~~~~~~~~~~~  244 (444)
                      ..|++++|.+.+++.++....++....    ....-+...+..+++...+.++.  ...|    +++.++...+..+ ..
T Consensus       199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~--~~~p~~~~~~~~l~~~~a~~l-~~  275 (409)
T TIGR00540       199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW--KNQPRHRRHNIALKIALAEHL-ID  275 (409)
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HHCCHHHhCCHHHHHHHHHHH-HH
Confidence            999999999999999987555444332    33333355566666777888888  6777    5888888777754 56


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH--HHHHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL--SILYR  322 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~--~a~~~  322 (444)
                      .|+.++|+..++++++..|++....   ...........           .++.+++++.+++++ +.+|+|+  ..+..
T Consensus       276 ~g~~~~A~~~l~~~l~~~pd~~~~~---~~~l~~~~~l~-----------~~~~~~~~~~~e~~l-k~~p~~~~~~ll~s  340 (409)
T TIGR00540       276 CDDHDSAQEIIFDGLKKLGDDRAIS---LPLCLPIPRLK-----------PEDNEKLEKLIEKQA-KNVDDKPKCCINRA  340 (409)
T ss_pred             CCChHHHHHHHHHHHhhCCCcccch---hHHHHHhhhcC-----------CCChHHHHHHHHHHH-HhCCCChhHHHHHH
Confidence            7999999999999999776553210   00111111111           245678999999999 9999999  89999


Q ss_pred             HHHHHHHcCCHHHHHHHHH--HHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375          323 LSLEYAEQRKLNAAHYYAK--MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~--~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~  381 (444)
                      +|+++.++|++++|.++|+  ++++.+|++  ..+..+|.++..+|+.++|..+|++++..
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~--~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDA--NDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999  688899985  45668999999999999999999999764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN02789 farnesyltranstransferase

Probab=99.84  E-value=7.6e-19  Score=169.12  Aligned_cols=221  Identities=9%  Similarity=0.034  Sum_probs=190.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLI  236 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P~~~~a~~~  236 (444)
                      |+..+++..+-.++...+++++|+..+.++|+++|++..+|+.+|.++..+| ++++++..+.+++  ..+|++..++..
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i--~~npknyqaW~~  111 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA--EDNPKNYQIWHH  111 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH--HHCCcchHHhHH
Confidence            4455566566666778899999999999999999999999999999999999 6799999999999  899999999988


Q ss_pred             HHHHHhcCCCC--HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          237 ASKICGEYPDL--AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       237 ~~~~~~~~~~~--~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      .+.+.. ..++  .++++.+++++++..|.+     ..+|.+.|.++...           +++++|++.+.+++ ++||
T Consensus       112 R~~~l~-~l~~~~~~~el~~~~kal~~dpkN-----y~AW~~R~w~l~~l-----------~~~~eeL~~~~~~I-~~d~  173 (320)
T PLN02789        112 RRWLAE-KLGPDAANKELEFTRKILSLDAKN-----YHAWSHRQWVLRTL-----------GGWEDELEYCHQLL-EEDV  173 (320)
T ss_pred             HHHHHH-HcCchhhHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHh-----------hhHHHHHHHHHHHH-HHCC
Confidence            776653 3454  368899999999965543     57999999988764           56899999999999 9999


Q ss_pred             CCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcC
Q 013375          315 RDLSILYRLSLEYAEQ---RKL----NAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTG  383 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~---g~~----~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~~P  383 (444)
                      .|..+|++.|.++...   |++    ++++.++.+++.++|++. .+|+.++.++..    ++++.+|+..+.+++...|
T Consensus       174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~-SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~  252 (320)
T PLN02789        174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE-SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS  252 (320)
T ss_pred             CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc-CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence            9999999999998876   333    578999999999999995 999999999988    4677889999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHh
Q 013375          384 KWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       384 ~~~~~~~~~~la~~~~~~  401 (444)
                        .+..++-.++.++...
T Consensus       253 --~s~~al~~l~d~~~~~  268 (320)
T PLN02789        253 --NHVFALSDLLDLLCEG  268 (320)
T ss_pred             --CcHHHHHHHHHHHHhh
Confidence              8899999999999763

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.83  E-value=1.6e-17  Score=170.21  Aligned_cols=99  Identities=20%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK  394 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l  394 (444)
                      ++++.++.++.+|...|++.+|+.++..++...+......|..+|.+|..+|.|++|+.+|++++.+.|  ++..+...+
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p--~~~D~Ri~L  489 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP--DNLDARITL  489 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CchhhhhhH
Confidence            567899999999999999999999999999988887567999999999999999999999999999999  999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHH
Q 013375          395 AKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       395 a~~~~~~g~~~~A~~~~~~al  415 (444)
                      +.++.++|+.++|++.+.+..
T Consensus       490 asl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  490 ASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHhcCCHHHHHHHHhccc
Confidence            999999999999999998876

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.83  E-value=1.8e-17  Score=167.20  Aligned_cols=264  Identities=19%  Similarity=0.090  Sum_probs=210.4

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013375          151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK  229 (444)
Q Consensus       151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~  229 (444)
                      +.+++.+|+|+.+.+.++.-|..+++.+.|.+..++++++ ..+++.+|..|+.++-..+|+.+|+.+.+.++  ...|+
T Consensus       468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al--~E~~~  545 (799)
T KOG4162|consen  468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL--EEFGD  545 (799)
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HHhhh
Confidence            5567889999999999999999999999999999999999 55689999999999999999999999999999  88898


Q ss_pred             ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------------------------hhhHHHHHhhhhhhhh
Q 013375          230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ-------------------------MESTANCLLGISLSAQ  284 (444)
Q Consensus       230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~-------------------------~~~~a~~~lg~~~~~~  284 (444)
                      |.........+-+ ..|+.++|+......+.........                         -........+.+- .+
T Consensus       546 N~~l~~~~~~i~~-~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~  623 (799)
T KOG4162|consen  546 NHVLMDGKIHIEL-TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQ  623 (799)
T ss_pred             hhhhchhhhhhhh-hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hh
Confidence            7654433333322 2567777777776666554311000                         0000011111111 11


Q ss_pred             hhhhh-----------------------------chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013375          285 SKVAI-----------------------------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA  335 (444)
Q Consensus       285 ~~~~~-----------------------------~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~  335 (444)
                      .....                             ..+.+.+..++|..++.++- .++|-.+..|+..|.++...|+.++
T Consensus       624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-~~~~l~~~~~~~~G~~~~~~~~~~E  702 (799)
T KOG4162|consen  624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-KIDPLSASVYYLRGLLLEVKGQLEE  702 (799)
T ss_pred             hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-hcchhhHHHHHHhhHHHHHHHhhHH
Confidence            10000                             00123466789999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH--HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET--ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~--~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      |...|..|+.+||++ +.+...+|.++...|+..-|..  .+..|++++|  .+.++|+.+|.++..+|+.++|.++|..
T Consensus       703 A~~af~~Al~ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--~n~eaW~~LG~v~k~~Gd~~~Aaecf~a  779 (799)
T KOG4162|consen  703 AKEAFLVALALDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--LNHEAWYYLGEVFKKLGDSKQAAECFQA  779 (799)
T ss_pred             HHHHHHHHHhcCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            999999999999999 4999999999999998888877  9999999999  9999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 013375          414 LLAALQVQT  422 (444)
Q Consensus       414 al~l~~~~~  422 (444)
                      ++.+.+..+
T Consensus       780 a~qLe~S~P  788 (799)
T KOG4162|consen  780 ALQLEESNP  788 (799)
T ss_pred             HHhhccCCC
Confidence            998876443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=7e-18  Score=159.18  Aligned_cols=247  Identities=15%  Similarity=0.058  Sum_probs=189.1

Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      ..+|.........|..+...|+++.-.....+.+..+.....-|+--|..++...++..|+..-+++|  +.+|++.+++
T Consensus       260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I--~~~~r~~~al  337 (564)
T KOG1174|consen  260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI--DSEPRNHEAL  337 (564)
T ss_pred             hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh--ccCcccchHH
Confidence            33444444444444444444444444444444444443344446666667777788889999999999  9999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      .+.|..+ ...++.++|+-.|+.+..+-|.+     -..|--|-.+|...           +++.||...-+.+. ..-|
T Consensus       338 ilKG~lL-~~~~R~~~A~IaFR~Aq~Lap~r-----L~~Y~GL~hsYLA~-----------~~~kEA~~~An~~~-~~~~  399 (564)
T KOG1174|consen  338 ILKGRLL-IALERHTQAVIAFRTAQMLAPYR-----LEIYRGLFHSYLAQ-----------KRFKEANALANWTI-RLFQ  399 (564)
T ss_pred             HhccHHH-HhccchHHHHHHHHHHHhcchhh-----HHHHHHHHHHHHhh-----------chHHHHHHHHHHHH-HHhh
Confidence            9888875 55789999999999999854433     23333333444433           56789999999999 9999


Q ss_pred             CCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          315 RDLSILYRLS-LEYAEQ-RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       315 ~~~~a~~~lg-~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                      .++.++-.+| .++... .--++|.+.++++++++|+. ..+-+.++.++..-|+++++++.+++++...|   +..++.
T Consensus       400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D~~LH~  475 (564)
T KOG1174|consen  400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---DVNLHN  475 (564)
T ss_pred             cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchHHHHHHHHHhhcc---ccHHHH
Confidence            9999999997 555543 45578999999999999999 69999999999999999999999999999999   447799


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      .+|.++..++.+++|++.|..+|.+.|+...+.
T Consensus       476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  476 HLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            999999999999999999999999999877643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.82  E-value=6.6e-19  Score=162.57  Aligned_cols=265  Identities=13%  Similarity=0.074  Sum_probs=215.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375          134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV  213 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~  213 (444)
                      ..+++..|+.-+     .+++..+|++..+++..|.+|..+|+...|+.-+.++|++.|+...+..+.|.+++.+|++++
T Consensus        50 a~~Q~sDALt~y-----HaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~  124 (504)
T KOG0624|consen   50 ARGQLSDALTHY-----HAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ  124 (504)
T ss_pred             HhhhHHHHHHHH-----HHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence            355676777653     677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCChH---HHHH------------HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013375          214 ALNLLRTLLSGSEDPKCLP---ALLI------------ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG  278 (444)
Q Consensus       214 A~~~~~~al~~~~~P~~~~---a~~~------------~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg  278 (444)
                      |+.-|+.+|  .-+|++-.   +.-.            .... ....|+...++.+....|++.|=+     +..+...+
T Consensus       125 A~~DF~~vl--~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s-~~~~GD~~~ai~~i~~llEi~~Wd-----a~l~~~Ra  196 (504)
T KOG0624|consen  125 AEADFDQVL--QHEPSNGLVLEAQSKLALIQEHWVLVQQLKS-ASGSGDCQNAIEMITHLLEIQPWD-----ASLRQARA  196 (504)
T ss_pred             HHHHHHHHH--hcCCCcchhHHHHHHHHhHHHHHHHHHHHHH-HhcCCchhhHHHHHHHHHhcCcch-----hHHHHHHH
Confidence            999999999  78886422   2111            1111 234688899999999999964422     34455566


Q ss_pred             hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHH--
Q 013375          279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL--  356 (444)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~--  356 (444)
                      .||...           |....||..++.+. ++..+|.+.+|.++.+++..|+.+.++...+.+|++||++. .++-  
T Consensus       197 kc~i~~-----------~e~k~AI~Dlk~as-kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK-~Cf~~Y  263 (504)
T KOG0624|consen  197 KCYIAE-----------GEPKKAIHDLKQAS-KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK-LCFPFY  263 (504)
T ss_pred             HHHHhc-----------CcHHHHHHHHHHHH-hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh-hHHHHH
Confidence            677554           45778888888888 88889999999999999999999999999999999999874 4432  


Q ss_pred             ------------------------------------------------HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375          357 ------------------------------------------------LMARILSAQKRYEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       357 ------------------------------------------------~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~  388 (444)
                                                                      .+-.++..-|++.+|+..+.++|+.+|  ++.
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~--~dv  341 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP--DDV  341 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc--hHH
Confidence                                                            122345566788999999999999999  899


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013375          389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS  426 (444)
Q Consensus       389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  426 (444)
                      .++.-++.++.....||.|+..|+++.+..++++....
T Consensus       342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE  379 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            99999999999999999999999999999998877443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=9.5e-18  Score=159.76  Aligned_cols=257  Identities=15%  Similarity=0.082  Sum_probs=139.0

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIA--GDLSSLATQIEELLPGIINRKERYHILALCYY  206 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~  206 (444)
                      .-+.++|.++.||+.+...     -+++. ....+-.+|...+..+  .++..|..+-+.++.++.-++.+..+.|.+-+
T Consensus       427 ~~~lk~~d~~~aieilkv~-----~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f  501 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVF-----EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF  501 (840)
T ss_pred             HHHHhccCHHHHHHHHHHH-----HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence            4567888999999876321     11111 1122334444444442  25556666666666666666666666666666


Q ss_pred             HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375          207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK  286 (444)
Q Consensus       207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~  286 (444)
                      ..|++++|...|+++|  .-+....+++++.|-. +..+|+.++|+.+|-+.-.++-.+     +.+++.++.+|...  
T Consensus       502 ~ngd~dka~~~ykeal--~ndasc~ealfniglt-~e~~~~ldeald~f~klh~il~nn-----~evl~qianiye~l--  571 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEAL--NNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILLNN-----AEVLVQIANIYELL--  571 (840)
T ss_pred             ecCcHHHHHHHHHHHH--cCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHh--
Confidence            6666666666666666  4555555555544333 344566666666666555543322     34555555555432  


Q ss_pred             hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375          287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK  366 (444)
Q Consensus       287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g  366 (444)
                               .+..+|++.+-++. .+-|+||.++..||.+|-+.|+-..|..++-..-+-.|-+ .+...-||..|....
T Consensus       572 ---------ed~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-ie~iewl~ayyidtq  640 (840)
T KOG2003|consen  572 ---------EDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-IETIEWLAAYYIDTQ  640 (840)
T ss_pred             ---------hCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-hHHHHHHHHHHHhhH
Confidence                     34556666666666 6666666666666666666555555555555555555554 344444455554444


Q ss_pred             CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       367 ~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      =.++|+.++++|--..|  +........+.++.+.|+|+.|++.|+..
T Consensus       641 f~ekai~y~ekaaliqp--~~~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  641 FSEKAINYFEKAALIQP--NQSKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             HHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            45555555555554555  33333334455555555555555555444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.81  E-value=9.3e-17  Score=160.92  Aligned_cols=253  Identities=12%  Similarity=0.038  Sum_probs=176.1

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWDPSIL-DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV  213 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~-~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~  213 (444)
                      +|++++|...+     ..+.+.+|++..+. ...+.++...|++++|.+.++++++.+|+++.++..++.+|...|++++
T Consensus       131 ~g~~~~A~~~l-----~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        131 RGDEARANQHL-----ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             CCCHHHHHHHH-----HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            55677777665     22345556554332 3447788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhhcCCCCCCChH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013375          214 ALNLLRTLLSGSEDPKCLP--------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS  285 (444)
Q Consensus       214 A~~~~~~al~~~~~P~~~~--------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~  285 (444)
                      |+..+.+..  +..+.++.        ++..+.......     +....+.++.+..|... .....++..++..+..  
T Consensus       206 a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~l~~~~~~~-----~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~--  275 (398)
T PRK10747        206 LLDILPSMA--KAHVGDEEHRAMLEQQAWIGLMDQAMAD-----QGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIE--  275 (398)
T ss_pred             HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHH--
Confidence            887777777  44443322        221111111111     22333444444333211 0123456666666654  


Q ss_pred             hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 013375          286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ  365 (444)
Q Consensus       286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~  365 (444)
                               .|+.++|.+.+++++ + .|.|+......+.+  ..++.+++++.+++.++.+|+++ ..+..+|.++..+
T Consensus       276 ---------~g~~~~A~~~L~~~l-~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~-~l~l~lgrl~~~~  341 (398)
T PRK10747        276 ---------CDDHDTAQQIILDGL-K-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP-LLWSTLGQLLMKH  341 (398)
T ss_pred             ---------CCCHHHHHHHHHHHH-h-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHC
Confidence                     357888999999998 7 55566555555544  34888999999999999999985 8888999999999


Q ss_pred             cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      |++++|..+|+++++..|  ++ ..+..++.++.++|+.++|..+|++++.+..
T Consensus       342 ~~~~~A~~~le~al~~~P--~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        342 GEWQEASLAFRAALKQRP--DA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             CCHHHHHHHHHHHHhcCC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            999999999999999988  54 4466788999999999999999999988764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.2e-16  Score=151.04  Aligned_cols=282  Identities=11%  Similarity=0.012  Sum_probs=226.1

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013375           64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL  143 (444)
Q Consensus        64 ~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~  143 (444)
                      .-+.-+|.++...|+.++|+..|++++.+    ||.+... ....|-+|-+                    .|+++.--.
T Consensus       233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----dpy~i~~-MD~Ya~LL~~--------------------eg~~e~~~~  287 (564)
T KOG1174|consen  233 HLMMALGKCLYYNGDYFQAEDIFSSTLCA----NPDNVEA-MDLYAVLLGQ--------------------EGGCEQDSA  287 (564)
T ss_pred             HHHHHHhhhhhhhcCchHHHHHHHHHhhC----Chhhhhh-HHHHHHHHHh--------------------ccCHhhHHH
Confidence            35556778999999999999999999999    7765332 1223332221                    233333222


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375          144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS  223 (444)
Q Consensus       144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~  223 (444)
                      +     ....+........-|+--+..+...+++..|+..-+++|+.+|.+.+++...|.++..+||.++|+-+|+.|. 
T Consensus       288 L-----~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq-  361 (564)
T KOG1174|consen  288 L-----MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ-  361 (564)
T ss_pred             H-----HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH-
Confidence            2     1223344444555677778888899999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-hhhhhhhhhhhchHHHHhhHHHHH
Q 013375          224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQSKVAITDFDRATRQAKAL  302 (444)
Q Consensus       224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~~~~~~~~~~~~~~~eA~  302 (444)
                       .+.|-....|-.+--. |.-.|++.||....+.++..++.+     ++++-.+| .++...-          ...++|.
T Consensus       362 -~Lap~rL~~Y~GL~hs-YLA~~~~kEA~~~An~~~~~~~~s-----A~~LtL~g~~V~~~dp----------~~rEKAK  424 (564)
T KOG1174|consen  362 -MLAPYRLEIYRGLFHS-YLAQKRFKEANALANWTIRLFQNS-----ARSLTLFGTLVLFPDP----------RMREKAK  424 (564)
T ss_pred             -hcchhhHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHhhcc-----hhhhhhhcceeeccCc----------hhHHHHH
Confidence             9999998887654443 445689999999999999987765     67778887 4444321          2358999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      +.+++++ +++|+...+...++-.+...|++++++..+++.+...||+  ..+..||.++..++.+++|+++|..|+.++
T Consensus       425 kf~ek~L-~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  425 KFAEKSL-KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHhhh-ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            9999999 9999999999999999999999999999999999999995  899999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHH
Q 013375          383 GKWEQGELLRTKAKVQ  398 (444)
Q Consensus       383 P~~~~~~~~~~la~~~  398 (444)
                      |  .+-.....+-.+.
T Consensus       502 P--~~~~sl~Gl~~lE  515 (564)
T KOG1174|consen  502 P--KSKRTLRGLRLLE  515 (564)
T ss_pred             c--cchHHHHHHHHHH
Confidence            9  6655554444433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.80  E-value=2.5e-16  Score=157.81  Aligned_cols=242  Identities=14%  Similarity=0.035  Sum_probs=123.3

Q ss_pred             HHHHHHH-HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH-HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013375          161 PSILDHL-SFAFSIAGDLSSLATQIEELLPGIINRKERY-HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS  238 (444)
Q Consensus       161 ~~~~~~l-g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~  238 (444)
                      +.+++.+ +.+....|+++.|...|+++.+.+|++..+. ...+.++...|++++|+..+++++  +.+|+++.++..++
T Consensus       117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~--~~~P~~~~al~ll~  194 (398)
T PRK10747        117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLL--EVAPRHPEVLRLAE  194 (398)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHH
Confidence            4444444 3333556666666666666666666554322 233566666666666666666666  56666666655555


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQME---STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR  315 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~  315 (444)
                      .++. ..|++++|+..+.+..+...-+++...   ..++..+.....           .....+...+.++... +..|+
T Consensus       195 ~~~~-~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~-----------~~~~~~~l~~~w~~lp-~~~~~  261 (398)
T PRK10747        195 QAYI-RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM-----------ADQGSEGLKRWWKNQS-RKTRH  261 (398)
T ss_pred             HHHH-HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-----------HhcCHHHHHHHHHhCC-HHHhC
Confidence            4443 345666666666555553222111110   012111111000           0011233333444443 34455


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      ++.++..+|..+...|+.++|.+.++++++. |.++ ......+.+  ..+++++++..+++.++.+|  +++..++.+|
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~-~l~~l~~~l--~~~~~~~al~~~e~~lk~~P--~~~~l~l~lg  335 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE-RLVLLIPRL--KTNNPEQLEKVLRQQIKQHG--DTPLLWSTLG  335 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-HHHHHHhhc--cCCChHHHHHHHHHHHhhCC--CCHHHHHHHH
Confidence            6666666666666666666666666666663 3332 333333333  22566666666666666666  5666666666


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          396 KVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       396 ~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .++...|++++|.+.|++++++.|+...
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence            6666666666666666666666554443

>PLN02789 farnesyltranstransferase

Probab=99.80  E-value=1.3e-17  Score=160.67  Aligned_cols=235  Identities=12%  Similarity=-0.011  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCc--hHH
Q 013375          138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGED--LVA  214 (444)
Q Consensus       138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~--~~A  214 (444)
                      .++|+.++     ..++..+|++..+|+..|.++...| ++++++..++++++.+|++..+|++.+.++...|+.  +++
T Consensus        53 serAL~lt-----~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         53 SPRALDLT-----ADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CHHHHHHH-----HHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence            44555543     4556777888888888888888887 568888888888888888888888888888888764  667


Q ss_pred             HHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHH
Q 013375          215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR  294 (444)
Q Consensus       215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~  294 (444)
                      +..+++++  ..+|+|..++...+.+. ...|++++++.++.++|+..+.+     ..+|+++|.++...+....    .
T Consensus       128 l~~~~kal--~~dpkNy~AW~~R~w~l-~~l~~~~eeL~~~~~~I~~d~~N-----~sAW~~R~~vl~~~~~l~~----~  195 (320)
T PLN02789        128 LEFTRKIL--SLDAKNYHAWSHRQWVL-RTLGGWEDELEYCHQLLEEDVRN-----NSAWNQRYFVITRSPLLGG----L  195 (320)
T ss_pred             HHHHHHHH--HhCcccHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHCCCc-----hhHHHHHHHHHHhcccccc----c
Confidence            88888888  78888888888777664 44677888888888888864443     4678888877654321000    0


Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc----
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK----  366 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g----  366 (444)
                      ....+++++...+++ .++|+|..+|++++.++..    .++..+|+..+.+++..+|++ ..++..|+.++....    
T Consensus       196 ~~~~e~el~y~~~aI-~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~  273 (320)
T PLN02789        196 EAMRDSELKYTIDAI-LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEGLQPTA  273 (320)
T ss_pred             cccHHHHHHHHHHHH-HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHhhhccch
Confidence            012467888999999 9999999999999999988    456788999999999999998 499999999997632    


Q ss_pred             --------------CHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          367 --------------RYEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       367 --------------~~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                                    ..++|..+|+..-+.+|  --...|..
T Consensus       274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~--ir~~yw~~  312 (320)
T PLN02789        274 EFRDTVDTLAEELSDSTLAQAVCSELEVADP--MRRNYWAW  312 (320)
T ss_pred             hhhhhhhccccccccHHHHHHHHHHHHhhCc--HHHHHHHH
Confidence                          23567777777655566  44444443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=1.9e-16  Score=169.36  Aligned_cols=130  Identities=14%  Similarity=-0.001  Sum_probs=118.2

Q ss_pred             HHhhHHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          294 RATRQAKALQALVSAARSTNM---------------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      ..+++++|...+++.. ...|               +-.++...++.++.-.|++.+|++.+++.+...|.+ ...+..+
T Consensus       379 d~e~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n-~~l~~~~  456 (822)
T PRK14574        379 ESEQLDKAYQFAVNYS-EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN-QNLRIAL  456 (822)
T ss_pred             hcccHHHHHHHHHHHH-hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence            3578999999999999 7544               334567788999999999999999999999999999 4999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 013375          359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS  427 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~  427 (444)
                      |.++..+|++.+|+..++.++.++|  ++..+.+.+|.+.+.+|++++|....+.+++..|++..+...
T Consensus       457 A~v~~~Rg~p~~A~~~~k~a~~l~P--~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l  523 (822)
T PRK14574        457 ASIYLARDLPRKAEQELKAVESLAP--RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL  523 (822)
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence            9999999999999999999999999  899999999999999999999999999999999998876653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=1.4e-18  Score=159.60  Aligned_cols=215  Identities=16%  Similarity=0.096  Sum_probs=176.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK  239 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~  239 (444)
                      .++.+..|+.+|.+..+++.|+..|...+..-|.+.......|.++..+++.++|.+.|+.++  +++|.|++++...+.
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl--k~~~~nvEaiAcia~  332 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL--KLHPINVEAIACIAV  332 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH--hcCCccceeeeeeee
Confidence            567778889999999999999999999999999999999999999999999999999999999  899999987643333


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC---CC
Q 013375          240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---RD  316 (444)
Q Consensus       240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P---~~  316 (444)
                      -+ ...|+++-|+.+|++.|+.-..+     ...+.++|.|...-           +++|-++.+|++|+ ....   .-
T Consensus       333 ~y-fY~~~PE~AlryYRRiLqmG~~s-----peLf~NigLCC~ya-----------qQ~D~~L~sf~RAl-stat~~~~a  394 (478)
T KOG1129|consen  333 GY-FYDNNPEMALRYYRRILQMGAQS-----PELFCNIGLCCLYA-----------QQIDLVLPSFQRAL-STATQPGQA  394 (478)
T ss_pred             cc-ccCCChHHHHHHHHHHHHhcCCC-----hHHHhhHHHHHHhh-----------cchhhhHHHHHHHH-hhccCcchh
Confidence            22 33678888999999998843222     45678888876542           46788888888888 6543   23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK  396 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~  396 (444)
                      +++|||||.+....|++.-|..+|+-++.-||++ .+++++||.+-...|+.++|...+..|-...|  +-.+..++++.
T Consensus       395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s~~P--~m~E~~~Nl~~  471 (478)
T KOG1129|consen  395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKSVMP--DMAEVTTNLQF  471 (478)
T ss_pred             hhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc--cccccccceeE
Confidence            5788999988888899999999999999888988 58999999888888999999999988888888  77777777665


Q ss_pred             H
Q 013375          397 V  397 (444)
Q Consensus       397 ~  397 (444)
                      +
T Consensus       472 ~  472 (478)
T KOG1129|consen  472 M  472 (478)
T ss_pred             E
Confidence            4

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.79  E-value=2.9e-17  Score=144.80  Aligned_cols=207  Identities=18%  Similarity=0.053  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013375          162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC  241 (444)
Q Consensus       162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~  241 (444)
                      .++..||.-|...|++..|...+++||+.+|++..+|..+|.+|...|+.+.|.+.|++|+  .++|++-.++++-|..+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl--sl~p~~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL--SLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH--hcCCCccchhhhhhHHH
Confidence            3677899999999999999999999999999999999999999999999999999999999  99999999988777765


Q ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHH
Q 013375          242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY  321 (444)
Q Consensus       242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~  321 (444)
                      .. .|++++|..+|++++. .|.-..  .+..+-++|.|-.+.           |+++.|.+.|++++ +++|+++.+..
T Consensus       114 C~-qg~~~eA~q~F~~Al~-~P~Y~~--~s~t~eN~G~Cal~~-----------gq~~~A~~~l~raL-~~dp~~~~~~l  177 (250)
T COG3063         114 CA-QGRPEEAMQQFERALA-DPAYGE--PSDTLENLGLCALKA-----------GQFDQAEEYLKRAL-ELDPQFPPALL  177 (250)
T ss_pred             Hh-CCChHHHHHHHHHHHh-CCCCCC--cchhhhhhHHHHhhc-----------CCchhHHHHHHHHH-HhCcCCChHHH
Confidence            55 4689999999999988 443221  245667777776543           45677777777777 77777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      .++..+++.|++..|..++++...--+-. ++.+.+...+-...|+-+.|-.+=.+.-..+|  ...+
T Consensus       178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~-A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP--~s~e  242 (250)
T COG3063         178 ELARLHYKAGDYAPARLYLERYQQRGGAQ-AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP--YSEE  242 (250)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhccccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHH
Confidence            77777777777777777777776555544 35555555666666777777666666667777  5444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.79  E-value=2.3e-17  Score=151.35  Aligned_cols=195  Identities=15%  Similarity=0.054  Sum_probs=166.3

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE  210 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~  210 (444)
                      .+...|++++|+..+     +.++...|++..++..+|.++...|++++|++.|++++..+|.++.+++++|.++...|+
T Consensus        40 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~  114 (234)
T TIGR02521        40 GYLEQGDLEVAKENL-----DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK  114 (234)
T ss_pred             HHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence            455678999999876     445677899999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013375          211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT  290 (444)
Q Consensus       211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~  290 (444)
                      +++|+..|++++  ...+ .+.              .                       ...+..+|.++..       
T Consensus       115 ~~~A~~~~~~~~--~~~~-~~~--------------~-----------------------~~~~~~l~~~~~~-------  147 (234)
T TIGR02521       115 YEQAMQQFEQAI--EDPL-YPQ--------------P-----------------------ARSLENAGLCALK-------  147 (234)
T ss_pred             HHHHHHHHHHHH--hccc-ccc--------------c-----------------------hHHHHHHHHHHHH-------
Confidence            999999999999  5322 110              0                       1123445555543       


Q ss_pred             hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013375          291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED  370 (444)
Q Consensus       291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e  370 (444)
                          .|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++.+.|+++ ..+..++.++...|+.++
T Consensus       148 ----~g~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       148 ----AGDFDKAEKYLTRAL-QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA-ESLWLGIRIARALGDVAA  221 (234)
T ss_pred             ----cCCHHHHHHHHHHHH-HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHH
Confidence                356899999999999 99999999999999999999999999999999999988874 888889999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 013375          371 AETILNAALDQTG  383 (444)
Q Consensus       371 A~~~~~~al~~~P  383 (444)
                      |..+.+.+....|
T Consensus       222 a~~~~~~~~~~~~  234 (234)
T TIGR02521       222 AQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHHhhCc
Confidence            9999888876654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.78  E-value=9.6e-17  Score=164.52  Aligned_cols=307  Identities=15%  Similarity=0.097  Sum_probs=224.9

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013375           69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL  148 (444)
Q Consensus        69 l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~  148 (444)
                      .++..+..|++++|+..+..+++.    +|.+.... ..+|                    .+|..+|+.+.+....+. 
T Consensus       145 eAN~lfarg~~eeA~~i~~EvIkq----dp~~~~ay-~tL~--------------------~IyEqrGd~eK~l~~~ll-  198 (895)
T KOG2076|consen  145 EANNLFARGDLEEAEEILMEVIKQ----DPRNPIAY-YTLG--------------------EIYEQRGDIEKALNFWLL-  198 (895)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh----CccchhhH-HHHH--------------------HHHHHcccHHHHHHHHHH-
Confidence            346677789999999999999999    66554322 2233                    456778888888765432 


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013375          149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP  228 (444)
Q Consensus       149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P  228 (444)
                          +...+|.|.+.|..++.....+|.+.+|+-+|.+|++.+|.+.+..+..+.+|.++|+...|...|.+.+  .+.|
T Consensus       199 ----AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~--~~~p  272 (895)
T KOG2076|consen  199 ----AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL--QLDP  272 (895)
T ss_pred             ----HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH--hhCC
Confidence                3367899999999999999999999999999999999999999999999999999999999999999999  8998


Q ss_pred             CC----hHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375          229 KC----LPAL-LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ  303 (444)
Q Consensus       229 ~~----~~a~-~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~  303 (444)
                      ..    .... ...+...+. .+..+.|++.+..++......  ..... +..+...+..           ...++.|+.
T Consensus       273 ~~d~er~~d~i~~~~~~~~~-~~~~e~a~~~le~~~s~~~~~--~~~ed-~ni~ael~l~-----------~~q~d~~~~  337 (895)
T KOG2076|consen  273 PVDIERIEDLIRRVAHYFIT-HNERERAAKALEGALSKEKDE--ASLED-LNILAELFLK-----------NKQSDKALM  337 (895)
T ss_pred             chhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhcccc--ccccH-HHHHHHHHHH-----------hHHHHHhhH
Confidence            21    1111 112233333 344588888888888832221  11111 1122222211           123444444


Q ss_pred             HHHHHHHh-----------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375          304 ALVSAARS-----------------------------TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG  354 (444)
Q Consensus       304 ~~~~al~~-----------------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  354 (444)
                      ....-. .                             +.++=+-....+|.+..+.++..+++..+..--...|.+.+..
T Consensus       338 ~i~~~~-~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL  416 (895)
T KOG2076|consen  338 KIVDDR-NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDL  416 (895)
T ss_pred             HHHHHh-ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHH
Confidence            333322 2                             1122222256667777777888888887766555557765688


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       355 ~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      +..++..|+..|+|.+|+.++..++...+. ++..+|+.+|.++..+|.+++|++.|++++.+.|++.++
T Consensus       417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~  485 (895)
T KOG2076|consen  417 YLDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA  485 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence            999999999999999999999999988773 568899999999999999999999999999999998875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=2e-17  Score=152.03  Aligned_cols=242  Identities=14%  Similarity=0.112  Sum_probs=213.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK  239 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~  239 (444)
                      |.+--..+|.+|.+.|-+.+|...++.+++.. ..++.+..|+.+|.+..+.+.|+..|.+.+  ...|.++..+.-.++
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gl--d~fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGL--DSFPFDVTYLLGQAR  298 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhh--hcCCchhhhhhhhHH
Confidence            33344689999999999999999999999875 478999999999999999999999999999  899999988877888


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013375          240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI  319 (444)
Q Consensus       240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a  319 (444)
                      +. +..++.++|+++|+.+++..+.+     ..+...+|..|+.           .++.+-|+..|++++ +..-.+|+.
T Consensus       299 i~-eam~~~~~a~~lYk~vlk~~~~n-----vEaiAcia~~yfY-----------~~~PE~AlryYRRiL-qmG~~speL  360 (478)
T KOG1129|consen  299 IH-EAMEQQEDALQLYKLVLKLHPIN-----VEAIACIAVGYFY-----------DNNPEMALRYYRRIL-QMGAQSPEL  360 (478)
T ss_pred             HH-HHHHhHHHHHHHHHHHHhcCCcc-----ceeeeeeeecccc-----------CCChHHHHHHHHHHH-HhcCCChHH
Confidence            85 45789999999999999965444     2333445555543           256899999999999 999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      +.|+|.++.-.++++-++..|++|+..-  |+..++.|+++|.+....|++.-|..+|+-++..+|  ++.+++.++|.+
T Consensus       361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL  438 (478)
T KOG1129|consen  361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--QHGEALNNLAVL  438 (478)
T ss_pred             HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--chHHHHHhHHHH
Confidence            9999999999999999999999998754  565568999999999999999999999999999999  999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          398 QLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       398 ~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ..+.|++++|...|..+-+..|+-.++
T Consensus       439 ~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  439 AARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             HhhcCchHHHHHHHHHhhhhCcccccc
Confidence            999999999999999999999976653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.75  E-value=2.4e-16  Score=158.48  Aligned_cols=263  Identities=20%  Similarity=0.122  Sum_probs=203.3

Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcC--
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSG--  224 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~--  224 (444)
                      ...|.-..+..+++.+|..+|++++|+..+++++.+        .|.-......+|.+|..++++.+|+..|++|++.  
T Consensus       193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            344666667778999999999999999999999998        6666666777999999999999999999999941  


Q ss_pred             -CCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhh
Q 013375          225 -SEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGD---GCDQMESTANCLLGISLSAQSKVAITDFDRATR  297 (444)
Q Consensus       225 -~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  297 (444)
                       -.-++++   .++..++..+ ...|+++||..++++|+++...   .........+.+++.++..+           ++
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly-~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-----------~~  340 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLY-YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-----------NE  340 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-----------cc
Confidence             1114444   3455555554 5679999999999999997532   11122344556666666543           56


Q ss_pred             HHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--------CCChHHHHHHHHH
Q 013375          298 QAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--------GSNLKGWLLMARI  361 (444)
Q Consensus       298 ~~eA~~~~~~al~~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~~~la~~  361 (444)
                      +++|+..+++++ ++        +|.-+....+||.+|..+|++++|.++|++|+.+.-        .. ...+.++|..
T Consensus       341 ~Eea~~l~q~al-~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~-~~~l~~la~~  418 (508)
T KOG1840|consen  341 YEEAKKLLQKAL-KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV-GKPLNQLAEA  418 (508)
T ss_pred             hhHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh-hHHHHHHHHH
Confidence            788888888777 54        224467889999999999999999999999998762        22 2567789999


Q ss_pred             HHHccCHHHHHHHHHHHHhhc----CC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013375          362 LSAQKRYEDAETILNAALDQT----GK-WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF  431 (444)
Q Consensus       362 l~~~g~~~eA~~~~~~al~~~----P~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  431 (444)
                      +...+++.+|...|.+++.+.    |+ ++-...+.++|.+|..+|+++.|++.-.+++..+..+.++..-+.-.
T Consensus       419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~  493 (508)
T KOG1840|consen  419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVED  493 (508)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhH
Confidence            999999999999999888653    31 04466788999999999999999999999999999887765554443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=5.2e-16  Score=151.52  Aligned_cols=303  Identities=13%  Similarity=0.007  Sum_probs=217.4

Q ss_pred             HHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013375           70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL  149 (444)
Q Consensus        70 ~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~  149 (444)
                      |+..+..|+++.|+.+|..++.+    +|.|.- +..+                    ....|...++|++|+.--    
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l----~p~nhv-lySn--------------------rsaa~a~~~~~~~al~da----   59 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIML----SPTNHV-LYSN--------------------RSAAYASLGSYEKALKDA----   59 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHcc----CCCccc-hhcc--------------------hHHHHHHHhhHHHHHHHH----
Confidence            56778999999999999999999    665421 1011                    112455577888887652    


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC--------------------
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG--------------------  209 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g--------------------  209 (444)
                       ......+|.=+.+|..+|.++.-.|+|++|+..|.+.|+.+|+|......|+.++...-                    
T Consensus        60 -~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~  138 (539)
T KOG0548|consen   60 -TKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL  138 (539)
T ss_pred             -HHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence             34457889999999999999999999999999999999999999999999888772220                    


Q ss_pred             ----CchHHHHHHHHhhcCCCCCCC-----------------------------------------------------hH
Q 013375          210 ----EDLVALNLLRTLLSGSEDPKC-----------------------------------------------------LP  232 (444)
Q Consensus       210 ----~~~~A~~~~~~al~~~~~P~~-----------------------------------------------------~~  232 (444)
                          ..+.+.....+.+  ..+|.+                                                     .+
T Consensus       139 t~~~~~~~~~~~~l~~~--~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~e  216 (539)
T KOG0548|consen  139 TNYSLSDPAYVKILEII--QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTE  216 (539)
T ss_pred             hhhhhccHHHHHHHHHh--hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHH
Confidence                0011111111111  111111                                                     00


Q ss_pred             ---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc-------------
Q 013375          233 ---------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT-------------  290 (444)
Q Consensus       233 ---------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~-------------  290 (444)
                               ..-.+|...+. ...++.|+.+|.+++++. .+.     .-+.+.+.+|...+.....             
T Consensus       217 e~~~k~~a~~ek~lgnaayk-kk~f~~a~q~y~~a~el~-~~i-----t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre  289 (539)
T KOG0548|consen  217 ERRVKEKAHKEKELGNAAYK-KKDFETAIQHYAKALELA-TDI-----TYLNNIAAVYLERGKYAECIELCEKAVEVGRE  289 (539)
T ss_pred             HHHHHHhhhHHHHHHHHHHH-hhhHHHHHHHHHHHHhHh-hhh-----HHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence                     11234555554 568899999999999965 332     2234444444443332210             


Q ss_pred             ---h--------------HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH
Q 013375          291 ---D--------------FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK  353 (444)
Q Consensus       291 ---~--------------~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~  353 (444)
                         +              ..+.++++.|+..|.+++ .-.-+        ..++-..+..++++........++|+- +.
T Consensus       290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL-te~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~  359 (539)
T KOG0548|consen  290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL-TEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-AE  359 (539)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh-hhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-HH
Confidence               0              123467788888888887 54433        455666677788888888888888886 46


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       354 ~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      --..-|.-++..|+|.+|+..|.+||..+|  ++..+|.|+|.++.++|.+..|+..++.++++.|....
T Consensus       360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P--~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k  427 (539)
T KOG0548|consen  360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDP--EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK  427 (539)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence            666779999999999999999999999999  99999999999999999999999999999999776544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=4.2e-17  Score=154.20  Aligned_cols=267  Identities=14%  Similarity=0.078  Sum_probs=222.0

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG  209 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g  209 (444)
                      +.+..+..|.+|+..+     ..++...|++...|.+.+..+...|++++|....++.++++|+.+..+...+.++...+
T Consensus        57 n~~yk~k~Y~nal~~y-----t~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNY-----TFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             chHHHHhhHHHHHHHH-----HHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence            4566677888888775     45678899999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHh--------hc--CCCCCCCh--HH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375          210 EDLVALNLLRTL--------LS--GSEDPKCL--PA---LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN  274 (444)
Q Consensus       210 ~~~~A~~~~~~a--------l~--~~~~P~~~--~a---~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~  274 (444)
                      ...+|...|+..        +.  ..+-|.+.  .+   +..+..-|+...++.++|....-.+++..+.     +..+.
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-----n~~al  206 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-----NAEAL  206 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-----hhHHH
Confidence            888887555421        10  01222222  11   2234455778889999999999999985433     36788


Q ss_pred             HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHH
Q 013375          275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------------ILYRLSLEYAEQRKLNAAHYYAKM  342 (444)
Q Consensus       275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------------a~~~lg~~~~~~g~~~~A~~~~~~  342 (444)
                      +..|.|+...           .+.+.|+..|++++ .++|++.+            .|-.-|.-.++.|++.+|.+.|..
T Consensus       207 ~vrg~~~yy~-----------~~~~ka~~hf~qal-~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte  274 (486)
T KOG0550|consen  207 YVRGLCLYYN-----------DNADKAINHFQQAL-RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE  274 (486)
T ss_pred             Hhcccccccc-----------cchHHHHHHHhhhh-ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence            8999988764           46899999999999 99999865            345668888999999999999999


Q ss_pred             HHhhcCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          343 LLKLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       343 al~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      +|.++|++.   +.+|.+++.+...+||..+|+..++.|+.++|  ....++..+|.++..++++++|++.|++++....
T Consensus       275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~--syikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS--SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999962   35788999999999999999999999999999  8999999999999999999999999999998766


Q ss_pred             h
Q 013375          420 V  420 (444)
Q Consensus       420 ~  420 (444)
                      +
T Consensus       353 s  353 (486)
T KOG0550|consen  353 D  353 (486)
T ss_pred             c
Confidence            5

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.75  E-value=6.4e-16  Score=155.40  Aligned_cols=253  Identities=18%  Similarity=0.135  Sum_probs=184.3

Q ss_pred             HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375           12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL   91 (444)
Q Consensus        12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~   91 (444)
                      ...+.|..|...|+|++|++.|+.++++..+......           +.+...+..+|.+|...+++++|+..|++||+
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h-----------l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH-----------LVVASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC-----------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3445889999999999999999999998766432111           22556677799999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375           92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF  171 (444)
Q Consensus        92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l  171 (444)
                      +.     +      .-++                                             ..+|.-..++.+|+.+|
T Consensus       270 i~-----e------~~~G---------------------------------------------~~h~~va~~l~nLa~ly  293 (508)
T KOG1840|consen  270 IR-----E------EVFG---------------------------------------------EDHPAVAATLNNLAVLY  293 (508)
T ss_pred             HH-----H------HhcC---------------------------------------------CCCHHHHHHHHHHHHHH
Confidence            71     0      0000                                             12233345678899999


Q ss_pred             HhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013375          172 SIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE  243 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~  243 (444)
                      ...|++++|..++++|+.+-        |.-...+.+++.++..++++++|+..|++++                     
T Consensus       294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al---------------------  352 (508)
T KOG1840|consen  294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL---------------------  352 (508)
T ss_pred             hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH---------------------
Confidence            99999999999888877552        1222334444555555555555555555544                     


Q ss_pred             CCCCHHHHHHHHHHHHHHcC---CCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh--------
Q 013375          244 YPDLAEEGATFASRALECLG---DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------  312 (444)
Q Consensus       244 ~~~~~~eA~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~--------  312 (444)
                                      ++..   +.+....+..+.+||.+|..+           |++.+|.+.|++|+ ++        
T Consensus       353 ----------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~-----------gk~~ea~~~~k~ai-~~~~~~~~~~  404 (508)
T KOG1840|consen  353 ----------------KIYLDAPGEDNVNLAKIYANLAELYLKM-----------GKYKEAEELYKKAI-QILRELLGKK  404 (508)
T ss_pred             ----------------HHHHhhccccchHHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHH-HHHHhcccCc
Confidence                            4322   111223456788899998775           57899999999999 65        


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE----GGSN--LKGWLLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      ++.....+.++|..+.+.+++.+|...|.++..+.    |+++  ...+.+|+.+|..+|+|++|+++-++++.
T Consensus       405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            34556788999999999999999999999998764    4442  35788999999999999999999999984

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=6.8e-16  Score=136.19  Aligned_cols=195  Identities=15%  Similarity=0.016  Sum_probs=164.0

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE  210 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~  210 (444)
                      -|..+|++..|...+     +.+++.+|++..+|..++.+|...|+.+.|.+.|++|++++|++.++++|.|..++.+|+
T Consensus        44 ~YL~~gd~~~A~~nl-----ekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          44 GYLQQGDYAQAKKNL-----EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence            466788899998875     567899999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013375          211 DLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV  287 (444)
Q Consensus       211 ~~~A~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~  287 (444)
                      +++|...|++|+   .+|...   ..+. +.++|..+.|+++.|..+|+++|+..|..+....     .+.....     
T Consensus       119 ~~eA~q~F~~Al---~~P~Y~~~s~t~e-N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l-----~~a~~~~-----  184 (250)
T COG3063         119 PEEAMQQFERAL---ADPAYGEPSDTLE-NLGLCALKAGQFDQAEEYLKRALELDPQFPPALL-----ELARLHY-----  184 (250)
T ss_pred             hHHHHHHHHHHH---hCCCCCCcchhhh-hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH-----HHHHHHH-----
Confidence            999999999999   678743   3444 4556777789999999999999997766543322     2222222     


Q ss_pred             hhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                            ..|++..|...+++.. ..-+-+++.+.....+-.+.|+-+.|-++=.+..++.|...
T Consensus       185 ------~~~~y~~Ar~~~~~~~-~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         185 ------KAGDYAPARLYLERYQ-QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             ------hcccchHHHHHHHHHH-hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence                  2467899999999999 88888888887777778889999999999999999999863

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.72  E-value=6.6e-16  Score=143.67  Aligned_cols=196  Identities=15%  Similarity=0.021  Sum_probs=137.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-
Q 013375          157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-  232 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~-  232 (444)
                      .+..++.++.+|..+...|++++|+..|++++..+|+++   .+|+.+|.++...|++++|+..|++++  +.+|+++. 
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~  106 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI--RLHPNHPDA  106 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCch
Confidence            356778899999999999999999999999999999876   688999999999999999999999999  89998876 


Q ss_pred             --HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013375          233 --ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR  310 (444)
Q Consensus       233 --a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~  310 (444)
                        +++..|.+++...                                +.++.           ..+++++|++.|++++ 
T Consensus       107 ~~a~~~~g~~~~~~~--------------------------------~~~~~-----------~~~~~~~A~~~~~~~~-  142 (235)
T TIGR03302       107 DYAYYLRGLSNYNQI--------------------------------DRVDR-----------DQTAAREAFEAFQELI-  142 (235)
T ss_pred             HHHHHHHHHHHHHhc--------------------------------ccccC-----------CHHHHHHHHHHHHHHH-
Confidence              3444444332210                                00110           1245778888888888 


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-CCcHH
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK-WEQGE  389 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~-~~~~~  389 (444)
                      ..+|++..++..+..+...    ..             .. ......+|.++..+|++++|+..++++++..|+ +....
T Consensus       143 ~~~p~~~~~~~a~~~~~~~----~~-------------~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (235)
T TIGR03302       143 RRYPNSEYAPDAKKRMDYL----RN-------------RL-AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE  204 (235)
T ss_pred             HHCCCChhHHHHHHHHHHH----HH-------------HH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH
Confidence            8888887655332221110    00             01 133345677777777777777777777777662 02356


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          390 LLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       390 ~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      +++.+|.++..+|++++|...++.+..
T Consensus       205 a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       205 ALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            777777777777777777777666544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.72  E-value=3.3e-14  Score=140.49  Aligned_cols=324  Identities=13%  Similarity=0.015  Sum_probs=226.2

Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHhCc-CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHH
Q 013375           62 LNRAVELLPELWKLADAPRETIMSYRRALLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEE  140 (444)
Q Consensus        62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~-~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~e  140 (444)
                      +.-++..++.++...|++++|...|.++.+. +.+.++...   ....+.                    .+...|++++
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~a~--------------------~~~~~g~~~~   61 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER---AHVEAL--------------------SAWIAGDLPK   61 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH---HHHHHH--------------------HHHHcCCHHH
Confidence            3457777888899999999999999999987 223332111   111111                    2234678899


Q ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375          141 AILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       141 Ai~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~  216 (444)
                      |+..+     +.++..+|++..++.. +..+..    .|....+...++.....+|....++..+|.++..+|++++|+.
T Consensus        62 A~~~~-----~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  135 (355)
T cd05804          62 ALALL-----EQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEE  135 (355)
T ss_pred             HHHHH-----HHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            98875     5567888999988775 555544    4555666666666667888888899999999999999999999


Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375          217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT  296 (444)
Q Consensus       217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~  296 (444)
                      .+++++  .++|+++.++..++.+++. .|++++|+.++++++...+.+ .......+..++.++...           |
T Consensus       136 ~~~~al--~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~~~~~-----------G  200 (355)
T cd05804         136 AARRAL--ELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALFYLER-----------G  200 (355)
T ss_pred             HHHHHH--hhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHHHHHC-----------C
Confidence            999999  8999999998888888765 799999999999999965532 222334567788887664           6


Q ss_pred             hHHHHHHHHHHHHHhhCCC--CHHHHHHH---HHHHHHcCCHHHHHHH---HHHHHhhcCCCC-hHHHHHHHHHHHHccC
Q 013375          297 RQAKALQALVSAARSTNMR--DLSILYRL---SLEYAEQRKLNAAHYY---AKMLLKLEGGSN-LKGWLLMARILSAQKR  367 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~--~~~a~~~l---g~~~~~~g~~~~A~~~---~~~al~l~P~~~-~~~~~~la~~l~~~g~  367 (444)
                      ++++|+..|++++ ...|.  .....+..   -..+...|....+...   ........|... .......+.++...|+
T Consensus       201 ~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  279 (355)
T cd05804         201 DYEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD  279 (355)
T ss_pred             CHHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence            7999999999999 88873  22222122   2222334433333222   111111112210 1333467888889999


Q ss_pred             HHHHHHHHHHHHhhcC-------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013375          368 YEDAETILNAALDQTG-------KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF  431 (444)
Q Consensus       368 ~~eA~~~~~~al~~~P-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  431 (444)
                      .++|...++......-       .+....+....|.++..+|++++|+..+..++.+.. ..++|..+.++
T Consensus       280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~-~~ggs~aq~~~  349 (355)
T cd05804         280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA-RIGGSHAQRDV  349 (355)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCcHHHHHH
Confidence            9999999988765332       002356678889999999999999999999999984 55565555444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.71  E-value=4.2e-15  Score=141.87  Aligned_cols=300  Identities=14%  Similarity=0.066  Sum_probs=235.1

Q ss_pred             HHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHH-HHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH
Q 013375           72 LWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFA-IFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR  150 (444)
Q Consensus        72 ~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~  150 (444)
                      .+++.|+++.|++.++-.=+.    |.........++. ..++.++.                   ++..|...     .
T Consensus       428 ~~lk~~d~~~aieilkv~~~k----dnk~~saaa~nl~~l~flqggk-------------------~~~~aqqy-----a  479 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKK----DNKTASAAANNLCALRFLQGGK-------------------DFADAQQY-----A  479 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhc----cchhhHHHhhhhHHHHHHhccc-------------------chhHHHHH-----H
Confidence            478899999999988765554    3332222223332 22222221                   34444433     3


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                      +.++..+-.++.+..+.|++-...|++++|.+.|+.+|.-+..-.++.|++|..+..+|+.++|+.+|-+.-  .+--++
T Consensus       480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh--~il~nn  557 (840)
T KOG2003|consen  480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH--AILLNN  557 (840)
T ss_pred             HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH--HHHHhh
Confidence            555667777889999999999999999999999999999999999999999999999999999999999877  666788


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013375          231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR  310 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~  310 (444)
                      .++++..+.++ ..+.+..+|++++-++....|.++     ..+.-||..|.+.           |+..+|.+++-..- 
T Consensus       558 ~evl~qianiy-e~led~aqaie~~~q~~slip~dp-----~ilskl~dlydqe-----------gdksqafq~~ydsy-  619 (840)
T KOG2003|consen  558 AEVLVQIANIY-ELLEDPAQAIELLMQANSLIPNDP-----AILSKLADLYDQE-----------GDKSQAFQCHYDSY-  619 (840)
T ss_pred             HHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCCCH-----HHHHHHHHHhhcc-----------cchhhhhhhhhhcc-
Confidence            88888888885 557788999999999999776653     4567788888665           55678999999999 


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL  390 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  390 (444)
                      +.-|-|.+..-.||.-|....=.++|+.+|++|--+.|+. ..-.+..+.++.+.|+|+.|...|+..-..+|  .+.+.
T Consensus       620 ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--edldc  696 (840)
T KOG2003|consen  620 RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--EDLDC  696 (840)
T ss_pred             cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--cchHH
Confidence            9999999999999999999999999999999999999996 35556779999999999999999999999999  88888


Q ss_pred             HHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHhhh
Q 013375          391 LRTKAKVQLVQGQL-----KGAVETYTHLLAALQVQT  422 (444)
Q Consensus       391 ~~~la~~~~~~g~~-----~~A~~~~~~al~l~~~~~  422 (444)
                      +..+-.+.-.+|-.     ..-++-.++.-+|...+.
T Consensus       697 lkflvri~~dlgl~d~key~~klek~eki~eir~qre  733 (840)
T KOG2003|consen  697 LKFLVRIAGDLGLKDAKEYADKLEKAEKIKEIREQRE  733 (840)
T ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777776555532     233344444555555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.71  E-value=5.6e-13  Score=146.53  Aligned_cols=257  Identities=11%  Similarity=-0.016  Sum_probs=191.0

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHH
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP----GIINRKERYHILALCY  205 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~l  205 (444)
                      ..|...|++++|+.++..-    .-....-|...|..+-.++.+.|++++|.+.|+++..    +.|+ ...|..+...|
T Consensus       515 ~gy~k~G~~eeAl~lf~~M----~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay  589 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIM----RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC  589 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence            4566778888998876321    1111223567888889999999999999999988864    3443 56788888889


Q ss_pred             HHCCCchHHHHHHHHhhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhhhhhh
Q 013375          206 YGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSA  283 (444)
Q Consensus       206 ~~~g~~~~A~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~  283 (444)
                      .+.|++++|+..|++..  +.+ +.++..+..+...+ .+.|++++|+..|++..+.- .|+     ...|..+..++..
T Consensus       590 ~k~G~ldeA~elf~~M~--e~gi~p~~~tynsLI~ay-~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~k  661 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIH--EYNIKGTPEVYTIAVNSC-SQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAGH  661 (1060)
T ss_pred             HHCCCHHHHHHHHHHHH--HcCCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHh
Confidence            99999999999999988  443 23444555444443 45788999999999888741 222     2345555555543


Q ss_pred             hhhhhhchHHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCChHHHHHHHH
Q 013375          284 QSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMAR  360 (444)
Q Consensus       284 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~~la~  360 (444)
                                 .|+.++|.+.+++.. +.. +.|..++..+...|.+.|++++|++.|++..+  +.|+  ...|..+..
T Consensus       662 -----------~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~  727 (1060)
T PLN03218        662 -----------AGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALIT  727 (1060)
T ss_pred             -----------CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence                       367889999999988 654 56778889999999999999999999998765  4565  478999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          361 ILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       361 ~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      .+.+.|++++|+..+++....  .|   +...|..+-..+.+.|++++|...++++++
T Consensus       728 gy~k~G~~eeAlelf~eM~~~Gi~P---d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        728 ALCEGNQLPKALEVLSEMKRLGLCP---NTITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999987653  46   556677777888899999999988888765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.70  E-value=5.2e-14  Score=151.37  Aligned_cols=340  Identities=10%  Similarity=-0.028  Sum_probs=244.5

Q ss_pred             HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCC-----------ccccHHHHH------------HHHHHH
Q 013375           12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLG-----------ADCKLQETL------------NRAVEL   68 (444)
Q Consensus        12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~l~~~~------------~~a~~~   68 (444)
                      .|.....+|.+.|++++|.+.|++.++...      .|+...           .....+..+            ..++..
T Consensus       191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~  264 (697)
T PLN03081        191 SWGTIIGGLVDAGNYREAFALFREMWEDGS------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA  264 (697)
T ss_pred             eHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence            355666677788888888888887764311      111100           000000000            012233


Q ss_pred             HHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013375           69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL  148 (444)
Q Consensus        69 l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~  148 (444)
                      +...|.+.|++++|...|++....    +...   + +.                    +...|...|++++|+.++..-
T Consensus       265 Li~~y~k~g~~~~A~~vf~~m~~~----~~vt---~-n~--------------------li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        265 LIDMYSKCGDIEDARCVFDGMPEK----TTVA---W-NS--------------------MLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCCCC----ChhH---H-HH--------------------HHHHHHhCCCHHHHHHHHHHH
Confidence            446778888888888888876443    2211   1 11                    113456678999999886321


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC
Q 013375          149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGSED  227 (444)
Q Consensus       149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~  227 (444)
                          .-....-|...|..+..++.+.|++++|.+.++.+++.. +.+..++..|...|.+.|++++|...|++..  .  
T Consensus       317 ----~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~--  388 (697)
T PLN03081        317 ----RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--R--  388 (697)
T ss_pred             ----HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--C--
Confidence                111123366688999999999999999999999998876 5677889999999999999999999999877  4  


Q ss_pred             CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375          228 PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV  306 (444)
Q Consensus       228 P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~  306 (444)
                      | +...|..+... +.+.|+.++|+..|++..+.- .|+     ...+..+-.++..           .|..++|.+.|+
T Consensus       389 ~-d~~t~n~lI~~-y~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~-----------~g~~~~a~~~f~  450 (697)
T PLN03081        389 K-NLISWNALIAG-YGNHGRGTKAVEMFERMIAEGVAPN-----HVTFLAVLSACRY-----------SGLSEQGWEIFQ  450 (697)
T ss_pred             C-CeeeHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhc-----------CCcHHHHHHHHH
Confidence            4 34455555444 345789999999999988742 222     2334444444433           367899999999


Q ss_pred             HHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013375          307 SAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       307 ~al~~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~  384 (444)
                      ... +..+  .+...+..+...|.+.|++++|.+.+++. ...|+  ...|..+...+...|+++.|..++++.++..| 
T Consensus       451 ~m~-~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-  525 (697)
T PLN03081        451 SMS-ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT--VNMWAALLTACRIHKNLELGRLAAEKLYGMGP-  525 (697)
T ss_pred             HHH-HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-
Confidence            998 6433  33457888999999999999999999875 45666  37899999999999999999999999999999 


Q ss_pred             CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                       ++...|..+..++...|++++|.+.++...+.
T Consensus       526 -~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        526 -EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             -CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence             88888999999999999999999999887643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=5e-16  Score=132.95  Aligned_cols=127  Identities=9%  Similarity=0.005  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013375          252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR  331 (444)
Q Consensus       252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g  331 (444)
                      ...++++++.. |+       .++.+|.++...           |++++|+..|++++ .++|+++.+|+++|.++...|
T Consensus        13 ~~~~~~al~~~-p~-------~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g   72 (144)
T PRK15359         13 EDILKQLLSVD-PE-------TVYASGYASWQE-----------GDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLK   72 (144)
T ss_pred             HHHHHHHHHcC-HH-------HHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHh
Confidence            46778888843 22       245567776554           67899999999999 999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013375          332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~  401 (444)
                      ++++|+..|+++++++|+++ .+|+++|.++..+|++++|+..|+++++..|  +++..+.++|.+...+
T Consensus        73 ~~~~A~~~y~~Al~l~p~~~-~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p--~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         73 EYTTAINFYGHALMLDASHP-EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY--ADASWSEIRQNAQIMV  139 (144)
T ss_pred             hHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHH
Confidence            99999999999999999995 9999999999999999999999999999999  8999999998887654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.69  E-value=2.8e-14  Score=153.45  Aligned_cols=319  Identities=9%  Similarity=-0.021  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHH--------HHHHH----hhhcCCCCCCcc-c-cccCc
Q 013375           65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKE--------FAIFL----LYCGGETCPPNL-R-SQMGS  130 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~--------~a~~l----l~~~~~~~~~~~-~-~~~~~  130 (444)
                      .+..+...|.+.|++++|+..|+++++....+++.....+...        .+..+    ...+.   .++. . ..+..
T Consensus       191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~---~~d~~~~n~Li~  267 (697)
T PLN03081        191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV---VGDTFVSCALID  267 (697)
T ss_pred             eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC---CccceeHHHHHH
Confidence            4455566788999999999999999876333332221111000        01111    11111   1111 1 23456


Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAG  209 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~g  209 (444)
                      .|.+.|++++|..++     +   ...+.+...|+.+...|.+.|++++|+..|++..... ..+..++..+..++...|
T Consensus       268 ~y~k~g~~~~A~~vf-----~---~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g  339 (697)
T PLN03081        268 MYSKCGDIEDARCVF-----D---GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA  339 (697)
T ss_pred             HHHHCCCHHHHHHHH-----H---hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            788889999998875     2   2335688899999999999999999999999886532 235668888999999999


Q ss_pred             CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh
Q 013375          210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI  289 (444)
Q Consensus       210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~  289 (444)
                      ++++|.+.+...++....| +..++..+...+ .+.|+.++|...|++..+   ++     ...|..+..+|.+.     
T Consensus       340 ~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y-~k~G~~~~A~~vf~~m~~---~d-----~~t~n~lI~~y~~~-----  404 (697)
T PLN03081        340 LLEHAKQAHAGLIRTGFPL-DIVANTALVDLY-SKWGRMEDARNVFDRMPR---KN-----LISWNALIAGYGNH-----  404 (697)
T ss_pred             chHHHHHHHHHHHHhCCCC-CeeehHHHHHHH-HHCCCHHHHHHHHHhCCC---CC-----eeeHHHHHHHHHHc-----
Confidence            9999999999998422333 444555455544 457899999999987654   22     34677777777654     


Q ss_pred             chHHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcCCCChHHHHHHHHHHHHc
Q 013375          290 TDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK---LEGGSNLKGWLLMARILSAQ  365 (444)
Q Consensus       290 ~~~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~~la~~l~~~  365 (444)
                            |+.++|++.|++.. +.. ..|...+..+-.++...|++++|.+.|+...+   +.|+  ...|..+..++.+.
T Consensus       405 ------G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~  475 (697)
T PLN03081        405 ------GRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGRE  475 (697)
T ss_pred             ------CCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhc
Confidence                  67899999999988 542 33466778888889999999999999999975   4565  37888899999999


Q ss_pred             cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      |++++|.+.+++. ...|   +...|..+...+...|+++.|...+++++++.|++.
T Consensus       476 G~~~eA~~~~~~~-~~~p---~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~  528 (697)
T PLN03081        476 GLLDEAYAMIRRA-PFKP---TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL  528 (697)
T ss_pred             CCHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence            9999999998765 3445   567799999999999999999999999998888643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.69  E-value=2e-15  Score=140.42  Aligned_cols=162  Identities=15%  Similarity=0.012  Sum_probs=121.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013375          189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ  268 (444)
Q Consensus       189 ~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~  268 (444)
                      +.++..++.++.+|..+...|++++|+..|++++  ..+|+++..                                   
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~-----------------------------------   69 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALE--SRYPFSPYA-----------------------------------   69 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCchhH-----------------------------------
Confidence            4557788899999999999999999999999999  788876521                                   


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHH
Q 013375          269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS---ILYRLSLEYAEQ--------RKLNAAH  337 (444)
Q Consensus       269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~---a~~~lg~~~~~~--------g~~~~A~  337 (444)
                        ..+++.+|.++...           +++++|+..|++++ +.+|+++.   +++.+|.++...        |++++|+
T Consensus        70 --~~a~~~la~~~~~~-----------~~~~~A~~~~~~~l-~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~  135 (235)
T TIGR03302        70 --EQAQLDLAYAYYKS-----------GDYAEAIAAADRFI-RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAF  135 (235)
T ss_pred             --HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence              12344455555433           45778888888888 88887776   678888888766        8899999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       338 ~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      +.|++++..+|++. .++..+..+..    .             .+  ......+.+|.++...|++++|+..|+++++.
T Consensus       136 ~~~~~~~~~~p~~~-~~~~a~~~~~~----~-------------~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  195 (235)
T TIGR03302       136 EAFQELIRRYPNSE-YAPDAKKRMDY----L-------------RN--RLAGKELYVARFYLKRGAYVAAINRFETVVEN  195 (235)
T ss_pred             HHHHHHHHHCCCCh-hHHHHHHHHHH----H-------------HH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999984 66543332211    1             11  11233457889999999999999999999999


Q ss_pred             HHhh
Q 013375          418 LQVQ  421 (444)
Q Consensus       418 ~~~~  421 (444)
                      .|+.
T Consensus       196 ~p~~  199 (235)
T TIGR03302       196 YPDT  199 (235)
T ss_pred             CCCC
Confidence            8865

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=3.6e-16  Score=133.85  Aligned_cols=116  Identities=14%  Similarity=0.056  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375          302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       302 ~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~  381 (444)
                      ...|++++ +++|++   ++++|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+..|++++.+
T Consensus        13 ~~~~~~al-~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLL-SVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHH-HcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            46899999 999986   6789999999999999999999999999999 599999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       382 ~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      +|  +++.+++++|.++..+|++++|+..|++++++.|++.+.
T Consensus        88 ~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~  128 (144)
T PRK15359         88 DA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW  128 (144)
T ss_pred             CC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            99  999999999999999999999999999999999987653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.69  E-value=2.6e-15  Score=148.37  Aligned_cols=210  Identities=18%  Similarity=0.098  Sum_probs=160.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013375          157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA  233 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a  233 (444)
                      +|+++.+|..+|..+...|+++.+...+.++.+..|.+   .+..+..|.++...|++++|...+++++  ..+|++..+
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~P~~~~a   79 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL--DDYPRDLLA   79 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHH
Confidence            69999999999999999999999999999888777654   5677888999999999999999999999  899999876


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375          234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN  313 (444)
Q Consensus       234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  313 (444)
                      +.. +..+ ...+...++...+.++++...+.. +....++..+|.++..+           |++++|+..+++++ +++
T Consensus        80 ~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~-----------G~~~~A~~~~~~al-~~~  144 (355)
T cd05804          80 LKL-HLGA-FGLGDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLEEA-----------GQYDRAEEAARRAL-ELN  144 (355)
T ss_pred             HHH-hHHH-HHhcccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhC
Confidence            542 1111 112222233333344443222221 11234555667776554           67899999999999 999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      |+++.++..+|.++.+.|++++|+..+++++...|.++   ...|..+|.++..+|++++|+..+++++...|
T Consensus       145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999887532   13466789999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.9e-14  Score=132.46  Aligned_cols=266  Identities=14%  Similarity=0.058  Sum_probs=187.5

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH-----HHHHHHHHHH
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCY  205 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~l  205 (444)
                      =|.-.++.++|+.++.     .++..+|...++...||..+...|..+.||..=+-.+. .|+.+     .+.+.||.-|
T Consensus        44 NfLLs~Q~dKAvdlF~-----e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          44 NFLLSNQPDKAVDLFL-----EMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHHhhcCcchHHHHHH-----HHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence            3445667788888763     24566788888888888888888888888886554443 46543     4677788888


Q ss_pred             HHCCCchHHHHHHHHhhcCCCCCCCh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          206 YGAGEDLVALNLLRTLLSGSEDPKCL-PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       206 ~~~g~~~~A~~~~~~al~~~~~P~~~-~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                      +..|=++.|+..|...+   -.|+.. .+.-.+..++ +...+++.||+..++.....+.....-.+..+.-|+..+.  
T Consensus       118 m~aGl~DRAE~~f~~L~---de~efa~~AlqqLl~IY-Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~--  191 (389)
T COG2956         118 MAAGLLDRAEDIFNQLV---DEGEFAEGALQQLLNIY-QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL--  191 (389)
T ss_pred             HHhhhhhHHHHHHHHHh---cchhhhHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh--
Confidence            88888888888888877   235543 4554455554 5567788888888888875433221111222222222221  


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA  364 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~  364 (444)
                               ...+.+.|+..+++|+ +-||++..+-..+|.+....|+++.|++.++++++-||+.-.++...|..+|..
T Consensus       192 ---------~~~~~d~A~~~l~kAl-qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~  261 (389)
T COG2956         192 ---------ASSDVDRARELLKKAL-QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ  261 (389)
T ss_pred             ---------hhhhHHHHHHHHHHHH-hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence                     2357788888888888 888888888888888888888888888888888888888744677788888888


Q ss_pred             ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      +|+.++.+..+.++.+.++   ...+-..++.+.....-.++|.....+.+.-.|.-
T Consensus       262 lg~~~~~~~fL~~~~~~~~---g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~  315 (389)
T COG2956         262 LGKPAEGLNFLRRAMETNT---GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM  315 (389)
T ss_pred             hCCHHHHHHHHHHHHHccC---CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence            8888888888888888877   34555566666666777777777777777666643

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.68  E-value=1.5e-14  Score=149.37  Aligned_cols=338  Identities=14%  Similarity=0.096  Sum_probs=242.7

Q ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHH-------------HHHHHHHHhhhcCCCCCCc----
Q 013375           61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKL-------------QKEFAIFLLYCGGETCPPN----  123 (444)
Q Consensus        61 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l-------------~~~~a~~ll~~~~~~~~~~----  123 (444)
                      .+..++-.+|.+|...-+...|...|++|.++    |+......             ...+.. .++.+ +.++..    
T Consensus       490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~a~~I-~l~~~-qka~a~~~k~  563 (1238)
T KOG1127|consen  490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEEAFEI-CLRAA-QKAPAFACKE  563 (1238)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHHHHHH-HHHHh-hhchHHHHHh
Confidence            35679999999999999999999999999999    65432111             111122 11111 111111    


Q ss_pred             cccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 013375          124 LRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL  203 (444)
Q Consensus       124 ~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  203 (444)
                      .....+..|...+++-.|+..+     +.++..+|.|...|.-+|.+|.+.|++..|+..|.+|..++|.+.-..|..+.
T Consensus       564 nW~~rG~yyLea~n~h~aV~~f-----QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~  638 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEF-----QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV  638 (1238)
T ss_pred             hhhhccccccCccchhhHHHHH-----HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence            1123455666778888888775     66778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCchHHHHHHHHhhcCCCCCCCh-------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-------------
Q 013375          204 CYYGAGEDLVALNLLRTLLSGSEDPKCL-------PALLIASKICGEYPDLAEEGATFASRALECLG-------------  263 (444)
Q Consensus       204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~-------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~-------------  263 (444)
                      +...+|+|.+|+..+...+  ....+..       +.++..+..++. .|-...|..++++.++.+-             
T Consensus       639 ~ecd~GkYkeald~l~~ii--~~~s~e~~~q~gLaE~~ir~akd~~~-~gf~~kavd~~eksie~f~~~l~h~~~~~~~~  715 (1238)
T KOG1127|consen  639 MECDNGKYKEALDALGLII--YAFSLERTGQNGLAESVIRDAKDSAI-TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ  715 (1238)
T ss_pred             HHHHhhhHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            9999999999999988887  3333222       222222222211 1223334444443332210             


Q ss_pred             ---------------CCcch-------------------------------------hhhHHHHHhhhhhhhhhhhhhch
Q 013375          264 ---------------DGCDQ-------------------------------------MESTANCLLGISLSAQSKVAITD  291 (444)
Q Consensus       264 ---------------~~~~~-------------------------------------~~~~a~~~lg~~~~~~~~~~~~~  291 (444)
                                     |+..+                                     ..+..|+++|+.|........  
T Consensus       716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~--  793 (1238)
T KOG1127|consen  716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG--  793 (1238)
T ss_pred             HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC--
Confidence                           00000                                     001224444444333111000  


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375          292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                       +.+.+-..|+.++++++ +++.++...|+.||.+ ...|++.-|..+|-+++.++|.+ ...|.++|.+.....+++-|
T Consensus       794 -et~~~~~~Ai~c~KkaV-~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~-~~~W~NlgvL~l~n~d~E~A  869 (1238)
T KOG1127|consen  794 -ETMKDACTAIRCCKKAV-SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC-HCQWLNLGVLVLENQDFEHA  869 (1238)
T ss_pred             -CcchhHHHHHHHHHHHH-HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc-hhheeccceeEEecccHHHh
Confidence             01123358999999999 9999999999999988 55689999999999999999999 59999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      ...+.++..++|  +|...|...+.+....|+.-+++..+.+--+++.+
T Consensus       870 ~~af~~~qSLdP--~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~  916 (1238)
T KOG1127|consen  870 EPAFSSVQSLDP--LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK  916 (1238)
T ss_pred             hHHHHhhhhcCc--hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence            999999999999  99999999999999999999999999986666553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.67  E-value=1.3e-15  Score=137.46  Aligned_cols=124  Identities=17%  Similarity=0.167  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH-HHccC--HHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL-SAQKR--YEDAE  372 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l-~~~g~--~~eA~  372 (444)
                      ++.++++..+++++ +.+|+|+++|+.||.++...|++++|+..|+++++++|++ ...+..+|.++ ...|+  +++|.
T Consensus        53 ~~~~~~i~~l~~~L-~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         53 QTPEAQLQALQDKI-RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-AELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             hhHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCcHHHH
Confidence            45689999999999 9999999999999999999999999999999999999999 49999999975 67787  59999


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ..++++++.+|  ++..+++++|..+..+|++++|+..|++++++.|.+.+
T Consensus       131 ~~l~~al~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        131 EMIDKALALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999  89999999999999999999999999999999987654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.67  E-value=1e-12  Score=144.42  Aligned_cols=261  Identities=11%  Similarity=0.003  Sum_probs=203.1

Q ss_pred             CccccCCCcHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHH
Q 013375          129 GSSFVPRNNIEEAILLLMILLRKVALKRI-EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYY  206 (444)
Q Consensus       129 ~~~~~~~~~~~eAi~~l~~~~~~~~l~~~-p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~  206 (444)
                      ...|...|++++|..++.     ...... ..|...|..+-..|.+.|++++|+..|++..... ..+...|..+...|.
T Consensus       479 I~~y~k~G~vd~A~~vf~-----eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~  553 (1060)
T PLN03218        479 ISTCAKSGKVDAMFEVFH-----EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG  553 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHH-----HHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345677889999988762     222222 2377889999999999999999999999886543 234778999999999


Q ss_pred             HCCCchHHHHHHHHhhc--CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          207 GAGEDLVALNLLRTLLS--GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       207 ~~g~~~~A~~~~~~al~--~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                      +.|++++|...|++..+  ..+.|+. ..+..+...| .+.|++++|...|++..+...+.    ....|..+..+|.+ 
T Consensus       554 k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay-~k~G~ldeA~elf~~M~e~gi~p----~~~tynsLI~ay~k-  626 (1060)
T PLN03218        554 QSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKAC-ANAGQVDRAKEVYQMIHEYNIKG----TPEVYTIAVNSCSQ-  626 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHh-
Confidence            99999999999999862  1356764 3444444443 45789999999999998853211    13566667767655 


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARST--NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL  362 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l  362 (444)
                                .|+.++|++.|++.. +.  .|+ ...+..+...+.+.|++++|.+.+++..+.........|..+...|
T Consensus       627 ----------~G~~deAl~lf~eM~-~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay  694 (1060)
T PLN03218        627 ----------KGDWDFALSIYDDMK-KKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC  694 (1060)
T ss_pred             ----------cCCHHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence                      467899999999998 65  454 6788899999999999999999999998854322248999999999


Q ss_pred             HHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          363 SAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       363 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      .+.|++++|+..|++..+.  .|   +...|..+...+.+.|++++|++.+++..+
T Consensus       695 ~k~G~~eeA~~lf~eM~~~g~~P---dvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        695 SNAKNWKKALELYEDIKSIKLRP---TVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999988754  56   667899999999999999999999998764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=5.5e-14  Score=129.52  Aligned_cols=230  Identities=16%  Similarity=0.132  Sum_probs=156.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-----HHHHHHHH
Q 013375          166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLIASKI  240 (444)
Q Consensus       166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~-----a~~~~~~~  240 (444)
                      ..|.-+.-..+.++|++.|-.+++.+|...++++.||.++.+.|..+.|+.+-+..+   ..|+.+.     +...+|.-
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHHH
Confidence            345555556777777777777777777777777777777777777777777777666   4666432     33334443


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH--
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS--  318 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~--  318 (444)
                       |...|-+|.|...|....+. +.    ....|.-.|-.+|...           .++++||+.-++.+ ++.|++..  
T Consensus       117 -ym~aGl~DRAE~~f~~L~de-~e----fa~~AlqqLl~IYQ~t-----------reW~KAId~A~~L~-k~~~q~~~~e  178 (389)
T COG2956         117 -YMAAGLLDRAEDIFNQLVDE-GE----FAEGALQQLLNIYQAT-----------REWEKAIDVAERLV-KLGGQTYRVE  178 (389)
T ss_pred             -HHHhhhhhHHHHHHHHHhcc-hh----hhHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHH-HcCCccchhH
Confidence             23456777777777766652 22    1234566666666664           34777777777777 77776643  


Q ss_pred             ---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-HHHHHHH
Q 013375          319 ---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLRTK  394 (444)
Q Consensus       319 ---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l  394 (444)
                         .+.-|+..+....+.+.|+..++||+.-||++ +.+-..+|.+...+|+|+.|+..++++++.+|  +. +++.-.+
T Consensus       179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~--~yl~evl~~L  255 (389)
T COG2956         179 IAQFYCELAQQALASSDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNP--EYLSEVLEML  255 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence               34567777777777777777777777777777 47777777777777777777777777777777  44 5666677


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          395 AKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       395 a~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      -.+|..+|+.++.+..++++.+..+
T Consensus       256 ~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         256 YECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHccC
Confidence            7777777777777777777766544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.67  E-value=6.7e-13  Score=132.09  Aligned_cols=307  Identities=15%  Similarity=0.049  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013375           65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL  144 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~  144 (444)
                      .+..-+..+.+.+-++=|.++|..+|+.    .|....-+ ...+.+- .                   ..|..++-..+
T Consensus       518 tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slW-lra~~~e-k-------------------~hgt~Esl~Al  572 (913)
T KOG0495|consen  518 TWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLW-LRAAMFE-K-------------------SHGTRESLEAL  572 (913)
T ss_pred             HHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHH-HHHHHHH-H-------------------hcCcHHHHHHH
Confidence            3444456778899999999999999998    55432211 1111110 0                   01122222222


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcC
Q 013375          145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG  224 (444)
Q Consensus       145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~  224 (444)
                      +     +.++...|..+..|.+.+.-+-..|+...|...+.++++.+|++.+.|+.--.+.....++++|...|.++-  
T Consensus       573 l-----qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar--  645 (913)
T KOG0495|consen  573 L-----QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR--  645 (913)
T ss_pred             H-----HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh--
Confidence            2     233455566666666666666666666666666666666666666666666666666666666666666666  


Q ss_pred             CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013375          225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA  304 (444)
Q Consensus       225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~  304 (444)
                      ...|..- +++-.+.+ ..-++..++|+..++++|+.+|.-     ...|+.+|.++.++           ++.+.|.+.
T Consensus       646 ~~sgTeR-v~mKs~~~-er~ld~~eeA~rllEe~lk~fp~f-----~Kl~lmlGQi~e~~-----------~~ie~aR~a  707 (913)
T KOG0495|consen  646 SISGTER-VWMKSANL-ERYLDNVEEALRLLEEALKSFPDF-----HKLWLMLGQIEEQM-----------ENIEMAREA  707 (913)
T ss_pred             ccCCcch-hhHHHhHH-HHHhhhHHHHHHHHHHHHHhCCch-----HHHHHHHhHHHHHH-----------HHHHHHHHH
Confidence            5555422 22222221 233456666666666666655431     34566666666543           345556666


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013375          305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       305 ~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~  384 (444)
                      |..-+ +.-|+.+..|..|+.+-.+.|++-.|...+.++.-.||++. ..|...-.+-...|..+.|.....+||+..|+
T Consensus       708 Y~~G~-k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  708 YLQGT-KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHhcc-ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            66666 56666666666666666666666666666666666666653 55555555555556666666666666555553


Q ss_pred             C----------------------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          385 W----------------------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       385 ~----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .                            .|+.++...|.++-...+++.|.+.|.+++.+.|+..+
T Consensus       786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD  852 (913)
T KOG0495|consen  786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD  852 (913)
T ss_pred             cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence            1                            23444555555666666666666666666666665544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=7.8e-15  Score=138.97  Aligned_cols=175  Identities=18%  Similarity=0.094  Sum_probs=119.1

Q ss_pred             HHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhh
Q 013375          200 ILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGI  279 (444)
Q Consensus       200 ~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~  279 (444)
                      .-+.++.-.|++++|.+.--..+  ++++.+.++++..+.+. ...+..+.|+.+|+++|...|.+.+.  ..+....-.
T Consensus       174 lka~cl~~~~~~~~a~~ea~~il--kld~~n~~al~vrg~~~-yy~~~~~ka~~hf~qal~ldpdh~~s--k~~~~~~k~  248 (486)
T KOG0550|consen  174 LKAECLAFLGDYDEAQSEAIDIL--KLDATNAEALYVRGLCL-YYNDNADKAINHFQQALRLDPDHQKS--KSASMMPKK  248 (486)
T ss_pred             hhhhhhhhcccchhHHHHHHHHH--hcccchhHHHHhccccc-ccccchHHHHHHHhhhhccChhhhhH--HhHhhhHHH
Confidence            34555555566666666655555  56666655555443332 23445556666666666533222110  011111111


Q ss_pred             hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH
Q 013375          280 SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW  355 (444)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  355 (444)
                      +..  .+....+..+.|++.+|.+.|..++ .+||+|..    .++++|.+..+.|++.+|+..++.|++|||.. ..++
T Consensus       249 le~--~k~~gN~~fk~G~y~~A~E~Yteal-~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikal  324 (486)
T KOG0550|consen  249 LEV--KKERGNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKAL  324 (486)
T ss_pred             HHH--HHhhhhhHhhccchhHHHHHHHHhh-cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHH
Confidence            100  0111112245688999999999999 99998754    57899999999999999999999999999998 6999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          356 LLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       356 ~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      +..|.++..++++++|+..|++|++...
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999998876

>PLN03077 Protein ECB2; Provisional

Probab=99.64  E-value=7.1e-13  Score=145.94  Aligned_cols=117  Identities=9%  Similarity=0.039  Sum_probs=97.3

Q ss_pred             HHhhHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375          294 RATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                      +.|+.++|.+.|++.. +..+  .+...+..+..++.+.|++++|.+.+++. .+.|+  ...|..|-..+...|+.+.|
T Consensus       601 ~~g~v~ea~~~f~~M~-~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd--~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        601 RSGMVTQGLEYFHSME-EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD--PAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             hcChHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCChHHH
Confidence            3477899999999887 5543  23467888899999999999999999885 46777  37888887788888999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      ....++++++.|  ++...+..++.+|...|++++|....+...+
T Consensus       677 e~~a~~l~~l~p--~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        677 ELAAQHIFELDP--NSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHhhCC--CCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            999999999999  8888999999999999999999888877654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.64  E-value=1.8e-12  Score=129.11  Aligned_cols=261  Identities=17%  Similarity=0.073  Sum_probs=228.0

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE  210 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~  210 (444)
                      .+...+-++-|+..|     ..+++..|....+|......-..-|-.++-...|++++...|.....|...+..+...|+
T Consensus       525 ~~~k~~~~~carAVy-----a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd  599 (913)
T KOG0495|consen  525 SCEKRPAIECARAVY-----AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD  599 (913)
T ss_pred             HHHhcchHHHHHHHH-----HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence            445556666666654     446788899999999988888888999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013375          211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT  290 (444)
Q Consensus       211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~  290 (444)
                      ...|..++.++.  ..+|++.+.++....+.. ...++++|...+.++....+.      .+.|+--......       
T Consensus       600 v~~ar~il~~af--~~~pnseeiwlaavKle~-en~e~eraR~llakar~~sgT------eRv~mKs~~~er~-------  663 (913)
T KOG0495|consen  600 VPAARVILDQAF--EANPNSEEIWLAAVKLEF-ENDELERARDLLAKARSISGT------ERVWMKSANLERY-------  663 (913)
T ss_pred             cHHHHHHHHHHH--HhCCCcHHHHHHHHHHhh-ccccHHHHHHHHHHHhccCCc------chhhHHHhHHHHH-------
Confidence            999999999999  899999999987766654 457899999999999985433      2344433332222       


Q ss_pred             hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013375          291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED  370 (444)
Q Consensus       291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e  370 (444)
                          ++..++|+..+++++ +.-|+.+..|..+|+++.++++++.|...|...++.-|... ..|..|+.+-.+.|..-.
T Consensus       664 ----ld~~eeA~rllEe~l-k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~~~~~r  737 (913)
T KOG0495|consen  664 ----LDNVEEALRLLEEAL-KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKDGQLVR  737 (913)
T ss_pred             ----hhhHHHHHHHHHHHH-HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHhcchhh
Confidence                356899999999999 99999999999999999999999999999999999999995 999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      |...++++.-.+|  ++..+|...-....+.|..++|.....+||.=+|+
T Consensus       738 AR~ildrarlkNP--k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  738 ARSILDRARLKNP--KNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHHHHHHHHhcCC--CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            9999999999999  89999999999999999999999999999986654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.62  E-value=5.7e-14  Score=126.68  Aligned_cols=150  Identities=15%  Similarity=0.057  Sum_probs=120.0

Q ss_pred             HHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhh
Q 013375          203 LCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS  282 (444)
Q Consensus       203 ~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~  282 (444)
                      ..|+..|+++......++..    +|...          +...++.++++..++++++..|++     ..+|+.+|.+|.
T Consensus        24 ~~Y~~~g~~~~v~~~~~~~~----~~~~~----------~~~~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~~~   84 (198)
T PRK10370         24 GSYLLSPKWQAVRAEYQRLA----DPLHQ----------FASQQTPEAQLQALQDKIRANPQN-----SEQWALLGEYYL   84 (198)
T ss_pred             HHHHHcchHHHHHHHHHHHh----Ccccc----------ccCchhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHH
Confidence            34566666666544443333    33321          112456678888888888865544     568888888886


Q ss_pred             hhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhcCCCChHHHHHHH
Q 013375          283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY-AEQRK--LNAAHYYAKMLLKLEGGSNLKGWLLMA  359 (444)
Q Consensus       283 ~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~-~~~g~--~~~A~~~~~~al~l~P~~~~~~~~~la  359 (444)
                      ..           |++++|+.+|++++ +++|+++.++..+|.++ ...|+  +++|...++++++++|+++ .++.++|
T Consensus        85 ~~-----------g~~~~A~~a~~~Al-~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~-~al~~LA  151 (198)
T PRK10370         85 WR-----------NDYDNALLAYRQAL-QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV-TALMLLA  151 (198)
T ss_pred             HC-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh-hHHHHHH
Confidence            54           67899999999999 99999999999999975 67787  5999999999999999994 9999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhcCC
Q 013375          360 RILSAQKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       360 ~~l~~~g~~~eA~~~~~~al~~~P~  384 (444)
                      .++..+|+|++|+.+|+++++..|.
T Consensus       152 ~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        152 SDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999883

>PLN03077 Protein ECB2; Provisional

Probab=99.60  E-value=3.8e-12  Score=140.18  Aligned_cols=336  Identities=10%  Similarity=0.003  Sum_probs=188.2

Q ss_pred             HHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCC
Q 013375           16 KAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWN   95 (444)
Q Consensus        16 ~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~   95 (444)
                      .-.+|.+.|++++|...|....+          ++.            ..+..+...|.+.|++++|+..|+++....  
T Consensus       228 Li~~y~k~g~~~~A~~lf~~m~~----------~d~------------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g--  283 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDRMPR----------RDC------------ISWNAMISGYFENGECLEGLELFFTMRELS--  283 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC----------CCc------------chhHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence            34556677777777776654321          111            133444456778888888888888887662  


Q ss_pred             CChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 013375           96 LDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG  175 (444)
Q Consensus        96 ~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g  175 (444)
                      ..|+... + ..+    +                ..+...|+.+.|..++...    .-...+.|..+|+.+...|.+.|
T Consensus       284 ~~Pd~~t-y-~~l----l----------------~a~~~~g~~~~a~~l~~~~----~~~g~~~d~~~~n~Li~~y~k~g  337 (857)
T PLN03077        284 VDPDLMT-I-TSV----I----------------SACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLSLG  337 (857)
T ss_pred             CCCChhH-H-HHH----H----------------HHHHhcCChHHHHHHHHHH----HHhCCccchHHHHHHHHHHHhcC
Confidence            2232210 0 000    0                1122234444554443111    11112234556666666666666


Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHH
Q 013375          176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFA  255 (444)
Q Consensus       176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~  255 (444)
                      ++++|...|++...   .+...|..+...|.+.|++++|+..|++..+....|+.......+. . +...|+.++|...+
T Consensus       338 ~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-a-~~~~g~~~~a~~l~  412 (857)
T PLN03077        338 SWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS-A-CACLGDLDVGVKLH  412 (857)
T ss_pred             CHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-H-HhccchHHHHHHHH
Confidence            66666666665442   2344566666666666666666666665442234455433222221 1 12345555666665


Q ss_pred             HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc--------------------hHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375          256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------------------DFDRATRQAKALQALVSAARSTNMR  315 (444)
Q Consensus       256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------------------~~~~~~~~~eA~~~~~~al~~~~P~  315 (444)
                      ..+++.-...+    ...+..+-..|.+.|+...+                    .+.+.|+.++|+..|++.+....|+
T Consensus       413 ~~~~~~g~~~~----~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd  488 (857)
T PLN03077        413 ELAERKGLISY----VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN  488 (857)
T ss_pred             HHHHHhCCCcc----hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC
Confidence            55555311110    12222333333322211100                    0123467788999998888333454


Q ss_pred             CHHHHHHHH----------------------------------HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 013375          316 DLSILYRLS----------------------------------LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI  361 (444)
Q Consensus       316 ~~~a~~~lg----------------------------------~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~  361 (444)
                      .......++                                  ..|.+.|++++|...|++.   .| + ...|..+...
T Consensus       489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~-d-~~s~n~lI~~  563 (857)
T PLN03077        489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK-D-VVSWNILLTG  563 (857)
T ss_pred             HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CC-C-hhhHHHHHHH
Confidence            443333332                                  5567778888888888775   44 3 4889999999


Q ss_pred             HHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013375          362 LSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       362 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  418 (444)
                      +...|+.++|+..|++..+.  .|  | ...+..+-..+...|..++|+..|+...+-.
T Consensus       564 ~~~~G~~~~A~~lf~~M~~~g~~P--d-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~  619 (857)
T PLN03077        564 YVAHGKGSMAVELFNRMVESGVNP--D-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY  619 (857)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCC--C-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence            99999999999999988764  46  3 3445556667888999999999999887443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.59  E-value=2.3e-13  Score=122.77  Aligned_cols=175  Identities=18%  Similarity=0.070  Sum_probs=90.2

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013375          180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRAL  259 (444)
Q Consensus       180 A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al  259 (444)
                      +...+-+....+|++.++ .+++..+...|+-+.+..+..+++  ..+|++...+...+.... ..|++.+|+..++++.
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~  127 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAA  127 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHh
Confidence            444444455556666666 666666666666666666666655  455555544322222211 1223333333333333


Q ss_pred             HHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013375          260 ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYY  339 (444)
Q Consensus       260 ~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  339 (444)
                      ...|++     +.+|..+|.+|.+           .|++++|...|.+++ ++.|+++.+..|+|..+.-.|+++.|..+
T Consensus       128 ~l~p~d-----~~~~~~lgaaldq-----------~Gr~~~Ar~ay~qAl-~L~~~~p~~~nNlgms~~L~gd~~~A~~l  190 (257)
T COG5010         128 RLAPTD-----WEAWNLLGAALDQ-----------LGRFDEARRAYRQAL-ELAPNEPSIANNLGMSLLLRGDLEDAETL  190 (257)
T ss_pred             ccCCCC-----hhhhhHHHHHHHH-----------ccChhHHHHHHHHHH-HhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence            321111     2233334444432           234556666666666 66666666666666666666666666666


Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHH
Q 013375          340 AKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN  376 (444)
Q Consensus       340 ~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~  376 (444)
                      +.++...-+.+. .+..+++.+...+|++++|..+..
T Consensus       191 ll~a~l~~~ad~-~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         191 LLPAYLSPAADS-RVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             HHHHHhCCCCch-HHHHHHHHHHhhcCChHHHHhhcc
Confidence            666655555443 566666666666666666655543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.58  E-value=2.8e-14  Score=120.75  Aligned_cols=117  Identities=16%  Similarity=0.185  Sum_probs=112.0

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      +.|++++ .++|++..+.+.+|..+...|++++|+..+++++.++|+++ .+|..+|.++..+|++++|+.+++++++.+
T Consensus         4 ~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLL-GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS-RYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHH-cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4688999 99999999999999999999999999999999999999995 999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      |  +++..++++|.++...|++++|+..|++++++.|+...
T Consensus        82 p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        82 P--DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            9  89999999999999999999999999999999986654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.58  E-value=1.3e-13  Score=145.26  Aligned_cols=160  Identities=14%  Similarity=0.074  Sum_probs=107.0

Q ss_pred             HHHHhcCCHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCC
Q 013375          169 FAFSIAGDLSSLATQIEEL---LPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP  245 (444)
Q Consensus       169 ~~l~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~  245 (444)
                      .++.+.|....+.+.+-++   ..--|.+++++++||.+..+.|++++|+..++.++  .+.|++..++...+.++.+ .
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~-~  133 (694)
T PRK15179         57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIH--QRFPDSSEAFILMLRGVKR-Q  133 (694)
T ss_pred             HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHH-h
Confidence            3444444443333333333   33457778888888888888888888888888888  8888888877666555422 2


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375          246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL  325 (444)
Q Consensus       246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~  325 (444)
                                                                        +++++|+..+++++ ..+|+++.+++.+|.
T Consensus       134 --------------------------------------------------~~~eeA~~~~~~~l-~~~p~~~~~~~~~a~  162 (694)
T PRK15179        134 --------------------------------------------------QGIEAGRAEIELYF-SGGSSSAREILLEAK  162 (694)
T ss_pred             --------------------------------------------------ccHHHHHHHHHHHh-hcCCCCHHHHHHHHH
Confidence                                                              34566666666666 666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ++.++|++++|+..|+++++.+|+++ .+|..+|.++...|+.++|...|++|++...
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~-~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFE-NGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            66666666666666666666666663 6666666666666666666666666666654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.58  E-value=1.7e-13  Score=138.12  Aligned_cols=227  Identities=17%  Similarity=0.108  Sum_probs=197.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      |.-...--.++.++...|=...|+..|++        .+.|-....+|...|+..+|.....+-+  . +|.++..|-.+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l--e-k~~d~~lyc~L  463 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL--E-KDPDPRLYCLL  463 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh--c-CCCcchhHHHh
Confidence            34445566899999999999999999985        5778889999999999999999999999  6 67777777777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL  317 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~  317 (444)
                      |.+..    +    -.+|+++.+..+.    .++.|+..+|.....           .+++.++.+.++..+ +++|-..
T Consensus       464 GDv~~----d----~s~yEkawElsn~----~sarA~r~~~~~~~~-----------~~~fs~~~~hle~sl-~~nplq~  519 (777)
T KOG1128|consen  464 GDVLH----D----PSLYEKAWELSNY----ISARAQRSLALLILS-----------NKDFSEADKHLERSL-EINPLQL  519 (777)
T ss_pred             hhhcc----C----hHHHHHHHHHhhh----hhHHHHHhhcccccc-----------chhHHHHHHHHHHHh-hcCccch
Confidence            77642    2    2788999886433    235677787776543           357899999999999 9999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      ..||.+|.+..+.++.+.|.++|.+++.++|++ .++|++++..|...|+-.+|...+.+|++-+-  +++.+|-|.-.+
T Consensus       520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlv  596 (777)
T KOG1128|consen  520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLV  596 (777)
T ss_pred             hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhh
Confidence            999999999999999999999999999999999 59999999999999999999999999999987  899999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          398 QLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       398 ~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ....|.+++|+.+|.+.+++.++-.
T Consensus       597 svdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  597 SVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hhhcccHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999877544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.55  E-value=2.3e-13  Score=143.31  Aligned_cols=134  Identities=16%  Similarity=0.066  Sum_probs=126.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..++.+||.+....           |++++|...+++++ +++|++..++.+++.++.+.+++++|+..+++++..+|++
T Consensus        86 ~~~~~~La~i~~~~-----------g~~~ea~~~l~~~~-~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~  153 (694)
T PRK15179         86 ELFQVLVARALEAA-----------HRSDEGLAVWRGIH-QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS  153 (694)
T ss_pred             HHHHHHHHHHHHHc-----------CCcHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence            46778888877554           67899999999999 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                       ..+++.+|.++..+|+|++|+.+|++++..+|  ++..++..+|.++...|+.++|..+|+++++..-
T Consensus       154 -~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        154 -AREILLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             -HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence             59999999999999999999999999999999  8999999999999999999999999999998654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.53  E-value=1.3e-13  Score=116.68  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=104.1

Q ss_pred             hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          311 STN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       311 ~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      .+. |++-+..|.+|..+...|++++|.+.|+-...++|.+ ...|++||.++..+|+|++|+..|.+|+.++|  +++.
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~  104 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQ  104 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCch
Confidence            778 8899999999999999999999999999999999999 59999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       390 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .+++.|.++...|+.+.|.+.|+.++..+.+++
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence            999999999999999999999999999995443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.53  E-value=1e-12  Score=118.61  Aligned_cols=172  Identities=20%  Similarity=0.092  Sum_probs=154.6

Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375          153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      ...++|+|.++ ..+...+...|+-+.+..+..++.-.+|.+.+....+|....+.|++.+|+..++++.  .++|++..
T Consensus        59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~  135 (257)
T COG5010          59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWE  135 (257)
T ss_pred             HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChh
Confidence            34678999999 9999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST  312 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~  312 (444)
                      ++..+|.+ +.+.|++++|...|.+++++.+.+     ..+..++|+.+.-.           |+++.|...+..+. ..
T Consensus       136 ~~~~lgaa-ldq~Gr~~~Ar~ay~qAl~L~~~~-----p~~~nNlgms~~L~-----------gd~~~A~~lll~a~-l~  197 (257)
T COG5010         136 AWNLLGAA-LDQLGRFDEARRAYRQALELAPNE-----PSIANNLGMSLLLR-----------GDLEDAETLLLPAY-LS  197 (257)
T ss_pred             hhhHHHHH-HHHccChhHHHHHHHHHHHhccCC-----chhhhhHHHHHHHc-----------CCHHHHHHHHHHHH-hC
Confidence            99877655 577899999999999999976655     35778889887654           67999999999999 88


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375          313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK  345 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  345 (444)
                      -+.|..+..||+.+...+|++++|.+...+=+.
T Consensus       198 ~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         198 PAADSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             CCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            888999999999999999999999998776543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=8.6e-14  Score=127.72  Aligned_cols=109  Identities=12%  Similarity=0.076  Sum_probs=103.5

Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013375          293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~  372 (444)
                      .+.++|.+|+..|.+|+ +++|.|+-.|.+.+.+|.++|.++.|++.++.|+.+||.+ +.+|..||.++..+|+|++|+
T Consensus        92 m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccCcHHHHH
Confidence            45688999999999999 9999999999999999999999999999999999999999 699999999999999999999


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013375          373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLK  405 (444)
Q Consensus       373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~  405 (444)
                      ..|++||+++|  +|...+.++..+..++++.+
T Consensus       170 ~aykKaLeldP--~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  170 EAYKKALELDP--DNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHhhhccCC--CcHHHHHHHHHHHHHhcCCC
Confidence            99999999999  89888889988888887776

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.51  E-value=1.1e-12  Score=139.27  Aligned_cols=215  Identities=13%  Similarity=0.037  Sum_probs=175.3

Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013375          154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA  233 (444)
Q Consensus       154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a  233 (444)
                      ..-.|.+..++..|..++...|++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|..+  .++  ..-|++.  
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--~~~~~~~--   97 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI--DSFSQNL--   97 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh--hhccccc--
Confidence            3456889999999999999999999999999999999999999999999999999999888877  777  4544432  


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375          234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN  313 (444)
Q Consensus       234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  313 (444)
                                   ++ .++.++...+...+.+     ..|++.+|.||.+.           |+.++|...|++++ ++|
T Consensus        98 -------------~~-~~ve~~~~~i~~~~~~-----k~Al~~LA~~Ydk~-----------g~~~ka~~~yer~L-~~D  146 (906)
T PRK14720         98 -------------KW-AIVEHICDKILLYGEN-----KLALRTLAEAYAKL-----------NENKKLKGVWERLV-KAD  146 (906)
T ss_pred             -------------ch-hHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-hcC
Confidence                         12 3334444333324333     35899999999764           67899999999999 999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH-
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR-  392 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-  392 (444)
                      |+|+.+++++|..|... ++++|+.++.+|+..               +...++|.++..++.+.+..+|  ++...++ 
T Consensus       147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~--~d~d~f~~  208 (906)
T PRK14720        147 RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS--DDFDFFLR  208 (906)
T ss_pred             cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc--ccchHHHH
Confidence            99999999999999999 999999999999886               3345789999999999999999  6554422 


Q ss_pred             -------HHH------------HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          393 -------TKA------------KVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       393 -------~la------------~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                             .++            ..+...+++++++..++.+|++.|++..
T Consensus       209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~  258 (906)
T PRK14720        209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK  258 (906)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence                   223            5566777899999999999998887544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.49  E-value=5.4e-11  Score=118.88  Aligned_cols=337  Identities=18%  Similarity=0.130  Sum_probs=233.6

Q ss_pred             HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375           12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL   91 (444)
Q Consensus        12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~   91 (444)
                      ++|.+.+-.++.++|....+.++.+|..+        |++           .+.+...|..+...|+.++|....+.+++
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~--------~eH-----------geslAmkGL~L~~lg~~~ea~~~vr~glr   69 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKF--------PEH-----------GESLAMKGLTLNCLGKKEEAYELVRLGLR   69 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhC--------Ccc-----------chhHHhccchhhcccchHHHHHHHHHHhc
Confidence            56788888889999999999999998853        332           23566677788899999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375           92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF  171 (444)
Q Consensus        92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l  171 (444)
                      .    |+.+.- -..-++.                    ++....+|+|||..+     +.++...|+|..+|..++...
T Consensus        70 ~----d~~S~v-CwHv~gl--------------------~~R~dK~Y~eaiKcy-----~nAl~~~~dN~qilrDlslLQ  119 (700)
T KOG1156|consen   70 N----DLKSHV-CWHVLGL--------------------LQRSDKKYDEAIKCY-----RNALKIEKDNLQILRDLSLLQ  119 (700)
T ss_pred             c----Ccccch-hHHHHHH--------------------HHhhhhhHHHHHHHH-----HHHHhcCCCcHHHHHHHHHHH
Confidence            7    665421 1122221                    223345799999875     567888999999999999999


Q ss_pred             HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC--CCC-----hHHHHHHHHHHhcC
Q 013375          172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKC-----LPALLIASKICGEY  244 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~--P~~-----~~a~~~~~~~~~~~  244 (444)
                      .++|+++.....=.+.+++.|..-..|+.++.++.-.|.+..|....+.-.+ ..+  |+.     ....+....+.. .
T Consensus       120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~-t~~~~~s~~~~e~se~~Ly~n~i~~-E  197 (700)
T KOG1156|consen  120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK-TQNTSPSKEDYEHSELLLYQNQILI-E  197 (700)
T ss_pred             HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHHHHHHHH-H
Confidence            9999999999999999999999999999999999999999999988888773 222  332     223333333332 2


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHH-HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTA-NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL  323 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a-~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l  323 (444)
                      .|..++|.+...+--...      ....+ ....+..+           .+.++.++|+..|+..+ ..+|+|..-+..+
T Consensus       198 ~g~~q~ale~L~~~e~~i------~Dkla~~e~ka~l~-----------~kl~~lEeA~~~y~~Ll-~rnPdn~~Yy~~l  259 (700)
T KOG1156|consen  198 AGSLQKALEHLLDNEKQI------VDKLAFEETKADLL-----------MKLGQLEEAVKVYRRLL-ERNPDNLDYYEGL  259 (700)
T ss_pred             cccHHHHHHHHHhhhhHH------HHHHHHhhhHHHHH-----------HHHhhHHhHHHHHHHHH-hhCchhHHHHHHH
Confidence            344444444332111100      00000 01111122           45688999999999999 9999999877655


Q ss_pred             HHHHHHcCCHHHHH-HHHH-------------------------------------------------------------
Q 013375          324 SLEYAEQRKLNAAH-YYAK-------------------------------------------------------------  341 (444)
Q Consensus       324 g~~~~~~g~~~~A~-~~~~-------------------------------------------------------------  341 (444)
                      =.++..-.+--+++ ..|.                                                             
T Consensus       260 ~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~l  339 (700)
T KOG1156|consen  260 EKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFL  339 (700)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHH
Confidence            44442111111111 1111                                                             


Q ss_pred             -HHHh-----hcCC------------CC-hHHH--HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013375          342 -MLLK-----LEGG------------SN-LKGW--LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV  400 (444)
Q Consensus       342 -~al~-----l~P~------------~~-~~~~--~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~  400 (444)
                       +.+.     +++.            .| .-+|  +-++.-+...|+++.|..+++.|++-.|  ..++.+...|.++..
T Consensus       340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP--TliEly~~KaRI~kH  417 (700)
T KOG1156|consen  340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP--TLIELYLVKARIFKH  417 (700)
T ss_pred             HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHh
Confidence             1000     1111            00 1233  3456667788999999999999999999  899999999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHH
Q 013375          401 QGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       401 ~g~~~~A~~~~~~al~l~~  419 (444)
                      .|.+++|...+.++.++..
T Consensus       418 ~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  418 AGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             cCChHHHHHHHHHHHhccc
Confidence            9999999999999987765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.49  E-value=3.7e-11  Score=122.51  Aligned_cols=269  Identities=14%  Similarity=-0.002  Sum_probs=193.2

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-  209 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-  209 (444)
                      ++...|++++|+..|..     .....++...++...|.++...|++++|...|+..|..+|++...+..|..++.... 
T Consensus        13 il~e~g~~~~AL~~L~~-----~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEK-----NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHCCCHHHHHHHHHh-----hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence            45567899999998732     334557788899999999999999999999999999999999999999988884433 


Q ss_pred             ----CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHcCC--------------------
Q 013375          210 ----EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE-GATFASRALECLGD--------------------  264 (444)
Q Consensus       210 ----~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e-A~~~~~~al~~~~~--------------------  264 (444)
                          ..+.-...|++.-  ...|....+...-...  ..+..+.+ +..+.+..+..--|                    
T Consensus        88 ~~~~~~~~~~~~y~~l~--~~yp~s~~~~rl~L~~--~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELA--EKYPRSDAPRRLPLDF--LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             cccccHHHHHHHHHHHH--HhCccccchhHhhccc--CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence                4566678888877  6677643332111000  01111111 11112222211100                    


Q ss_pred             ------------------------CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          265 ------------------------GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       265 ------------------------~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                                              .++.....++++++..|.           ..|++++|++.+++++ ...|+.++.+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd-----------~~g~~~~Al~~Id~aI-~htPt~~ely  231 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD-----------YLGDYEKALEYIDKAI-EHTPTLVELY  231 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH-----------HhCCHHHHHHHHHHHH-hcCCCcHHHH
Confidence                                    001111233455555553           4578999999999999 9999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCCc----HHHHHH-
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWEQ----GELLRT-  393 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~--P~~~~----~~~~~~-  393 (444)
                      +..|.++-..|++.+|.+.++.|..+|+.|- -.-...+..+.+.|+.++|...+......+  |. .+    -.+||. 
T Consensus       232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~-~~L~~mQc~Wf~~  309 (517)
T PF12569_consen  232 MTKARILKHAGDLKEAAEAMDEARELDLADR-YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL-SNLNDMQCMWFET  309 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc-cCHHHHHHHHHHH
Confidence            9999999999999999999999999999972 455556777888999999999998877554  31 11    125554 


Q ss_pred             -HHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          394 -KAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       394 -la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                       -|.++.++|++..|+..|..+.++..+-.
T Consensus       310 e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  310 ECAEAYLRQGDYGLALKRFHAVLKHFDDFE  339 (517)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence             48899999999999999999988766543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.45  E-value=2.3e-12  Score=108.89  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=100.9

Q ss_pred             HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013375          254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL  333 (444)
Q Consensus       254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~  333 (444)
                      .++++++. +|+.    ..+.+.+|.++...           +++++|+..|++++ ..+|+++.+++++|.++..+|++
T Consensus         5 ~~~~~l~~-~p~~----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~~~~   67 (135)
T TIGR02552         5 TLKDLLGL-DSEQ----LEQIYALAYNLYQQ-----------GRYDEALKLFQLLA-AYDPYNSRYWLGLAACCQMLKEY   67 (135)
T ss_pred             hHHHHHcC-Chhh----HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHH
Confidence            45666663 3321    34556666666543           57899999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      ++|+..++++++++|+++ ..++.+|.++...|++++|+..++++++..|  ++....
T Consensus        68 ~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~  122 (135)
T TIGR02552        68 EEAIDAYALAAALDPDDP-RPYFHAAECLLALGEPESALKALDLAIEICG--ENPEYS  122 (135)
T ss_pred             HHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchHH
Confidence            999999999999999994 9999999999999999999999999999999  665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.45  E-value=4.9e-11  Score=121.58  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      .++......++...|++++|++.++..-..-++...+.-..|.++..+|++++|...|+..|  ..+|+|..-+..+...
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li--~rNPdn~~Yy~~L~~~   81 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI--DRNPDNYDYYRGLEEA   81 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHH
Confidence            44555667788999999999999999999999999999999999999999999999999999  8999998766544433


Q ss_pred             Hhc----CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh-------hhhhhhh--hhchH----------HHHhh
Q 013375          241 CGE----YPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS-------LSAQSKV--AITDF----------DRATR  297 (444)
Q Consensus       241 ~~~----~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~-------~~~~~~~--~~~~~----------~~~~~  297 (444)
                      ...    ..+..+.-...|+...+..|....+....-.+.-|.-       |......  .++.+          .+..-
T Consensus        82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~  161 (517)
T PF12569_consen   82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI  161 (517)
T ss_pred             HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence            211    1234667788888877766543211000000001111       1111000  01100          11111


Q ss_pred             HHHHHHHHHHHHHhh------------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 013375          298 QAKALQALVSAARST------------NMRDLS--ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS  363 (444)
Q Consensus       298 ~~eA~~~~~~al~~~------------~P~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~  363 (444)
                      ..+-+..|...+ +.            +|....  +++.++..|...|++++|++++++|++..|.. .+.++..|.|+.
T Consensus       162 i~~l~~~~~~~l-~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilK  239 (517)
T PF12569_consen  162 IESLVEEYVNSL-ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHhh-cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence            122222333332 22            122222  34889999999999999999999999999998 599999999999


Q ss_pred             HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       364 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      ..|++++|..+++.|-.+++  .+--+..--+..+.+.|++++|...+..-
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~F  288 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLF  288 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence            99999999999999999999  77666666788889999999999877543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.45  E-value=2.9e-11  Score=120.77  Aligned_cols=258  Identities=15%  Similarity=0.028  Sum_probs=186.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375          137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       137 ~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~  216 (444)
                      +|...+..     .+.+++..|+.++..-..|..+...|+.++|....+.++..++.+.--|.-+|.++....+|++|++
T Consensus        22 QYkkgLK~-----~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   22 QYKKGLKL-----IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHhHHHH-----HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence            44455544     3678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375          217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT  296 (444)
Q Consensus       217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~  296 (444)
                      +|+.|+  ..+|+|.+.+.-++-+ ..+.++++.....-.+.++..|..     -.-|+-.++++.-           .|
T Consensus        97 cy~nAl--~~~~dN~qilrDlslL-Q~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L-----------~g  157 (700)
T KOG1156|consen   97 CYRNAL--KIEKDNLQILRDLSLL-QIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHL-----------LG  157 (700)
T ss_pred             HHHHHH--hcCCCcHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHH-----------HH
Confidence            999999  9999999988755443 334567777677777777754432     1234445544433           24


Q ss_pred             hHHHHHHHHHHHHHhhC---CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013375          297 RQAKALQALVSAARSTN---MRDL-----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY  368 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~---P~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~  368 (444)
                      .+..|....+.-. +..   |+.-     +.......++.+.|.+++|++...+--.---|. .......|.+++++|++
T Consensus       158 ~y~~A~~il~ef~-~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-la~~e~ka~l~~kl~~l  235 (700)
T KOG1156|consen  158 EYKMALEILEEFE-KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-LAFEETKADLLMKLGQL  235 (700)
T ss_pred             HHHHHHHHHHHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-HHHhhhHHHHHHHHhhH
Confidence            5677766665555 333   3332     234555667788899888887775542222222 24556779999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      ++|+..|...+..+|  ||...+..+-.++-   .+....+..+.+.++...+....
T Consensus       236 EeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  236 EEAVKVYRRLLERNP--DNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             HhHHHHHHHHHhhCc--hhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCccc
Confidence            999999999999999  88877766655543   44444444444444444444333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.44  E-value=8.7e-12  Score=129.29  Aligned_cols=228  Identities=15%  Similarity=0.050  Sum_probs=191.5

Q ss_pred             hcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013375          173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA  252 (444)
Q Consensus       173 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~  252 (444)
                      ..++...|...|=++++++|....+|-.||..|..--+...|.++|++|.  .+||.+..+.-..+..+ ......++|.
T Consensus       470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF--eLDatdaeaaaa~adty-ae~~~we~a~  546 (1238)
T KOG1127|consen  470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF--ELDATDAEAAAASADTY-AEESTWEEAF  546 (1238)
T ss_pred             hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhhhhHHHHHHHh-hccccHHHHH
Confidence            34568899999999999999999999999999999999999999999999  99999999887777765 4467888888


Q ss_pred             HHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 013375          253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK  332 (444)
Q Consensus       253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~  332 (444)
                      ...-++-+..+.   ......|..+|..|...           +++-.|+..|+.++ +.+|.|...|..||.+|.+.|+
T Consensus       547 ~I~l~~~qka~a---~~~k~nW~~rG~yyLea-----------~n~h~aV~~fQsAL-R~dPkD~n~W~gLGeAY~~sGr  611 (1238)
T KOG1127|consen  547 EICLRAAQKAPA---FACKENWVQRGPYYLEA-----------HNLHGAVCEFQSAL-RTDPKDYNLWLGLGEAYPESGR  611 (1238)
T ss_pred             HHHHHHhhhchH---HHHHhhhhhccccccCc-----------cchhhHHHHHHHHh-cCCchhHHHHHHHHHHHHhcCc
Confidence            886666554321   22345677788887654           56789999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHhCCHHHH
Q 013375          333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-----EQGELLRTKAKVQLVQGQLKGA  407 (444)
Q Consensus       333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-----~~~~~~~~la~~~~~~g~~~~A  407 (444)
                      +..|++.|.||..++|++ .-+.+-.+.+....|+|++|+..+...+....++     +-.+.+...+..+.-+|=...|
T Consensus       612 y~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ka  690 (1238)
T KOG1127|consen  612 YSHALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKA  690 (1238)
T ss_pred             eehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999998 6899999999999999999999999988765421     3456667777777777877788


Q ss_pred             HHHHHHHHHHHH
Q 013375          408 VETYTHLLAALQ  419 (444)
Q Consensus       408 ~~~~~~al~l~~  419 (444)
                      ...+++.++...
T Consensus       691 vd~~eksie~f~  702 (1238)
T KOG1127|consen  691 VDFFEKSIESFI  702 (1238)
T ss_pred             hHHHHHHHHHHH
Confidence            888888776543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=7.3e-11  Score=105.80  Aligned_cols=182  Identities=16%  Similarity=0.034  Sum_probs=154.7

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      ..|+--.+|.....+....|+.+-|..++.+....-|++...--..|..+...|++++|++.|+..+  .-||.|..++-
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL--~ddpt~~v~~K  124 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL--EDDPTDTVIRK  124 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh--ccCcchhHHHH
Confidence            3455566888899999999999999999999887779999999999999999999999999999999  89999988876


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR  315 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~  315 (444)
                      ....+. ...|+.-+||.....-++.++.+     ..+|..++.+|...           +++++|.-+|++.+ -+.|.
T Consensus       125 RKlAil-ka~GK~l~aIk~ln~YL~~F~~D-----~EAW~eLaeiY~~~-----------~~f~kA~fClEE~l-l~~P~  186 (289)
T KOG3060|consen  125 RKLAIL-KAQGKNLEAIKELNEYLDKFMND-----QEAWHELAEIYLSE-----------GDFEKAAFCLEELL-LIQPF  186 (289)
T ss_pred             HHHHHH-HHcCCcHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhH-----------hHHHHHHHHHHHHH-HcCCC
Confidence            554443 44567779999999999988766     46899999998765           56899999999999 99999


Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          316 DLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      ++..+..+|.+++.+|   +++-|.++|.++++++|.+ ..+|+.+
T Consensus       187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI  231 (289)
T KOG3060|consen  187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGI  231 (289)
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHH
Confidence            9999999999888776   6667999999999999976 4777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.41  E-value=1.6e-10  Score=128.27  Aligned_cols=326  Identities=14%  Similarity=-0.012  Sum_probs=197.7

Q ss_pred             HHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013375           14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC   93 (444)
Q Consensus        14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~   93 (444)
                      ...+.++...|++++|...+..+.+..+.......+       .   ....+...++.++...|++++|...+++++...
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~-------~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  482 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDG-------T---LQAEFNALRAQVAINDGDPEEAERLAELALAEL  482 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccch-------h---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            455667778899999998888776553211000000       0   112333456788899999999999999999851


Q ss_pred             CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 013375           94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW--DPSILDHLSFAF  171 (444)
Q Consensus        94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l  171 (444)
                      +..++.........++.                    .+...|++++|...+..+... .-...+.  ...++..+|.++
T Consensus       483 ~~~~~~~~~~a~~~lg~--------------------~~~~~G~~~~A~~~~~~al~~-~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        483 PLTWYYSRIVATSVLGE--------------------VHHCKGELARALAMMQQTEQM-ARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             CCccHHHHHHHHHHHHH--------------------HHHHcCCHHHHHHHHHHHHHH-HhhhcchHHHHHHHHHHHHHH
Confidence            11111000000111221                    233467888888776433211 1111111  123556788888


Q ss_pred             HhcCCHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC-----ChHHHHHHH
Q 013375          172 SIAGDLSSLATQIEELLPGII--------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-----CLPALLIAS  238 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~-----~~~a~~~~~  238 (444)
                      ...|++++|...+++++.+..        .....+..+|.++...|++++|...+++++  .....     ...++..++
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la  619 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL--EVLSNYQPQQQLQCLAMLA  619 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH--HhhhccCchHHHHHHHHHH
Confidence            899999999999988877521        122345677888888999999999999988  44221     223334445


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~  318 (444)
                      .+. ...|+.++|...+.++.........  ..........+..       ......|+.+.|...+.... ...+....
T Consensus       620 ~~~-~~~G~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~g~~~~A~~~l~~~~-~~~~~~~~  688 (903)
T PRK04841        620 KIS-LARGDLDNARRYLNRLENLLGNGRY--HSDWIANADKVRL-------IYWQMTGDKEAAANWLRQAP-KPEFANNH  688 (903)
T ss_pred             HHH-HHcCCHHHHHHHHHHHHHHHhcccc--cHhHhhHHHHHHH-------HHHHHCCCHHHHHHHHHhcC-CCCCccch
Confidence            554 3468888888888888885433211  0000000000000       00123567777777777666 54333322


Q ss_pred             H----HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          319 I----LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       319 a----~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .    +..+|.++...|++++|+..+++++......     ...++..+|.++..+|++++|...+.+|+++..
T Consensus       689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            2    4578888888888999999888888763221     124677888888888999999999999988876

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=2.2e-12  Score=118.53  Aligned_cols=103  Identities=17%  Similarity=0.082  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      -+-.-|.-+++.++|.+|+..|.+||+++|.++ ..|.+.+.+|.++|.|+.|++.++.||.++|  ....+|..+|.++
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~  159 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHH
Confidence            344567888899999999999999999999995 9999999999999999999999999999999  8999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          399 LVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ..+|++++|++.|+++|+|.|++...
T Consensus       160 ~~~gk~~~A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  160 LALGKYEEAIEAYKKALELDPDNESY  185 (304)
T ss_pred             HccCcHHHHHHHHHhhhccCCCcHHH
Confidence            99999999999999999999988753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.38  E-value=3e-11  Score=128.50  Aligned_cols=232  Identities=15%  Similarity=0.131  Sum_probs=171.5

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---------------
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---------------  195 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---------------  195 (444)
                      .+...+++++|+..+     +..+..+|+...+|+.+|.++...+++..+...  .++..-+.+.               
T Consensus        40 ~~~~~~~~deai~i~-----~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~  112 (906)
T PRK14720         40 AYKSENLTDEAKDIC-----EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY  112 (906)
T ss_pred             HHHhcCCHHHHHHHH-----HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence            455678999999875     456788999999999999999999998888766  7777766666               


Q ss_pred             ----HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          196 ----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       196 ----~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                          .+++.||.+|..+|++++|...|+++|  +.+|+|+.++.+.|..+-..  +.++|+.++.+|+...-        
T Consensus       113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~i--------  180 (906)
T PRK14720        113 GENKLALRTLAEAYAKLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRFI--------  180 (906)
T ss_pred             hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH--------
Confidence                999999999999999999999999999  99999999999888776544  89999999999998421        


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH--------H------------HHHHHcC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL--------S------------LEYAEQR  331 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l--------g------------~~~~~~g  331 (444)
                                            ..+++.++.+...+.+ ..+|++.+.++.+        |            ..|...+
T Consensus       181 ----------------------~~kq~~~~~e~W~k~~-~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~  237 (906)
T PRK14720        181 ----------------------KKKQYVGIEEIWSKLV-HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE  237 (906)
T ss_pred             ----------------------hhhcchHHHHHHHHHH-hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence                                  1246788999999999 9999998875432        3            3445556


Q ss_pred             CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375          332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      ++++++..++.+|+++|++. .+...++.+|.  +.|.+ ...++..++...             +-.....+..++..|
T Consensus       238 ~~~~~i~iLK~iL~~~~~n~-~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~-------------l~~~~~~~~~~i~~f  300 (906)
T PRK14720        238 DWDEVIYILKKILEHDNKNN-KAREELIRFYK--EKYKD-HSLLEDYLKMSD-------------IGNNRKPVKDCIADF  300 (906)
T ss_pred             hhhHHHHHHHHHHhcCCcch-hhHHHHHHHHH--HHccC-cchHHHHHHHhc-------------cccCCccHHHHHHHH
Confidence            67777777777777777763 66666666665  44443 333333333321             111223456666666


Q ss_pred             HHHHHHHHhh
Q 013375          412 THLLAALQVQ  421 (444)
Q Consensus       412 ~~al~l~~~~  421 (444)
                      ++-+.+.++.
T Consensus       301 ek~i~f~~G~  310 (906)
T PRK14720        301 EKNIVFDTGN  310 (906)
T ss_pred             HHHeeecCCC
Confidence            6666555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.34  E-value=3.4e-11  Score=101.99  Aligned_cols=98  Identities=13%  Similarity=0.016  Sum_probs=89.6

Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                      ...+.+|..+..           .|++++|...|+-++ .+||.++..|++||.++..+|++++|+..|.+|+.++|+++
T Consensus        36 ~~lY~~A~~ly~-----------~G~l~~A~~~f~~L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         36 NTLYRYAMQLME-----------VKEFAGAARLFQLLT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHHHHHHHHHHH-----------CCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            345555655544           468999999999999 99999999999999999999999999999999999999997


Q ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          352 LKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                       .++.++|.+++..|+.+.|++.|+.|+...
T Consensus       104 -~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        104 -QAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             -hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence             999999999999999999999999999876

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.34  E-value=6e-11  Score=112.73  Aligned_cols=233  Identities=13%  Similarity=-0.026  Sum_probs=159.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013375          165 DHLSFAFSIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS  238 (444)
Q Consensus       165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~  238 (444)
                      -+||+++...|.|++|+.+..+-|.+.-      ....++|+||.+|...|+-..           ...|....+...- 
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----------~~~pee~g~f~~e-  166 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----------LEAPEEKGAFNAE-  166 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----------CCChhhcccccHH-
Confidence            4678888888888888887777765532      245789999999999996543           2344333222110 


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC-
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD-  316 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~-  316 (444)
                       +    ...++.|+++|..-|+..... +..--.+++-+||..|+-.           |+++.||..-+.-+ .+.... 
T Consensus       167 -v----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL-----------Gdf~~ai~~H~~RL-~ia~efG  229 (639)
T KOG1130|consen  167 -V----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL-----------GDFDQAIHFHKLRL-EIAQEFG  229 (639)
T ss_pred             -H----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee-----------ccHHHHHHHHHHHH-HHHHHhh
Confidence             0    123445666666655543211 1111245677788777665           45666666555444 433221 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC---
Q 013375          317 -----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG----GS-NLKGWLLMARILSAQKRYEDAETILNAALDQTG---  383 (444)
Q Consensus       317 -----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~-~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P---  383 (444)
                           -.++-|||.++.-.|+++.|+++|++++.+--    .- .+..-+.||..|.-..++++|+.+..+=+.+..   
T Consensus       230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~  309 (639)
T KOG1130|consen  230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE  309 (639)
T ss_pred             hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 35788999999999999999999999876532    11 024567799999999999999999988775542   


Q ss_pred             -CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013375          384 -KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS  426 (444)
Q Consensus       384 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  426 (444)
                       ......++|.+|..+..+|..+.|+...+..+++.....+++|
T Consensus       310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sg  353 (639)
T KOG1130|consen  310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSG  353 (639)
T ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcch
Confidence             1134678899999999999999999999999999888777765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=3.1e-08  Score=96.06  Aligned_cols=262  Identities=11%  Similarity=0.017  Sum_probs=196.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH---------HHHHHHHH-HH
Q 013375          137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE---------RYHILALC-YY  206 (444)
Q Consensus       137 ~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~-l~  206 (444)
                      -++.+|..-...-++..++.+|.|.++|...-......|+.+.-.+.|++|+.--|.-.+         .|.+++.- -+
T Consensus       298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl  377 (677)
T KOG1915|consen  298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL  377 (677)
T ss_pred             hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            355555433222346677899999999999999999999999999999999998887543         34444432 24


Q ss_pred             HCCCchHHHHHHHHhhcCCCCCC----ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhh
Q 013375          207 GAGEDLVALNLLRTLLSGSEDPK----CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS  282 (444)
Q Consensus       207 ~~g~~~~A~~~~~~al~~~~~P~----~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~  282 (444)
                      ...+.+.+.++|+.||  ++-|.    ....+++.+....++ .+...|...+-.+|-..|.+.   .-.+|.-+..   
T Consensus       378 e~ed~ertr~vyq~~l--~lIPHkkFtFaKiWlmyA~feIRq-~~l~~ARkiLG~AIG~cPK~K---lFk~YIelEl---  448 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACL--DLIPHKKFTFAKIWLMYAQFEIRQ-LNLTGARKILGNAIGKCPKDK---LFKGYIELEL---  448 (677)
T ss_pred             HhhhHHHHHHHHHHHH--hhcCcccchHHHHHHHHHHHHHHH-cccHHHHHHHHHHhccCCchh---HHHHHHHHHH---
Confidence            5789999999999999  88886    344566555555443 467788888888888766542   1233333332   


Q ss_pred             hhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-ChHHHHHHHHH
Q 013375          283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARI  361 (444)
Q Consensus       283 ~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~la~~  361 (444)
                                 +.+++|.....|++-+ +-.|.|-.+|...|-.-..+|+.+.|...|.-|+.-..-+ |...|-..-..
T Consensus       449 -----------qL~efDRcRkLYEkfl-e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF  516 (677)
T KOG1915|consen  449 -----------QLREFDRCRKLYEKFL-EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF  516 (677)
T ss_pred             -----------HHhhHHHHHHHHHHHH-hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence                       3467899999999999 9999999999999999999999999999999998855443 22345555566


Q ss_pred             HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH-----HhC-----------CHHHHHHHHHHHHHHHHhhh
Q 013375          362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL-----VQG-----------QLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       362 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~l~~~~~  422 (444)
                      -...|.++.|.+.|++.|+..+   +..+|...|....     +.|           ....|...|++|.....+..
T Consensus       517 Ei~~~E~ekaR~LYerlL~rt~---h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~  590 (677)
T KOG1915|consen  517 EIEEGEFEKARALYERLLDRTQ---HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST  590 (677)
T ss_pred             hhhcchHHHHHHHHHHHHHhcc---cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence            6778999999999999999988   5567877777665     455           56678888888876665443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.33  E-value=2e-11  Score=120.32  Aligned_cols=103  Identities=11%  Similarity=0.061  Sum_probs=97.4

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .+++++|+..|++++ +++|+++.+++++|.++..+|++++|+..+++++.++|++ ..+|+.+|.++..+|+|++|+..
T Consensus        15 ~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~lg~~~eA~~~   92 (356)
T PLN03088         15 DDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKLEEYQTAKAA   92 (356)
T ss_pred             cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCCHHHHHHH
Confidence            468999999999999 9999999999999999999999999999999999999999 59999999999999999999999


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~~~  401 (444)
                      |++++.++|  ++..+...++.+...+
T Consensus        93 ~~~al~l~P--~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         93 LEKGASLAP--GDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence            999999999  8888888888776655

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.30  E-value=1.2e-08  Score=97.27  Aligned_cols=267  Identities=14%  Similarity=-0.015  Sum_probs=193.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCCCc
Q 013375          134 PRNNIEEAILLLMILLRKVALKRIEWDPS-ILDHLSFAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYGAGED  211 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~-~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~g~~  211 (444)
                      ..|+|.+|..++.    + . +...+.|. .|..-+.+-.+.|+++.|-.++.++-+..++ ........+.++...|++
T Consensus        96 ~eG~~~qAEkl~~----r-n-ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~  169 (400)
T COG3071          96 FEGDFQQAEKLLR----R-N-AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY  169 (400)
T ss_pred             hcCcHHHHHHHHH----H-h-hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence            4789999988752    2 1 22334444 4444467888899999999999999998444 456777889999999999


Q ss_pred             hHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc---hhhhHHHHHh-----------
Q 013375          212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD---QMESTANCLL-----------  277 (444)
Q Consensus       212 ~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~---~~~~~a~~~l-----------  277 (444)
                      +.|..-..+++  ...|.++.+......++ ...|.+.+......+.-+.---+++   .+...++..+           
T Consensus       170 ~aA~~~v~~ll--~~~pr~~~vlrLa~r~y-~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~  246 (400)
T COG3071         170 PAARENVDQLL--EMTPRHPEVLRLALRAY-IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE  246 (400)
T ss_pred             hhHHHHHHHHH--HhCcCChHHHHHHHHHH-HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence            99999999999  89999999987666654 5578887777776655442111111   1111222210           


Q ss_pred             h--hhhhhhhhhhh----------chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375          278 G--ISLSAQSKVAI----------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK  345 (444)
Q Consensus       278 g--~~~~~~~~~~~----------~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  345 (444)
                      |  ..+..+-+...          ....+.|.+++|.+..+.++ +..-|.- ..-.++  ..+-++.+.=++..++.++
T Consensus       247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHH
Confidence            0  01111100000          01245788999999999999 5544433 222222  2345888999999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      ..|++| ..+..||..+.+.+.+.+|..+++.|++..|   +..-+..+|.++.++|+..+|.+.+++++.+
T Consensus       323 ~h~~~p-~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         323 QHPEDP-LLLSTLGRLALKNKLWGKASEALEAALKLRP---SASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hCCCCh-hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999997 9999999999999999999999999999999   5566888999999999999999999999943

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.30  E-value=4.8e-10  Score=109.34  Aligned_cols=137  Identities=21%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                      |....++|..+..++..|++++|++.++..+  +..|+|+..+-..+.++.. .|+.                       
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~--~~~P~N~~~~~~~~~i~~~-~nk~-----------------------  356 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLI--AAQPDNPYYLELAGDILLE-ANKA-----------------------  356 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-cCCh-----------------------
Confidence            8899999999999999999999999999999  8999999877666666543 3444                       


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                                                 .+|++.+++++ .++|+.+-.+.++|.+|.+.|++.+|+..+++.+.-+|+++
T Consensus       357 ---------------------------~~A~e~~~kal-~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         357 ---------------------------KEAIERLKKAL-ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             ---------------------------HHHHHHHHHHH-hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence                                       45555555555 55555555555555555555555555555555555555553


Q ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          352 LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                       ..|..||..+..+|+-.+|...+........
T Consensus       409 -~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G  439 (484)
T COG4783         409 -NGWDLLAQAYAELGNRAEALLARAEGYALAG  439 (484)
T ss_pred             -hHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence             5555555555555555555544444444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.30  E-value=1.7e-11  Score=116.31  Aligned_cols=256  Identities=14%  Similarity=0.036  Sum_probs=187.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHCCCchHHHHHHHH------hhcCCCCCCChHHHHH
Q 013375          167 LSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRT------LLSGSEDPKCLPALLI  236 (444)
Q Consensus       167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~g~~~~A~~~~~~------al~~~~~P~~~~a~~~  236 (444)
                      =|.-+++.|+....+..|+.|++..-++.    .+|.+||.+|.-+++|++|++.-..      .+  .-.-....+.-+
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgN  100 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGN  100 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhcccccccc
Confidence            35668889999999999999998876664    4677889999999999999876433      22  111112222333


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhhhhhhhhhhhh--ch-------HHHHhhHHHHHHHHH
Q 013375          237 ASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAI--TD-------FDRATRQAKALQALV  306 (444)
Q Consensus       237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~--~~-------~~~~~~~~eA~~~~~  306 (444)
                      +|.+ +..+|.+++|+.+..+-|.+... .+....++|++++|.+|...|+.-.  ..       .+-...++.|.+.|.
T Consensus       101 LGNt-lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~  179 (639)
T KOG1130|consen  101 LGNT-LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM  179 (639)
T ss_pred             ccch-hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence            4555 35678999999999888775322 2334568999999999998876432  11       122345667777777


Q ss_pred             HHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHH
Q 013375          307 SAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       307 ~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      .-+ ++-.+.      ..++-+||..|+-.|+++.|+..-+.-+.+..++.     -.++.++|.++.-+|+++.|+++|
T Consensus       180 eNL-~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  180 ENL-ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHH-HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence            666 554332      23567999999999999999999998888776531     257889999999999999999999


Q ss_pred             HHHHhhc----CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013375          376 NAALDQT----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS  426 (444)
Q Consensus       376 ~~al~~~----P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  426 (444)
                      .+++.+.    .+..-+...|.+|+.+.-..+++.|+.++.+=|.|.+.-.+-+|
T Consensus       259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG  313 (639)
T KOG1130|consen  259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG  313 (639)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9887543    21123566789999999999999999999999999988776555

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=3.4e-08  Score=98.21  Aligned_cols=348  Identities=14%  Similarity=0.082  Sum_probs=199.5

Q ss_pred             HHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013375           14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC   93 (444)
Q Consensus        14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~   93 (444)
                      |.|+.|++++++.++|...+. .++.        .+             ...+++-+.++.+.|++++|...|+..++-+
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~~~~--------~~-------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-GLDR--------LD-------------DKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-cccc--------cc-------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            567777777777777766655 1111        01             1356677778888999999999999988761


Q ss_pred             CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 013375           94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW-DPSILDHLSFAFS  172 (444)
Q Consensus        94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~-~~~~~~~lg~~l~  172 (444)
                         .++....+..++-..   ...                     -++- +     .+ .....|+ +.+.+++.+-++.
T Consensus       141 ---~dd~d~~~r~nl~a~---~a~---------------------l~~~-~-----~q-~v~~v~e~syel~yN~Ac~~i  186 (652)
T KOG2376|consen  141 ---SDDQDEERRANLLAV---AAA---------------------LQVQ-L-----LQ-SVPEVPEDSYELLYNTACILI  186 (652)
T ss_pred             ---CchHHHHHHHHHHHH---HHh---------------------hhHH-H-----HH-hccCCCcchHHHHHHHHHHHH
Confidence               212111111111100   000                     0000 0     01 1122343 5568889999999


Q ss_pred             hcCCHHHHHHHHHhhcCC--------CCCC-------HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH--
Q 013375          173 IAGDLSSLATQIEELLPG--------IINR-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL--  235 (444)
Q Consensus       173 ~~g~~~~A~~~~~~al~~--------~p~~-------~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~--  235 (444)
                      ..|+|.+|++.+++++++        +-+.       .....+|+.++..+|+.++|...|...+  +.+|.+.....  
T Consensus       187 ~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i--~~~~~D~~~~Av~  264 (652)
T KOG2376|consen  187 ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII--KRNPADEPSLAVA  264 (652)
T ss_pred             hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HhcCCCchHHHHH
Confidence            999999999999999322        2111       2356778999999999999999999999  77876653221  


Q ss_pred             -HHHHHHhcCCCCHH-HHHHHHHHHHHHcCCCcch-----hhhHHHHHhhhhhhh-----hhhhhh------c-----h-
Q 013375          236 -IASKICGEYPDLAE-EGATFASRALECLGDGCDQ-----MESTANCLLGISLSA-----QSKVAI------T-----D-  291 (444)
Q Consensus       236 -~~~~~~~~~~~~~~-eA~~~~~~al~~~~~~~~~-----~~~~a~~~lg~~~~~-----~~~~~~------~-----~-  291 (444)
                       +.....-...+-++ .++..++.....++.-...     -....+.+.+.....     +.+...      .     + 
T Consensus       265 ~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~  344 (652)
T KOG2376|consen  265 VNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPI  344 (652)
T ss_pred             hcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHH
Confidence             11111111111111 1111111111101000000     001112222221111     111000      0     0 


Q ss_pred             ------HHHHhhHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhcCCCChHHHH
Q 013375          292 ------FDRATRQAKALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAK--------MLLKLEGGSNLKGWL  356 (444)
Q Consensus       292 ------~~~~~~~~eA~~~~~~al~~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~--------~al~l~P~~~~~~~~  356 (444)
                            ..+...+.+|++.+.... +.+|.+ ..+.+.++.....+|+++.|++.+.        ...+..-. | ..-.
T Consensus       345 ll~~~t~~~~~~~~ka~e~L~~~~-~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~-P-~~V~  421 (652)
T KOG2376|consen  345 LLQEATKVREKKHKKAIELLLQFA-DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL-P-GTVG  421 (652)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC-h-hHHH
Confidence                  012236789999999999 999999 6788889999999999999999999        44443322 2 2222


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHH-------hhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          357 LMARILSAQKRYEDAETILNAAL-------DQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       357 ~la~~l~~~g~~~eA~~~~~~al-------~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      .+-..+..-+.-+-|.+.+.+|+       .-.+  .-...+.-.+....+.|+.++|...+++++...|...++
T Consensus       422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~--~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~  494 (652)
T KOG2376|consen  422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI--ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL  494 (652)
T ss_pred             HHHHHHHhccCCccHHHHHHHHHHHHHHhcccch--HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence            33334444555444555555555       3333  445566777888888899999999999999988776654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.27  E-value=6.7e-11  Score=97.17  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRT  393 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~  393 (444)
                      +++++.+|..+.++|++++|++.|++++..+|+++  ..+++.+|.++...|++++|+..|++++...|+. ....+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            56789999999999999999999999999998762  2688889999999999999999999999988821 12678899


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013375          394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS  426 (444)
Q Consensus       394 la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  426 (444)
                      +|.++..+|++++|+..|+++++..|+...+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999887665443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=6.9e-11  Score=109.49  Aligned_cols=130  Identities=19%  Similarity=0.128  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc---CHHHHHHH
Q 013375          298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK---RYEDAETI  374 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g---~~~eA~~~  374 (444)
                      .++-+.-++..+ +.||+|++-|..||.+|..+|+++.|...|.+|+++.|+++ +.+..+|.+++.+.   ...++...
T Consensus       138 ~~~l~a~Le~~L-~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         138 MEALIARLETHL-QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-EILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCcccHHHHHH
Confidence            567788899999 99999999999999999999999999999999999999995 99999999998774   46689999


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh-hccCccch
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK-TFSSDKRF  431 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~~  431 (444)
                      +++++.++|  ++..+.+.+|..+.++|++.+|...|+..++..|-+.. .+.++.-+
T Consensus       216 l~~al~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i  271 (287)
T COG4235         216 LRQALALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI  271 (287)
T ss_pred             HHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            999999999  99999999999999999999999999999998876655 44444444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.26  E-value=1.3e-10  Score=117.76  Aligned_cols=195  Identities=15%  Similarity=0.056  Sum_probs=166.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK  239 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~  239 (444)
                      -+..|......|...|+..+|.....+-++ .|+++-.|..||.+....-=|++|....+..-        ..|....+.
T Consensus       423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s--------arA~r~~~~  493 (777)
T KOG1128|consen  423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS--------ARAQRSLAL  493 (777)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh--------HHHHHhhcc
Confidence            355677888899999999999999999999 78888889889888888777777777766644        224444444


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013375          240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI  319 (444)
Q Consensus       240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a  319 (444)
                      ..+. .++++++..++++.+++.|-     ....|+.+|.+..+.           ++...|.++|..++ .++|++.++
T Consensus       494 ~~~~-~~~fs~~~~hle~sl~~npl-----q~~~wf~~G~~ALql-----------ek~q~av~aF~rcv-tL~Pd~~ea  555 (777)
T KOG1128|consen  494 LILS-NKDFSEADKHLERSLEINPL-----QLGTWFGLGCAALQL-----------EKEQAAVKAFHRCV-TLEPDNAEA  555 (777)
T ss_pred             cccc-chhHHHHHHHHHHHhhcCcc-----chhHHHhccHHHHHH-----------hhhHHHHHHHHHHh-hcCCCchhh
Confidence            4343 57899999999999996443     357899999998764           56899999999999 999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      |+|++.+|.+.|+-.+|-..+++|++-+-++ +..|.|.-.+..+.|.+++|+.+|.+.+...
T Consensus       556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999777 6999999999999999999999999998764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=1.1e-09  Score=98.33  Aligned_cols=184  Identities=15%  Similarity=0.031  Sum_probs=148.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013375          189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ  268 (444)
Q Consensus       189 ~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~  268 (444)
                      .+.|+....+-+...+.+..|+.+-|..++++.-  ...|+...+--+.| +.+.-.|.+++|+++|+..++..|.+.- 
T Consensus        46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~--~~fp~S~RV~~lka-m~lEa~~~~~~A~e~y~~lL~ddpt~~v-  121 (289)
T KOG3060|consen   46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR--DRFPGSKRVGKLKA-MLLEATGNYKEAIEYYESLLEDDPTDTV-  121 (289)
T ss_pred             ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HhCCCChhHHHHHH-HHHHHhhchhhHHHHHHHHhccCcchhH-
Confidence            4556777778888999999999999999999988  66699887665443 4467789999999999999995443321 


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375          269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG  348 (444)
Q Consensus       269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  348 (444)
                          .+----.+..           ..|+.-+||+.+..-+ +.-|.|+++|..|+.+|...|++++|.-++++.+=++|
T Consensus       122 ----~~KRKlAilk-----------a~GK~l~aIk~ln~YL-~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  122 ----IRKRKLAILK-----------AQGKNLEAIKELNEYL-DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             ----HHHHHHHHHH-----------HcCCcHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence                1111111111           1355669999999999 99999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          349 GSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       349 ~~~~~~~~~la~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      -++ ..+..+|.+++-+|   ++.-|.++|.++++++|  .+..+++.+.
T Consensus       186 ~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ral~GI~  232 (289)
T KOG3060|consen  186 FNP-LYFQRLAEVLYTQGGAENLELARKYYERALKLNP--KNLRALFGIY  232 (289)
T ss_pred             CcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh--HhHHHHHHHH
Confidence            996 88899999988886   56779999999999999  7877776543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=6.8e-09  Score=97.27  Aligned_cols=325  Identities=17%  Similarity=0.097  Sum_probs=208.9

Q ss_pred             HHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013375           14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC   93 (444)
Q Consensus        14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~   93 (444)
                      ...|-|++.+|+|++|...|..+-+.      ++.|.      +       ..-.++-+++-.|.+.+|...-.++-+. 
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~------e-------l~vnLAcc~FyLg~Y~eA~~~~~ka~k~-  120 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNK------DDAPA------E-------LGVNLACCKFYLGQYIEAKSIAEKAPKT-  120 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhcc------CCCCc------c-------cchhHHHHHHHHHHHHHHHHHHhhCCCC-
Confidence            45788999999999999999876642      11121      1       2234456777889999999888877554 


Q ss_pred             CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 013375           94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI  173 (444)
Q Consensus        94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~  173 (444)
                          | .-.++...++.-                       .++ ++-+..+...+.+        ..+-...|+.++..
T Consensus       121 ----p-L~~RLlfhlahk-----------------------lnd-Ek~~~~fh~~LqD--------~~EdqLSLAsvhYm  163 (557)
T KOG3785|consen  121 ----P-LCIRLLFHLAHK-----------------------LND-EKRILTFHSSLQD--------TLEDQLSLASVHYM  163 (557)
T ss_pred             ----h-HHHHHHHHHHHH-----------------------hCc-HHHHHHHHHHHhh--------hHHHHHhHHHHHHH
Confidence                1 111222222211                       111 1222222111111        11223456667777


Q ss_pred             cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcC-CCCHHHHH
Q 013375          174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY-PDLAEEGA  252 (444)
Q Consensus       174 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~-~~~~~eA~  252 (444)
                      .-.|++|++.|.+++.-+|+....-..+|.+|+++.=|+-+..++.--+  +..|+.+-+..+.+...++. .|+..++.
T Consensus       164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL--~q~pdStiA~NLkacn~fRl~ngr~ae~E  241 (557)
T KOG3785|consen  164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL--RQFPDSTIAKNLKACNLFRLINGRTAEDE  241 (557)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH--HhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence            7789999999999999999999999999999999999999999999999  88999998887766554432 23322221


Q ss_pred             ----------------HHH----------HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375          253 ----------------TFA----------SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV  306 (444)
Q Consensus       253 ----------------~~~----------~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~  306 (444)
                                      ...          +.+++.+|+-- .....|..+|.+-|..           +++..+|+...+
T Consensus       242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~-~~IPEARlNL~iYyL~-----------q~dVqeA~~L~K  309 (557)
T KOG3785|consen  242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM-KHIPEARLNLIIYYLN-----------QNDVQEAISLCK  309 (557)
T ss_pred             HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH-hhChHhhhhheeeecc-----------cccHHHHHHHHh
Confidence                            111          11222222210 0112344444444433           466788888877


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML---LKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---l~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                          .++|..|.-+.--|.+.+..|+-....+..+-|   +.+-..+.     ..+...++.+++-..+|++-+.++...
T Consensus       310 ----dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi  385 (557)
T KOG3785|consen  310 ----DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI  385 (557)
T ss_pred             ----hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                889999999999999999888765544444433   33333221     244566777777788888888877776


Q ss_pred             HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      -.-+-  ++-...+++|.+....|.+.+|.+.+-++-
T Consensus       386 ~sYF~--NdD~Fn~N~AQAk~atgny~eaEelf~~is  420 (557)
T KOG3785|consen  386 ESYFT--NDDDFNLNLAQAKLATGNYVEAEELFIRIS  420 (557)
T ss_pred             HHHhc--CcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence            66666  455667788888888888888888776654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=2.2e-07  Score=90.32  Aligned_cols=368  Identities=11%  Similarity=-0.019  Sum_probs=189.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013375            3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET   82 (444)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA   82 (444)
                      ||.=|+.+..|-.=|.-=+.++.+.-|...++++|+..        ..+..           .+..-+..-++.....-|
T Consensus        66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--------~r~it-----------LWlkYae~Emknk~vNhA  126 (677)
T KOG1915|consen   66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD--------YRNIT-----------LWLKYAEFEMKNKQVNHA  126 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--------cccch-----------HHHHHHHHHHhhhhHhHH
Confidence            56667888888877877778888888888888888652        11111           112222333445555555


Q ss_pred             HHHHHHHhCcCCCCChHHHHHHHHHHH--HHHhhhcCCC-----------CCCcccc-ccCccccCCCcHHHHHHHHHHH
Q 013375           83 IMSYRRALLPCWNLDAETTAKLQKEFA--IFLLYCGGET-----------CPPNLRS-QMGSSFVPRNNIEEAILLLMIL  148 (444)
Q Consensus        83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a--~~ll~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~eAi~~l~~~  148 (444)
                      -.++++|+++    =|...+.+ .+..  +-.+ +....           .|+.... .....=...+.++.|...+   
T Consensus       127 RNv~dRAvt~----lPRVdqlW-yKY~ymEE~L-gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY---  197 (677)
T KOG1915|consen  127 RNVWDRAVTI----LPRVDQLW-YKYIYMEEML-GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY---  197 (677)
T ss_pred             HHHHHHHHHh----cchHHHHH-HHHHHHHHHh-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH---
Confidence            5555555554    22221111 0000  0000 00000           0111000 0000001123455555443   


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHCCCchHHHHHHHHhhcC-
Q 013375          149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSG-  224 (444)
Q Consensus       149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~g~~~~A~~~~~~al~~-  224 (444)
                        +...--+| +...|...+..-.+.|+...|...|++|+..-.++.   ......|..-..+..++.|..+|+-||.+ 
T Consensus       198 --erfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~  274 (677)
T KOG1915|consen  198 --ERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI  274 (677)
T ss_pred             --HHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              33333445 566788888888889999999999999987644432   23334455555666777777777777721 


Q ss_pred             -----------------------------------------CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013375          225 -----------------------------------------SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG  263 (444)
Q Consensus       225 -----------------------------------------~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  263 (444)
                                                               +-+|-|.++++....+ ....|+.+.-...|++||...|
T Consensus       275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL-~e~~g~~~~Ire~yErAIanvp  353 (677)
T KOG1915|consen  275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRL-EESVGDKDRIRETYERAIANVP  353 (677)
T ss_pred             CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHH-HHhcCCHHHHHHHHHHHHccCC
Confidence                                                     3344444444433332 2345777788888889988777


Q ss_pred             CCcchhhhHHHHHhhh--hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 013375          264 DGCDQMESTANCLLGI--SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAEQRKLNAAH  337 (444)
Q Consensus       264 ~~~~~~~~~a~~~lg~--~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~----~~a~~~lg~~~~~~g~~~~A~  337 (444)
                      |..+.....-|.+|=+  ++...        ....+.+.+.++|+.++ .+-|+.    +.+|...|....++.++..|.
T Consensus       354 p~~ekr~W~RYIYLWinYalyeE--------le~ed~ertr~vyq~~l-~lIPHkkFtFaKiWlmyA~feIRq~~l~~AR  424 (677)
T KOG1915|consen  354 PASEKRYWRRYIYLWINYALYEE--------LEAEDVERTRQVYQACL-DLIPHKKFTFAKIWLMYAQFEIRQLNLTGAR  424 (677)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHH-hhcCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence            7544322222333322  22111        11345667777777777 777754    334444455555555555555


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       338 ~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      +.+-.|+-..|.+  ..+-..-.+-..+++++.....|++-|+-.|  .+-.+|...|.+...+|+.+.|...|+-|+
T Consensus       425 kiLG~AIG~cPK~--KlFk~YIelElqL~efDRcRkLYEkfle~~P--e~c~~W~kyaElE~~LgdtdRaRaifelAi  498 (677)
T KOG1915|consen  425 KILGNAIGKCPKD--KLFKGYIELELQLREFDRCRKLYEKFLEFSP--ENCYAWSKYAELETSLGDTDRARAIFELAI  498 (677)
T ss_pred             HHHHHHhccCCch--hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh--HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            5555555555543  3333333333444455555555555555555  444445555555555555554444444444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.24  E-value=4.3e-08  Score=93.53  Aligned_cols=294  Identities=16%  Similarity=0.047  Sum_probs=190.8

Q ss_pred             HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375           12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL   91 (444)
Q Consensus        12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~   91 (444)
                      ...+.|+.-...|+|.+|++...+.-+..|+      |             .-++...+....+.|+.+.|=.+..++-+
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~------p-------------~l~~l~aA~AA~qrgd~~~an~yL~eaae  146 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ------P-------------VLAYLLAAEAAQQRGDEDRANRYLAEAAE  146 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc------h-------------HHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence            3445666666678888888876653322111      1             12444555667788888888888888888


Q ss_pred             cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375           92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF  171 (444)
Q Consensus        92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l  171 (444)
                      .++  ++...  .....+..                    ...++++..|...+     +..+...|.++.+......+|
T Consensus       147 ~~~--~~~l~--v~ltrarl--------------------ll~~~d~~aA~~~v-----~~ll~~~pr~~~vlrLa~r~y  197 (400)
T COG3071         147 LAG--DDTLA--VELTRARL--------------------LLNRRDYPAARENV-----DQLLEMTPRHPEVLRLALRAY  197 (400)
T ss_pred             cCC--CchHH--HHHHHHHH--------------------HHhCCCchhHHHHH-----HHHHHhCcCChHHHHHHHHHH
Confidence            721  21111  11122222                    22355666666543     456778899999988888999


Q ss_pred             HhcCCHHHHHHHHHhhcCCCCCCHHH---HHHHHH--HHHHCCCchHHHH---HHH---HhhcCCCCCCChHHHHHHHHH
Q 013375          172 SIAGDLSSLATQIEELLPGIINRKER---YHILAL--CYYGAGEDLVALN---LLR---TLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~--~l~~~g~~~~A~~---~~~---~al~~~~~P~~~~a~~~~~~~  240 (444)
                      ...|++.+....+.+.-+..--+.+-   +-+-+.  ++.+.++-+.+..   +.+   +.+  +-+|.   ..... ..
T Consensus       198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~---l~~~~-a~  271 (400)
T COG3071         198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPE---LVVAY-AE  271 (400)
T ss_pred             HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChh---HHHHH-HH
Confidence            99999988887776665543222221   111111  1222222222222   111   122  22332   22211 22


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                      .+...|..++|.+..+.+++..-+.      ......+..             +.++...=++..++.+ +.+|++|..+
T Consensus       272 ~li~l~~~~~A~~~i~~~Lk~~~D~------~L~~~~~~l-------------~~~d~~~l~k~~e~~l-~~h~~~p~L~  331 (400)
T COG3071         272 RLIRLGDHDEAQEIIEDALKRQWDP------RLCRLIPRL-------------RPGDPEPLIKAAEKWL-KQHPEDPLLL  331 (400)
T ss_pred             HHHHcCChHHHHHHHHHHHHhccCh------hHHHHHhhc-------------CCCCchHHHHHHHHHH-HhCCCChhHH
Confidence            3456789999999999998853211      111222221             2345677888999999 9999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~  381 (444)
                      ..||..+.+.+.+.+|..+|+.|++..|+.  ..|..+|.++.++|+..+|-+..+.++..
T Consensus       332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         332 STLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999983  88999999999999999999999999854

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.23  E-value=9.9e-11  Score=115.35  Aligned_cols=102  Identities=10%  Similarity=-0.020  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      +...|..+...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..+++++.++|  ++..+++++|.++.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~   81 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHH
Confidence            5567888899999999999999999999999 59999999999999999999999999999999  89999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          400 VQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       400 ~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      .+|++++|+..|++++++.|++...
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~~~  106 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDSRF  106 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999999998876654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.23  E-value=4.4e-11  Score=88.57  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhcC
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTG  383 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g-~~~eA~~~~~~al~~~P  383 (444)
                      +++.+|+.+|.++...|++++|+..|+++++++|++ ..+|+++|.++..+| ++++|+..++++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            367788888888888888888888888888888888 588888888888888 68888888888888887

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.22  E-value=3.2e-10  Score=108.16  Aligned_cols=254  Identities=15%  Similarity=0.036  Sum_probs=174.4

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375          135 RNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV  213 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~  213 (444)
                      .|+|..++...     + +...+| ........+.+++..+|+++..+.....   .++....+...++..+...++.+.
T Consensus        14 ~G~Y~~~i~e~-----~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen   14 LGNYQQCINEA-----S-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             TT-HHHHCHHH-----H-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             hhhHHHHHHHh-----h-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence            57788887532     1 112222 2334566788899999999887765543   224455666777877776677888


Q ss_pred             HHHHHHHhhcCCCCC-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchH
Q 013375          214 ALNLLRTLLSGSEDP-KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF  292 (444)
Q Consensus       214 A~~~~~~al~~~~~P-~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~  292 (444)
                      ++..++..+. ...+ .++.... .+...+...|++++|+..+.+.     .+     ..+....-.++..         
T Consensus        85 ~l~~l~~~~~-~~~~~~~~~~~~-~~A~i~~~~~~~~~AL~~l~~~-----~~-----lE~~al~Vqi~L~---------  143 (290)
T PF04733_consen   85 ALEELKELLA-DQAGESNEIVQL-LAATILFHEGDYEEALKLLHKG-----GS-----LELLALAVQILLK---------  143 (290)
T ss_dssp             HHHHHHHCCC-TS---CHHHHHH-HHHHHHCCCCHHHHHHCCCTTT-----TC-----HHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHH-hccccccHHHHH-HHHHHHHHcCCHHHHHHHHHcc-----Cc-----ccHHHHHHHHHHH---------
Confidence            8888888773 2222 3433333 4444556688888888776543     11     1233333334433         


Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013375          293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED  370 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e  370 (444)
                        .++.+.|.+.++..- +.+.|+.-+....+|+....|  ++.+|...|+......|.. ...++.++.++..+|+|++
T Consensus       144 --~~R~dlA~k~l~~~~-~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t-~~~lng~A~~~l~~~~~~e  219 (290)
T PF04733_consen  144 --MNRPDLAEKELKNMQ-QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST-PKLLNGLAVCHLQLGHYEE  219 (290)
T ss_dssp             --TT-HHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S-HHHHHHHHHHHHHCT-HHH
T ss_pred             --cCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCHHH
Confidence              467899999999999 999888877777888887776  6999999999987776676 4889999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHhhhhh
Q 013375          371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG-AVETYTHLLAALQVQTKT  424 (444)
Q Consensus       371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~~~~~~~  424 (444)
                      |...+.+|+..+|  .++..+.++..+...+|+..+ +.+...++....|+|.=+
T Consensus       220 Ae~~L~~al~~~~--~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  220 AEELLEEALEKDP--NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHCCC-C--CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHhcc--CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            9999999999999  899999999999999999944 555666666677766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=2.3e-09  Score=106.36  Aligned_cols=220  Identities=17%  Similarity=0.094  Sum_probs=160.3

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE  210 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~  210 (444)
                      .+...++|++|+...     ..++...|+++++....-.++...++|++|+..-+.-....-.+. ..|..|-|++++++
T Consensus        21 ~~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   21 RHGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNK   94 (652)
T ss_pred             HhccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHccc
Confidence            455678999998863     667888999999999999999999999999854443332222221 12688999999999


Q ss_pred             chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013375          211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT  290 (444)
Q Consensus       211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~  290 (444)
                      .++|+..++ .+    ++.+..+....+.++|+ .+++++|.+.|+..++-..++.+   ..-..++-.+          
T Consensus        95 ~Dealk~~~-~~----~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d---~~~r~nl~a~----------  155 (652)
T KOG2376|consen   95 LDEALKTLK-GL----DRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQD---EERRANLLAV----------  155 (652)
T ss_pred             HHHHHHHHh-cc----cccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHH---HHHHHHHHHH----------
Confidence            999999999 33    55555566667888876 68999999999999883222211   1111111100          


Q ss_pred             hHHHHhhHHHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC---------hHH
Q 013375          291 DFDRATRQAKALQA-LVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN---------LKG  354 (444)
Q Consensus       291 ~~~~~~~~~eA~~~-~~~al~~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~---------~~~  354 (444)
                              ..+... ..+.+ ...|. +.+.+||.+.++...|+|.+|++.+++|+++.     -++.         ..+
T Consensus       156 --------~a~l~~~~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I  226 (652)
T KOG2376|consen  156 --------AAALQVQLLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI  226 (652)
T ss_pred             --------HHhhhHHHHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence                    111111 45555 56666 67899999999999999999999999994322     1110         246


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013375          355 WLLMARILSAQKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       355 ~~~la~~l~~~g~~~eA~~~~~~al~~~P~  384 (444)
                      ...|+-++..+|+.+||.+.|...+..+|.
T Consensus       227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~  256 (652)
T KOG2376|consen  227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPA  256 (652)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence            778999999999999999999999998883

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.21  E-value=8.5e-09  Score=114.55  Aligned_cols=289  Identities=12%  Similarity=-0.074  Sum_probs=178.7

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      .+.....|.++...|++++|...++++++..        +...      ......+...+|.++...|++++|...++++
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~a  517 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAEL--------PLTW------YYSRIVATSVLGEVHHCKGELARALAMMQQT  517 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CCcc------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455568889999999999999999988642        1110      0011235567888899999999999999999


Q ss_pred             hCcCCCC-ChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhh-C---CCCHHHH
Q 013375           90 LLPCWNL-DAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKR-I---EWDPSIL  164 (444)
Q Consensus        90 L~~~~~~-~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~-~---p~~~~~~  164 (444)
                      +...... ++.........++.                    ++..+|++++|...+..+..- .-.. .   |....++
T Consensus       518 l~~~~~~g~~~~~~~~~~~la~--------------------~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~  576 (903)
T PRK04841        518 EQMARQHDVYHYALWSLLQQSE--------------------ILFAQGFLQAAYETQEKAFQL-IEEQHLEQLPMHEFLL  576 (903)
T ss_pred             HHHHhhhcchHHHHHHHHHHHH--------------------HHHHCCCHHHHHHHHHHHHHH-HHHhccccccHHHHHH
Confidence            9761111 11111111122222                    344578899999887544221 1111 1   1123346


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcCCCC-----CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh---HHHHH
Q 013375          165 DHLSFAFSIAGDLSSLATQIEELLPGII-----NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLI  236 (444)
Q Consensus       165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~---~a~~~  236 (444)
                      ..+|.++...|++++|...+++++....     ....++..+|.++...|++++|...+.+++  .+.+...   .....
T Consensus       577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~--~~~~~~~~~~~~~~~  654 (903)
T PRK04841        577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE--NLLGNGRYHSDWIAN  654 (903)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccHhHhhH
Confidence            6789999999999999999999987532     235667779999999999999999999998  5433321   11000


Q ss_pred             HH--HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375          237 AS--KICGEYPDLAEEGATFASRALECLGDGCDQME---STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS  311 (444)
Q Consensus       237 ~~--~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~  311 (444)
                      ..  ........   .......+.+...........   ...+..++.++           ...|++++|+..+++++ .
T Consensus       655 ~~~~~~~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~-----------~~~g~~~~A~~~l~~al-~  719 (903)
T PRK04841        655 ADKVRLIYWQMT---GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ-----------ILLGQFDEAEIILEELN-E  719 (903)
T ss_pred             HHHHHHHHHHHC---CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-H
Confidence            00  00000000   011111222221111100000   00012222222           35788999999999999 7


Q ss_pred             hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          312 TN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       312 ~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..      +....++..+|.++...|+.++|...+.+|+++....
T Consensus       720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            52      2234578899999999999999999999999998764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.20  E-value=3.5e-10  Score=107.85  Aligned_cols=257  Identities=13%  Similarity=0.037  Sum_probs=162.7

Q ss_pred             HHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH
Q 013375           73 WKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV  152 (444)
Q Consensus        73 ~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~  152 (444)
                      ++-.|++..++..++ ....    ++.....     ...++.               ..++.+|+++..+..+       
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~----~~~~~~e-----~~~~~~---------------Rs~iAlg~~~~vl~ei-------   58 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSF----SPENKLE-----RDFYQY---------------RSYIALGQYDSVLSEI-------   58 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTS----TCHHHHH-----HHHHHH---------------HHHHHTT-HHHHHHHS-------
T ss_pred             HHHhhhHHHHHHHhh-ccCC----CchhHHH-----HHHHHH---------------HHHHHcCChhHHHHHh-------
Confidence            466899999998887 2222    3332111     111111               1234456666554321       


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                       ....+....+...++..+...++.+.++..++..+.-...  ++-...--|.++...|++++|++.+.+.       ++
T Consensus        59 -~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~  130 (290)
T PF04733_consen   59 -KKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GS  130 (290)
T ss_dssp             --TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TC
T ss_pred             -ccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------Cc
Confidence             1222333445566666666656777888888776654433  4444555578888889888888766543       34


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013375          231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA  309 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al  309 (444)
                      .+.......+++. .+|++.|.+.++++-+. .++. ....+.+|..+..     |         .+.+.+|.-.|++..
T Consensus       131 lE~~al~Vqi~L~-~~R~dlA~k~l~~~~~~-~eD~~l~qLa~awv~l~~-----g---------~e~~~~A~y~f~El~  194 (290)
T PF04733_consen  131 LELLALAVQILLK-MNRPDLAEKELKNMQQI-DEDSILTQLAEAWVNLAT-----G---------GEKYQDAFYIFEELS  194 (290)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHH-----T---------TTCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH-cCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHh-----C---------chhHHHHHHHHHHHH
Confidence            5555544555544 68999998888887663 3321 1112233333222     1         134789999999988


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH-HHHHHHHHHHHhhcCCCCcH
Q 013375          310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY-EDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       310 ~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~-~eA~~~~~~al~~~P~~~~~  388 (444)
                       ...|.++..++.++.++..+|++++|...+++++..+|+++ .++.++..+...+|+. +.+..++.+....+|  +++
T Consensus       195 -~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~-d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p--~h~  270 (290)
T PF04733_consen  195 -DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP-DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP--NHP  270 (290)
T ss_dssp             -CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH-HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT--TSH
T ss_pred             -hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC--CCh
Confidence             88889999999999999999999999999999999999995 9999999999999998 556678888888899  665


Q ss_pred             H
Q 013375          389 E  389 (444)
Q Consensus       389 ~  389 (444)
                      .
T Consensus       271 ~  271 (290)
T PF04733_consen  271 L  271 (290)
T ss_dssp             H
T ss_pred             H
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.6e-10  Score=105.67  Aligned_cols=124  Identities=22%  Similarity=0.146  Sum_probs=108.0

Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHH
Q 013375          176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFA  255 (444)
Q Consensus       176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~  255 (444)
                      ..+..+.-++.-++.+|++.+-|..||.+|+.+|++..|...|.+|+  ++.|++++.+...+.+.+.+.|.        
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~--rL~g~n~~~~~g~aeaL~~~a~~--------  206 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL--RLAGDNPEILLGLAEALYYQAGQ--------  206 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCC--------
Confidence            35677778899999999999999999999999999999999999999  99999999887666554432211        


Q ss_pred             HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013375          256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA  335 (444)
Q Consensus       256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~  335 (444)
                                                              ....++...|++++ .+||+|..+++.||..+.++|++.+
T Consensus       207 ----------------------------------------~~ta~a~~ll~~al-~~D~~~iral~lLA~~afe~g~~~~  245 (287)
T COG4235         207 ----------------------------------------QMTAKARALLRQAL-ALDPANIRALSLLAFAAFEQGDYAE  245 (287)
T ss_pred             ----------------------------------------cccHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHcccHHH
Confidence                                                    12367889999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCC
Q 013375          336 AHYYAKMLLKLEGGS  350 (444)
Q Consensus       336 A~~~~~~al~l~P~~  350 (444)
                      |+...++.+++.|.+
T Consensus       246 A~~~Wq~lL~~lp~~  260 (287)
T COG4235         246 AAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999999876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.20  E-value=3.6e-10  Score=99.40  Aligned_cols=119  Identities=13%  Similarity=0.007  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHH
Q 013375          298 QAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      +..+...+.+.+ +.++.+  ...++++|.++..+|++++|+..|++++.+.|++.  ..+|.++|.++...|++++|+.
T Consensus        15 ~~~~~~~l~~~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         15 FTIVADILLRIL-PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             cccchhhhhHhc-cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            455666666666 666666  56779999999999999999999999999987742  2589999999999999999999


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHHHH
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKVQL-------VQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~l~~  419 (444)
                      .+++++...|  ++...+.++|.++.       .+|++++|+..|++++.++.
T Consensus        94 ~~~~Al~~~~--~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033         94 YYFQALERNP--FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHHHhCc--CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence            9999999999  88898999999998       88888866666666655544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.19  E-value=8.3e-10  Score=97.53  Aligned_cols=112  Identities=21%  Similarity=0.178  Sum_probs=73.8

Q ss_pred             HHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 013375          259 LECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNA  335 (444)
Q Consensus       259 l~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~  335 (444)
                      ....+.+.....+.+++.+|..+...           |++++|+..|++++ .++|+.   +.+++++|.++...|++++
T Consensus        23 ~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~la~~~~~~g~~~~   90 (172)
T PRK02603         23 LKILPINKKAKEAFVYYRDGMSAQAD-----------GEYAEALENYEEAL-KLEEDPNDRSYILYNMGIIYASNGEHDK   90 (172)
T ss_pred             HHHcccccHhhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHcCCHHH
Confidence            33333333334455667777766543           56777777777777 776653   3577777777777777777


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhhcC
Q 013375          336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKR--------------YEDAETILNAALDQTG  383 (444)
Q Consensus       336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~--------------~~eA~~~~~~al~~~P  383 (444)
                      |+..+++++.++|++ ..++..+|.++..+|+              +++|+.++++++..+|
T Consensus        91 A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603         91 ALEYYHQALELNPKQ-PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence            777777777777777 4777777777777766              4555555555555555

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.19  E-value=5.4e-10  Score=98.72  Aligned_cols=107  Identities=18%  Similarity=0.146  Sum_probs=92.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      |..+.+++++|..+...|++++|+.+|++++++.|+.+  ..++.++|.++...|++++|+.++++++...|  ++...+
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~  109 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSAL  109 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHH
Confidence            45566789999999999999999999999999988742  36899999999999999999999999999999  889999


Q ss_pred             HHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHhhh
Q 013375          392 RTKAKVQLVQGQ--------------LKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       392 ~~la~~~~~~g~--------------~~~A~~~~~~al~l~~~~~  422 (444)
                      ..+|.++...|+              +++|++.+++++.+.|++.
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            999999999887              4667777777777666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.18  E-value=2e-10  Score=88.69  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      +++++|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+.++++++...|  .+..+++.+|.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHH
Confidence            57788888888888888888888888888887 48888888888888888888888888888888  6777888888888


Q ss_pred             HHhCCHHHHHHHHHHHHHHHH
Q 013375          399 LVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~l~~  419 (444)
                      ...|++++|...+++++++.|
T Consensus        79 ~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          79 YKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHhHHHHHHHHHHHHccCC
Confidence            888888888888888877654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.17  E-value=6.1e-10  Score=91.37  Aligned_cols=106  Identities=18%  Similarity=0.069  Sum_probs=92.7

Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG  348 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  348 (444)
                      ..++.+|..+..           .+++++|++.|++++ ..+|++   +.+++.+|.++...|++++|+..|++++..+|
T Consensus         3 ~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLK-----------AGDYADAIQAFQAFL-KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            356667776654           467999999999999 999987   57999999999999999999999999999999


Q ss_pred             CCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          349 GSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       349 ~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      +++  ..++..+|.++..+|++++|+.+++++++..|  ++..+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~  113 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP--GSSAAK  113 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc--CChhHH
Confidence            852  27899999999999999999999999999999  665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.15  E-value=6.7e-10  Score=113.98  Aligned_cols=139  Identities=13%  Similarity=0.014  Sum_probs=115.9

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKM  342 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~  342 (444)
                      +...+..|..+.....        .+.+.+|+.+|++|+ ++||+++.++-.++.++...        .+...+....++
T Consensus       339 Ay~~~lrg~~~~~~~~--------~~~~~~A~~lle~Ai-~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        339 ALTLFYQAHHYLNSGD--------AKSLNKASDLLEEIL-KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             HHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            3445556655543321        245789999999999 99999999999998887654        245677888888


Q ss_pred             HHhh--cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          343 LLKL--EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       343 al~l--~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      ++.+  +|.++ .++..+|.+....|++++|...+++|++++|  + ..+|..+|.++...|++++|++.|++|+.+.|.
T Consensus       410 a~al~~~~~~~-~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        410 IVALPELNVLP-RIYEILAVQALVKGKTDEAYQAINKAIDLEM--S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hhhcccCcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            7775  77775 8899999999999999999999999999999  4 789999999999999999999999999999997


Q ss_pred             hh
Q 013375          421 QT  422 (444)
Q Consensus       421 ~~  422 (444)
                      .+
T Consensus       486 ~p  487 (517)
T PRK10153        486 EN  487 (517)
T ss_pred             Cc
Confidence            54

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.14  E-value=1.5e-09  Score=105.98  Aligned_cols=122  Identities=20%  Similarity=0.022  Sum_probs=115.0

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      +.+.+++|...++..+ ...|+|+-.+-..|.++.+.++..+|.+.+++++.++|+.+ ..+.++|..|.+.|++++|+.
T Consensus       318 ~~~~~d~A~~~l~~L~-~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-~l~~~~a~all~~g~~~eai~  395 (484)
T COG4783         318 LAGQYDEALKLLQPLI-AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-LLQLNLAQALLKGGKPQEAIR  395 (484)
T ss_pred             HhcccchHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhcCChHHHHH
Confidence            3577899999999999 99999999999999999999999999999999999999995 999999999999999999999


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      .+++.+..+|  +++..|..+|..+..+|+..+|...+.+...+.=
T Consensus       396 ~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G  439 (484)
T COG4783         396 ILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEGYALAG  439 (484)
T ss_pred             HHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence            9999999999  9999999999999999999999999888776543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.14  E-value=2.5e-09  Score=91.67  Aligned_cols=116  Identities=22%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHH
Q 013375          296 TRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYED  370 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~e  370 (444)
                      ++...+...+++.+ .-.|++   ..+.+.+|.++...|++++|+..|++++...|+..  ..+++.+|.++..+|+|++
T Consensus        25 ~~~~~~~~~~~~l~-~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   25 GDPAKAEAAAEQLA-KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCHHHHHHHHHHHH-HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            45677788899999 999999   56778899999999999999999999999887752  1478889999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      |+..++.. ...+  -.+.++..+|.++...|++++|...|+++|
T Consensus       104 Al~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  104 ALATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999763 3333  467888999999999999999999999875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=6.6e-10  Score=85.76  Aligned_cols=98  Identities=19%  Similarity=0.152  Sum_probs=89.8

Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL  352 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  352 (444)
                      +++.+|.++..           .+++++|+..+++++ +..|+++.+++.+|.++...|++++|+..+++++.+.|.+. 
T Consensus         2 ~~~~~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-   68 (100)
T cd00189           2 ALLNLGNLYYK-----------LGDYDEALEYYEKAL-ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-   68 (100)
T ss_pred             HHHHHHHHHHH-----------HhcHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-
Confidence            35666666654           367899999999999 99999999999999999999999999999999999999985 


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .++..+|.++...|++++|...+.++++..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            8999999999999999999999999999887

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.13  E-value=5.8e-11  Score=87.90  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCC
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDP  228 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P  228 (444)
                      +++.+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+..+++++  +++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL--KLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH--HHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH--HcCc
Confidence            367889999999999999999999999999999999999999999999999 7999999999999  7887

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.13  E-value=1.9e-09  Score=94.80  Aligned_cols=101  Identities=22%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKL  346 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  346 (444)
                      ...+++.+|.++...           +++++|+..|++++ .+.|++   +.+++++|.++...|++++|+..|++++++
T Consensus        34 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         34 EAFTYYRDGMSAQSE-----------GEYAEALQNYYEAM-RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356788888888654           67999999999999 998774   458999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHH-------HccCHH-------HHHHHHHHHHhhcC
Q 013375          347 EGGSNLKGWLLMARILS-------AQKRYE-------DAETILNAALDQTG  383 (444)
Q Consensus       347 ~P~~~~~~~~~la~~l~-------~~g~~~-------eA~~~~~~al~~~P  383 (444)
                      +|+. ...+.++|.++.       .+|+++       +|+.+|++++..+|
T Consensus       102 ~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p  151 (168)
T CHL00033        102 NPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP  151 (168)
T ss_pred             CcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9998 499999999999       777766       56666667778888

>PRK11906 transcriptional regulator; Provisional

Probab=99.13  E-value=2.3e-09  Score=105.21  Aligned_cols=156  Identities=15%  Similarity=0.104  Sum_probs=119.4

Q ss_pred             CHHHHHHHHHHHH---HHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375          247 LAEEGATFASRAL---ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL  323 (444)
Q Consensus       247 ~~~eA~~~~~~al---~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l  323 (444)
                      ..+.|+..|.+++   ++. |.    .+.+|..++.|+....-....  .......+|.+..++|+ ++||+|+.++..+
T Consensus       273 ~~~~Al~lf~ra~~~~~ld-p~----~a~a~~~lA~~h~~~~~~g~~--~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~  344 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQ-TL----KTECYCLLAECHMSLALHGKS--ELELAAQKALELLDYVS-DITTVDGKILAIM  344 (458)
T ss_pred             HHHHHHHHHHHHhhcccCC-cc----cHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHH-hcCCCCHHHHHHH
Confidence            3457777888888   532 22    356677777766654211111  12345689999999999 9999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhC
Q 013375          324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQG  402 (444)
Q Consensus       324 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~-~~~~g  402 (444)
                      |.++.-.++++.|+..|++|+.++|+. +.+|...|+++.-.|+.++|+..++++++++|  -...+-..+--+ ..-..
T Consensus       345 g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP--~~~~~~~~~~~~~~~~~~  421 (458)
T PRK11906        345 GLITGLSGQAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEP--RRRKAVVIKECVDMYVPN  421 (458)
T ss_pred             HHHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999 59999999999999999999999999999999  443333333222 33445


Q ss_pred             CHHHHHHHHHH
Q 013375          403 QLKGAVETYTH  413 (444)
Q Consensus       403 ~~~~A~~~~~~  413 (444)
                      ..++|+..|-+
T Consensus       422 ~~~~~~~~~~~  432 (458)
T PRK11906        422 PLKNNIKLYYK  432 (458)
T ss_pred             chhhhHHHHhh
Confidence            67777777643

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.11  E-value=4.3e-09  Score=108.11  Aligned_cols=150  Identities=15%  Similarity=0.063  Sum_probs=110.8

Q ss_pred             hhcCCCCCCHHHHHH--HHHHHHHCCC---chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013375          186 ELLPGIINRKERYHI--LALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE  260 (444)
Q Consensus       186 ~al~~~p~~~~~~~~--la~~l~~~g~---~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~  260 (444)
                      ++...-|.++++|-.  .|.-+...++   +..|+.+|++|+  +++|++..++..++..+....+              
T Consensus       328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai--~ldP~~a~a~A~la~~~~~~~~--------------  391 (517)
T PRK10153        328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL--KSEPDFTYAQAEKALADIVRHS--------------  391 (517)
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHh--------------
Confidence            344555666666544  4666655544   678888889999  8899888777554332211000              


Q ss_pred             HcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013375          261 CLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--NMRDLSILYRLSLEYAEQRKLNAAHY  338 (444)
Q Consensus       261 ~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~--~P~~~~a~~~lg~~~~~~g~~~~A~~  338 (444)
                       ..+.+                            ..+...+.+..++++ .+  +|.++.++.-+|..+...|++++|..
T Consensus       392 -~~~~~----------------------------~~~l~~a~~~~~~a~-al~~~~~~~~~~~ala~~~~~~g~~~~A~~  441 (517)
T PRK10153        392 -QQPLD----------------------------EKQLAALSTELDNIV-ALPELNVLPRIYEILAVQALVKGKTDEAYQ  441 (517)
T ss_pred             -cCCcc----------------------------HHHHHHHHHHHHHhh-hcccCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence             00000                            123456667777777 64  88889999999999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       339 ~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .+++|++++|+  +.+|..+|.++...|++++|+..|++|+.++|
T Consensus       442 ~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        442 AINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            99999999994  58999999999999999999999999999999

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.08  E-value=2.3e-10  Score=83.61  Aligned_cols=64  Identities=23%  Similarity=0.230  Sum_probs=59.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375          166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL  231 (444)
Q Consensus       166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~  231 (444)
                      .+|.++...|++++|+..|+++++.+|+++++|+.+|.++..+|++++|+..|++++  +.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL--ELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCCC
Confidence            578999999999999999999999999999999999999999999999999999999  8999875

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=5.8e-09  Score=95.69  Aligned_cols=257  Identities=18%  Similarity=0.124  Sum_probs=180.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375          134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV  213 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~  213 (444)
                      ...+++.||..+     ..-.+++|.+......||-+|....+|..|.++|++.-.+.|......+..+..+++.+.+..
T Consensus        22 ~d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   22 RDARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            345677787765     345678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchH
Q 013375          214 ALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF  292 (444)
Q Consensus       214 A~~~~~~al~~~~~P~-~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~  292 (444)
                      |+.+.....  . +|+ .....-.-+.+.|. .+++..+    +-.++..|...+   +....+.|-...+         
T Consensus        97 ALrV~~~~~--D-~~~L~~~~lqLqaAIkYs-e~Dl~g~----rsLveQlp~en~---Ad~~in~gCllyk---------  156 (459)
T KOG4340|consen   97 ALRVAFLLL--D-NPALHSRVLQLQAAIKYS-EGDLPGS----RSLVEQLPSENE---ADGQINLGCLLYK---------  156 (459)
T ss_pred             HHHHHHHhc--C-CHHHHHHHHHHHHHHhcc-cccCcch----HHHHHhccCCCc---cchhccchheeec---------
Confidence            999988877  2 233 11122223334333 2333222    334454553221   4556667766654         


Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCCCC-----------------
Q 013375          293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGGSN-----------------  351 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~-----------------  351 (444)
                        .|++++|++-|+.++ +...-+|-.-|+++.++++.|+++.|+++....++    -.|+..                 
T Consensus       157 --egqyEaAvqkFqaAl-qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~  233 (459)
T KOG4340|consen  157 --EGQYEAAVQKFQAAL-QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL  233 (459)
T ss_pred             --cccHHHHHHHHHHHH-hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence              368999999999999 99999999999999999999999999988776654    345421                 


Q ss_pred             -------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          352 -------LKGWLLMARILSAQKRYEDAETILNAALDQTGKW---EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       352 -------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                             .++++..+.+++..|+++.|.+.+.   +..|+.   -++..+.+++.. ...|++-+..+-+.-++++.|=-
T Consensus       234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt---DmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP  309 (459)
T KOG4340|consen  234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALT---DMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP  309 (459)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh---cCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence                   3456677788888888887766543   333421   134445555443 23455666666666666665533


Q ss_pred             h
Q 013375          422 T  422 (444)
Q Consensus       422 ~  422 (444)
                      .
T Consensus       310 ~  310 (459)
T KOG4340|consen  310 P  310 (459)
T ss_pred             h
Confidence            3

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.08  E-value=4.3e-10  Score=86.77  Aligned_cols=80  Identities=25%  Similarity=0.253  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      +++++|+..|++++ +.+|+  +...++.+|.++.++|++++|+..+++ ...+|.+ ..++..+|.++..+|+|++|+.
T Consensus         3 ~~y~~Ai~~~~k~~-~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLL-ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHH-HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence            34556666666666 55553  344555556666666666666666666 5555555 3555555666666666666666


Q ss_pred             HHHHH
Q 013375          374 ILNAA  378 (444)
Q Consensus       374 ~~~~a  378 (444)
                      +++++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            55543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.07  E-value=6.4e-10  Score=85.82  Aligned_cols=83  Identities=22%  Similarity=0.255  Sum_probs=73.9

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHH
Q 013375          329 EQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA  407 (444)
Q Consensus       329 ~~g~~~~A~~~~~~al~l~P~~-~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A  407 (444)
                      .+|++++|+..|+++++.+|.+ ....|+.+|.+++.+|+|++|+.++++ ++.+|  .+...++.+|.++.++|++++|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHH
Confidence            3689999999999999999953 137888899999999999999999999 88888  8889999999999999999999


Q ss_pred             HHHHHHH
Q 013375          408 VETYTHL  414 (444)
Q Consensus       408 ~~~~~~a  414 (444)
                      +..|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.07  E-value=5.3e-10  Score=81.67  Aligned_cols=64  Identities=27%  Similarity=0.388  Sum_probs=50.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ  387 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~  387 (444)
                      +.+|..+...|++++|+..|+++++.+|++ ..+|..+|.++..+|++++|+.+|+++++.+|  ++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P--~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDP--DN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CC
Confidence            457778888888888888888888888887 48888888888888888888888888888888  55

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.07  E-value=2.6e-08  Score=92.71  Aligned_cols=201  Identities=12%  Similarity=-0.017  Sum_probs=129.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH---HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH--
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY---HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA--  233 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a--  233 (444)
                      .++..++..|..+...|++++|++.|++++...|..+.+.   +.+|.++++.|++++|+..|++.+  +.+|+++.+  
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi--~~~P~~~~~~~  107 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDY  107 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCcCCCchHH
Confidence            3566677888888888999999999999999888887655   888999999999999999999999  888887653  


Q ss_pred             -HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375          234 -LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST  312 (444)
Q Consensus       234 -~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~  312 (444)
                       ++..|.. ....++     ..+.....+ +.               ...           ......+|+..|++.+ ..
T Consensus       108 a~Y~~g~~-~~~~~~-----~~~~~~~~~-~~---------------~~r-----------D~~~~~~A~~~~~~li-~~  153 (243)
T PRK10866        108 VLYMRGLT-NMALDD-----SALQGFFGV-DR---------------SDR-----------DPQHARAAFRDFSKLV-RG  153 (243)
T ss_pred             HHHHHHHh-hhhcch-----hhhhhccCC-Cc---------------ccc-----------CHHHHHHHHHHHHHHH-HH
Confidence             3322221 111100     000000000 00               000           0122457888899999 88


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHH
Q 013375          313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELL  391 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~  391 (444)
                      -|++.-+              .+|......+   +-.- +.--+..|..|.+.|+|.-|+.-++.+++..|+. ...+++
T Consensus       154 yP~S~ya--------------~~A~~rl~~l---~~~l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal  215 (243)
T PRK10866        154 YPNSQYT--------------TDATKRLVFL---KDRL-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL  215 (243)
T ss_pred             CcCChhH--------------HHHHHHHHHH---HHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence            8887532              2222222221   1111 1333456778888888888888888888887731 236788


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHH
Q 013375          392 RTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       392 ~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      +.++..+..+|..++|....+.
T Consensus       216 ~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        216 PLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHcCChHHHHHHHHH
Confidence            8888888888888888766543

>PRK11906 transcriptional regulator; Provisional

Probab=99.06  E-value=9.7e-09  Score=100.84  Aligned_cols=181  Identities=12%  Similarity=0.041  Sum_probs=122.3

Q ss_pred             hCCCCH---HHH----HHHHHHHHhcCCH---HHHHHHHHhhc---CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          156 RIEWDP---SIL----DHLSFAFSIAGDL---SSLATQIEELL---PGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       156 ~~p~~~---~~~----~~lg~~l~~~g~~---~~A~~~~~~al---~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      ..|.+.   ++|    ++.|......+..   +.|...|++++   +++|+.+.+|-.++.+++..            ++
T Consensus       243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~------------~~  310 (458)
T PRK11906        243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL------------AL  310 (458)
T ss_pred             CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH------------HH
Confidence            335555   555    4555555544433   56667777777   77777777777777665542            00


Q ss_pred             cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH
Q 013375          223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL  302 (444)
Q Consensus       223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~  302 (444)
                      - ...+               ......+|....++++++.+.+     +.++..+|.+....           ++++.|+
T Consensus       311 ~-g~~~---------------~~~~~~~a~~~A~rAveld~~D-----a~a~~~~g~~~~~~-----------~~~~~a~  358 (458)
T PRK11906        311 H-GKSE---------------LELAAQKALELLDYVSDITTVD-----GKILAIMGLITGLS-----------GQAKVSH  358 (458)
T ss_pred             h-cCCC---------------chHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhh-----------cchhhHH
Confidence            0 0000               0122335566666666643322     45666666655433           4588999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHccCHHHHHHHHHHHHhh
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~-l~~~g~~~eA~~~~~~al~~  381 (444)
                      ..|++|+ .++|+.+.+|+..|+++.-.|+.++|.+.++++++++|--. .+-...-++ .+.-...++|+..|-+-.+.
T Consensus       359 ~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (458)
T PRK11906        359 ILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR-KAVVIKECVDMYVPNPLKNNIKLYYKETES  436 (458)
T ss_pred             HHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh-HHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence            9999999 99999999999999999999999999999999999999873 554444444 56678889999988765543


Q ss_pred             c
Q 013375          382 T  382 (444)
Q Consensus       382 ~  382 (444)
                      .
T Consensus       437 ~  437 (458)
T PRK11906        437 E  437 (458)
T ss_pred             c
Confidence            3

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.05  E-value=3.2e-07  Score=82.27  Aligned_cols=207  Identities=27%  Similarity=0.193  Sum_probs=170.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLP--GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      ........+..+...+++..+...+...+.  ..+.....++.+|..+...+++.+++..+.+++  ..+++........
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  135 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL--ALDPDPDLAEALL  135 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--cCCCCcchHHHHH
Confidence            366778889999999999999999999997  789999999999999999999999999999999  7777764434333


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-C
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-D  316 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-~  316 (444)
                      ...++...+++++|+..+.+++. ..+.. ..........+..+.           ..+++++|+..+.+++ ...|. .
T Consensus       136 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~-~~~~~~~  201 (291)
T COG0457         136 ALGALYELGDYEEALELYEKALE-LDPEL-NELAEALLALGALLE-----------ALGRYEEALELLEKAL-KLNPDDD  201 (291)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh-cCCCc-cchHHHHHHhhhHHH-----------HhcCHHHHHHHHHHHH-hhCcccc
Confidence            33145567999999999999988 44310 011233333333322           2357899999999999 99999 7


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ...+..++..+...+++++|+..+.+++...|+. ...+..++..+...++++++...+.+++...|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999996 47888888888877889999999999999999

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.01  E-value=7.9e-09  Score=84.71  Aligned_cols=98  Identities=21%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC---cHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE---QGELL  391 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~---~~~~~  391 (444)
                      |.++|++|+++-..|+.++|+..|+++++..++.+  ..+++.+|..+..+|++++|+..+++++...|  +   +..+.
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p--~~~~~~~l~   78 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP--DDELNAALR   78 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHH
Confidence            46789999999999999999999999999765542  36889999999999999999999999999989  6   67788


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          392 RTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       392 ~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      ..++.++...|+.++|+..+-.++.
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999999998877664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=6.8e-08  Score=90.68  Aligned_cols=84  Identities=20%  Similarity=0.147  Sum_probs=64.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHH
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVA  214 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A  214 (444)
                      ..+++.||.++.-.   .-+.+ .+..+.-.-+|..+...|+|++|...|+-+...+..+.+.|.+||.+.+-+|.|.+|
T Consensus        35 ~rDytGAislLefk---~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   35 NRDYTGAISLLEFK---LNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             cccchhHHHHHHHh---hccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            44677888776211   00111 111234445788999999999999999999998888999999999999999999999


Q ss_pred             HHHHHHhh
Q 013375          215 LNLLRTLL  222 (444)
Q Consensus       215 ~~~~~~al  222 (444)
                      .+.-.+|-
T Consensus       111 ~~~~~ka~  118 (557)
T KOG3785|consen  111 KSIAEKAP  118 (557)
T ss_pred             HHHHhhCC
Confidence            99887766

>PRK15331 chaperone protein SicA; Provisional

Probab=98.98  E-value=4.1e-09  Score=89.78  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=90.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013375          306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW  385 (444)
Q Consensus       306 ~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~  385 (444)
                      +.+. .+.++.-+..|..|.-++..|++++|...|+-....+|.++ ..|+.||.++..+|+|++|+..|..|..+.+  
T Consensus        27 k~l~-gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~-~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--  102 (165)
T PRK15331         27 KDVH-GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP-DYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--  102 (165)
T ss_pred             HHHh-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence            3344 56677777888888888888888888888888888888884 8888888888888888888888888888888  


Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      +++...|+.|.++..+|+.+.|..+|..+++
T Consensus       103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            7888888888888888888888888888887

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.98  E-value=2.1e-07  Score=84.37  Aligned_cols=189  Identities=18%  Similarity=0.145  Sum_probs=109.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN---RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI  236 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~  236 (444)
                      +++.++..|..+...|++.+|+..|++++...|.   -+++++.+|.+++..|++++|+..|++-+  +..|+++.+   
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi--~~yP~~~~~---   78 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI--KLYPNSPKA---   78 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HH-TT-TTH---
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCCcch---
Confidence            3445556666666666666666666666554443   24555666666666666666666666666  555554432   


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC
Q 013375          237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD  316 (444)
Q Consensus       237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~  316 (444)
                                                        ..+++.+|.++..+...........+...+|+..|++.+ ..-|++
T Consensus        79 ----------------------------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li-~~yP~S  123 (203)
T PF13525_consen   79 ----------------------------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI-KRYPNS  123 (203)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH-HH-TTS
T ss_pred             ----------------------------------hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH-HHCcCc
Confidence                                              234444454444432211000011245678999999999 999998


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRT  393 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~  393 (444)
                      +-+              .+|......+-.   .- +.--+..|..|.+.|+|..|+..++.+++..|  +.   .+++..
T Consensus       124 ~y~--------------~~A~~~l~~l~~---~l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--~t~~~~~al~~  183 (203)
T PF13525_consen  124 EYA--------------EEAKKRLAELRN---RL-AEHELYIARFYYKRGKYKAAIIRFQYVIENYP--DTPAAEEALAR  183 (203)
T ss_dssp             TTH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--TSHHHHHHHHH
T ss_pred             hHH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CCchHHHHHHH
Confidence            633              233333332211   11 23344578899999999999999999999999  54   477888


Q ss_pred             HHHHHHHhCCHHHHH
Q 013375          394 KAKVQLVQGQLKGAV  408 (444)
Q Consensus       394 la~~~~~~g~~~~A~  408 (444)
                      ++..+..+|..+.|-
T Consensus       184 l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  184 LAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHTT-HHHHH
T ss_pred             HHHHHHHhCChHHHH
Confidence            999999999888443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.98  E-value=5.1e-06  Score=83.75  Aligned_cols=364  Identities=13%  Similarity=0.077  Sum_probs=238.8

Q ss_pred             HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375            9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR   88 (444)
Q Consensus         9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~   88 (444)
                      .++.|+.+-.+++  |+..+-+..|..+++..+...+.|.|             ...+-..|.+|...|+++.|-..|++
T Consensus       348 nV~eW~kRV~l~e--~~~~~~i~tyteAv~~vdP~ka~Gs~-------------~~Lw~~faklYe~~~~l~~aRvifek  412 (835)
T KOG2047|consen  348 NVEEWHKRVKLYE--GNAAEQINTYTEAVKTVDPKKAVGSP-------------GTLWVEFAKLYENNGDLDDARVIFEK  412 (835)
T ss_pred             cHHHHHhhhhhhc--CChHHHHHHHHHHHHccCcccCCCCh-------------hhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            4567777766654  67788888899888765332222222             24556677899999999999999999


Q ss_pred             HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH----------H---HHHHh
Q 013375           89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL----------R---KVALK  155 (444)
Q Consensus        89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~----------~---~~~l~  155 (444)
                      +++.|.. .-+....+--..|++-++.                    .+++.|..++..+.          +   +.+..
T Consensus       413 a~~V~y~-~v~dLa~vw~~waemElrh--------------------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~  471 (835)
T KOG2047|consen  413 ATKVPYK-TVEDLAEVWCAWAEMELRH--------------------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQA  471 (835)
T ss_pred             hhcCCcc-chHHHHHHHHHHHHHHHhh--------------------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence            9998421 1122233333444443332                    23444444432210          0   00000


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC--CChHH
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPA  233 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P--~~~~a  233 (444)
                      +.-....+|...+......|-++.-...|++++.+.--.|..-.|.|..+....-+++|.++|++.+  .+.|  .-.+.
T Consensus       472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI--~LFk~p~v~di  549 (835)
T KOG2047|consen  472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI--SLFKWPNVYDI  549 (835)
T ss_pred             HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC--ccCCCccHHHH
Confidence            0112456788888888889999999999999999999999999999999999999999999999999  6654  33333


Q ss_pred             HHH-HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375          234 LLI-ASK-ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS  311 (444)
Q Consensus       234 ~~~-~~~-~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~  311 (444)
                      |.. +.. +....+-..+.|...|+++|+..||..    +...+.+   |.+..       ++-|....|++.|++|.+.
T Consensus       550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~----aKtiyLl---YA~lE-------Ee~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH----AKTIYLL---YAKLE-------EEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH---HHHHH-------HHhhHHHHHHHHHHHHHhc
Confidence            321 111 111235578999999999999777642    2222221   11111       2235667899999998856


Q ss_pred             hCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHH-HHHHHHHHHHccCHHHHHHHHHHHHhh-cCCCCcH
Q 013375          312 TNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKG-WLLMARILSAQKRYEDAETILNAALDQ-TGKWEQG  388 (444)
Q Consensus       312 ~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~-~~~la~~l~~~g~~~eA~~~~~~al~~-~P~~~~~  388 (444)
                      .+|.+--..+++-..-+. .=-...-...|++|++.=|+..+.. -...+..-.+.|..+.|..+|.-+-+. +|+ .+.
T Consensus       616 v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr-~~~  694 (835)
T KOG2047|consen  616 VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR-VTT  694 (835)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc-CCh
Confidence            667666666665433221 1224456788999999999864322 235688889999999999999888875 454 467


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCcc
Q 013375          389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK  429 (444)
Q Consensus       389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~  429 (444)
                      +.|-.--....+.|+    .+.|+..|.+.....-+-..+.
T Consensus       695 ~fW~twk~FEvrHGn----edT~keMLRikRsvqa~yn~~~  731 (835)
T KOG2047|consen  695 EFWDTWKEFEVRHGN----EDTYKEMLRIKRSVQATYNTDV  731 (835)
T ss_pred             HHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhhhhhH
Confidence            777766677778888    4567777776665554444333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.97  E-value=1.6e-07  Score=87.49  Aligned_cols=177  Identities=15%  Similarity=-0.014  Sum_probs=122.4

Q ss_pred             CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375          193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQM  269 (444)
Q Consensus       193 ~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~  269 (444)
                      ..+..+|..|..++..|++++|+..|++++  ...|+.+.+.   +.+|.+++. .+++++|+..+++.++..|.++.  
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~--  104 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPN--  104 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCc--
Confidence            477889999999999999999999999999  8999987654   566666554 78999999999999998777653  


Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      ...+++.+|.++...+.                ..+..-. .+++.+           ..+....+|+..|++.++.-|+
T Consensus       105 ~~~a~Y~~g~~~~~~~~----------------~~~~~~~-~~~~~~-----------rD~~~~~~A~~~~~~li~~yP~  156 (243)
T PRK10866        105 IDYVLYMRGLTNMALDD----------------SALQGFF-GVDRSD-----------RDPQHARAAFRDFSKLVRGYPN  156 (243)
T ss_pred             hHHHHHHHHHhhhhcch----------------hhhhhcc-CCCccc-----------cCHHHHHHHHHHHHHHHHHCcC
Confidence            35678888877543211                1122222 222221           1123356799999999999999


Q ss_pred             CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .. -              ..+|...+...-.     .-..--+..|..+.+.|++..|+..++.+++-.|+-.
T Consensus       157 S~-y--------------a~~A~~rl~~l~~-----~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~  209 (243)
T PRK10866        157 SQ-Y--------------TTDATKRLVFLKD-----RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ  209 (243)
T ss_pred             Ch-h--------------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc
Confidence            63 2              1222222111111     1122233678888899999999999999998777543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.96  E-value=2.7e-06  Score=85.75  Aligned_cols=255  Identities=12%  Similarity=0.045  Sum_probs=175.9

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcC-CCCCC-----HHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP-GIINR-----KERYHILALCYYGAGEDLVALNLLRTLLS  223 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~l~~~g~~~~A~~~~~~al~  223 (444)
                      ...++.++|++.+-|.....+  ..|+..+-+..|..|++ .+|..     ...|..+|..|...|+.+.|...|++++ 
T Consensus       338 NsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~-  414 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT-  414 (835)
T ss_pred             HHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-
Confidence            466778899998888765544  46888888888887764 45543     3578899999999999999999999999 


Q ss_pred             CCCCCCCh----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc------hhhhHHHHHhh-hhhhhhhhhhhchH
Q 013375          224 GSEDPKCL----PALLIASKICGEYPDLAEEGATFASRALECLGDGCD------QMESTANCLLG-ISLSAQSKVAITDF  292 (444)
Q Consensus       224 ~~~~P~~~----~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~------~~~~~a~~~lg-~~~~~~~~~~~~~~  292 (444)
                       +.+=..+    .+|..-|.+-+. ..+++.|+...+++.. .|..+.      ....++..... .++..-.+..    
T Consensus       415 -~V~y~~v~dLa~vw~~waemElr-h~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle----  487 (835)
T KOG2047|consen  415 -KVPYKTVEDLAEVWCAWAEMELR-HENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE----  487 (835)
T ss_pred             -cCCccchHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH----
Confidence             4443322    233333444344 4578889999888887 444321      00011111100 0111111100    


Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHH---ccCH
Q 013375          293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSA---QKRY  368 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~~la~~l~~---~g~~  368 (444)
                      +..|-++.-..+|++++ .+.=-.|....|.|..+.+..-+++|.+.|+|.+.|.|-.. .+.|+..-..+.+   -...
T Consensus       488 Es~gtfestk~vYdrii-dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl  566 (835)
T KOG2047|consen  488 ESLGTFESTKAVYDRII-DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL  566 (835)
T ss_pred             HHhccHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence            12355677788999999 99999999999999999999999999999999999986521 3566654333333   2467


Q ss_pred             HHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          369 EDAETILNAALDQTGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       369 ~eA~~~~~~al~~~P~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      +.|...|++||+.-|. .+ -.++...+++..+.|-...|++.|+++-.
T Consensus       567 EraRdLFEqaL~~Cpp-~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  567 ERARDLFEQALDGCPP-EHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            8899999999998873 33 45566778899999999999999988753

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.95  E-value=1.9e-08  Score=86.13  Aligned_cols=119  Identities=18%  Similarity=0.061  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILY  321 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~  321 (444)
                      .++...+...+++.++..|..  .+...+.+.++.++...           |++++|+..|++++ ...|++   +.+.+
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~-----------g~~~~A~~~l~~~~-~~~~d~~l~~~a~l   89 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQ-----------GDYDEAKAALEKAL-ANAPDPELKPLARL   89 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCHHHHHHHHH
Confidence            456666777777777754443  24457777888877654           67899999999999 877766   45788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      .||.++...|++++|+..++.. .-.+-. ..++..+|.++..+|++++|+..|++||
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~-~~~~~~-~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQI-PDEAFK-ALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc-cCcchH-HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999773 333333 3788899999999999999999999885

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.93  E-value=1.3e-08  Score=95.53  Aligned_cols=106  Identities=9%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHH
Q 013375          317 LSILYRLSLEY-AEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLR  392 (444)
Q Consensus       317 ~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~  392 (444)
                      ...+|..|..+ ...|++++|+..|++.++..|+++  ..+++.+|.++..+|++++|+..|+++++..|+. ..+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34445554444 334556666666666666555541  1455555666666666666666666665555510 1345555


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          393 TKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .+|.++..+|++++|...|+++++.+|+..
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            555565556666666666666655555433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.93  E-value=1.7e-06  Score=77.51  Aligned_cols=224  Identities=23%  Similarity=0.182  Sum_probs=185.4

Q ss_pred             cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC--CCCCChHHHHHHHHHHhcCCCCHH
Q 013375          174 AGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGS--EDPKCLPALLIASKICGEYPDLAE  249 (444)
Q Consensus       174 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~--~~P~~~~a~~~~~~~~~~~~~~~~  249 (444)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+...+  .  ..|.....+...+... ...+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~  112 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL--ELELLPNLAEALLNLGLLL-EALGKYE  112 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH--hhhhccchHHHHHHHHHHH-HHHhhHH
Confidence            57788888999999988887  48889999999999999999999999999  6  5777776666555544 4467788


Q ss_pred             HHHHHHHHHHHHcCCCcchhhhHHHHHhhh-hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC---CCHHHHHHHHH
Q 013375          250 EGATFASRALECLGDGCDQMESTANCLLGI-SLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---RDLSILYRLSL  325 (444)
Q Consensus       250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~-~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P---~~~~a~~~lg~  325 (444)
                      +++..+.+++...+..     .......+. ++..           .+++++|+..|.+++ ..+|   ........++.
T Consensus       113 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~  175 (291)
T COG0457         113 EALELLEKALALDPDP-----DLAEALLALGALYE-----------LGDYEEALELYEKAL-ELDPELNELAEALLALGA  175 (291)
T ss_pred             HHHHHHHHHHcCCCCc-----chHHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-hcCCCccchHHHHHHhhh
Confidence            9999999999844332     122333333 3433           467899999999999 8888   46677788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL  404 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~  404 (444)
                      .+...+++++|+..+.+++...|. .. ..+..++..+...+++++|+..+.+++...|  .....+...+..+...|..
T Consensus       176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  252 (291)
T COG0457         176 LLEALGRYEEALELLEKALKLNPDDDA-EALLNLGLLYLKLGKYEEALEYYEKALELDP--DNAEALYNLALLLLELGRY  252 (291)
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCcccch-HHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--ccHHHHhhHHHHHHHcCCH
Confidence            888999999999999999999999 64 9999999999999999999999999999999  6677788888888888889


Q ss_pred             HHHHHHHHHHHHHHHh
Q 013375          405 KGAVETYTHLLAALQV  420 (444)
Q Consensus       405 ~~A~~~~~~al~l~~~  420 (444)
                      +++...+.+++...+.
T Consensus       253 ~~~~~~~~~~~~~~~~  268 (291)
T COG0457         253 EEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            9999999999998875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.91  E-value=2.4e-08  Score=95.42  Aligned_cols=183  Identities=19%  Similarity=0.152  Sum_probs=93.0

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      ++.|...|.+|...|+|++|.+.|.++.+...+.-   .+          ..-..++...+.+|.+. ++++|+..|+++
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~---~~----------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A  100 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG---DK----------FEAAKAYEEAANCYKKG-DPDEAIECYEKA  100 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----H----------HHHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC---CH----------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence            56677788888888899999998888877654421   11          11235666666776655 888999999888


Q ss_pred             hCc-CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCC-CcHHHHHHHHHHHHHHHHHhhCCC---CHHHH
Q 013375           90 LLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPR-NNIEEAILLLMILLRKVALKRIEW---DPSIL  164 (444)
Q Consensus        90 L~~-~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~eAi~~l~~~~~~~~l~~~p~---~~~~~  164 (444)
                      +.+ ...-++.........+|.                    +|... +++++|+..+..+..  .......   -...+
T Consensus       101 ~~~y~~~G~~~~aA~~~~~lA~--------------------~ye~~~~d~e~Ai~~Y~~A~~--~y~~e~~~~~a~~~~  158 (282)
T PF14938_consen  101 IEIYREAGRFSQAAKCLKELAE--------------------IYEEQLGDYEKAIEYYQKAAE--LYEQEGSPHSAAECL  158 (282)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHH--------------------HHCCTT--HHHHHHHHHHHHH--HHHHTT-HHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHH--------------------HHHHHcCCHHHHHHHHHHHHH--HHHHCCChhhHHHHH
Confidence            876 111122222222222332                    23333 455556555533310  0011010   12244


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcCCCCCC----H---HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          165 DHLSFAFSIAGDLSSLATQIEELLPGIINR----K---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~----~---~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                      ..+|.++.+.|+|++|++.|+++....-++    .   +.++..+.+++..|++..|...+++..  ..+|..
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~--~~~~~F  229 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC--SQDPSF  229 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG--TTSTTS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCC
Confidence            455555555556666665555554332111    1   223444555555555555555555555  555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.90  E-value=4.5e-08  Score=88.83  Aligned_cols=180  Identities=16%  Similarity=0.108  Sum_probs=116.6

Q ss_pred             ccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHH
Q 013375          127 QMGSSFVPRNNIEEAILLLMILLRKVALKRIEW---DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHI  200 (444)
Q Consensus       127 ~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~---~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~  200 (444)
                      ..+..+...|++++|+..+     +.+....|.   .+.+...+|.++...|+++.|+..|++.++..|+++   .+++.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f-----~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLF-----EKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHH-----HHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH-----HHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            4455667889999999986     455666665   456889999999999999999999999999988865   57888


Q ss_pred             HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013375          201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS  280 (444)
Q Consensus       201 la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~  280 (444)
                      +|.+++.+.         ...+  ..+               ...+...+|+..++..++..|.+.-  ...+...    
T Consensus        85 ~g~~~~~~~---------~~~~--~~~---------------~D~~~~~~A~~~~~~li~~yP~S~y--~~~A~~~----  132 (203)
T PF13525_consen   85 LGLSYYKQI---------PGIL--RSD---------------RDQTSTRKAIEEFEELIKRYPNSEY--AEEAKKR----  132 (203)
T ss_dssp             HHHHHHHHH---------HHHH---TT------------------HHHHHHHHHHHHHHHH-TTSTT--HHHHHHH----
T ss_pred             HHHHHHHhC---------ccch--hcc---------------cChHHHHHHHHHHHHHHHHCcCchH--HHHHHHH----
Confidence            888776651         1111  011               1223455788889999998876531  1122111    


Q ss_pred             hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHH
Q 013375          281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLM  358 (444)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~l  358 (444)
                                           +..++..+       ..--+.+|..|.+.|.+..|+..++.+++--|+.+  .+++..+
T Consensus       133 ---------------------l~~l~~~l-------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  133 ---------------------LAELRNRL-------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             ---------------------HHHHHHHH-------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence                                 22222223       23345677788888888888888888888888752  1466777


Q ss_pred             HHHHHHccCHHHH
Q 013375          359 ARILSAQKRYEDA  371 (444)
Q Consensus       359 a~~l~~~g~~~eA  371 (444)
                      +..+..+|..+.|
T Consensus       185 ~~~y~~l~~~~~a  197 (203)
T PF13525_consen  185 AEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHTT-HHHH
T ss_pred             HHHHHHhCChHHH
Confidence            7788888877744

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.90  E-value=2.9e-08  Score=93.21  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=84.6

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHH
Q 013375          296 TRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYED  370 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~e  370 (444)
                      +++++|+..|++.+ ...|++   +.+++.+|.+|...|++++|+..|++++...|+++  ..+++.+|.++..+|++++
T Consensus       157 ~~y~~Ai~af~~fl-~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~  235 (263)
T PRK10803        157 SRQDDAIVAFQNFV-KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK  235 (263)
T ss_pred             CCHHHHHHHHHHHH-HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence            57899999999999 999999   58999999999999999999999999999998852  3789999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcHHH
Q 013375          371 AETILNAALDQTGKWEQGEL  390 (444)
Q Consensus       371 A~~~~~~al~~~P~~~~~~~  390 (444)
                      |+..|+++++..|  ++..+
T Consensus       236 A~~~~~~vi~~yP--~s~~a  253 (263)
T PRK10803        236 AKAVYQQVIKKYP--GTDGA  253 (263)
T ss_pred             HHHHHHHHHHHCc--CCHHH
Confidence            9999999999999  66543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.88  E-value=1.1e-08  Score=100.36  Aligned_cols=72  Identities=14%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---WLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~---~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ..+|+++.+|+++|.+|..+|++++|+..|++|++++|++. ++   |+++|.+|..+|++++|+.++++|+++.+
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-eA~~A~yNLAcaya~LGr~dEAla~LrrALelsn  143 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-EAQAAYYNKACCHAYREEGKKAADCLRTALRDYN  143 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            67999999999999999999999999999999999999984 55   99999999999999999999999999843

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=3.4e-08  Score=94.82  Aligned_cols=125  Identities=16%  Similarity=0.120  Sum_probs=105.7

Q ss_pred             HHhhHHHHHHHHHHHHHhhCC----CCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          294 RATRQAKALQALVSAARSTNM----RDL-----------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P----~~~-----------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      +.|++..|...|++|+ ..=+    .+.           .++.||+.++.+++++.+|+..+.++|+++|+| ..+++..
T Consensus       220 K~gk~~~A~~~Yerav-~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-~KALyRr  297 (397)
T KOG0543|consen  220 KEGKFKLAKKRYERAV-SFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN-VKALYRR  297 (397)
T ss_pred             hhchHHHHHHHHHHHH-HHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-hhHHHHH
Confidence            3467888888888887 4322    111           267899999999999999999999999999999 5999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHhhh
Q 013375          359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA-VETYTHLLAALQVQT  422 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l~~~~~  422 (444)
                      |.++..+|+|+.|+..|++|+++.|  +|-.+..-+..+..+..++.+. .+.|.+.+.-.....
T Consensus       298 G~A~l~~~e~~~A~~df~ka~k~~P--~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~  360 (397)
T KOG0543|consen  298 GQALLALGEYDLARDDFQKALKLEP--SNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEES  360 (397)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999999999999999  8988888888888777777654 788999988776443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=9.2e-08  Score=87.94  Aligned_cols=216  Identities=14%  Similarity=0.053  Sum_probs=161.8

Q ss_pred             HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013375          172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG  251 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA  251 (444)
                      .+..+|..||+++..-.+.+|.+-.....||-+|+...+|..|-.+|++.-  .+.|....-.++-+...|. .+.+.+|
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~--ql~P~~~qYrlY~AQSLY~-A~i~ADA   97 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLG--QLHPELEQYRLYQAQSLYK-ACIYADA   97 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHH-hcccHHH
Confidence            455689999999999999999999999999999999999999999999999  8999988777766776654 5677777


Q ss_pred             HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q 013375          252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAE  329 (444)
Q Consensus       252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~~lg~~~~~  329 (444)
                      +.......+    + +.+..++.-.-+.+...           .+++..+    +..+ ..-|  ++++...+.|.++++
T Consensus        98 LrV~~~~~D----~-~~L~~~~lqLqaAIkYs-----------e~Dl~g~----rsLv-eQlp~en~Ad~~in~gCllyk  156 (459)
T KOG4340|consen   98 LRVAFLLLD----N-PALHSRVLQLQAAIKYS-----------EGDLPGS----RSLV-EQLPSENEADGQINLGCLLYK  156 (459)
T ss_pred             HHHHHHhcC----C-HHHHHHHHHHHHHHhcc-----------cccCcch----HHHH-HhccCCCccchhccchheeec
Confidence            765443322    2 22222222221111111           1223333    3344 5556  788999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH----hhcCCC--------------C-----
Q 013375          330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL----DQTGKW--------------E-----  386 (444)
Q Consensus       330 ~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al----~~~P~~--------------~-----  386 (444)
                      .|++++|++-|+.|+....-++ -.-++++.+++..|+|+.|+++....+    +..|..              .     
T Consensus       157 egqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l  235 (459)
T KOG4340|consen  157 EGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL  235 (459)
T ss_pred             cccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence            9999999999999999998886 777789999999999999998766555    455621              0     


Q ss_pred             ----cHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013375          387 ----QGELLRTKAKVQLVQGQLKGAVETYT  412 (444)
Q Consensus       387 ----~~~~~~~la~~~~~~g~~~~A~~~~~  412 (444)
                          -.+++..++.++.+.|+++.|.+.+.
T Consensus       236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  236 HQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             HHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                13566778889999999998887653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=9.9e-08  Score=91.71  Aligned_cols=145  Identities=12%  Similarity=0.080  Sum_probs=113.1

Q ss_pred             HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013375          199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG  278 (444)
Q Consensus       199 ~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg  278 (444)
                      -..|..|++.|+|..|...|++|+  ..-+             +...-..++.    +++.+        ....++.+++
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav--~~l~-------------~~~~~~~ee~----~~~~~--------~k~~~~lNlA  264 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAV--SFLE-------------YRRSFDEEEQ----KKAEA--------LKLACHLNLA  264 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHH--HHhh-------------ccccCCHHHH----HHHHH--------HHHHHhhHHH
Confidence            346889999999999999999999  2211             1111111111    12222        1245789999


Q ss_pred             hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      .|+.++           +++.+|+..-.+++ ..+|+|..++|..|.++..+|+++.|+..|+++++++|++. .+...+
T Consensus       265 ~c~lKl-----------~~~~~Ai~~c~kvL-e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-a~~~el  331 (397)
T KOG0543|consen  265 ACYLKL-----------KEYKEAIESCNKVL-ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-AARAEL  331 (397)
T ss_pred             HHHHhh-----------hhHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-HHHHHH
Confidence            999765           57899999999999 99999999999999999999999999999999999999994 888888


Q ss_pred             HHHHHHccCHHHH-HHHHHHHHhhcC
Q 013375          359 ARILSAQKRYEDA-ETILNAALDQTG  383 (444)
Q Consensus       359 a~~l~~~g~~~eA-~~~~~~al~~~P  383 (444)
                      ..+-.+..++.+. ...|.+.+..-+
T Consensus       332 ~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  332 IKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8888777777665 678888886544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.85  E-value=1.2e-08  Score=75.14  Aligned_cols=64  Identities=23%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       329 ~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      ..|++++|+..|++++..+|++ ..++..+|.++..+|++++|...+++++..+|  +++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDP--DNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT--THHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CHHHHHHHHh
Confidence            3455555555555555555555 35555555555555555555555555555555  4444444443

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=1.2e-07  Score=83.40  Aligned_cols=179  Identities=15%  Similarity=0.067  Sum_probs=120.5

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                      ...++..|+-+++++.+|.-+...|+++.|.+.|...++++|.+.-++.|.|..++--||++-|.+-+.+--  +.||++
T Consensus        89 tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY--Q~D~~D  166 (297)
T COG4785          89 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY--QDDPND  166 (297)
T ss_pred             hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH--hcCCCC
Confidence            345678899999999999999999999999999999999999999999999999999999999999999999  899998


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013375          231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR  310 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~  310 (444)
                      |-=-+.+--  ....-++.+|...+.+--+.....     ..+|+..+.-+-+....+  -..+.....+--..+-+.+ 
T Consensus       167 PfR~LWLYl--~E~k~dP~~A~tnL~qR~~~~d~e-----~WG~~iV~~yLgkiS~e~--l~~~~~a~a~~n~~~Ae~L-  236 (297)
T COG4785         167 PFRSLWLYL--NEQKLDPKQAKTNLKQRAEKSDKE-----QWGWNIVEFYLGKISEET--LMERLKADATDNTSLAEHL-  236 (297)
T ss_pred             hHHHHHHHH--HHhhCCHHHHHHHHHHHHHhccHh-----hhhHHHHHHHHhhccHHH--HHHHHHhhccchHHHHHHH-
Confidence            842222111  123345666665554333322211     223333332221111000  0000000000011222222 


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE  347 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  347 (444)
                            .++++.||.-+...|+.++|...|+-|++-+
T Consensus       237 ------TEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         237 ------TETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             ------HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence                  4678999999999999999999999888754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.83  E-value=2e-08  Score=75.00  Aligned_cols=71  Identities=27%  Similarity=0.291  Sum_probs=58.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013375          323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK  396 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~  396 (444)
                      |..+|...+++++|++.+++++.++|+++ ..|..+|.++..+|++++|+..++++++..|  ++..+...++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p--~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDP-ELWLQRARCLFQLGRYEEALEDLERALELSP--DDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC--CcHHHHHHHHh
Confidence            35677888888888888888888888884 8888888888888888888888888888888  77776665544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.83  E-value=7.6e-08  Score=78.92  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=83.1

Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      +++.++.++...           |+.++|+..|++++ ...++.   ..++..+|.++..+|++++|+..+++++.-.|+
T Consensus         3 ~~~~~A~a~d~~-----------G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSL-----------GREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            567777776554           67899999999999 887665   468899999999999999999999999999898


Q ss_pred             ---CChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375          350 ---SNLKGWLLMARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       350 ---~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~  381 (444)
                         +. .....++.++...|+++||+.++-.++..
T Consensus        71 ~~~~~-~l~~f~Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   71 DELNA-ALRVFLALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             ccccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence               63 77888999999999999999999888753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.83  E-value=8.3e-08  Score=94.68  Aligned_cols=112  Identities=19%  Similarity=0.117  Sum_probs=104.1

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      +++++|++.|++.. +.+|+   +...++.++...++-.+|++.+.+++..+|.+ ...+...+..+...++++.|+.+.
T Consensus       183 ~~~~~ai~lle~L~-~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iA  257 (395)
T PF09295_consen  183 QRYDEAIELLEKLR-ERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIA  257 (395)
T ss_pred             ccHHHHHHHHHHHH-hcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence            56899999999998 88765   66778999999999999999999999999998 699999999999999999999999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      ++++...|  ++...|+.++.+|..+|++++|+..++.+
T Consensus       258 k~av~lsP--~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  258 KKAVELSP--SEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHhCc--hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999  99999999999999999999999877754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.80  E-value=1.3e-08  Score=75.96  Aligned_cols=69  Identities=20%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      |..++...+++++|++++++++.++|+++..|+.+|.++..+|++++|+..|++++  +..|+++.+....
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l--~~~p~~~~~~~~~   69 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL--ELSPDDPDARALR   69 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH--HHCCCcHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999  8999998876543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.79  E-value=1.9e-08  Score=74.05  Aligned_cols=65  Identities=22%  Similarity=0.172  Sum_probs=59.2

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI  361 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~  361 (444)
                      .|++++|++.|++++ ..+|+|+++++.+|.++.+.|++++|...+++++..+|+++ ..+..++.+
T Consensus         4 ~~~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~l~a~i   68 (68)
T PF14559_consen    4 QGDYDEAIELLEKAL-QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP-EYQQLLAQI   68 (68)
T ss_dssp             TTHHHHHHHHHHHHH-HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH-HHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH-HHHHHHhcC
Confidence            578999999999999 99999999999999999999999999999999999999984 777777653

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.78  E-value=1.1e-06  Score=94.99  Aligned_cols=220  Identities=12%  Similarity=0.003  Sum_probs=172.8

Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH----HHHHHHHHHhcCCCCHHH
Q 013375          175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALLIASKICGEYPDLAEE  250 (444)
Q Consensus       175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~----a~~~~~~~~~~~~~~~~e  250 (444)
                      ++-.+..+-|++.+.-+|+++-.|.++-....+.++.++|.+..++||+ .++|..-+    .|..+.++- ..-|.-+.
T Consensus      1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~-tIN~REeeEKLNiWiA~lNlE-n~yG~ees 1515 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK-TINFREEEEKLNIWIAYLNLE-NAYGTEES 1515 (1710)
T ss_pred             ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh-hCCcchhHHHHHHHHHHHhHH-HhhCcHHH
Confidence            3334456778899999999999999999999999999999999999997 78876432    121111111 11244445


Q ss_pred             HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013375          251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ  330 (444)
Q Consensus       251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~  330 (444)
                      -.+.|+||-+...+      ...|..|.-+|..           .+.+++|.+.|+..+ +.-.+...+|...|..+.++
T Consensus      1516 l~kVFeRAcqycd~------~~V~~~L~~iy~k-----------~ek~~~A~ell~~m~-KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDA------YTVHLKLLGIYEK-----------SEKNDEADELLRLML-KKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred             HHHHHHHHHHhcch------HHHHHHHHHHHHH-----------hhcchhHHHHHHHHH-HHhcchhhHHHHHHHHHhcc
Confidence            56667777764332      2455556556643           467899999999999 66668899999999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 013375          331 RKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV  408 (444)
Q Consensus       331 g~~~~A~~~~~~al~l~P~--~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~  408 (444)
                      .+-++|...+++|+.--|.  | .+.....+.+.++.|+-+.+...|+..+...|  .-.++|.-......++|..+-..
T Consensus      1578 ne~~aa~~lL~rAL~~lPk~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred             cHHHHHHHHHHHHHhhcchhhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHH
Confidence            9999999999999999998  6 57888889999999999999999999999999  67889999999999999999999


Q ss_pred             HHHHHHHHH
Q 013375          409 ETYTHLLAA  417 (444)
Q Consensus       409 ~~~~~al~l  417 (444)
                      ..|++++.+
T Consensus      1655 ~lfeRvi~l 1663 (1710)
T KOG1070|consen 1655 DLFERVIEL 1663 (1710)
T ss_pred             HHHHHHHhc
Confidence            999999764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=6.3e-08  Score=84.12  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=57.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          324 SLEYAEQRKLNAAHYYAKMLLKLEGGSN----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       324 g~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      |.-+...|+|++|..-|..||++-|..+    ..+|.+.|.++.+++..+.|+..+.+||+++|  .+..++..+|.+|.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p--ty~kAl~RRAeaye  179 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP--TYEKALERRAEAYE  179 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc--hhHHHHHHHHHHHH
Confidence            4455555666666666666666665532    12444556666666666666666666666666  55555556666666


Q ss_pred             HhCCHHHHHHHHHHHHHHHHhhh
Q 013375          400 VQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       400 ~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ++.++++|++.|++++++.|++.
T Consensus       180 k~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchH
Confidence            66666666666666666655554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.75  E-value=3.8e-08  Score=96.60  Aligned_cols=70  Identities=17%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE---LLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       345 ~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      .-+|++ ..+|+++|.+|..+|+|++|+..|++||+++|  ++.+   +|+++|.++..+|++++|++++++++++
T Consensus        69 ~~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            368999 59999999999999999999999999999999  7775   4999999999999999999999999998

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.70  E-value=2.6e-07  Score=79.57  Aligned_cols=95  Identities=14%  Similarity=0.061  Sum_probs=75.8

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA  364 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~----------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~  364 (444)
                      .--++.|.+.++... ..||.|++.+++=|.++.++          .-+++|+.-|++||.++|+. ..++..+|.+++.
T Consensus         4 l~~FE~ark~aea~y-~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts   81 (186)
T PF06552_consen    4 LLFFEHARKKAEAAY-AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHH
Confidence            345789999999999 99999999999999998765          34678899999999999998 5999999999998


Q ss_pred             ccC-----------HHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          365 QKR-----------YEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       365 ~g~-----------~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      ++.           |++|..+|++|...+|  +|...+..
T Consensus        82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P--~ne~Y~ks  119 (186)
T PF06552_consen   82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDP--NNELYRKS  119 (186)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHHH-T--T-HHHHHH
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHhcCC--CcHHHHHH
Confidence            864           7889999999999999  66554433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.70  E-value=9.3e-09  Score=95.98  Aligned_cols=224  Identities=12%  Similarity=0.021  Sum_probs=141.3

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG  209 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g  209 (444)
                      +-|..+|+|+|||..+     ...+...|.++-.+.+.+.+|.++++|..|..-++.|+.++..+..+|...|.+-..+|
T Consensus       105 N~yFKQgKy~EAIDCY-----s~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCY-----STAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhccchhHHHHHh-----hhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            4566777777777765     33456667777777777777777777777777777777777777777777777777777


Q ss_pred             CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH----Hhhhhhhhhh
Q 013375          210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC----LLGISLSAQS  285 (444)
Q Consensus       210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~----~lg~~~~~~~  285 (444)
                      ...+|.+-++.+|  .+.|++.+..-..+.+.     ...|+    +-++.-.+...+.+-..+..    --|..++   
T Consensus       180 ~~~EAKkD~E~vL--~LEP~~~ELkK~~a~i~-----Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fs---  245 (536)
T KOG4648|consen  180 NNMEAKKDCETVL--ALEPKNIELKKSLARIN-----SLRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFS---  245 (536)
T ss_pred             hHHHHHHhHHHHH--hhCcccHHHHHHHHHhc-----chHhh----hHHhhcCCCCCccccchhhhccccCcchhhh---
Confidence            7777777777777  77777665432222221     11111    00111011100000000000    0122222   


Q ss_pred             hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 013375          286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ  365 (444)
Q Consensus       286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~  365 (444)
                              +.+.+..++.+|.+-+ ..+.++.....+ +..+.+..++++|+..+-+++-++|... ...-.-+..-.-.
T Consensus       246 --------k~~~~~~~i~~~~~~~-A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~-~~~s~~~~A~T~~  314 (536)
T KOG4648|consen  246 --------KKAMRSVPVVDVVSPR-ATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM-PDTSGPPKAETIA  314 (536)
T ss_pred             --------hhhccccceeEeeccc-cccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC-cccCCCchhHHHH
Confidence                    2355677777777776 666666655555 6677777888888888888888888763 6666666666667


Q ss_pred             cCHHHHHHHHHHHHhhcC
Q 013375          366 KRYEDAETILNAALDQTG  383 (444)
Q Consensus       366 g~~~eA~~~~~~al~~~P  383 (444)
                      |...|+...++.++.+.|
T Consensus       315 ~~~~E~K~~~~T~~~~~P  332 (536)
T KOG4648|consen  315 KTSKEVKPTKQTAVKVAP  332 (536)
T ss_pred             hhhhhcCcchhheeeecc
Confidence            778888888888888887

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=1e-06  Score=77.77  Aligned_cols=97  Identities=14%  Similarity=0.023  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013375          162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC  241 (444)
Q Consensus       162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~  241 (444)
                      ..++..|..|-..|-..-|.--|.+++.+.|+-+++++.||.-+...|+|+.|...|.-++  .+||.+-.++++.|. .
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~--ELDp~y~Ya~lNRgi-~  142 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL--ELDPTYNYAHLNRGI-A  142 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh--ccCCcchHHHhccce-e
Confidence            3566778888888888888888999999999999999999999999999999999999999  899998877765543 3


Q ss_pred             hcCCCCHHHHHHHHHHHHHH
Q 013375          242 GEYPDLAEEGATFASRALEC  261 (444)
Q Consensus       242 ~~~~~~~~eA~~~~~~al~~  261 (444)
                      +.-.|++.-|..-+.+.-+.
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             eeecCchHhhHHHHHHHHhc
Confidence            33467776666666666553

>PRK15331 chaperone protein SicA; Provisional

Probab=98.69  E-value=2.2e-07  Score=79.27  Aligned_cols=90  Identities=8%  Similarity=0.013  Sum_probs=84.3

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|++++|...|+-.. ..||.|++-|+.||.++..+|++++|+..|..|..+++++| ...+..|.++..+|+.++|+.+
T Consensus        50 ~Gk~~eA~~~F~~L~-~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-~p~f~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331         50 QGRLDEAETFFRFLC-IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-RPVFFTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             CCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CccchHHHHHHHhCCHHHHHHH
Confidence            478999999999999 99999999999999999999999999999999999999997 8889999999999999999999


Q ss_pred             HHHHHhhcCCCCcHH
Q 013375          375 LNAALDQTGKWEQGE  389 (444)
Q Consensus       375 ~~~al~~~P~~~~~~  389 (444)
                      |+.+++ .|  .+..
T Consensus       128 f~~a~~-~~--~~~~  139 (165)
T PRK15331        128 FELVNE-RT--EDES  139 (165)
T ss_pred             HHHHHh-Cc--chHH
Confidence            999998 46  5443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.67  E-value=1.3e-06  Score=83.50  Aligned_cols=102  Identities=19%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-C-c--
Q 013375          318 SILYRLSLEYAEQ-RKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-E-Q--  387 (444)
Q Consensus       318 ~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~-~--  387 (444)
                      ..+..+|.+|... |++++|+++|++|+++-....     ..++..+|.++...|+|++|+..|++.....-+. - .  
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            3556777788777 888888888888888633211     2466788888888899999999998888643200 1 1  


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          388 -GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       388 -~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                       ...++..+.+++..|++..|...+++.....|
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence             13455667788888888888888887766655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.66  E-value=3.2e-06  Score=72.94  Aligned_cols=130  Identities=23%  Similarity=0.247  Sum_probs=113.6

Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-  350 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-  350 (444)
                      .-.+-||..+..           .|++.||...|++++.-+--+|+..+..++.+....++..+|...+++..+-+|.. 
T Consensus        90 qnr~rLa~al~e-----------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r  158 (251)
T COG4700          90 QNRYRLANALAE-----------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR  158 (251)
T ss_pred             HHHHHHHHHHHH-----------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence            345667777654           46799999999999955778999999999999999999999999999999999974 


Q ss_pred             -ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          351 -NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       351 -~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                       + .....+|.++..+|++.+|.+.++.++.-.|   .+.+....+..+..+|+.++|-..|..+.+
T Consensus       159 ~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp---g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         159 SP-DGHLLFARTLAAQGKYADAESAFEVAISYYP---GPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             CC-CchHHHHHHHHhcCCchhHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence             4 6888999999999999999999999999999   567788889999999999999888877654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=2.5e-05  Score=71.28  Aligned_cols=222  Identities=18%  Similarity=0.071  Sum_probs=114.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS  238 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~  238 (444)
                      .+.+.-..+.++|..+|++..-+..-...-   -....+...++..+..-++.++=+....+.+. ...-+.......++
T Consensus        39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a-~~~~~sn~i~~l~a  114 (299)
T KOG3081|consen   39 TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVA-DSTDGSNLIDLLLA  114 (299)
T ss_pred             chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHH-hhccchhHHHHHHh
Confidence            555555566666766666644333221111   11223333445555555555555554444441 11111111222333


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~  318 (444)
                      .+-+...+++++|+....+...+        ...+..  -.++           .+..+.+-|.+..++.. +++.+.. 
T Consensus       115 a~i~~~~~~~deAl~~~~~~~~l--------E~~Al~--VqI~-----------lk~~r~d~A~~~lk~mq-~ided~t-  171 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGENL--------EAAALN--VQIL-----------LKMHRFDLAEKELKKMQ-QIDEDAT-  171 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccchH--------HHHHHH--HHHH-----------HHHHHHHHHHHHHHHHH-ccchHHH-
Confidence            33344566777776665542221        111111  1111           12345666777777766 6655433 


Q ss_pred             HHHHHHHHHHH--c--CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013375          319 ILYRLSLEYAE--Q--RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK  394 (444)
Q Consensus       319 a~~~lg~~~~~--~--g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l  394 (444)
                       +..||.++..  .  +++.+|.-+|+..-..-|-.+ ...+.++.+...+|||++|...++.||..+|  .+++.+.|+
T Consensus       172 -LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~-~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~Nl  247 (299)
T KOG3081|consen  172 -LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTP-LLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLANL  247 (299)
T ss_pred             -HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCh-HHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHHH
Confidence             3333333322  2  356677777777666333332 6666677777777777777777777777777  667777777


Q ss_pred             HHHHHHhCCHHHHHHHH
Q 013375          395 AKVQLVQGQLKGAVETY  411 (444)
Q Consensus       395 a~~~~~~g~~~~A~~~~  411 (444)
                      -.+-..+|...++.+-+
T Consensus       248 iv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  248 IVLALHLGKDAEVTERN  264 (299)
T ss_pred             HHHHHHhCCChHHHHHH
Confidence            77777777766655544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.57  E-value=1.2e-06  Score=86.64  Aligned_cols=115  Identities=18%  Similarity=0.168  Sum_probs=96.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013375          243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR  322 (444)
Q Consensus       243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~  322 (444)
                      ...+++++|+..+++..+..| +       +...++.++...           ++-.+|+..+.+++ ..+|.++..+..
T Consensus       180 ~~t~~~~~ai~lle~L~~~~p-e-------v~~~LA~v~l~~-----------~~E~~AI~ll~~aL-~~~p~d~~LL~~  239 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDP-E-------VAVLLARVYLLM-----------NEEVEAIRLLNEAL-KENPQDSELLNL  239 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCC-c-------HHHHHHHHHHhc-----------CcHHHHHHHHHHHH-HhCCCCHHHHHH
Confidence            446788999999998887432 1       334455555432           34579999999999 999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      .+..+...++++.|+...++++.+.|++ ..+|..|+.+|...|++++|+..+...
T Consensus       240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  240 QAEFLLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999999999999999999999998 599999999999999999999887643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.56  E-value=1.1e-06  Score=71.17  Aligned_cols=88  Identities=15%  Similarity=0.025  Sum_probs=57.1

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA  371 (444)
                      .|+.++|++.|.+++ .+-|..+.+++|.+.++.-+|+.++|++.+++|+++..+..   ..++...|.+|..+|+-+.|
T Consensus        56 ~g~Ld~AlE~F~qal-~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A  134 (175)
T KOG4555|consen   56 AGDLDGALELFGQAL-CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA  134 (175)
T ss_pred             ccchHHHHHHHHHHH-HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence            456666666666666 66666666666666666666666666666666666665431   13456666666666666666


Q ss_pred             HHHHHHHHhhcC
Q 013375          372 ETILNAALDQTG  383 (444)
Q Consensus       372 ~~~~~~al~~~P  383 (444)
                      ..-|+.|-++-.
T Consensus       135 R~DFe~AA~LGS  146 (175)
T KOG4555|consen  135 RADFEAAAQLGS  146 (175)
T ss_pred             HHhHHHHHHhCC
Confidence            666666666654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.3e-05  Score=71.45  Aligned_cols=197  Identities=11%  Similarity=-0.006  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH-HHHH-HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-RYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~-~~~~-la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      +...++..+...++.+.-+..+.+-+...-+... .+.- =|.++...|++++|++......       +.++..+.-.+
T Consensus        74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI  146 (299)
T KOG3081|consen   74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQI  146 (299)
T ss_pred             HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHH
Confidence            3344455555556666555555444443333333 4433 4778899999999999887743       44454444444


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                      .+ +..+++-|....++..++..+..-.-.+.+|..+...              .+...+|.-.|++.- +.-|..+..+
T Consensus       147 ~l-k~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g--------------gek~qdAfyifeE~s-~k~~~T~~ll  210 (299)
T KOG3081|consen  147 LL-KMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG--------------GEKIQDAFYIFEELS-EKTPPTPLLL  210 (299)
T ss_pred             HH-HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc--------------chhhhhHHHHHHHHh-cccCCChHHH
Confidence            44 3578888888888888743221111123444444432              245789999999999 8888899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH-HHHHHHhhcC
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET-ILNAALDQTG  383 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~-~~~~al~~~P  383 (444)
                      +..+.++..+|++++|...++.+|.-+|+++ +.+.++-.+-..+|.-.++.. .+.+.....|
T Consensus       211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p  273 (299)
T KOG3081|consen  211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDP-ETLANLIVLALHLGKDAEVTERNLSQLKLSHP  273 (299)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999996 999999888888999888775 4455556677

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.53  E-value=1.4e-07  Score=71.52  Aligned_cols=67  Identities=22%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhc---CCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQT---GKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~---P~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      .++.++|.++..+|+|++|+.+|+++++..   ++.  +-...+.++|.++..+|++++|++.|++++++.+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            344444444444444444444444444321   100  1244555555555555555555555555555543

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.49  E-value=5.1e-07  Score=68.30  Aligned_cols=69  Identities=20%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---C-CCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---G-GSN--LKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P-~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      |+-+.+++++|.+|..+|++++|+.+|++++.+.   + +++  +.++.++|.++..+|++++|+.++++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5557889999999999999999999999999763   2 211  4678999999999999999999999999864

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.46  E-value=1.9e-05  Score=68.23  Aligned_cols=157  Identities=18%  Similarity=0.045  Sum_probs=110.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCC
Q 013375          167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD  246 (444)
Q Consensus       167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~  246 (444)
                      ++.+....=+++.......+.+...|.. .-.+.||..+.+.|++.||..+|++++. .+.-+++..++.+++..     
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aq-----  134 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQ-----  134 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHH-----
Confidence            4444555556666666666666666644 4477899999999999999999999995 45555554333222211     


Q ss_pred             CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHH
Q 013375          247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLS  324 (444)
Q Consensus       247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg  324 (444)
                                                  +-                  .+++.+|...+++.. +.+|.  .|+....+|
T Consensus       135 ----------------------------fa------------------~~~~A~a~~tLe~l~-e~~pa~r~pd~~Ll~a  167 (251)
T COG4700         135 ----------------------------FA------------------IQEFAAAQQTLEDLM-EYNPAFRSPDGHLLFA  167 (251)
T ss_pred             ----------------------------Hh------------------hccHHHHHHHHHHHh-hcCCccCCCCchHHHH
Confidence                                        11                  134566777777777 77764  466778888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      .++..+|++.+|...|+.++.--|+.  .+....+..+.++||.++|..-+....
T Consensus       168 R~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         168 RTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            88999999999999999999988883  777888888999998888776554443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.46  E-value=4e-06  Score=70.06  Aligned_cols=107  Identities=13%  Similarity=0.023  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-cHHHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-QGELLRT  393 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~  393 (444)
                      +..++.-|....+.|+|++|++.|+....--|-.+  ..+.+.++.++++.|+|++|+..+++.++++|+.. -.-+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            45667777777777777777777777777666542  25667777777777777777777777777777321 1456667


Q ss_pred             HHHHHHHhCC---------------HHHHHHHHHHHHHHHHhhhh
Q 013375          394 KAKVQLVQGQ---------------LKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       394 la~~~~~~g~---------------~~~A~~~~~~al~l~~~~~~  423 (444)
                      +|.+...+..               ..+|...|+++++-+|+..-
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            7777777665               67777888888777775543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.46  E-value=6e-07  Score=84.11  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=90.9

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      +.|.|+|||.+|.+++ ..+|.|+-.+.|.+.+|.+++++..|...+..|+.+|-.. ..+|...|..-..+|...||..
T Consensus       109 KQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~~EAKk  186 (536)
T KOG4648|consen  109 KQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLGNNMEAKK  186 (536)
T ss_pred             hccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhHHHHHH
Confidence            3467999999999999 9999999999999999999999999999999999999988 6999999999999999999999


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      -++.+|++.|  ++.++.-..+.+
T Consensus       187 D~E~vL~LEP--~~~ELkK~~a~i  208 (536)
T KOG4648|consen  187 DCETVLALEP--KNIELKKSLARI  208 (536)
T ss_pred             hHHHHHhhCc--ccHHHHHHHHHh
Confidence            9999999999  776655544443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.42  E-value=0.00012  Score=79.79  Aligned_cols=247  Identities=8%  Similarity=-0.018  Sum_probs=189.7

Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCCH----HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC
Q 013375          153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRK----ERYHILALCYYGAGEDLVALNLLRTLLSGSED  227 (444)
Q Consensus       153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-~p~~~----~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~  227 (444)
                      .+..+|+..-.|...-.-....++.++|.+..++||.. ++...    ..|..+=++...-|.-+.-.+.|++|.  +. 
T Consensus      1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc--qy- 1526 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC--QY- 1526 (1710)
T ss_pred             HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH--Hh-
Confidence            34567999999999888899999999999999999964 45443    455555555555576677789999999  32 


Q ss_pred             CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHH
Q 013375          228 PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVS  307 (444)
Q Consensus       228 P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~  307 (444)
                      -+-..+|..+.+++ ....++++|.+.++..++.+...     ...|...|..+..+           ++-++|...+.+
T Consensus      1527 cd~~~V~~~L~~iy-~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~-----------ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIY-EKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQ-----------NEAEAARELLKR 1589 (1710)
T ss_pred             cchHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhcc-----------cHHHHHHHHHHH
Confidence            22234566677775 55688999999999999987632     35788888887654           345788999999


Q ss_pred             HHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--C
Q 013375          308 AARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--G  383 (444)
Q Consensus       308 al~~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~--P  383 (444)
                      |+ +--|.  +.+..-.-+.+.++.|+.+.+...|+-.+.-.|.- .+.|+-+...-.++|..+.+...|++++.+.  |
T Consensus      1590 AL-~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1590 AL-KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             HH-hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            99 89898  77888889999999999999999999999999998 5999999999999999999999999999764  5


Q ss_pred             CCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhhhh
Q 013375          384 KWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       384 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~~~~  423 (444)
                        .....+|.+=.-|.+. |+-......=.+|.+......+
T Consensus      1668 --kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s 1706 (1710)
T KOG1070|consen 1668 --KKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKS 1706 (1710)
T ss_pred             --hHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhh
Confidence              4445455444444444 4444444444667776665444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.42  E-value=7.3e-05  Score=70.91  Aligned_cols=207  Identities=11%  Similarity=-0.006  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-----
Q 013375          197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PALLIASKICGEYPDLAEEGATFASRALECLGDG-----  265 (444)
Q Consensus       197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-----  265 (444)
                      ++..+|.++..++.++++++.|+.|+  +...++.      .++..++.+ +....++++|+-+..++.++...-     
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~--~~A~~~~D~~LElqvcv~Lgsl-f~~l~D~~Kal~f~~kA~~lv~s~~l~d~  200 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKAL--RYAHNNDDAMLELQVCVSLGSL-FAQLKDYEKALFFPCKAAELVNSYGLKDW  200 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHH--HHhhccCCceeeeehhhhHHHH-HHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence            33445555555555555555555555  2222211      122223322 233445555555555555543211     


Q ss_pred             cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013375          266 CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN------MRDLSILYRLSLEYAEQRKLNAAHYY  339 (444)
Q Consensus       266 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~  339 (444)
                      ..-+...+.+.+++++..+|           +.-.|.++-+++. ++.      |-.+..+.-+|.+|...|+.+.|...
T Consensus       201 ~~kyr~~~lyhmaValR~~G-----------~LgdA~e~C~Ea~-klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r  268 (518)
T KOG1941|consen  201 SLKYRAMSLYHMAVALRLLG-----------RLGDAMECCEEAM-KLALQHGDRALQARCLLCFADIYRSRGDLERAFRR  268 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHHH-HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence            11233456677777776654           4555666666655 432      22344557889999999999999999


Q ss_pred             HHHHHhhcCCC-----ChHHHHHHHHHHHHccCHHH-----HHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHH
Q 013375          340 AKMLLKLEGGS-----NLKGWLLMARILSAQKRYED-----AETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLK  405 (444)
Q Consensus       340 ~~~al~l~P~~-----~~~~~~~la~~l~~~g~~~e-----A~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~  405 (444)
                      |+.|...-..-     .+.++...+.++....-..+     |++.-.+++++....    -....+..++.+|..+|.-+
T Consensus       269 Ye~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d  348 (518)
T KOG1941|consen  269 YEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD  348 (518)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh
Confidence            99997654321     02455556666655555555     888888888876410    12356778899999998888


Q ss_pred             HHHHHHHHHHHHH
Q 013375          406 GAVETYTHLLAAL  418 (444)
Q Consensus       406 ~A~~~~~~al~l~  418 (444)
                      +=-+.+.++-+..
T Consensus       349 ~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  349 ELRAHVVRAHECV  361 (518)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777777765433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.41  E-value=4.1e-06  Score=77.12  Aligned_cols=105  Identities=18%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK  396 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~la~  396 (444)
                      .|+.|.-++..|+|.+|...|...+..-|++.  ..+++-||.+++.+|+|++|...|..+++..|+. .-+++++-+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            67777777777888888888888888777752  2567777888888888888888888888777731 23577788888


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          397 VQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       397 ~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ++..+|+.++|...|+++++-+|+-.-+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            8888888888888888887777754433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.41  E-value=1.2e-05  Score=76.15  Aligned_cols=126  Identities=17%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------hHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---------LKGWLLMAR  360 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---------~~~~~~la~  360 (444)
                      +.++++++.|++|+ .+..++.+      +...||-.+.+.+++++|+.+..+|.++-....         ..+++.++.
T Consensus       136 s~fq~~Lesfe~A~-~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV  214 (518)
T KOG1941|consen  136 SVFQKALESFEKAL-RYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHHHHHHH-HHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence            45788888899888 76554443      457888889999999999999999888764321         134567788


Q ss_pred             HHHHccCHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          361 ILSAQKRYEDAETILNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       361 ~l~~~g~~~eA~~~~~~al~~~P~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .+..+|+.-+|.+++++|.++.-.    .-...-..-+|+++...|+.+.|+.-|+.+......-.
T Consensus       215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g  280 (518)
T KOG1941|consen  215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG  280 (518)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence            888899999999999988876410    02344556678899999999999999999887665433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.40  E-value=3.7e-06  Score=72.50  Aligned_cols=111  Identities=10%  Similarity=-0.022  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH---HHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013375          177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV---ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT  253 (444)
Q Consensus       177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~---A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~  253 (444)
                      |+.|.+.++.....+|.+++.+++-|.+|..+.++..   +..+                              +++|+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~m------------------------------iedAis   56 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKM------------------------------IEDAIS   56 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHH------------------------------HHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHH------------------------------HHHHHH
Confidence            4566666777777777777777777777666544321   1111                              224444


Q ss_pred             HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375          254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL  323 (444)
Q Consensus       254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l  323 (444)
                      -|+.+|.+.|..     ..+++.+|.+|..++...+........+++|..+|++|+ ..+|+|....-.|
T Consensus        57 K~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv-~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   57 KFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV-DEDPNNELYRKSL  120 (186)
T ss_dssp             HHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHH
T ss_pred             HHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHH
Confidence            455555543322     345666666666655433333334466899999999999 9999997544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.39  E-value=0.00025  Score=74.43  Aligned_cols=232  Identities=13%  Similarity=0.031  Sum_probs=154.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHH
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVA  214 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A  214 (444)
                      .+++.+|....     +.++++.|+.+-+....|..+.++|+.++|..+++..-..-+++....-.+-.+|.++|++++|
T Consensus        22 ~~qfkkal~~~-----~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   22 SSQFKKALAKL-----GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hHHHHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            45778888764     6678999999999999999999999999999999888777788888888999999999999999


Q ss_pred             HHHHHHhhcCCCCCCChHHH--HHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhch
Q 013375          215 LNLLRTLLSGSEDPKCLPAL--LIASKICG-EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD  291 (444)
Q Consensus       215 ~~~~~~al~~~~~P~~~~a~--~~~~~~~~-~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~  291 (444)
                      ..+|++++  ..+|+ .+..  ++++.+-- ....+-+.|+..|+    ..|.++    ..-|.......  ++..+...
T Consensus        97 ~~~Ye~~~--~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~----yyfWsV~Slil--qs~~~~~~  163 (932)
T KOG2053|consen   97 VHLYERAN--QKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRA----YYFWSVISLIL--QSIFSENE  163 (932)
T ss_pred             HHHHHHHH--hhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCccc----chHHHHHHHHH--HhccCCcc
Confidence            99999999  89998 3322  22222210 00112234555554    233332    11233332222  22221111


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHH-HHHhhcCCCChHHH-HHHHHHHHHccC
Q 013375          292 FDRATRQAKALQALVSAARSTN-MRDLSILYRL-SLEYAEQRKLNAAHYYAK-MLLKLEGGSNLKGW-LLMARILSAQKR  367 (444)
Q Consensus       292 ~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~l-g~~~~~~g~~~~A~~~~~-~al~l~P~~~~~~~-~~la~~l~~~g~  367 (444)
                      ....--..-|..++++.+ +.. +-...+-..| -.++..+|++++|...+. ...+..+..+ ... +.....+...++
T Consensus       164 ~~~~i~l~LA~~m~~~~l-~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~-~~l~~~~~dllk~l~~  241 (932)
T KOG2053|consen  164 LLDPILLALAEKMVQKLL-EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN-LYLENKKLDLLKLLNR  241 (932)
T ss_pred             cccchhHHHHHHHHHHHh-ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHhcC
Confidence            001112356778888888 666 4333322222 346677899999999994 4444455543 444 345667778899


Q ss_pred             HHHHHHHHHHHHhhcCCCCcH
Q 013375          368 YEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       368 ~~eA~~~~~~al~~~P~~~~~  388 (444)
                      +.+-.+...+++...|  |+.
T Consensus       242 w~~l~~l~~~Ll~k~~--Ddy  260 (932)
T KOG2053|consen  242 WQELFELSSRLLEKGN--DDY  260 (932)
T ss_pred             hHHHHHHHHHHHHhCC--cch
Confidence            9999999999999999  763

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=5.5e-06  Score=72.25  Aligned_cols=100  Identities=14%  Similarity=0.068  Sum_probs=87.8

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLS-----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY  368 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~  368 (444)
                      ..|.+++|..-|..|+ .+-|.-+.     .+.|.|.++.+++..+.|+..+.+|++|+|.+ ..++...+.+|.+..+|
T Consensus       107 ~ngdyeeA~skY~~Al-e~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  107 KNGDYEEANSKYQEAL-ESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEKMEKY  184 (271)
T ss_pred             hcccHHHHHHHHHHHH-HhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHhhhhH
Confidence            3578999999999999 99998764     45688999999999999999999999999999 49999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          369 EDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      ++|+.-|.+.++.+|  ..-++.-....+
T Consensus       185 eealeDyKki~E~dP--s~~ear~~i~rl  211 (271)
T KOG4234|consen  185 EEALEDYKKILESDP--SRREAREAIARL  211 (271)
T ss_pred             HHHHHHHHHHHHhCc--chHHHHHHHHhc
Confidence            999999999999999  555555544443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.37  E-value=4.2e-06  Score=67.92  Aligned_cols=97  Identities=19%  Similarity=0.097  Sum_probs=85.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHH
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQL  399 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~--~~~~~~~~la~~~~  399 (444)
                      .-|.++.+.|++++|++.|.+++.+-|+.+ .+|++.+..+.-+|+.++|+.-+++|+++..+.  .--.++..+|.++.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~ra-SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERA-SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccch-HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            346788999999999999999999999995 999999999999999999999999999997510  12467889999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHH
Q 013375          400 VQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       400 ~~g~~~~A~~~~~~al~l~~  419 (444)
                      .+|+.+.|...|+.+-++--
T Consensus       127 l~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCC
Confidence            99999999999999877643

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.35  E-value=8.6e-06  Score=75.03  Aligned_cols=96  Identities=16%  Similarity=0.056  Sum_probs=86.3

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHH
Q 013375          295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYE  369 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~  369 (444)
                      .|+|.+|...|..-+ +.-|++   +.++|.||.+++.+|++++|...|..+++-.|+++  .++++.+|.++..+|+.+
T Consensus       154 sgdy~~A~~~F~~fi-~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         154 SGDYAEAEQAFQAFI-KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             cCCHHHHHHHHHHHH-HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            467999999999999 999987   57999999999999999999999999999998873  278999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          370 DAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       370 eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      +|-..|+++++..|  +...+...
T Consensus       233 ~A~atl~qv~k~YP--~t~aA~~A  254 (262)
T COG1729         233 EACATLQQVIKRYP--GTDAAKLA  254 (262)
T ss_pred             HHHHHHHHHHHHCC--CCHHHHHH
Confidence            99999999999999  66554443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.34  E-value=9.2e-06  Score=67.91  Aligned_cols=92  Identities=10%  Similarity=0.025  Sum_probs=81.6

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHccC-
Q 013375          294 RATRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKR-  367 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~l~~~g~-  367 (444)
                      +.|++++|++.|+.+. ..-|..+   .+.+.||.+|...|++++|+..+++.++++|.|+-  -+++..|.+.+.+.. 
T Consensus        22 ~~~~Y~~A~~~le~L~-~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~  100 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALD-TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG  100 (142)
T ss_pred             HhCCHHHHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence            3578999999999999 8888764   68899999999999999999999999999999851  478889999998877 


Q ss_pred             --------------HHHHHHHHHHHHhhcCCCCcH
Q 013375          368 --------------YEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       368 --------------~~eA~~~~~~al~~~P~~~~~  388 (444)
                                    ..+|...|++.+...|  ++.
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP--~S~  133 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYP--NSE  133 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCc--CCh
Confidence                          8899999999999999  553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.32  E-value=0.00016  Score=66.25  Aligned_cols=72  Identities=21%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA  233 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a  233 (444)
                      .++.++.-|......|++++|+..|+++....|.+   ..+...++-++++.+++++|+...++=+  ++.|+++.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi--~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI--RLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCCCCCh
Confidence            45678888888889999999999999888776664   4678888999999999999999999999  888887654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.8e-06  Score=77.16  Aligned_cols=101  Identities=15%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      ..+++.|+.+|.+++ .++|..+..+-|.+.++.+.++++.....+++|+.++|+. +.+++.+|..+.....|++|+..
T Consensus        23 ~k~y~~ai~~y~raI-~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~~l~s~~~~eaI~~  100 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAI-CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQWLLQSKGYDEAIKV  100 (284)
T ss_pred             hhhhchHHHHHHHHH-hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHHHHhhccccHHHHH
Confidence            457899999999999 9999999999999999999999999999999999999998 69999999999999999999999


Q ss_pred             HHHHHhhc---CCCCcHHHHHHHHHH
Q 013375          375 LNAALDQT---GKWEQGELLRTKAKV  397 (444)
Q Consensus       375 ~~~al~~~---P~~~~~~~~~~la~~  397 (444)
                      +.+|..+.   |-+.-..++..+-.+
T Consensus       101 Lqra~sl~r~~~~~~~~di~~~L~~a  126 (284)
T KOG4642|consen  101 LQRAYSLLREQPFTFGDDIPKALRDA  126 (284)
T ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHH
Confidence            99996442   310224555555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.27  E-value=8.4e-07  Score=55.41  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=22.4

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013375          305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH  337 (444)
Q Consensus       305 ~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~  337 (444)
                      |++++ +++|+|+.+|++||.+|...|++++|+
T Consensus         2 y~kAi-e~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAI-ELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHH-HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56677 777777777777777777777777665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.27  E-value=1.6e-06  Score=57.78  Aligned_cols=43  Identities=16%  Similarity=0.259  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR  360 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~  360 (444)
                      |.+++.+|.+|.++|++++|++.|+++++.+|+++ .+|..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP-EAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-HHHHHhhh
Confidence            34566677777777777777777777777777763 66666653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.27  E-value=0.00027  Score=64.75  Aligned_cols=190  Identities=14%  Similarity=0.002  Sum_probs=124.0

Q ss_pred             CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375          193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM  269 (444)
Q Consensus       193 ~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~  269 (444)
                      ..+..||+-|...++.|++++|+..|+...  ...|..+   .+.+.++...+. .+++++|+...++.+...|.++.  
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n--  106 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPN--  106 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCC--
Confidence            457889999999999999999999999999  8888865   456666666554 68999999999999998887654  


Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      ..-+++..|.++...-.....+   .....+|+..|++.+ +.-|++.-+-.....+           ..++..+     
T Consensus       107 ~dY~~YlkgLs~~~~i~~~~rD---q~~~~~A~~~f~~~i-~ryPnS~Ya~dA~~~i-----------~~~~d~L-----  166 (254)
T COG4105         107 ADYAYYLKGLSYFFQIDDVTRD---QSAARAAFAAFKELV-QRYPNSRYAPDAKARI-----------VKLNDAL-----  166 (254)
T ss_pred             hhHHHHHHHHHHhccCCccccC---HHHHHHHHHHHHHHH-HHCCCCcchhhHHHHH-----------HHHHHHH-----
Confidence            2467888888866543222111   123468999999999 9999986432211111           0111110     


Q ss_pred             CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHhCCHHHHHH
Q 013375          350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVE  409 (444)
Q Consensus       350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~la~~~~~~g~~~~A~~  409 (444)
                        +.-=+..|..|.+.|.+..|+.-++..++..|+. .-.+++..+..++..+|-.++|-.
T Consensus       167 --A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~  225 (254)
T COG4105         167 --AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK  225 (254)
T ss_pred             --HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence              1222335556666666666666666666655520 124555556666666666665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.27  E-value=1.2e-06  Score=58.37  Aligned_cols=42  Identities=17%  Similarity=0.099  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 013375          162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL  203 (444)
Q Consensus       162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  203 (444)
                      +++..+|.+|...|++++|++.|+++++.+|+++++|..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            455566666666666666666666666666666666665553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.19  E-value=8.3e-07  Score=55.44  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHH
Q 013375          183 QIEELLPGIINRKERYHILALCYYGAGEDLVAL  215 (444)
Q Consensus       183 ~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~  215 (444)
                      +|+++|+++|+++.+|++||.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            478899999999999999999999999999886

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.18  E-value=0.00016  Score=71.61  Aligned_cols=189  Identities=17%  Similarity=0.113  Sum_probs=123.7

Q ss_pred             HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                      -.+..+.+.-++.-++||  .++|+...++..++.   ....-..||..+|+++++.-           -..+|....  
T Consensus       178 AWRERnp~aRIkaA~eAL--ei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAg-----------E~~lg~s~~--  239 (539)
T PF04184_consen  178 AWRERNPQARIKAAKEAL--EINPDCADAYILLAE---EEASTIVEAEELLRQAVKAG-----------EASLGKSQF--  239 (539)
T ss_pred             HHhcCCHHHHHHHHHHHH--HhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHH-----------HHhhchhhh--
Confidence            345567778888889999  899999998876643   23445789999999998831           122222111  


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHH
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARSTNMRDL--SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARI  361 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~  361 (444)
                                    .+....+-+.. ...+.++  -+...||.+..++|+.+||++.++..++.+|. +....+.+|-.+
T Consensus       240 --------------~~~~g~~~e~~-~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~  304 (539)
T PF04184_consen  240 --------------LQHHGHFWEAW-HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA  304 (539)
T ss_pred             --------------hhcccchhhhh-hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence                          11111122222 2233333  34467888888999999999999999888776 234678888888


Q ss_pred             HHHccCHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHHh-CC---------------HHHHHHHHHHHHHHHHhhhhh
Q 013375          362 LSAQKRYEDAETILNAALDQ-TGKWEQGELLRTKAKVQLVQ-GQ---------------LKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       362 l~~~g~~~eA~~~~~~al~~-~P~~~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~l~~~~~~~  424 (444)
                      +...++|.++...+.+-=+. -|  ..+.+.|..+.+..+. |+               ...|+++.++|++.+|...+=
T Consensus       305 LLelq~Yad~q~lL~kYdDi~lp--kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  305 LLELQAYADVQALLAKYDDISLP--KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             HHhcCCHHHHHHHHHHhccccCC--chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            99999999988888775333 25  5666666666654331 11               134678889999988877764


Q ss_pred             ccCc
Q 013375          425 FSSD  428 (444)
Q Consensus       425 ~~~~  428 (444)
                      ....
T Consensus       383 LLe~  386 (539)
T PF04184_consen  383 LLEM  386 (539)
T ss_pred             hhcc
Confidence            3333

The molecular function of this protein is uncertain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=0.001  Score=69.35  Aligned_cols=191  Identities=14%  Similarity=0.028  Sum_probs=115.0

Q ss_pred             HHHHHHHhhhhcccchHHHHHHHH--------HHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013375           11 EAIFLKAKCLQGLGRFKEAAQSCK--------VILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET   82 (444)
Q Consensus        11 ~~~~~~g~~~~~~g~~~~A~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA   82 (444)
                      ..|-+.+...-+..|++-|--..-        +++...++     .++..+             ...+.+..+.|.+++|
T Consensus       758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-----~~~e~e-------------akvAvLAieLgMlEeA  819 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-----NGEEDE-------------AKVAVLAIELGMLEEA  819 (1416)
T ss_pred             HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-----CCcchh-------------hHHHHHHHHHhhHHHH
Confidence            357777888888888776632221        23333211     122111             1223456789999999


Q ss_pred             HHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013375           83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPS  162 (444)
Q Consensus        83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~  162 (444)
                      +..|++.=+.    |      +.++                       +|-.+|.+++|.++...  .+.     -.-..
T Consensus       820 ~~lYr~ckR~----D------LlNK-----------------------lyQs~g~w~eA~eiAE~--~DR-----iHLr~  859 (1416)
T KOG3617|consen  820 LILYRQCKRY----D------LLNK-----------------------LYQSQGMWSEAFEIAET--KDR-----IHLRN  859 (1416)
T ss_pred             HHHHHHHHHH----H------HHHH-----------------------HHHhcccHHHHHHHHhh--ccc-----eehhh
Confidence            9999998664    3      1111                       23335677787764210  011     11234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh----------cCCCCCC----------HHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEEL----------LPGIINR----------KERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~a----------l~~~p~~----------~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .|++.+.-+...++.+.|+++|+++          |.-+|..          +..|---|.-+...|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            6777777777888888888888776          3334433          3344456777778888888888887754


Q ss_pred             cC-------------------CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013375          223 SG-------------------SEDPKCLPALLIASKICGEYPDLAEEGATFASRALE  260 (444)
Q Consensus       223 ~~-------------------~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~  260 (444)
                      ..                   .....+..+.+.+++. |...|++.+|+.+|.|+-.
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~-YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM-YENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH
Confidence            10                   1223345566667776 4677889999999887644

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.16  E-value=0.0084  Score=57.89  Aligned_cols=256  Identities=16%  Similarity=0.074  Sum_probs=180.0

Q ss_pred             HHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH
Q 013375           71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR  150 (444)
Q Consensus        71 ~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~  150 (444)
                      ..-+-.|++++|-.-|+-++.     ||+... +  .+-.+++..                 ...|..+.|+..-     
T Consensus       128 Qaal~eG~~~~Ar~kfeAMl~-----dPEtRl-l--GLRgLyleA-----------------qr~GareaAr~yA-----  177 (531)
T COG3898         128 QAALLEGDYEDARKKFEAMLD-----DPETRL-L--GLRGLYLEA-----------------QRLGAREAARHYA-----  177 (531)
T ss_pred             HHHHhcCchHHHHHHHHHHhc-----ChHHHH-H--hHHHHHHHH-----------------HhcccHHHHHHHH-----
Confidence            455679999999999999998     665421 0  011111111                 1245566666653     


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC---CCCCHH-----HHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG---IINRKE-----RYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~---~p~~~~-----~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      +.+-.+.|.-++++.-.-...+..|+++.|+...+...+.   .++-.+     .....+..+.. -+...|...-.+++
T Consensus       178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~  256 (531)
T COG3898         178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEAN  256 (531)
T ss_pred             HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHh
Confidence            3445677999999998888999999999999988766533   333222     12222333333 35788999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH
Q 013375          223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL  302 (444)
Q Consensus       223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~  302 (444)
                        ++.|+...+-+..+..++. .|+..++-..++.+-+. .|+++  ....|..     .+.|+..   ..   +    +
T Consensus       257 --KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~-ePHP~--ia~lY~~-----ar~gdta---~d---R----l  315 (531)
T COG3898         257 --KLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKA-EPHPD--IALLYVR-----ARSGDTA---LD---R----L  315 (531)
T ss_pred             --hcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhc-CCChH--HHHHHHH-----hcCCCcH---HH---H----H
Confidence              8999999888877777654 67888999999999884 45542  1111111     1111110   01   1    1


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHhh
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQ  381 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-g~~~eA~~~~~~al~~  381 (444)
                      +-.++.. .+.|+|.+..+..+..-...|++..|...-+.+..+.|..  .++.+|+.|-... |+-.+...++-++++-
T Consensus       316 kRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         316 KRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            2234455 7899999999999999999999999999999999999984  8899999998777 9999999999999964

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.13  E-value=0.0007  Score=71.20  Aligned_cols=228  Identities=17%  Similarity=0.081  Sum_probs=153.2

Q ss_pred             HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013375          172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG  251 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA  251 (444)
                      ...+++.+|..-..+.++..|+.+-+..--|.++.++|+.++|..+++..-  ...|++...+- ....||+..++.++|
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~--~~~~~D~~tLq-~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALY--GLKGTDDLTLQ-FLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhc--cCCCCchHHHH-HHHHHHHHHhhhhHH
Confidence            346889999999999999999999999999999999999999997776655  56666554433 345678999999999


Q ss_pred             HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHc
Q 013375          252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR-LSLEYAEQ  330 (444)
Q Consensus       252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~-lg~~~~~~  330 (444)
                      ..+|+++++..|. .+     -.+.+=++|.+.+.+       ..+...|++.|+     .-|.++-.+.+ ...++...
T Consensus        97 ~~~Ye~~~~~~P~-ee-----ll~~lFmayvR~~~y-------k~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EE-----LLYHLFMAYVREKSY-------KKQQKAALQLYK-----NFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             HHHHHHHHhhCCc-HH-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhc
Confidence            9999999997765 21     122223344333221       123345666664     45777754444 44444433


Q ss_pred             CC---------HHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHHHH
Q 013375          331 RK---------LNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAAL-DQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       331 g~---------~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al-~~~P~~~~~~~~~~la~~~~  399 (444)
                      ..         ..-|.+.+++.++.. +-....=....-.++..+|++++|..++..-+ +..++ .+...-......+.
T Consensus       159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~~~dllk  237 (932)
T KOG2053|consen  159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS-ANLYLENKKLDLLK  237 (932)
T ss_pred             cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHH
Confidence            22         234777888888877 43321222334567888999999999994433 34441 44444445566777


Q ss_pred             HhCCHHHHHHHHHHHHHHHHhh
Q 013375          400 VQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       400 ~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ..+++++=.+...++++-.+++
T Consensus       238 ~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  238 LLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HhcChHHHHHHHHHHHHhCCcc
Confidence            7777777777777777766665

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1e-05  Score=72.53  Aligned_cols=103  Identities=14%  Similarity=0.005  Sum_probs=94.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375          323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG  402 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g  402 (444)
                      -|.-+...++|..|+..|.+|+.++|..+ ..|.+.+.++++..+++.......+|+++.|  +....++.+|..+....
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~-~Y~tnralchlk~~~~~~v~~dcrralql~~--N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVA-SYYTNRALCHLKLKHWEPVEEDCRRALQLDP--NLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcc-hhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--HHHHHHHHHHHHHHhhc
Confidence            35566777899999999999999999984 9999999999999999999999999999999  89999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhccCc
Q 013375          403 QLKGAVETYTHLLAALQVQTKTFSSD  428 (444)
Q Consensus       403 ~~~~A~~~~~~al~l~~~~~~~~~~~  428 (444)
                      .+++|+..+.++.++...+.-+.+-+
T Consensus        93 ~~~eaI~~Lqra~sl~r~~~~~~~~d  118 (284)
T KOG4642|consen   93 GYDEAIKVLQRAYSLLREQPFTFGDD  118 (284)
T ss_pred             cccHHHHHHHHHHHHHhcCCCCCcch
Confidence            99999999999999988777666554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.07  E-value=0.00015  Score=69.14  Aligned_cols=125  Identities=11%  Similarity=0.047  Sum_probs=105.6

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      .+..++|...|++|. +..+-+..+|...|.+-.. .++.+.|.+.|+++++.-|.+ ...|......+...|+.+.|..
T Consensus        14 ~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~~~~d~~~aR~   91 (280)
T PF05843_consen   14 TEGIEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLIKLNDINNARA   91 (280)
T ss_dssp             HHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             hCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhCcHHHHHH
Confidence            445789999999999 8888899999999999777 566666999999999999999 5999999999999999999999


Q ss_pred             HHHHHHhhcCCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          374 ILNAALDQTGKWE-QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       374 ~~~~al~~~P~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      .|++++..-|... ...+|..........|+.+.....++++.++.|+.
T Consensus        92 lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   92 LFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            9999998877211 23688888999999999999999999999998873

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.00066  Score=62.01  Aligned_cols=127  Identities=16%  Similarity=0.116  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCC-CChHHHHHHHHHHHHccCHH
Q 013375          296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGG-SNLKGWLLMARILSAQKRYE  369 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~-~~~~~~~~la~~l~~~g~~~  369 (444)
                      +.|.-.+.++.+++ ..+ |.+|...-.||.+-.+.|+.+.|..+|++.-+    ++.- +......+.+.++..+++|.
T Consensus       191 kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             hhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            35667888999999 777 78888888999999999999999999995543    3321 11256677888888899999


Q ss_pred             HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       370 eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      +|...+++.+..+|  .++.+-.++|.++.-+|+..+|++..+.++.+.|.+.-+.
T Consensus       270 ~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e  323 (366)
T KOG2796|consen  270 EAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE  323 (366)
T ss_pred             HHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence            99999999999999  8889999999999999999999999999998888765543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.04  E-value=8.1e-06  Score=50.89  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      .+|+++|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46666777777777777777777777777665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.00024  Score=69.92  Aligned_cols=107  Identities=14%  Similarity=0.063  Sum_probs=83.1

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHhhcC---------C---
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIE------W--DPSILDHLSFAFSIAGDLSSLATQIEELLP---------G---  190 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p------~--~~~~~~~lg~~l~~~g~~~~A~~~~~~al~---------~---  190 (444)
                      ++...|++..|..+++..    -+...|      .  .--+|+++|-++.+.|.|..++..|.+|++         +   
T Consensus       249 ~eY~~gn~~kA~KlL~~s----ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~  324 (696)
T KOG2471|consen  249 LEYAHGNHPKAMKLLLVS----NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA  324 (696)
T ss_pred             HHHHhcchHHHHHHHHhc----ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            445578888888877433    112222      2  223678999999999999999999999985         1   


Q ss_pred             ------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013375          191 ------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE  243 (444)
Q Consensus       191 ------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~  243 (444)
                            ....-+..|+.|..|...||+-.|.++|.+++  +..-.+|..|+.++..|..
T Consensus       325 ~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av--~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  325 KTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV--HVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             cceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH--HHHhcCcHHHHHHHHHHHH
Confidence                  12356889999999999999999999999999  7888888899888877753

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.99  E-value=0.0017  Score=63.42  Aligned_cols=177  Identities=16%  Similarity=0.079  Sum_probs=120.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHH---CCCchHHHHHHHHhhcCCCCCCChH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~---~g~~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      ++++..++-..|....+|+.=+...+..-.+    -++.+...+.+|.++.+   .|+.++|+..+..++. ...+.+++
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d  218 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPD  218 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChH
Confidence            4566778888899999999999888887776    56678889999999999   9999999999999663 56667777


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST  312 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~  312 (444)
                      .+-..|+++-.             ..++ ....+                            ....++|+..|+++- ++
T Consensus       219 ~~gL~GRIyKD-------------~~~~-s~~~d----------------------------~~~ldkAi~~Y~kgF-e~  255 (374)
T PF13281_consen  219 TLGLLGRIYKD-------------LFLE-SNFTD----------------------------RESLDKAIEWYRKGF-EI  255 (374)
T ss_pred             HHHHHHHHHHH-------------HHHH-cCccc----------------------------hHHHHHHHHHHHHHH-cC
Confidence            77767766421             0111 00000                            123688999999999 99


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh----------cCCCChHHHH--HHHHHHHHccCHHHHHHHHHHHH
Q 013375          313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL-KL----------EGGSNLKGWL--LMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l----------~P~~~~~~~~--~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      +|+.. .-.|++.++...|...+.....++.. .+          .+.  ...|.  .++.+..-.|++++|+.++++++
T Consensus       256 ~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~--~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  256 EPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM--QDYWDVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             Ccccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            96543 34455666666665443332222222 11          122  13443  45556666799999999999999


Q ss_pred             hhcC
Q 013375          380 DQTG  383 (444)
Q Consensus       380 ~~~P  383 (444)
                      ...|
T Consensus       333 ~l~~  336 (374)
T PF13281_consen  333 KLKP  336 (374)
T ss_pred             hcCC
Confidence            9988

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.6e-05  Score=49.46  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3566667777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.91  E-value=0.00065  Score=67.48  Aligned_cols=217  Identities=14%  Similarity=0.011  Sum_probs=136.9

Q ss_pred             hcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013375          173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA  252 (444)
Q Consensus       173 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~  252 (444)
                      +..+++.-++.-.+||+++|+.+++|.-||.-  ...-..+|+..|++++  +.......    .... ....|..    
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAv--kAgE~~lg----~s~~-~~~~g~~----  246 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAV--KAGEASLG----KSQF-LQHHGHF----  246 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHH--HHHHHhhc----hhhh-hhcccch----
Confidence            45677888888899999999999999877653  2345688999999999  33222110    0000 0011111    


Q ss_pred             HHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q 013375          253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ  330 (444)
Q Consensus       253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~  330 (444)
                         -..+.   ..+......+...+++|..+.           |+.+||++.|+..+ +..|.  +..++++|-.++.++
T Consensus       247 ---~e~~~---~Rdt~~~~y~KrRLAmCarkl-----------Gr~~EAIk~~rdLl-ke~p~~~~l~IrenLie~LLel  308 (539)
T PF04184_consen  247 ---WEAWH---RRDTNVLVYAKRRLAMCARKL-----------GRLREAIKMFRDLL-KEFPNLDNLNIRENLIEALLEL  308 (539)
T ss_pred             ---hhhhh---ccccchhhhhHHHHHHHHHHh-----------CChHHHHHHHHHHH-hhCCccchhhHHHHHHHHHHhc
Confidence               00110   001111234556678887654           67899999999999 87775  466899999999999


Q ss_pred             CCHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHc-cC---------------HHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          331 RKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQ-KR---------------YEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       331 g~~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~-g~---------------~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      +++.++...+.|-=.+. |+. +...+.-+.+..+. ++               -..|++.+.+|++.+|  ..+..+.-
T Consensus       309 q~Yad~q~lL~kYdDi~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP--HVp~YLLe  385 (539)
T PF04184_consen  309 QAYADVQALLAKYDDISLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP--HVPKYLLE  385 (539)
T ss_pred             CCHHHHHHHHHHhccccCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC--CCchhhhc
Confidence            99999999999975443 554 23333333332221 11               2357899999999999  44332221


Q ss_pred             HH------HHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          394 KA------KVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       394 la------~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      +=      .-..+.|+ .||+.+---.+..|+.-++.
T Consensus       386 ~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGA  421 (539)
T PF04184_consen  386 MKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGA  421 (539)
T ss_pred             cCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhH
Confidence            10      01234564 88888888888888866653

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00011  Score=66.12  Aligned_cols=110  Identities=12%  Similarity=0.011  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCC---------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSN---------LKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~---------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      +-.-|.-+++.|++.+|...|+.|+.        -.|..+         ...+.+...++...|+|-+++..+...|...
T Consensus       181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~  260 (329)
T KOG0545|consen  181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH  260 (329)
T ss_pred             HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            34445555666666666666665543        223321         2445667777777788888888888888888


Q ss_pred             CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013375          383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF  431 (444)
Q Consensus       383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  431 (444)
                      |  +|..++|.+|++....=+.++|.+.+.++|++.|.-..+-+.+.++
T Consensus       261 ~--~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~  307 (329)
T KOG0545|consen  261 P--GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRL  307 (329)
T ss_pred             C--chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence            8  7888888888888777788888888888888887777665555554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.001  Score=69.28  Aligned_cols=227  Identities=17%  Similarity=0.065  Sum_probs=142.3

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH------------HHhhcCCCCCCHHH
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQ------------IEELLPGIINRKER  197 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~------------~~~al~~~p~~~~~  197 (444)
                      ++|...|..|+|....        -.  -....+|.+++....+..+.+-|--+            ++++.+ +|++.+ 
T Consensus       736 SfyvtiG~MD~AfksI--------~~--IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~e-  803 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSI--------QF--IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDE-  803 (1416)
T ss_pred             eEEEEeccHHHHHHHH--------HH--HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchh-
Confidence            4667778888885432        11  13456899999888877777666544            444444 344444 


Q ss_pred             HHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013375          198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL  277 (444)
Q Consensus       198 ~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l  277 (444)
                       -..|.+-..+|-.++|+..|+++-  +.|         +.+-.|+..|++++|.+..+.-=.       ...-..|++.
T Consensus       804 -akvAvLAieLgMlEeA~~lYr~ck--R~D---------LlNKlyQs~g~w~eA~eiAE~~DR-------iHLr~Tyy~y  864 (1416)
T KOG3617|consen  804 -AKVAVLAIELGMLEEALILYRQCK--RYD---------LLNKLYQSQGMWSEAFEIAETKDR-------IHLRNTYYNY  864 (1416)
T ss_pred             -hHHHHHHHHHhhHHHHHHHHHHHH--HHH---------HHHHHHHhcccHHHHHHHHhhccc-------eehhhhHHHH
Confidence             346778889999999999999998  322         112235667888887766531111       0011223332


Q ss_pred             hhhhhhhhhhhhchHHHHhhHHHHHHHHHHH----------HHhhC----------CCCHHHHHHHHHHHHHcCCHHHHH
Q 013375          278 GISLSAQSKVAITDFDRATRQAKALQALVSA----------ARSTN----------MRDLSILYRLSLEYAEQRKLNAAH  337 (444)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a----------l~~~~----------P~~~~a~~~lg~~~~~~g~~~~A~  337 (444)
                      +.-+...           ++.+.|++.|+++          + .-+          ..|+..|-.-|.-+...|+.+.|+
T Consensus       865 A~~Lear-----------~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl  932 (1416)
T KOG3617|consen  865 AKYLEAR-----------RDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL  932 (1416)
T ss_pred             HHHHHhh-----------ccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence            2222211           2233444444332          1 112          234556666677777889999999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       338 ~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      .+|..|         .-|+.+..+..-+|+.++|-.+-+     ..  .|..+-|++|..|...|++.+|+..|.+|-
T Consensus       933 ~~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~-----es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  933 SFYSSA---------KDYFSMVRIKCIQGKTDKAARIAE-----ES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHh---------hhhhhheeeEeeccCchHHHHHHH-----hc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            999876         345556777777888888865543     23  567788999999999999999998776653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.0012  Score=62.28  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHhh-CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          298 QAKALQALVSAARST-NMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       298 ~~eA~~~~~~al~~~-~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      .+.-...+++++ .. +|+-|-   +.-.++..+.+.|-|++|++..++++++||.+ .-+.+.++.++...||++|+.+
T Consensus       153 ~~~~k~ai~kIi-p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~e  230 (491)
T KOG2610|consen  153 QIGKKNAIEKII-PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKE  230 (491)
T ss_pred             hhhhhhHHHHhc-cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHH
Confidence            445556666666 44 555532   33345556667777777777777777777776 3666777777777777777777


Q ss_pred             HHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          374 ILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       374 ~~~~al~~~P~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      ...+--..-.  +    ...-|++-|..+.+-+.++.|++.|.+
T Consensus       231 FM~~ted~Wr--~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  231 FMYKTEDDWR--QSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHhcccchh--hhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            6654422111  0    012245566666666777777777765

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00022  Score=64.39  Aligned_cols=122  Identities=16%  Similarity=0.070  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013375           63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI  142 (444)
Q Consensus        63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi  142 (444)
                      ..++..-|+-+++.|+++||++.|+.|+.+   +         .++   .+..    .|              |.. |=+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~---l---------~~L---~lkE----kP--------------~e~-eW~  223 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIIC---L---------RNL---QLKE----KP--------------GEP-EWL  223 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHH---H---------HHH---Hhcc----CC--------------CCh-HHH
Confidence            356777788889999999999999999887   0         111   0110    01              000 111


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .+            +......+.+...++...|++-++++....+|...|+|..++|..|.+....=+..+|..-|.++|
T Consensus       224 eL------------dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL  291 (329)
T KOG0545|consen  224 EL------------DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL  291 (329)
T ss_pred             HH------------HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            11            011233677888899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChH
Q 013375          223 SGSEDPKCLP  232 (444)
Q Consensus       223 ~~~~~P~~~~  232 (444)
                        .++|.-..
T Consensus       292 --~ldpslas  299 (329)
T KOG0545|consen  292 --ELDPSLAS  299 (329)
T ss_pred             --hcChhhHH
Confidence              89996443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.77  E-value=3.6e-05  Score=75.79  Aligned_cols=94  Identities=12%  Similarity=0.029  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      +.++.|+..|.+|+ +++|+++..+-+.+.++.+.+++..|+.-+.+|++++|.. ..+|+..|.+.++.+++.+|+..+
T Consensus        18 ~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~~~~A~~~l   95 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGEFKKALLDL   95 (476)
T ss_pred             chHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHHHHHHHHHH
Confidence            56899999999999 9999999999999999999999999999999999999999 599999999999999999999999


Q ss_pred             HHHHhhcCCCCcHHHHHH
Q 013375          376 NAALDQTGKWEQGELLRT  393 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~  393 (444)
                      ++...+.|  ++..+...
T Consensus        96 ~~~~~l~P--nd~~~~r~  111 (476)
T KOG0376|consen   96 EKVKKLAP--NDPDATRK  111 (476)
T ss_pred             HHhhhcCc--CcHHHHHH
Confidence            99999999  66655443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.75  E-value=6.2e-05  Score=46.79  Aligned_cols=31  Identities=16%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .+|.++|.++..+|++++|+.+|++|++++|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            5788888888888888888888888888888

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=3.3e-05  Score=47.95  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                      +++|+.+|.++..+|++++|+..|++++  .++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al--~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL--ELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHCcCC
Confidence            4567778888888888888888888888  777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.71  E-value=0.0017  Score=55.38  Aligned_cols=70  Identities=21%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      .+...++..+...|++++|+..+++++..+|  -+..+|..+-.++..+|+..+|+..|++......+.-+.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~  132 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI  132 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence            4556677888899999999999999999999  899999999999999999999999999998877755443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.68  E-value=0.06  Score=52.19  Aligned_cols=235  Identities=12%  Similarity=-0.018  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHH-HHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKER-YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC  241 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~  241 (444)
                      ++.+-+.+-.-.|+++.|..-|+..+.. |+.-.. .-.|=.--.+.|..+.|+.+-+++-  ...|.-+.+........
T Consensus       122 IhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa--~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         122 IHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAA--EKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH--hhccCCchHHHHHHHHH
Confidence            4444456666789999999999987753 332221 1112222345789999999999999  88998877664333222


Q ss_pred             hcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          242 GEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       242 ~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                       -..|+++.|+...+...+...-. +..-...+-..-+.+-...          ..+...|...-.+++ ++.|+-..+-
T Consensus       199 -~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l----------dadp~~Ar~~A~~a~-KL~pdlvPaa  266 (531)
T COG3898         199 -CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL----------DADPASARDDALEAN-KLAPDLVPAA  266 (531)
T ss_pred             -HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHh-hcCCccchHH
Confidence             23588999998887655432111 1111112211111111100          123455666666677 6777776666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcC--------------------------------CCChHHHHHHHHHHHHccCH
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEG--------------------------------GSNLKGWLLMARILSAQKRY  368 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P--------------------------------~~~~~~~~~la~~l~~~g~~  368 (444)
                      .--+..+.+.|++.++-..++.+-+..|                                ++ .+..+..+..-..-|+|
T Consensus       267 v~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn-aes~~~va~aAlda~e~  345 (531)
T COG3898         267 VVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNN-AESSLAVAEAALDAGEF  345 (531)
T ss_pred             HHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHhccch
Confidence            6666666666666666666665555555                                33 24444444444444555


Q ss_pred             HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Q 013375          369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLA  416 (444)
Q Consensus       369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  416 (444)
                      ..|..--+.+....|   ...++..++.+.... |+-.+.....-+++.
T Consensus       346 ~~ARa~Aeaa~r~~p---res~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         346 SAARAKAEAAAREAP---RESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHHHHhhhCc---hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            555555555555555   234444455554433 555555555555544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.68  E-value=0.0033  Score=64.45  Aligned_cols=192  Identities=15%  Similarity=0.045  Sum_probs=134.5

Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh--hHHHHHhhhhhhhhhhhhhchHHH
Q 013375          217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME--STANCLLGISLSAQSKVAITDFDR  294 (444)
Q Consensus       217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~--~~a~~~lg~~~~~~~~~~~~~~~~  294 (444)
                      .|.=++  .+=|....-.+.    .....|+-+.++..+.++.+ .+.-.-+.-  ....++.+....- +    .+. .
T Consensus       179 ~f~L~l--SlLPp~~~kll~----~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~-~----~~~-~  245 (468)
T PF10300_consen  179 LFNLVL--SLLPPKVLKLLS----FVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFL-G----IDG-E  245 (468)
T ss_pred             HHHHHH--HhCCHHHHHHHh----hcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHc-C----Ccc-c
Confidence            444555  455544322221    13456788899999988877 222111110  1112222221111 0    000 2


Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA  371 (444)
                      ....+.|.+.+.... +.-|+.+-.++..|.++...|++++|++.|++++....+.+   .-++.-+|+++..+.+|++|
T Consensus       246 ~~~~~~a~~lL~~~~-~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  246 DVPLEEAEELLEEML-KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            345788999999999 99999999999999999999999999999999986444321   24677899999999999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHhhhh
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQL-------KGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~l~~~~~~  423 (444)
                      ..++.+..+.+. |...-..|..|.++...|+.       ++|.+.++++-.+..+...
T Consensus       325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g  382 (468)
T PF10300_consen  325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG  382 (468)
T ss_pred             HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence            999999999765 45566778889999999999       8888888888877765333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.66  E-value=0.0038  Score=50.05  Aligned_cols=105  Identities=12%  Similarity=0.092  Sum_probs=75.0

Q ss_pred             HHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHh-----
Q 013375          319 ILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSN-----------LKGWLLMARILSAQKRYEDAETILNAALD-----  380 (444)
Q Consensus       319 a~~~lg~~--~~~~g~~~~A~~~~~~al~l~P~~~-----------~~~~~~la~~l~~~g~~~eA~~~~~~al~-----  380 (444)
                      +|..|+..  ...-|-+++|...|++|.+..-.-|           +-++-.|+..+..+|+|++++...+++|.     
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            44444333  3445889999999999988664311           34667888999999999999998888884     


Q ss_pred             --hcCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          381 --QTGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       381 --~~P~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                        ++.  |....|    +++|..+..+|+.++|+..|+.+-++...+.+..
T Consensus        89 GEL~q--deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~  137 (144)
T PF12968_consen   89 GELHQ--DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEM  137 (144)
T ss_dssp             --TTS--THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--
T ss_pred             ccccc--ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Confidence              444  554444    6899999999999999999999999988777643

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.64  E-value=3.3e-05  Score=76.06  Aligned_cols=98  Identities=9%  Similarity=-0.013  Sum_probs=90.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375          323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG  402 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g  402 (444)
                      -+.....-+.++.|+..|.||++++|++ +..+-+.+..+.+.+.|-.|+.-..+|++.+|  ....+|+.+|...+..+
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNC-AIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAVMALG   86 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcc-eeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHHHhHH
Confidence            3445556788999999999999999998 58999999999999999999999999999999  89999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhh
Q 013375          403 QLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       403 ~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ++.+|+..|+....+.|.+..
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHH
Confidence            999999999999999987765

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.00065  Score=62.02  Aligned_cols=139  Identities=10%  Similarity=-0.020  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHCCCchHHHHHHHHhhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHH
Q 013375          197 RYHILALCYYGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTAN  274 (444)
Q Consensus       197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~  274 (444)
                      +.|-+..++...|.|.-....+.+++  ..+ |..+...-.++++. .+-|+.+.|..+++++-+.... +.-+....++
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi--~~~~e~~p~L~s~Lgr~~-MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~  255 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVI--KYYPEQEPQLLSGLGRIS-MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL  255 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHH--HhCCcccHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence            45667888888999999999999999  566 55666666666665 4468888888888866542211 0001111222


Q ss_pred             HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      .+...++..           .+++.+|...|.+++ ..||.|+.+.++-|.++.-.|+..+|++..+.++...|..
T Consensus       256 ~n~a~i~lg-----------~nn~a~a~r~~~~i~-~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  256 MNSAFLHLG-----------QNNFAEAHRFFTEIL-RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhhhheec-----------ccchHHHHHHHhhcc-ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            222222221           245677777777777 7777777777777777777777777777777777777764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.0094  Score=55.74  Aligned_cols=135  Identities=18%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      .+.-..-+.-+...|++.+|...|..++...|++.++-..|+.+|...|+.+.|...+...=  .... ....+.     
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP--~~~~-~~~~~~-----  205 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP--LQAQ-DKAAHG-----  205 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc--ccch-hhHHHH-----
Confidence            33444556678889999999999999999999999999999999999999999988876533  1111 111110     


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                             ....++.+.++-. .|+                                     +..+++.+ ..||+|.++-
T Consensus       206 -------l~a~i~ll~qaa~-~~~-------------------------------------~~~l~~~~-aadPdd~~aa  239 (304)
T COG3118         206 -------LQAQIELLEQAAA-TPE-------------------------------------IQDLQRRL-AADPDDVEAA  239 (304)
T ss_pred             -------HHHHHHHHHHHhc-CCC-------------------------------------HHHHHHHH-HhCCCCHHHH
Confidence                   0111233333332 111                                     23455666 8899999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      +.+|..+...|+.++|++.+-..++.|-.
T Consensus       240 ~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         240 LALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            99999999999999999999888887654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0019  Score=60.33  Aligned_cols=116  Identities=17%  Similarity=0.036  Sum_probs=84.6

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHH-HH--HHHHHccCHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MA--RILSAQKRYEDA  371 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~-la--~~l~~~g~~~eA  371 (444)
                      .+++.+|...|+.++ +.+|++.++...++.+|...|+.++|...+...=.-..+   ..+.. .+  ..+.......+ 
T Consensus       147 ~e~~~~a~~~~~~al-~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll~qaa~~~~-  221 (304)
T COG3118         147 AEDFGEAAPLLKQAL-QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD---KAAHGLQAQIELLEQAAATPE-  221 (304)
T ss_pred             ccchhhHHHHHHHHH-HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh---hHHHHHHHHHHHHHHHhcCCC-
Confidence            467899999999999 999999999999999999999999999888764221221   22222 11  11111122221 


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      ...+++.+..+|  ++.++-+.+|..+...|+.++|++.+-..+..
T Consensus       222 ~~~l~~~~aadP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         222 IQDLQRRLAADP--DDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            234566677889  89999999999999999999998877666654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.013  Score=52.77  Aligned_cols=225  Identities=14%  Similarity=0.065  Sum_probs=130.9

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE  210 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~  210 (444)
                      +|...+++++|..++                   ..-|+.+...+++..|-..|.++              |.++.+.|.
T Consensus        23 lfgg~~k~eeAadl~-------------------~~Aan~yklaK~w~~AG~aflka--------------A~~h~k~~s   69 (288)
T KOG1586|consen   23 LFGGSNKYEEAAELY-------------------ERAANMYKLAKNWSAAGDAFLKA--------------ADLHLKAGS   69 (288)
T ss_pred             ccCCCcchHHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHhcCC
Confidence            444556777776653                   24566677777777776665543              444445554


Q ss_pred             chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhhhhhhhhhhhh
Q 013375          211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAI  289 (444)
Q Consensus       211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~  289 (444)
                      -.+|-..|-.+-                 -|++. .++.+|+.++++++++...-.. .+-+.-+..+|..|...     
T Consensus        70 khDaat~YveA~-----------------~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd-----  126 (288)
T KOG1586|consen   70 KHDAATTYVEAA-----------------NCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD-----  126 (288)
T ss_pred             chhHHHHHHHHH-----------------HHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh-----
Confidence            444444443333                 23442 4666777777777776432110 01112233445554332     


Q ss_pred             chHHHHhhHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh------HHHHH
Q 013375          290 TDFDRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLL  357 (444)
Q Consensus       290 ~~~~~~~~~~eA~~~~~~al~~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~~  357 (444)
                           ..++++||.+|+++. +.-..+-      ..+...+..-...++|.+|++.|++...-.-+++.      ..++.
T Consensus       127 -----l~d~ekaI~~YE~Aa-e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk  200 (288)
T KOG1586|consen  127 -----LQDFEKAIAHYEQAA-EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK  200 (288)
T ss_pred             -----HHHHHHHHHHHHHHH-HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence                 356889999999988 6544332      23344455566789999999999999887766531      23445


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Q 013375          358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV-----QGQLKGAVETYTHLLAA  417 (444)
Q Consensus       358 la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~l  417 (444)
                      -|.+++...+.-.+...+++-.+++|...+..=...+..+...     ...+.+....|..+..+
T Consensus       201 AgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrL  265 (288)
T KOG1586|consen  201 AGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRL  265 (288)
T ss_pred             HHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchH
Confidence            6788888889888999999999999943222222333333322     22344555555555333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.62  E-value=0.0019  Score=56.60  Aligned_cols=114  Identities=19%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHH
Q 013375          301 ALQALVSAARSTNMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       301 A~~~~~~al~~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      .+...++-+ .-+|.+..   +...++..+.+.|++++|+..++.++....|..  .-+-..|+.++..+|.+++|+..+
T Consensus        71 ~~~~~ekf~-~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          71 SIAAAEKFV-QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hHHHHHHHH-hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            334444444 55555543   235677788888999999999998887544431  134557888899999999998887


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  418 (444)
                      +..-+  +.| .+...-.+|.++...|+.++|...|++++...
T Consensus       150 ~t~~~--~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         150 DTIKE--ESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             hcccc--ccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            65432  211 23445678999999999999999999998875

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0058  Score=55.04  Aligned_cols=102  Identities=13%  Similarity=0.039  Sum_probs=67.4

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~  318 (444)
                      .++-..+.+++.||.+|+++-+-...+.. ..+.     ..|+.+.+.++    -..+++.+|+..|+++. ...-+|+.
T Consensus       121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees-~ssA-----NKC~lKvA~ya----a~leqY~~Ai~iyeqva-~~s~~n~L  189 (288)
T KOG1586|consen  121 EIYESDLQDFEKAIAHYEQAAEYYKGEES-VSSA-----NKCLLKVAQYA----AQLEQYSKAIDIYEQVA-RSSLDNNL  189 (288)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHcchhh-hhhH-----HHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHhccchH
Confidence            34334446778888888888875543211 1111     11222211111    23578999999999999 87777765


Q ss_pred             HH-------HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          319 IL-------YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       319 a~-------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                      .-       +.-|.++.-..+.-.+...+++-.+++|.+.
T Consensus       190 LKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            43       4557888877888889999999999999873

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.59  E-value=0.003  Score=60.25  Aligned_cols=42  Identities=2%  Similarity=-0.107  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      +|..+.....+.+..+.|..+|.+|+  +..+-...+|...|.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~--~~~~~~~~vy~~~A~~   44 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRAR--KDKRCTYHVYVAYALM   44 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCS-THHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Confidence            45555566666666666666666666  4444444444433333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.55  E-value=0.039  Score=52.79  Aligned_cols=169  Identities=15%  Similarity=0.069  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHCC----CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCCcch
Q 013375          196 ERYHILALCYYGAG----EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY---PDLAEEGATFASRALECLGDGCDQ  268 (444)
Q Consensus       196 ~~~~~la~~l~~~g----~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~---~~~~~eA~~~~~~al~~~~~~~~~  268 (444)
                      .+.+.+|..|..-.    +..+|...|+.+.    +..++.+.+.+|.++..-   ..+..+|..+|+++.+.-.+.  .
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a----~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--a  147 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA----ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--A  147 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHh----hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--H
Confidence            44444555544432    3455666666433    444555555555554332   225566677777666632111  0


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 013375          269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLL  344 (444)
Q Consensus       269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al  344 (444)
                        ..+.+.+|..|..-.....    -......|+..|.++. ...  ++.+.+++|.+|..    ..++.+|...|++|.
T Consensus       148 --~~~~~~l~~~~~~g~~~~~----~~~~~~~A~~~~~~aa-~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa  218 (292)
T COG0790         148 --ALAMYRLGLAYLSGLQALA----VAYDDKKALYLYRKAA-ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA  218 (292)
T ss_pred             --HHHHHHHHHHHHcChhhhc----ccHHHHhHHHHHHHHH-Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence              1225555555544210000    0012358999999998 666  88999999988865    358999999999999


Q ss_pred             hhcCCCChHHHHHHHHHHHHcc---------------CHHHHHHHHHHHHhhcC
Q 013375          345 KLEGGSNLKGWLLMARILSAQK---------------RYEDAETILNAALDQTG  383 (444)
Q Consensus       345 ~l~P~~~~~~~~~la~~l~~~g---------------~~~eA~~~~~~al~~~P  383 (444)
                      +...  . .+++.++ ++...|               +...|..++.++....+
T Consensus       219 ~~g~--~-~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  268 (292)
T COG0790         219 EQGD--G-AACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF  268 (292)
T ss_pred             HCCC--H-HHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence            8876  3 7788888 666666               44555555555554443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.55  E-value=0.065  Score=55.76  Aligned_cols=52  Identities=15%  Similarity=-0.005  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .|-.++.-|...|+|+.|.+.|.++=..        ..--..|-+.|+++.|.+.-.++.
T Consensus       767 yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~kla~e~~  818 (1636)
T KOG3616|consen  767 YYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFKLAEECH  818 (1636)
T ss_pred             cchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHHHHHHhc
Confidence            4445666667777777777776654322        112344556677777776666666

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.52  E-value=0.011  Score=59.33  Aligned_cols=239  Identities=12%  Similarity=0.057  Sum_probs=161.3

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHCCC--------------chHHHHHHHHhhcCCCCCCChHHHHHHHHHH--hcCCC
Q 013375          183 QIEELLPGIINRKERYHILALCYYGAGE--------------DLVALNLLRTLLSGSEDPKCLPALLIASKIC--GEYPD  246 (444)
Q Consensus       183 ~~~~al~~~p~~~~~~~~la~~l~~~g~--------------~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~--~~~~~  246 (444)
                      .|++++..-+-.++.|+..+.-+...++              .+++..+|++++. .+.-.+...++.++..-  ....+
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~~~~~~Ly~~~a~~eE~~~~~n  345 (656)
T KOG1914|consen  267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLLKENKLLYFALADYEESRYDDN  345 (656)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHhcccc
Confidence            4566666667788888887777777666              7889999999994 34444443333222211  01122


Q ss_pred             CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 013375          247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-SILYRLSL  325 (444)
Q Consensus       247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~-~a~~~lg~  325 (444)
                      ..+.--..+.+++.+...+.    ..+|..+=..-           .|..-...|...|.++- + ++... .++..-|.
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~----tLv~~~~mn~i-----------rR~eGlkaaR~iF~kaR-~-~~r~~hhVfVa~A~  408 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDL----TLVYCQYMNFI-----------RRAEGLKAARKIFKKAR-E-DKRTRHHVFVAAAL  408 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCC----ceehhHHHHHH-----------HHhhhHHHHHHHHHHHh-h-ccCCcchhhHHHHH
Confidence            35556677788887543332    12222211110           12233567788888886 4 34333 55544443


Q ss_pred             H-HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhC
Q 013375          326 E-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQG  402 (444)
Q Consensus       326 ~-~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g  402 (444)
                      . |.-+++.+-|.+.|+-.+...||.+ ..-+.....+...++-..|...|++++..  .|+ ...++|-..-.-...-|
T Consensus       409 mEy~cskD~~~AfrIFeLGLkkf~d~p-~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~-ks~~Iw~r~l~yES~vG  486 (656)
T KOG1914|consen  409 MEYYCSKDKETAFRIFELGLKKFGDSP-EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD-KSKEIWDRMLEYESNVG  486 (656)
T ss_pred             HHHHhcCChhHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh-hhHHHHHHHHHHHHhcc
Confidence            3 4568999999999999999999986 77777788889999999999999999976  663 45788888888888999


Q ss_pred             CHHHHHHHHHHHHHHHHhh--hhhccCccch--hhhccCCCCC
Q 013375          403 QLKGAVETYTHLLAALQVQ--TKTFSSDKRF--YKVCLSPSCP  441 (444)
Q Consensus       403 ~~~~A~~~~~~al~l~~~~--~~~~~~~~~~--~~~~~~~~~~  441 (444)
                      +....++.=++-..-.|..  +.....+.+.  ++++++-.|-
T Consensus       487 dL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~  529 (656)
T KOG1914|consen  487 DLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS  529 (656)
T ss_pred             cHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence            9999998888888777733  3345555555  8888888774

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.52  E-value=0.00021  Score=44.33  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      .+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666777777777777777777777777664

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.48  E-value=0.078  Score=51.97  Aligned_cols=154  Identities=13%  Similarity=0.000  Sum_probs=96.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC----CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC-C--
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII----NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-C--  230 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~-~--  230 (444)
                      ......|..++.+..+.|+++.|...+.++...++    ..+.+.+..+.++...|+..+|+..++..+  ...+. .  
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~--~~~~~~~~~  220 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL--KCRLSKNID  220 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhhhccc
Confidence            45667889999999999999999999999988652    257788889999999999999999999988  41111 1  


Q ss_pred             hHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013375          231 LPALLI-ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA  309 (444)
Q Consensus       231 ~~a~~~-~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al  309 (444)
                      +..... ..+.............          ........+.++..+|.-..... .   . ...+..++++..|++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~l~~a~w~~~~~-~---~-~~~~~~~~~~~~~~~a~  285 (352)
T PF02259_consen  221 SISNAELKSGLLESLEVISSTNL----------DKESKELKAKAFLLLAKWLDELY-S---K-LSSESSDEILKYYKEAT  285 (352)
T ss_pred             cccHHHHhhccccccccccccch----------hhhhHHHHHHHHHHHHHHHHhhc-c---c-cccccHHHHHHHHHHHH
Confidence            100000 0000000000000000          00011123455555555443320 0   0 01256789999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH
Q 013375          310 RSTNMRDLSILYRLSLEYAE  329 (444)
Q Consensus       310 ~~~~P~~~~a~~~lg~~~~~  329 (444)
                       ..+|+...+|+.+|..+..
T Consensus       286 -~~~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  286 -KLDPSWEKAWHSWALFNDK  304 (352)
T ss_pred             -HhChhHHHHHHHHHHHHHH
Confidence             9999999999999887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.45  E-value=8.7e-05  Score=70.04  Aligned_cols=117  Identities=16%  Similarity=0.107  Sum_probs=95.1

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|.+++|++.|.+++ .++|..+..+-..|.++.++++...|++.|..|++++||. +..+-..|.....+|++++|...
T Consensus       127 ~G~~~~ai~~~t~ai-~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAI-ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             Ccchhhhhccccccc-ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhchHHHHHH
Confidence            367899999999999 9999999999999999999999999999999999999998 48888889999999999999999


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      +..+.+++-+ ....+|  +-.+.-..+..++-...|++..+
T Consensus       205 l~~a~kld~d-E~~~a~--lKeV~p~a~ki~e~~~k~er~~~  243 (377)
T KOG1308|consen  205 LALACKLDYD-EANSAT--LKEVFPNAGKIEEHRRKYERARE  243 (377)
T ss_pred             HHHHHhcccc-HHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence            9999988752 122222  33344444555555555555544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.43  E-value=0.0019  Score=50.17  Aligned_cols=49  Identities=20%  Similarity=0.154  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      .+..+++.+ +.+|+|+++.+.+|..+...|++++|++.+-.++..+|++
T Consensus         7 ~~~al~~~~-a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAAL-AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            455666666 6666666666666666666666666666666666666554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00088  Score=63.14  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=81.0

Q ss_pred             hHHHHhhHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375          291 DFDRATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK  366 (444)
Q Consensus       291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g  366 (444)
                      .+.+..+|..|+.+|.+.+ +..-.|++    .|.|.+.+....|+|..|+.-+.+|+.++|++ ..++..-+.++..++
T Consensus        90 ~~fK~Kryk~A~~~Yt~Gl-k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Akc~~eLe  167 (390)
T KOG0551|consen   90 EYFKEKRYKDAVESYTEGL-KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAKCLLELE  167 (390)
T ss_pred             HHHHhhhHHHHHHHHHHHH-hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhHHHHHHH
Confidence            3466788999999999999 88777665    45788999999999999999999999999999 699999999999999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 013375          367 RYEDAETILNAALDQTG  383 (444)
Q Consensus       367 ~~~eA~~~~~~al~~~P  383 (444)
                      ++++|+.+++..+..+-
T Consensus       168 ~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  168 RFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHhhhhhhhH
Confidence            99999999999988765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00068  Score=63.86  Aligned_cols=103  Identities=18%  Similarity=-0.006  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      -+-.-|.-|.+.++|..|+..|.+.|+.+-.+   .+..|.+.+.+..-.|+|-.|+.-+.+|+..+|  .+..+++.-|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P--~h~Ka~~R~A  160 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP--THLKAYIRGA  160 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhhhhhh
Confidence            33456899999999999999999999866433   246789999999999999999999999999999  9999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          396 KVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       396 ~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .++..+.++++|+.+++..+.+..+...
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            9999999999999999999887765443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0075  Score=57.10  Aligned_cols=120  Identities=14%  Similarity=-0.024  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCChHHH--HHHHHHHHHccCHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL-EGGSNLKGW--LLMARILSAQKRYEDAE  372 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~--~~la~~l~~~g~~~eA~  372 (444)
                      |.+.+|-...++.+ +-.|.|--++..--.++.-+|+...-...++|.+-. +|+-|...|  -.++..+...|-|++|.
T Consensus       117 g~~h~a~~~wdklL-~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLL-DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             ccccHHHHHHHHHH-HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            56778888999999 999999999998888999999999999999999987 887642222  24566788889999999


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013375          373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  418 (444)
                      ..-+++++++|  .+.-+...++.++...|++.++.+...+--+.|
T Consensus       196 k~A~ralqiN~--~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W  239 (491)
T KOG2610|consen  196 KQADRALQINR--FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW  239 (491)
T ss_pred             HHHHhhccCCC--cchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence            99999999999  888889999999999999999987665544433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.30  E-value=0.0028  Score=64.92  Aligned_cols=119  Identities=19%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             CcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHCCCc
Q 013375          136 NNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGED  211 (444)
Q Consensus       136 ~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~g~~  211 (444)
                      ...+.|..++     +....+.|+..-.....|.++...|+.++|++.|++++.....-.    -.++.+|.++..+++|
T Consensus       247 ~~~~~a~~lL-----~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w  321 (468)
T PF10300_consen  247 VPLEEAEELL-----EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW  321 (468)
T ss_pred             CCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence            3556676665     445688899999999999999999999999999999996443333    3467799999999999


Q ss_pred             hHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHH
Q 013375          212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLA-------EEGATFASRALEC  261 (444)
Q Consensus       212 ~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~-------~eA~~~~~~al~~  261 (444)
                      ++|...|.+.+  +.+.-....+.+..++|+...++.       ++|...++++-..
T Consensus       322 ~~A~~~f~~L~--~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  322 EEAAEYFLRLL--KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            99999999999  666665666777788888888888       6777777666553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.024  Score=51.49  Aligned_cols=199  Identities=14%  Similarity=0.070  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      ..|..-+.++...++|++|-.++.+|.+-.-+|.      .++-.-|.++..+..+.|+...|++|.  .          
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs--~----------   99 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS--E----------   99 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H----------
Confidence            3566667777788888888888888875432222      233344555555666666666666665  1          


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR  315 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~  315 (444)
                           .|...|..+-|...++|+-+.+.                               ..+.++|++.|++++ .+--.
T Consensus       100 -----lY~E~GspdtAAmaleKAak~le-------------------------------nv~Pd~AlqlYqral-avve~  142 (308)
T KOG1585|consen  100 -----LYVECGSPDTAAMALEKAAKALE-------------------------------NVKPDDALQLYQRAL-AVVEE  142 (308)
T ss_pred             -----HHHHhCCcchHHHHHHHHHHHhh-------------------------------cCCHHHHHHHHHHHH-HHHhc
Confidence                 12223444444433333333211                               123456666666655 43222


Q ss_pred             C---H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--
Q 013375          316 D---L---SILYRLSLEYAEQRKLNAAHYYAKMLLKL----EGGSN-LKGWLLMARILSAQKRYEDAETILNAALDQT--  382 (444)
Q Consensus       316 ~---~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~-~~~~~~la~~l~~~g~~~eA~~~~~~al~~~--  382 (444)
                      +   -   +.+-..+.++.+..++++|-..+.|-..+    +.-.. ...+...-.++.-..+|..|..+++..-...  
T Consensus       143 ~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f  222 (308)
T KOG1585|consen  143 DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF  222 (308)
T ss_pred             cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence            2   1   12234456677777777777666654332    22221 1223333344444567888888877654332  


Q ss_pred             --CCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013375          383 --GKWEQGELLRTKAKVQLVQGQLKGAVETYT  412 (444)
Q Consensus       383 --P~~~~~~~~~~la~~~~~~g~~~~A~~~~~  412 (444)
                        |  ++....-++-..+ ..|+.++.-..+.
T Consensus       223 ~~s--ed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  223 LKS--EDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             cCh--HHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence              3  4444444444433 4466666555443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.073  Score=48.51  Aligned_cols=167  Identities=10%  Similarity=0.030  Sum_probs=98.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh---
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---  312 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~---  312 (444)
                      ..+.++++..++++.|..++.++.+-...+      ..++.-+..|.+.+...    .....+.|+...|++|. .+   
T Consensus        35 ekAAvafRnAk~feKakdcLlkA~~~yEnn------rslfhAAKayEqaamLa----ke~~klsEvvdl~eKAs-~lY~E  103 (308)
T KOG1585|consen   35 EKAAVAFRNAKKFEKAKDCLLKASKGYENN------RSLFHAAKAYEQAAMLA----KELSKLSEVVDLYEKAS-ELYVE  103 (308)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHH-HHHHH
Confidence            344455666666666666666666532111      22333333333221110    11234566777777766 53   


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 013375          313 --NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQ----  381 (444)
Q Consensus       313 --~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~----  381 (444)
                        .|+.+..-...+-=..+..+.++|+..|++++++-..+.     .+.+-..+.++.+.++|+||-..+.+-...    
T Consensus       104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~  183 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC  183 (308)
T ss_pred             hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence              344443334444445667899999999999998765542     133446678899999999998887765432    


Q ss_pred             --cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          382 --TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       382 --~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                        .|  +....+...-.++.-..++..|..+|+..-
T Consensus       184 ~~y~--~~~k~~va~ilv~L~~~Dyv~aekc~r~~~  217 (308)
T KOG1585|consen  184 DAYN--SQCKAYVAAILVYLYAHDYVQAEKCYRDCS  217 (308)
T ss_pred             hhcc--cHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence              23  333444444455566669999999988743

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.22  E-value=0.0007  Score=41.88  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .+|..+|.++..+|++++|+.+|+++++.+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4566666666666666666666666666666

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.19  E-value=0.014  Score=57.29  Aligned_cols=169  Identities=13%  Similarity=0.041  Sum_probs=110.4

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                      .|+...+++.-+...+..-. .|.-+........+..+.++.+..        +.|+.++|+..+..++...++.+++++
T Consensus       150 SyRdiqdydamI~Lve~l~~-~p~~~~~~~~~i~~~yafALnRrn--------~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEA-LPTCDVANQHNIKFQYAFALNRRN--------KPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhc-cCccchhcchHHHHHHHHHHhhcc--------cCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            45666677665555554433 322111122344556666665421        257889999999995537788999999


Q ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH--------h---
Q 013375          321 YRLSLEYAEQ---------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL--------D---  380 (444)
Q Consensus       321 ~~lg~~~~~~---------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al--------~---  380 (444)
                      .-+|.+|-+.         ..+++|+..|+++.+++|+. ..+. |++.++...|...+...-.++..        +   
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            9999998542         35889999999999999886 3444 46666666765433332222211        1   


Q ss_pred             hcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          381 QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       381 ~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ..+. ++...+-.++.+..-.|++++|.+++++++.+.|..
T Consensus       299 ~~~~-~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  299 LEKM-QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            1121 344455567777788999999999999999876543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.009  Score=54.73  Aligned_cols=65  Identities=8%  Similarity=-0.013  Sum_probs=43.1

Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375          170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLI  236 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P~~~~a~~~  236 (444)
                      ++.+..+.+.|...-+.+|.++|.+-.+|...-.++..++ +..+=+..+.+.+  .-+|+|-+++..
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~--e~npKNYQvWHH  117 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII--EDNPKNYQVWHH  117 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH--HhCccchhHHHH
Confidence            4455566677777777777777777777777666666654 3445556666666  667777666543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.13  E-value=0.0072  Score=46.88  Aligned_cols=80  Identities=19%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      .+..++++++.+|++ ..+.+.+|..+...|++++|++.+-.++..+|+|++..+...+-.++..+|.-+.-...|++-|
T Consensus         7 ~~~al~~~~a~~P~D-~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    7 DIAALEAALAANPDD-LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            467889999999999 5999999999999999999999999999999977778888999999999999888888888765


Q ss_pred             H
Q 013375          416 A  416 (444)
Q Consensus       416 ~  416 (444)
                      .
T Consensus        86 ~   86 (90)
T PF14561_consen   86 A   86 (90)
T ss_dssp             H
T ss_pred             H
Confidence            4

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.07  E-value=0.042  Score=52.58  Aligned_cols=184  Identities=15%  Similarity=-0.021  Sum_probs=128.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH---
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA----GDLSSLATQIEELLPGIINRKERYHILALCYYG---  207 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~---  207 (444)
                      .+.+..++..+...       ..-.++.....++..+...    .+..+|...|+.+.  +.+++.+.++||.+|..   
T Consensus        54 ~~~~~~a~~~~~~a-------~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g  124 (292)
T COG0790          54 PPDYAKALKSYEKA-------AELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG  124 (292)
T ss_pred             cccHHHHHHHHHHh-------hhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence            44566776654211       1123456777888877753    46889999999554  46789999999999998   


Q ss_pred             -CCCchHHHHHHHHhhcCCCCCCChHH---HHHHHHHHhcC---C-C--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013375          208 -AGEDLVALNLLRTLLSGSEDPKCLPA---LLIASKICGEY---P-D--LAEEGATFASRALECLGDGCDQMESTANCLL  277 (444)
Q Consensus       208 -~g~~~~A~~~~~~al~~~~~P~~~~a---~~~~~~~~~~~---~-~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l  277 (444)
                       ..++.+|...|+++.  ..  +++.+   .+.++..+...   . -  ....|+.+|.++-...       ...+.+.+
T Consensus       125 v~~d~~~A~~~~~~Aa--~~--g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~l  193 (292)
T COG0790         125 VPLDLVKALKYYEKAA--KL--GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLL  193 (292)
T ss_pred             cccCHHHHHHHHHHHH--Hc--CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHH
Confidence             458999999999999  33  33333   55555554332   0 1  2337888888888853       24688889


Q ss_pred             hhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHH
Q 013375          278 GISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---------------KLNAAHYYAKM  342 (444)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g---------------~~~~A~~~~~~  342 (444)
                      |.+|..- .-.      ..+..+|+..|+++. +...  ..+.++++ ++...|               +...|...+.+
T Consensus       194 g~~y~~G-~Gv------~~d~~~A~~wy~~Aa-~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~  262 (292)
T COG0790         194 GRMYEKG-LGV------PRDLKKAFRWYKKAA-EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK  262 (292)
T ss_pred             HHHHHcC-CCC------CcCHHHHHHHHHHHH-HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence            9887653 110      136789999999999 7777  89999999 777666               66677777777


Q ss_pred             HHhhcCC
Q 013375          343 LLKLEGG  349 (444)
Q Consensus       343 al~l~P~  349 (444)
                      +....+.
T Consensus       263 ~~~~~~~  269 (292)
T COG0790         263 ACELGFD  269 (292)
T ss_pred             HHHcCCh
Confidence            7665554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.07  E-value=0.2  Score=52.29  Aligned_cols=27  Identities=15%  Similarity=0.108  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375           65 AVELLPELWKLADAPRETIMSYRRALL   91 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~~y~~aL~   91 (444)
                      -+...-.+++.++..++|+..|+..-+
T Consensus       546 kfk~ae~ifleqn~te~aigmy~~lhk  572 (1636)
T KOG3616|consen  546 KFKEAEMIFLEQNATEEAIGMYQELHK  572 (1636)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHh
Confidence            333344577888888999888876543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.04  E-value=0.4  Score=47.60  Aligned_cols=62  Identities=23%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          315 RDLSILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       315 ~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      .+.+.-+.|+.+  ++.+|+|.++.-+..=..++.| ++ .++..+|.++..+++|+||..++...
T Consensus       458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~-~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP-QAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH-HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            445555666544  5678999999999999999999 54 99999999999999999999998653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.04  E-value=0.32  Score=52.11  Aligned_cols=295  Identities=17%  Similarity=0.076  Sum_probs=165.6

Q ss_pred             HHHHHHHHhhhcCCCCCCccc---cccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHH
Q 013375          105 QKEFAIFLLYCGGETCPPNLR---SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD-PSILDHLSFAFSIAGDLSSL  180 (444)
Q Consensus       105 ~~~~a~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~-~~~~~~lg~~l~~~g~~~~A  180 (444)
                      ...+++++...-....++...   ......+...|...+||.-.       ....+|.- .+.....+.-+...++..--
T Consensus       327 H~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hA-------laA~d~~~aa~lle~~~~~L~~~~~lsll  399 (894)
T COG2909         327 HHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHA-------LAAGDPEMAADLLEQLEWQLFNGSELSLL  399 (894)
T ss_pred             hHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHH-------HhCCCHHHHHHHHHhhhhhhhcccchHHH
Confidence            556677655443332222211   12234567778888888643       22222321 11222223333333433322


Q ss_pred             HHHHHhhc-CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-------HHHHHHHHHhcCCCCHHHHH
Q 013375          181 ATQIEELL-PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-------ALLIASKICGEYPDLAEEGA  252 (444)
Q Consensus       181 ~~~~~~al-~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~-------a~~~~~~~~~~~~~~~~eA~  252 (444)
                      .......- ..--.+|......|-......++.+|..++.++..+-..|++..       .....+.+. ...|++++|+
T Consensus       400 ~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~va-l~~~~~e~a~  478 (894)
T COG2909         400 LAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVA-LNRGDPEEAE  478 (894)
T ss_pred             HHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHH-HhcCCHHHHH
Confidence            22221110 00113556666678888899999999999988874222333221       112223333 3468999999


Q ss_pred             HHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh----CCCCHHHH--HHHHHH
Q 013375          253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST----NMRDLSIL--YRLSLE  326 (444)
Q Consensus       253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~----~P~~~~a~--~~lg~~  326 (444)
                      +..+.+++.+|++.......+...+|.+..-           .|++++|..+.+.+. +.    +--...+|  +.-+.+
T Consensus       479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~-----------~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~i  546 (894)
T COG2909         479 DLARLALVQLPEAAYRSRIVALSVLGEAAHI-----------RGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEI  546 (894)
T ss_pred             HHHHHHHHhcccccchhhhhhhhhhhHHHHH-----------hchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHH
Confidence            9999999988876544444555556655433           367888888888877 65    33333444  334777


Q ss_pred             HHHcC--CHHHHHHHHHHH----HhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh----cCCCCc-HHHHHHHH
Q 013375          327 YAEQR--KLNAAHYYAKML----LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ----TGKWEQ-GELLRTKA  395 (444)
Q Consensus       327 ~~~~g--~~~~A~~~~~~a----l~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~----~P~~~~-~~~~~~la  395 (444)
                      +..+|  .+++.+..|...    +.-.|-+ .-.....+.++...-|++.+..-..+.++.    .|.+-. .-+...++
T Consensus       547 l~~qGq~~~a~~~~~~~~~~~q~l~q~~~~-~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA  625 (894)
T COG2909         547 LEAQGQVARAEQEKAFNLIREQHLEQKPRH-EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA  625 (894)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence            78888  344444444433    2233443 134444555555555677777666666644    231112 22334789


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          396 KVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       396 ~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      .+....|+.++|.........+...
T Consensus       626 ~l~~~~Gdl~~A~~~l~~~~~l~~~  650 (894)
T COG2909         626 ELEFLRGDLDKALAQLDELERLLLN  650 (894)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999998888776553

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.03  E-value=0.0077  Score=47.99  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=74.4

Q ss_pred             HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013375          201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS  280 (444)
Q Consensus       201 la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~  280 (444)
                      +|..++..|++-+|+++.+..+  ..++++...++.     ..     .++--+++.+....+|+     ...-      
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i--~~h~~~~~~~~l-----h~-----~QG~if~~lA~~ten~d-----~k~~------   58 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLI--SRHGEDESSWLL-----HR-----LQGTIFYKLAKKTENPD-----VKFR------   58 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHH--HHccCCCchHHH-----HH-----HHhHHHHHHHHhccCch-----HHHH------
Confidence            4667888899999999999999  777776643321     00     01222333344332222     2222      


Q ss_pred             hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375          281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE  347 (444)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  347 (444)
                                      .+-.++++|.+++ .+.|+.+..++.||.-+-...-|++++...+++|.+.
T Consensus        59 ----------------yLl~sve~~s~a~-~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   59 ----------------YLLGSVECFSRAV-ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             ----------------HHHHhHHHHHHHh-ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence                            2346889999999 9999999999999988888888999999999998753

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.99  E-value=0.046  Score=46.40  Aligned_cols=61  Identities=23%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      .++..++..+...|++++|+..+++++.++|-+ -.+|..+-.++...|++.+|+..|++..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            445566677777888888888888888888887 4788888888888888888888887664

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.97  E-value=0.0014  Score=40.05  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      +++++|.++.+.|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.95  E-value=0.0022  Score=40.42  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          391 LRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      |.++|.++..+|++++|++.|+++|.+.++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            445555555555555555555555555443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.17  Score=53.19  Aligned_cols=235  Identities=14%  Similarity=0.005  Sum_probs=145.4

Q ss_pred             CCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHCC-----CchHHHHHHHHhhc
Q 013375          159 WDPSILDHLSFAFSIA-----GDLSSLATQIEELLP-----GIINRKERYHILALCYYGAG-----EDLVALNLLRTLLS  223 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~-----g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~l~~~g-----~~~~A~~~~~~al~  223 (444)
                      .+..+...+|.++..-     .+.+.|+.+|+.+.+     ..-..+.+.+.+|.+|....     +++.|...|.++- 
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-  320 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-  320 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-
Confidence            4666777888877754     689999999999966     12236678899999999964     5677999999999 


Q ss_pred             CCCCCCChHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHH
Q 013375          224 GSEDPKCLPALLIASKICGEYP--DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA  301 (444)
Q Consensus       224 ~~~~P~~~~a~~~~~~~~~~~~--~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA  301 (444)
                       ..  +++.+.+.+|..+....  .+...|..+|..|... .      ...+.+.++.||..-.-       ...+...|
T Consensus       321 -~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G------~~~A~~~la~~y~~G~g-------v~r~~~~A  383 (552)
T KOG1550|consen  321 -EL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-G------HILAIYRLALCYELGLG-------VERNLELA  383 (552)
T ss_pred             -hc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-C------ChHHHHHHHHHHHhCCC-------cCCCHHHH
Confidence             44  34456666666544333  3467999999999884 2      24688888888765310       12357899


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcCCCC-h-HHHHHHHH-HHHHc----cCHHHHHH
Q 013375          302 LQALVSAARSTNMRDLSILYRLSLEYAEQ-RKLNAAHYYAKMLLKLEGGSN-L-KGWLLMAR-ILSAQ----KRYEDAET  373 (444)
Q Consensus       302 ~~~~~~al~~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~-~-~~~~~la~-~l~~~----g~~~eA~~  373 (444)
                      ...|+++. +.+  ++.+.+.++..+.-. ++++.+.-.+...-++--+.+ . .+++..-. .....    .+..-+..
T Consensus       384 ~~~~k~aA-~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~  460 (552)
T KOG1550|consen  384 FAYYKKAA-EKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS  460 (552)
T ss_pred             HHHHHHHH-Hcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence            99999999 777  677777777666543 666666666655544432210 0 11111000 01111    13444555


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHH
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKVQLVQ----GQLKGAVETYTHLLAAL  418 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l~  418 (444)
                      .+.++-..    .+..+...+|.++..-    .+++.|...|.++..-.
T Consensus       461 ~~~~a~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  461 LYSRAAAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             HHHHHHhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence            55555432    3445555566655332    23566666666665433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.00042  Score=65.59  Aligned_cols=88  Identities=9%  Similarity=-0.011  Sum_probs=81.6

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 013375          330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE  409 (444)
Q Consensus       330 ~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~  409 (444)
                      .|.+++|++.|.+++.++|.. +..+-..+.++.++++...|+.-|+.|++++|  |...-+-.+|.....+|++++|..
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINP--DSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             CcchhhhhcccccccccCCch-hhhcccccceeeeccCCchhhhhhhhhhccCc--ccccccchhhHHHHHhhchHHHHH
Confidence            588999999999999999998 59999999999999999999999999999999  888888889999999999999999


Q ss_pred             HHHHHHHHHHh
Q 013375          410 TYTHLLAALQV  420 (444)
Q Consensus       410 ~~~~al~l~~~  420 (444)
                      .++.+..+.=+
T Consensus       204 dl~~a~kld~d  214 (377)
T KOG1308|consen  204 DLALACKLDYD  214 (377)
T ss_pred             HHHHHHhcccc
Confidence            99999876543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.86  E-value=0.074  Score=55.82  Aligned_cols=183  Identities=19%  Similarity=0.200  Sum_probs=131.6

Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC-----CCchHHHHHHHHhhcC---CCCCCChHHHHHHHHHHhcC---
Q 013375          176 DLSSLATQIEELLPGIINRKERYHILALCYYGA-----GEDLVALNLLRTLLSG---SEDPKCLPALLIASKICGEY---  244 (444)
Q Consensus       176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-----g~~~~A~~~~~~al~~---~~~P~~~~a~~~~~~~~~~~---  244 (444)
                      +...|...|+.+-..  ++..+.+.+|.++..-     .+.+.|+..|+.+.+.   ...-.++.+...+|.+++..   
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888888876  6888999999998875     5889999999998720   00111444555667766553   


Q ss_pred             CC-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375          245 PD-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL  323 (444)
Q Consensus       245 ~~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l  323 (444)
                      .. +.+.|+.+|.++-+.-.       ..+.+.+|.++....        ...+...|.+.|..|.   .-.+..+.+++
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~--------~~~d~~~A~~yy~~Aa---~~G~~~A~~~l  366 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGT--------KERDYRRAFEYYSLAA---KAGHILAIYRL  366 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCC--------ccccHHHHHHHHHHHH---HcCChHHHHHH
Confidence            12 56789999999998533       358899999987643        0134679999999998   46788999999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH-HHccCHHHHHHHHHHHHhh
Q 013375          324 SLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL-SAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       324 g~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l-~~~g~~~eA~~~~~~al~~  381 (444)
                      |.+|..    ..+...|..+|+++.+.++  + .+...++.++ ...+++..+...+....+.
T Consensus       367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~-~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  367 ALCYELGLGVERNLELAFAYYKKAAEKGN--P-SAAYLLGAFYEYGVGRYDTALALYLYLAEL  426 (552)
T ss_pred             HHHHHhCCCcCCCHHHHHHHHHHHHHccC--h-hhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence            999875    3689999999999999883  2 4444444443 3338888877766555544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.072  Score=48.99  Aligned_cols=113  Identities=13%  Similarity=0.070  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHH-HHHHHHHH
Q 013375          300 KALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE-DAETILNA  377 (444)
Q Consensus       300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~-eA~~~~~~  377 (444)
                      .|+..-+.++ .++|.+..+|...=.++..++ ++.+=++++.+.++-+|++ .+.|...-.+....|++. .=+.....
T Consensus        61 RAl~LT~d~i-~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-YQvWHHRr~ive~l~d~s~rELef~~~  138 (318)
T KOG0530|consen   61 RALQLTEDAI-RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-YQVWHHRRVIVELLGDPSFRELEFTKL  138 (318)
T ss_pred             HHHHHHHHHH-HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-hhHHHHHHHHHHHhcCcccchHHHHHH
Confidence            4444444455 555555555544444443332 4444455555555555554 355555444444444444 44444445


Q ss_pred             HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       378 al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      ++..+.  .|..+|.++-=+....+.++.-+....+.|+
T Consensus       139 ~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle  175 (318)
T KOG0530|consen  139 MLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLE  175 (318)
T ss_pred             HHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            554444  3445555544444444445554444444444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.018  Score=58.48  Aligned_cols=130  Identities=16%  Similarity=0.051  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          298 QAKALQALVSAARSTNMRDLSILYR--LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      ..-++..+..-+ .++|.++..+..  +...+...+....+.-....++..+|++. .+..+|+..+...|....++..+
T Consensus        47 ~~~~~~a~~~~~-~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          47 QALAIYALLLGI-AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC-PAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             hhHHHHHHHccC-ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc-hHHHHHHHHHHHhhhHHHHHHHH
Confidence            344677777788 889999987543  57788888999999999999999999995 99999999888888777766655


Q ss_pred             HH-HHhhcCCCCcHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013375          376 NA-ALDQTGKWEQGELLRTK------AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF  431 (444)
Q Consensus       376 ~~-al~~~P~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  431 (444)
                      .. +....|  ++......+      |..+..+|+..++.....++.++.|+...+.+.-...
T Consensus       125 ~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         125 SEIAEWLSP--DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHhcCc--chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            44 888889  888888877      9999999999999999999999999998877766555

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.77  E-value=0.0049  Score=42.47  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR  360 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~  360 (444)
                      +.+|.+|..++++|+|++|..+++.+|+++|++. ++......
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHHHHH
Confidence            3467777777777777777777777777777773 66554433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.77  E-value=0.0047  Score=57.72  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=59.6

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR  360 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~  360 (444)
                      +.|+.++|...|+-|+ .++|++++++...|......+++-+|-.+|-+|+.++|.+. +++.+.+.
T Consensus       128 ~~Gk~ekA~~lfeHAl-alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns-eALvnR~R  192 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHAL-ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS-EALVNRAR  192 (472)
T ss_pred             hccchHHHHHHHHHHH-hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch-HHHhhhhc
Confidence            3577899999999999 99999999999999999999999999999999999999994 88887654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.74  E-value=0.0032  Score=39.62  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKL  346 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l  346 (444)
                      +.+||.+|.++|++++|+++|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666666666666666666664433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.74  E-value=0.55  Score=44.65  Aligned_cols=75  Identities=16%  Similarity=0.071  Sum_probs=51.5

Q ss_pred             CchhHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCCh
Q 013375            1 MSIHAISLLLEAIFLKAKCLQGLG-RFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAP   79 (444)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~   79 (444)
                      +++.....++..+|+-|+.+.+.+ ++++|....+++.+..++..... ...    ....+.--.++..++.+|.+.+.+
T Consensus        26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~-~~~----~~~~elr~~iL~~La~~~l~~~~~  100 (278)
T PF08631_consen   26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD-KLS----PDGSELRLSILRLLANAYLEWDTY  100 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc-ccC----CcHHHHHHHHHHHHHHHHHcCCCh
Confidence            367788899999999999999999 99999999999998876521110 110    012223345566666666665554


Q ss_pred             H
Q 013375           80 R   80 (444)
Q Consensus        80 ~   80 (444)
                      +
T Consensus       101 ~  101 (278)
T PF08631_consen  101 E  101 (278)
T ss_pred             H
Confidence            3

It is also involved in sporulation [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.74  E-value=0.56  Score=44.64  Aligned_cols=125  Identities=15%  Similarity=-0.002  Sum_probs=87.8

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHH-hhCCCCH----HHHHHHHHHHHhcC-CHHHHHHHHHhhcCC----C------CCC--
Q 013375          133 VPRNNIEEAILLLMILLRKVAL-KRIEWDP----SILDHLSFAFSIAG-DLSSLATQIEELLPG----I------INR--  194 (444)
Q Consensus       133 ~~~~~~~eAi~~l~~~~~~~~l-~~~p~~~----~~~~~lg~~l~~~g-~~~~A~~~~~~al~~----~------p~~--  194 (444)
                      ..+|+++-|..++..+  +..+ ...|+..    ..+++.|.-+...+ +++.|+..++++..+    .      |+.  
T Consensus         4 ~~~~~~~~A~~~~~K~--~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKA--KDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             hhhCCHHHHHHHHHHh--hhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            3577888888776543  1112 3445433    47788999999999 999999999888766    1      222  


Q ss_pred             --HHHHHHHHHHHHHCCCch---HHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013375          195 --KERYHILALCYYGAGEDL---VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECL  262 (444)
Q Consensus       195 --~~~~~~la~~l~~~g~~~---~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~  262 (444)
                        ..+...|+.+|...+.++   +|....+.+-  ...|+.+..+.+...++.. .++.+++.+.+.+++...
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~--~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLE--SEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence              134556788898888765   4556666666  6788888888766677665 677888888888888854

It is also involved in sporulation [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.70  E-value=0.0031  Score=38.41  Aligned_cols=31  Identities=13%  Similarity=0.173  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ++++.+|.++...|++++|+..|+++++..|
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3667788888888888888888888888888

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.69  E-value=0.087  Score=51.28  Aligned_cols=161  Identities=11%  Similarity=-0.067  Sum_probs=106.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375          152 VALKRIEWDPSILDHLSFAFSIAGD------------LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       152 ~~l~~~p~~~~~~~~lg~~l~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      ..+..+|.|.++|..+....-..-.            .+.-+..|++||+.+|++...+..+-.+.......++..+..+
T Consensus        10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we   89 (321)
T PF08424_consen   10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE   89 (321)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3457889999999877754443322            4566789999999999999999988888888888888899999


Q ss_pred             HhhcCCCCCCChHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhh
Q 013375          220 TLLSGSEDPKCLPALLIASKICGEY--PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATR  297 (444)
Q Consensus       220 ~al~~~~~P~~~~a~~~~~~~~~~~--~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  297 (444)
                      +++  ..+|+++..+..........  .-.+++....|.++|+.+.....          |..                .
T Consensus        90 ~~l--~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~----------~~~----------------~  141 (321)
T PF08424_consen   90 ELL--FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS----------GRM----------------T  141 (321)
T ss_pred             HHH--HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc----------ccc----------------c
Confidence            999  88999988775443333221  22455666777777664321100          000                0


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375          298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE  347 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  347 (444)
                      ........+..+       ..++..+...+...|-.+.|+..++-.++++
T Consensus       142 ~~~~~~~~e~~~-------l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  142 SHPDLPELEEFM-------LYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             cccchhhHHHHH-------HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            001111122211       2455666677777888888888888888876

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=1.5  Score=47.77  Aligned_cols=211  Identities=11%  Similarity=0.018  Sum_probs=122.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      -+.|++|..+|.+..+.|...+|+++|-++     ++|..|...-.+-.+.|.|++=++.+.-|-+-...|.--..+.  
T Consensus      1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi-- 1173 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELI-- 1173 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHH--
Confidence            456778888888888888888888888554     5667777777777888888888887777764123333222211  


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL  317 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~  317 (444)
                        ..+.+.++..|-.++.      ..|+.    +.. -..|.-.+.           .+.|+.|.-+|..+-        
T Consensus      1174 --~AyAkt~rl~elE~fi------~gpN~----A~i-~~vGdrcf~-----------~~~y~aAkl~y~~vS-------- 1221 (1666)
T KOG0985|consen 1174 --FAYAKTNRLTELEEFI------AGPNV----ANI-QQVGDRCFE-----------EKMYEAAKLLYSNVS-------- 1221 (1666)
T ss_pred             --HHHHHhchHHHHHHHh------cCCCc----hhH-HHHhHHHhh-----------hhhhHHHHHHHHHhh--------
Confidence              1233345554433332      22321    111 112322211           245555555554433        


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------------------------hHHHHHHHHHHHHccCHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------------------------LKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------------------------~~~~~~la~~l~~~g~~~eA~~  373 (444)
                       -|-.|+..+...|+|..|+...+||-...-.-.                        ++-+-.+-..|...|-|+|-+.
T Consensus      1222 -N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1222 -NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence             467778888888888888888887743322100                        1122234556777788888888


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      .++.++.+.-  .+-..+--+|.+|.+- +++.-.+++
T Consensus      1301 l~Ea~LGLER--AHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1301 LLEAGLGLER--AHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred             HHHhhhchhH--HHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            8888887765  4545555566655443 344444433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.55  E-value=0.0075  Score=56.43  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      -..+.|+.++|...|+.|+++.|+++ +++..+|.+....++.-+|=.+|-+|+..+|  .|.+++.+++...
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlalaP~~p-~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP--~nseALvnR~RT~  194 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALAPTNP-QILIEMGQFREMHNEIVEADQCYVKALTISP--GNSEALVNRARTT  194 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCH-HHHHHHhHHHHhhhhhHhhhhhhheeeeeCC--CchHHHhhhhccc
Confidence            45678999999999999999999996 9999999999999999999999999999999  8999998887643

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.55  E-value=0.8  Score=44.76  Aligned_cols=124  Identities=18%  Similarity=0.056  Sum_probs=93.4

Q ss_pred             HHhhHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--------------------
Q 013375          294 RATRQAKALQALVSAARSTNM----RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--------------------  349 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------------  349 (444)
                      +.|+++-|...+.++. ..++    ..+.+.+.-+..+...|+..+|+..++..+.....                    
T Consensus       158 k~g~~~~A~~~l~~~~-~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (352)
T PF02259_consen  158 KAGNFQLALSALNRLF-QLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE  236 (352)
T ss_pred             HCCCcHHHHHHHHHHh-ccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence            4578899999999998 7652    25778888899999999999999999988881111                    


Q ss_pred             -------C------ChHHHHHHHHHHHHc------cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH------
Q 013375          350 -------S------NLKGWLLMARILSAQ------KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL------  404 (444)
Q Consensus       350 -------~------~~~~~~~la~~l~~~------g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~------  404 (444)
                             .      .+.++..+|.....+      +..++++..|.++++..|  ....+|+..|......=+.      
T Consensus       237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~k~~~~~a~~~~~~~~~~~~~~~  314 (352)
T PF02259_consen  237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP--SWEKAWHSWALFNDKLLESDPREKE  314 (352)
T ss_pred             cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHhhhhccc
Confidence                   0      024566777777777      888999999999999999  7888998888877554222      


Q ss_pred             -----------HHHHHHHHHHHHHHHh
Q 013375          405 -----------KGAVETYTHLLAALQV  420 (444)
Q Consensus       405 -----------~~A~~~~~~al~l~~~  420 (444)
                                 ..|+..|-+++.+.++
T Consensus       315 ~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  315 ESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                       2367777777766654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.54  E-value=0.13  Score=50.72  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-C--CcHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTGK-W--EQGELLRT  393 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~-~--~~~~~~~~  393 (444)
                      .+++.....+.+.|-+..|++.++-.+.+||+ ||..+.+.+-....+.++|+==+..++.......+ |  .-+..-+.
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S  183 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS  183 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence            34556667778889999999999999999998 76555666666666778888777777765542110 0  01245667


Q ss_pred             HHHHHHHhCCH---------------HHHHHHHHHHHHHHHhhhh
Q 013375          394 KAKVQLVQGQL---------------KGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       394 la~~~~~~g~~---------------~~A~~~~~~al~l~~~~~~  423 (444)
                      .+.++...++.               ++|-..+.+|+...|.--.
T Consensus       184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~  228 (360)
T PF04910_consen  184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV  228 (360)
T ss_pred             HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence            77788888888               8999999999988775443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.53  E-value=0.015  Score=40.06  Aligned_cols=45  Identities=16%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      ++++.+|..+.++|+|++|..+++.+|+..|  +|..+......+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--~N~Qa~~L~~~i~~   46 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP--DNRQAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHH
Confidence            5678899999999999999999999999999  88887776665543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.52  E-value=0.0041  Score=36.77  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      +++.+|.++..+|++++|+..++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4445555555555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10941 hypothetical protein; Provisional

Probab=96.51  E-value=0.029  Score=52.86  Aligned_cols=76  Identities=16%  Similarity=0.069  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      .+.+|=.+|.+.++++.|+.+.++.+.++|+++ .-|.-.|.++..+|.+..|+.-++..++..|  +++.+-..+..+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp-~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P--~dp~a~~ik~ql  258 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDP-YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP--EDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CchhHHHHHHHH
Confidence            345777888889999999999999999999985 8888889999999999999999999999998  776666555444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.45  E-value=0.23  Score=43.80  Aligned_cols=83  Identities=22%  Similarity=0.130  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013375          297 RQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~  372 (444)
                      ++++|+..++.++ . .|.|..    +-.+||.+...+|++++|+..+.....  +......-...|.++..+|+-++|+
T Consensus       104 ~~d~A~aqL~~~l-~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar  179 (207)
T COG2976         104 NLDKAEAQLKQAL-A-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEAR  179 (207)
T ss_pred             cHHHHHHHHHHHH-c-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHH
Confidence            4455555555554 2 222221    234566666666666666666554322  1111122345566666666666666


Q ss_pred             HHHHHHHhhcC
Q 013375          373 TILNAALDQTG  383 (444)
Q Consensus       373 ~~~~~al~~~P  383 (444)
                      ..|.+|+...+
T Consensus       180 ~ay~kAl~~~~  190 (207)
T COG2976         180 AAYEKALESDA  190 (207)
T ss_pred             HHHHHHHHccC
Confidence            66666666654

>smart00028 TPR Tetratricopeptide repeats

Probab=96.41  E-value=0.0042  Score=36.74  Aligned_cols=32  Identities=28%  Similarity=0.285  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013375          196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK  229 (444)
Q Consensus       196 ~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~  229 (444)
                      .+|+.+|.++...|++++|+..|++++  +.+|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~--~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKAL--ELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHH--ccCCC
Confidence            456677777777777777777777777  66664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.78  Score=45.97  Aligned_cols=221  Identities=14%  Similarity=0.113  Sum_probs=144.2

Q ss_pred             cCCHHHHHHHHHhhcCCC------CCCHH--------HHHHHHHHHHHCCCchHHHHHHHHhhc-CCCCCC-------Ch
Q 013375          174 AGDLSSLATQIEELLPGI------INRKE--------RYHILALCYYGAGEDLVALNLLRTLLS-GSEDPK-------CL  231 (444)
Q Consensus       174 ~g~~~~A~~~~~~al~~~------p~~~~--------~~~~la~~l~~~g~~~~A~~~~~~al~-~~~~P~-------~~  231 (444)
                      .|-+++|..+-++++...      |....        ..-++..+-.-.|++.+|+........ ....|.       .+
T Consensus       288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~  367 (629)
T KOG2300|consen  288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA  367 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence            355666666666665331      21222        233456666778999999887766541 034555       23


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375          232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS  311 (444)
Q Consensus       232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~  311 (444)
                      ..++.+|..| ..-|.++.|...|..+.+.....  .+.+.+..++++.|...++              +...|+-.= .
T Consensus       368 ~ih~LlGlys-~sv~~~enAe~hf~~a~k~t~~~--dl~a~~nlnlAi~YL~~~~--------------~ed~y~~ld-~  429 (629)
T KOG2300|consen  368 QIHMLLGLYS-HSVNCYENAEFHFIEATKLTESI--DLQAFCNLNLAISYLRIGD--------------AEDLYKALD-L  429 (629)
T ss_pred             HHHHHHhhHh-hhcchHHHHHHHHHHHHHhhhHH--HHHHHHHHhHHHHHHHhcc--------------HHHHHHHHH-h
Confidence            3445555444 34688999999999999975433  3456667788888877542              333333333 5


Q ss_pred             hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHccCHHHHHHHH
Q 013375          312 TNMRD----------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       312 ~~P~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      +.|.|          ..++|-.|...+.++++.||....++.++.. +..      +-.+..||.+....|+..|+...+
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmv  508 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV  508 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence            66664          2356778888899999999999999999876 210      134567888999999999999999


Q ss_pred             HHHHhhcCC-CCcHHHHH---HHHHHHHHhCC--HHHHHHHHHH
Q 013375          376 NAALDQTGK-WEQGELLR---TKAKVQLVQGQ--LKGAVETYTH  413 (444)
Q Consensus       376 ~~al~~~P~-~~~~~~~~---~la~~~~~~g~--~~~A~~~~~~  413 (444)
                      +-++.+..+ +|.+..++   .+-.++...|+  .....+.|++
T Consensus       509 rpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  509 RPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             chHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            999876532 15444443   44567777887  5555555544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.25  E-value=0.008  Score=38.76  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=28.1

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCC
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGF   48 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~   48 (444)
                      +.++.+.|.+|...|++++|...+++++++.++.+..+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~H   40 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDH   40 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccc
Confidence            567899999999999999999999999998776554433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.21  E-value=0.1  Score=43.15  Aligned_cols=83  Identities=14%  Similarity=0.124  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          316 DLSILYRLSLEYAEQR---KLNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~-l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      ..+..+++++++....   +..+.+.+++..++ -.|+..-++.+.|+.-+.+.|+|+.++.+++..++..|  +|.++.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~--~n~Qa~  108 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP--NNRQAL  108 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC--CcHHHH
Confidence            3567899999998764   56679999999996 66665457888999999999999999999999999999  787777


Q ss_pred             HHHHHHHHH
Q 013375          392 RTKAKVQLV  400 (444)
Q Consensus       392 ~~la~~~~~  400 (444)
                      -..-.+..+
T Consensus       109 ~Lk~~ied~  117 (149)
T KOG3364|consen  109 ELKETIEDK  117 (149)
T ss_pred             HHHHHHHHH
Confidence            666555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.18  E-value=0.9  Score=46.16  Aligned_cols=215  Identities=12%  Similarity=0.068  Sum_probs=140.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCC---Cc
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGD--------------LSSLATQIEELLPGIIN-RKERYHILALCYYGAG---ED  211 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~--------------~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~g---~~  211 (444)
                      .+.++.--+..+++|+.-+.-+...++              -+++..+|++++..--. +.-.++.++..-...-   ++
T Consensus       268 yeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~  347 (656)
T KOG1914|consen  268 YEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKE  347 (656)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchh
Confidence            345555568889999877766666666              78899999999875332 3444444444332222   25


Q ss_pred             hHHHHHHHHhhc-CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013375          212 LVALNLLRTLLS-GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT  290 (444)
Q Consensus       212 ~~A~~~~~~al~-~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~  290 (444)
                      +.--..+.++++ ...+|+-+...++.  ...+     .++++.++.+......+..   ..-+.+...++..-      
T Consensus       348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn--~irR-----~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~mEy------  411 (656)
T KOG1914|consen  348 KKVHEIYNKLLKIEDIDLTLVYCQYMN--FIRR-----AEGLKAARKIFKKAREDKR---TRHHVFVAAALMEY------  411 (656)
T ss_pred             hhhHHHHHHHHhhhccCCceehhHHHH--HHHH-----hhhHHHHHHHHHHHhhccC---CcchhhHHHHHHHH------
Confidence            556677777773 13455544433322  1111     2444444444443322211   01122222222211      


Q ss_pred             hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHccCH
Q 013375          291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSNLKGWLLMARILSAQKRY  368 (444)
Q Consensus       291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~~la~~l~~~g~~  368 (444)
                        .-.++..-|...|+--+ +..+++|..-+..-..+...++-..|...|++++.-  .|+...+.|..+-..-..-|+.
T Consensus       412 --~cskD~~~AfrIFeLGL-kkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL  488 (656)
T KOG1914|consen  412 --YCSKDKETAFRIFELGL-KKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL  488 (656)
T ss_pred             --HhcCChhHHHHHHHHHH-HhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence              12467789999999999 999999999888888899999999999999999986  6765557898888888888999


Q ss_pred             HHHHHHHHHHHhhcC
Q 013375          369 EDAETILNAALDQTG  383 (444)
Q Consensus       369 ~eA~~~~~~al~~~P  383 (444)
                      .-.++.-++-....|
T Consensus       489 ~si~~lekR~~~af~  503 (656)
T KOG1914|consen  489 NSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            998888887776666

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=2.6  Score=46.10  Aligned_cols=288  Identities=14%  Similarity=0.129  Sum_probs=175.9

Q ss_pred             HHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCcc-c-------c---ccCccccCCCcHH
Q 013375           71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNL-R-------S---QMGSSFVPRNNIE  139 (444)
Q Consensus        71 ~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~-~-------~---~~~~~~~~~~~~~  139 (444)
                      ..++..+-+.|=|+.+++++-.|..+. ++     .++-.+|+.......+..+ .       +   ..+.+.+..+-++
T Consensus       992 kAfMtadLp~eLIELLEKIvL~~S~Fs-e~-----~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen  992 KAFMTADLPNELIELLEKIVLDNSVFS-EN-----RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred             HHHHhcCCcHHHHHHHHHHhcCCcccc-cc-----hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence            356788899999999999876531111 11     1222222222222211110 0       1   1234455566677


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375          140 EAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       140 eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      ||...+         ++..-+..+..   ......+..+.|.+.-++.     +.++.|..+|.+..+.|...+|+..|-
T Consensus      1066 EAF~if---------kkf~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1066 EAFAIF---------KKFDMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred             HHHHHH---------HHhcccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHH
Confidence            776654         22222333322   2334456777777766654     468999999999999999999999998


Q ss_pred             HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH
Q 013375          220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA  299 (444)
Q Consensus       220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  299 (444)
                      ++=    ||.+.   ...-.++ .+.|.+++-+.++.-+-+......      .-..|-.+|.+.+           +..
T Consensus      1129 kad----Dps~y---~eVi~~a-~~~~~~edLv~yL~MaRkk~~E~~------id~eLi~AyAkt~-----------rl~ 1183 (1666)
T KOG0985|consen 1129 KAD----DPSNY---LEVIDVA-SRTGKYEDLVKYLLMARKKVREPY------IDSELIFAYAKTN-----------RLT 1183 (1666)
T ss_pred             hcC----CcHHH---HHHHHHH-HhcCcHHHHHHHHHHHHHhhcCcc------chHHHHHHHHHhc-----------hHH
Confidence            865    67643   2223333 457899999999988887653321      1111222333322           222


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                          -++.-+  ..|+.+. .-..|.-++..|.|+.|.-.|..         ..-|-.|+..+..+|+|+.|+..-++|-
T Consensus      1184 ----elE~fi--~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ----ELEEFI--AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred             ----HHHHHh--cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                223333  4566654 45788889999999999888853         3667889999999999999999888774


Q ss_pred             hhcCCC--------C----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          380 DQTGKW--------E----------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       380 ~~~P~~--------~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ...- |        +                +.+=+--+-..|...|-++|-+..++.+|.+...|-+
T Consensus      1248 s~kt-WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1248 STKT-WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred             chhH-HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence            2210 1        0                1111233455667788888888888888877665544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.17  E-value=0.16  Score=40.95  Aligned_cols=98  Identities=19%  Similarity=0.057  Sum_probs=68.2

Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR------------DLSILYRLSLEYAEQRKLNAAHYY  339 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~  339 (444)
                      .+|..|+..-.+.         +.+.+++|...++++. .....            |+-.+-.|+-++..+|+|++++..
T Consensus         8 ~aY~aLs~ae~ql---------~~g~~~eAa~s~r~AM-~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~s   77 (144)
T PF12968_consen    8 MAYMALSDAERQL---------QDGAYEEAAASCRKAM-EVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQS   77 (144)
T ss_dssp             HHHHHHHHHHHHH---------HHT-HHHHHHHHHHHH-HHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHH---------HhhhHHHHHHHHHHHH-HHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            4555555544332         3477999999999998 76432            223445677788999999998777


Q ss_pred             HHHHHh-------hcCCCChHHH----HHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          340 AKMLLK-------LEGGSNLKGW----LLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       340 ~~~al~-------l~P~~~~~~~----~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      ..++|.       |+.+. ...|    ++.+..+...|+.+||+..|+.+-+
T Consensus        78 A~~aL~YFNRRGEL~qde-GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   78 ADRALRYFNRRGELHQDE-GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHH--TTSTH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            776664       66665 3555    4678899999999999999998875

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.25  Score=48.36  Aligned_cols=100  Identities=9%  Similarity=0.072  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC----HH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR----YE  369 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~----~~  369 (444)
                      ...++-+.....++ +.+|++.-+|+...+++.+.+  ++..=+..++++++.||.+ ..+|...-.+.....+    ..
T Consensus        89 ~~ld~eL~~~~~~L-~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN-fh~W~YRRfV~~~~~~~~~~~~  166 (421)
T KOG0529|consen   89 ALLDEELKYVESAL-KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN-FHAWHYRRFVVEQAERSRNLEK  166 (421)
T ss_pred             HhhHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc-ccchHHHHHHHHHHhcccccch
Confidence            34678889999999 999999999999999999887  4688999999999999999 4999877666655443    45


Q ss_pred             HHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          370 DAETILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       370 eA~~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      +=+.+..++|..++  .|..+|.++..++.
T Consensus       167 ~El~ftt~~I~~nf--SNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  167 EELEFTTKLINDNF--SNYSAWHYRSLLLS  194 (421)
T ss_pred             hHHHHHHHHHhccc--hhhhHHHHHHHHHH
Confidence            66889999999999  89999999988876

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.09  E-value=0.0081  Score=53.98  Aligned_cols=61  Identities=20%  Similarity=0.097  Sum_probs=56.6

Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375          170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      .+.+.|+.+.|.+.|.+++.+.|+....|+.+|......|+++.|.+.|++++  +++|++..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L--~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL--ELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH--cCCccccc
Confidence            45678999999999999999999999999999999999999999999999999  89998754

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.07  E-value=0.32  Score=47.30  Aligned_cols=119  Identities=15%  Similarity=-0.008  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRK------------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED  370 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e  370 (444)
                      ..|.+.+ +-+|+|.++|..+....-..-.            .+.-+.+|++||+.+|++ ...+..+-.+..+...-++
T Consensus         6 ~el~~~v-~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    6 AELNRRV-RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHH-HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHH
Confidence            4678889 9999999999988766544322            467789999999999998 4887777777777788888


Q ss_pred             HHHHHHHHHhhcCCCCcHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          371 AETILNAALDQTGKWEQGELLRTKAKVQLV---QGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      ...-+++++..+|  ++..+|...-.....   .-.++.-...|.++|..........
T Consensus        84 l~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~  139 (321)
T PF08424_consen   84 LAKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR  139 (321)
T ss_pred             HHHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc
Confidence            8999999999999  888888765444333   2357899999999998777665543

>PRK10941 hypothetical protein; Provisional

Probab=96.01  E-value=0.037  Score=52.16  Aligned_cols=73  Identities=21%  Similarity=0.102  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      ...++=.++.+.++++.|+.+.++++.+.|+++.-+-..|.+|.++|.+..|..-++.-+  ..-|+++.+-...
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl--~~~P~dp~a~~ik  255 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV--EQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HhCCCchhHHHHH
Confidence            344666788999999999999999999999999999999999999999999999999999  8999999876543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.99  E-value=0.068  Score=53.20  Aligned_cols=142  Identities=13%  Similarity=0.051  Sum_probs=87.6

Q ss_pred             HHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHcCC---CcchhhhHHHHHhhh
Q 013375          204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRA-LECLGD---GCDQMESTANCLLGI  279 (444)
Q Consensus       204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~a-l~~~~~---~~~~~~~~a~~~lg~  279 (444)
                      .|..+.+..-+..-.+.+.  -...+.+.+.+..+...|.+ |++..|++.+-.. +...+.   .+.-..-..|.++|.
T Consensus       215 ~llq~~~Lk~~krevK~vm--n~a~~s~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc  291 (696)
T KOG2471|consen  215 FLLQTRNLKLAKREVKHVM--NIAQDSSMALLLKSQLEYAH-GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC  291 (696)
T ss_pred             HHHHHHHHHHHHHhhhhhh--hhcCCCcHHHHHHHHHHHHh-cchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence            3455556666666666666  55556666666666666654 4555555443211 111111   000112345778888


Q ss_pred             hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh---------hCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013375          280 SLSAQSKVAITDFDRATRQAKALQALVSAARS---------TNM---------RDLSILYRLSLEYAEQRKLNAAHYYAK  341 (444)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~---------~~P---------~~~~a~~~lg~~~~~~g~~~~A~~~~~  341 (444)
                      +.++.           +.|.-++..|.+|+ +         +.|         ..-+++||.|..|...|+.-.|.++|.
T Consensus       292 Ih~~~-----------~~y~~~~~~F~kAL-~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~  359 (696)
T KOG2471|consen  292 IHYQL-----------GCYQASSVLFLKAL-RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ  359 (696)
T ss_pred             Eeeeh-----------hhHHHHHHHHHHHH-HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence            87765           45667777777777 5         111         345677888888888888888888888


Q ss_pred             HHHhhcCCCChHHHHHHHHH
Q 013375          342 MLLKLEGGSNLKGWLLMARI  361 (444)
Q Consensus       342 ~al~l~P~~~~~~~~~la~~  361 (444)
                      +++..--.+| ..|..++.+
T Consensus       360 ~av~vfh~nP-rlWLRlAEc  378 (696)
T KOG2471|consen  360 KAVHVFHRNP-RLWLRLAEC  378 (696)
T ss_pred             HHHHHHhcCc-HHHHHHHHH
Confidence            8888777776 888887765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.92  E-value=0.081  Score=52.90  Aligned_cols=89  Identities=10%  Similarity=0.090  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC-HHHHHHHHHHH
Q 013375          300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR-YEDAETILNAA  378 (444)
Q Consensus       300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~-~~eA~~~~~~a  378 (444)
                      .-...|++|+ ..-|.|+..|.+......+.+.+.+--..|.+++..+|+++ ..|..-|.-.+.-+. .+.|.+.+.++
T Consensus        89 rIv~lyr~at-~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~-dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRAT-NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP-DLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc-hhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            4466888999 88899999998877777777778899999999999999985 999988887777776 88888999999


Q ss_pred             HhhcCCCCcHHHHH
Q 013375          379 LDQTGKWEQGELLR  392 (444)
Q Consensus       379 l~~~P~~~~~~~~~  392 (444)
                      |..+|  +++.+|.
T Consensus       167 LR~np--dsp~Lw~  178 (568)
T KOG2396|consen  167 LRFNP--DSPKLWK  178 (568)
T ss_pred             hhcCC--CChHHHH
Confidence            99999  7777664

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.91  E-value=0.014  Score=52.46  Aligned_cols=54  Identities=15%  Similarity=0.037  Sum_probs=32.2

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ++.+.|.+.|.+++ .+-|+....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus         9 ~D~~aaaely~qal-~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           9 GDAEAAAELYNQAL-ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             CChHHHHHHHHHHh-hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45555556666666 5666666666666655555666666666666666666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.90  E-value=0.24  Score=48.90  Aligned_cols=106  Identities=18%  Similarity=0.096  Sum_probs=80.9

Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc---------CC-----C------------CCCHH---HHHHHHH
Q 013375          153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL---------PG-----I------------INRKE---RYHILAL  203 (444)
Q Consensus       153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al---------~~-----~------------p~~~~---~~~~la~  203 (444)
                      ++..+|...+.+..++.++..+|+++.|.+..+|||         .+     +            ++|-.   +.+....
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            468899999999999999999999999999999984         11     1            22222   4556688


Q ss_pred             HHHHCCCchHHHHHHHHhhcCCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013375          204 CYYGAGEDLVALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALE  260 (444)
Q Consensus       204 ~l~~~g~~~~A~~~~~~al~~~~~P~-~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~  260 (444)
                      .+.+.|-+..|.+..+-.+  .+||+ ||...++....+.-+.++++-=+..++....
T Consensus       112 ~L~~RG~~rTAlE~~KlLl--sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLL--SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHH--hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            8999999999999999999  99999 8876555545444456777655666555443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.88  E-value=0.15  Score=43.80  Aligned_cols=110  Identities=14%  Similarity=-0.034  Sum_probs=78.1

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      +.+..+++...+...- -+.|..++.-..-|+++...|++.+|+..++.+.+-.|..+ .+--.++.++..+|+.+= ..
T Consensus        22 ~~~~~~D~e~lL~ALr-vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p-~~kALlA~CL~~~~D~~W-r~   98 (160)
T PF09613_consen   22 RLGDPDDAEALLDALR-VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP-YAKALLALCLYALGDPSW-RR   98 (160)
T ss_pred             ccCChHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHcCChHH-HH
Confidence            4567788888888887 89999999999999999999999999999999888888875 788888999988887541 12


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET  410 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~  410 (444)
                      +-+.+++..|   ++.+.. +...+....+...|...
T Consensus        99 ~A~evle~~~---d~~a~~-Lv~~Ll~~~~~~~a~~~  131 (160)
T PF09613_consen   99 YADEVLESGA---DPDARA-LVRALLARADLEPAHEA  131 (160)
T ss_pred             HHHHHHhcCC---ChHHHH-HHHHHHHhccccchhhh
Confidence            2344555554   333333 33333444444444443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=2.3  Score=42.77  Aligned_cols=121  Identities=17%  Similarity=0.045  Sum_probs=83.1

Q ss_pred             HhhHHHHHHHHHHHHHh---hCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH--HHHHHHHHH
Q 013375          295 ATRQAKALQALVSAARS---TNMR-------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK--GWLLMARIL  362 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~---~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~--~~~~la~~l  362 (444)
                      .|++.+|++....+. .   .-|.       .+..++-+|.-....|.++.|...|..|+++-..-...  +-.++|.+|
T Consensus       336 ~~~~~~al~~i~dm~-~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y  414 (629)
T KOG2300|consen  336 RGDYVEALEEIVDMK-NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY  414 (629)
T ss_pred             hCCHHHHHHHHHHHH-HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence            467777777665554 4   3344       45567788888788899999999999998876542122  345778889


Q ss_pred             HHccCHHHHHHHHHHHHhhcCCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          363 SAQKRYEDAETILNAALDQTGKWE--------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       363 ~~~g~~~eA~~~~~~al~~~P~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      ...|+-++--+..+.   +.|.+.        -..+++..|.....++++.||....++.|++..
T Consensus       415 L~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman  476 (629)
T KOG2300|consen  415 LRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN  476 (629)
T ss_pred             HHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence            888876553333332   345111        135677788888899999999999999988773

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.85  E-value=0.88  Score=39.50  Aligned_cols=49  Identities=14%  Similarity=0.061  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 013375          313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS  363 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~  363 (444)
                      +|--..+.-.||..-++.|++.+|...|.+... +...| ....+.+.+.+
T Consensus       163 n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~ap-rnirqRAq~ml  211 (221)
T COG4649         163 NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAP-RNIRQRAQIML  211 (221)
T ss_pred             ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCc-HHHHHHHHHHH
Confidence            333344556667777777777777777777655 44433 45555555443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.82  E-value=0.081  Score=42.25  Aligned_cols=45  Identities=16%  Similarity=0.032  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      ++.++.++..+.|  +.+..++.+|.-+.-..-|++++.-.+++|.+
T Consensus        63 sve~~s~a~~Lsp--~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   63 SVECFSRAVELSP--DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHhccCh--hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            6778888888888  77777777777655555666676666666654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.72  E-value=0.065  Score=54.47  Aligned_cols=122  Identities=15%  Similarity=0.074  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHH--HHH-HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          299 AKALQALVSAARSTNMRDLSIL--YRL-SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       299 ~eA~~~~~~al~~~~P~~~~a~--~~l-g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      ++-+..+-..+ -..|. ...|  .|+ |+-+..+|+...|++++.+|+-+.|........+|+.++...|-.-+|-..+
T Consensus       588 e~e~~~~~~~~-~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l  665 (886)
T KOG4507|consen  588 EEEIGSFLFHA-INKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLL  665 (886)
T ss_pred             HHHHHHHHHHH-hcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHH
Confidence            34455555544 33444 3344  233 4444557899999999999998888764467788899998888888899999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      .+++.+..  .-+..++.+|..+..+.+.+.|+++++.++++.|+..+-
T Consensus       666 ~q~l~~~~--sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  666 LQALAINS--SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC  712 (886)
T ss_pred             HHHHhhcc--cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence            99988876  567778888999999999999999999999888776653

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.64  E-value=0.012  Score=59.60  Aligned_cols=100  Identities=15%  Similarity=0.012  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      |+...|++++..|+ -..|.... .+.+|+.++..-|-.-+|-..+.+++.++-..| -.++.+|..+..+.+.+.|++.
T Consensus       621 gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-l~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  621 GNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP-LTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             CCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-hHHHhcchhHHHHhhhHHHHHH
Confidence            77789999999999 88887654 568999999999999999999999999997776 7888999999999999999999


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      ++.|++.+|  ++.+....+-.+-.
T Consensus       699 ~~~a~~~~~--~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  699 FRQALKLTT--KCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHhcCC--CChhhHHHHHHHHH
Confidence            999999999  78887766655544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.45  E-value=0.48  Score=40.66  Aligned_cols=83  Identities=12%  Similarity=-0.060  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      .+..+..+-...++.+++...+...-.+.|..+ +.-..-|+++...|++.+|+..++.+.+..|  ..+.+--.++.++
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~-e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~--~~p~~kALlA~CL   88 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFP-ELDLFDGWLHIVRGDWDDALRLLRELEERAP--GFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CChHHHHHHHHHH
Confidence            344445555567799999999999999999995 9999999999999999999999999988888  7777667777777


Q ss_pred             HHhCCH
Q 013375          399 LVQGQL  404 (444)
Q Consensus       399 ~~~g~~  404 (444)
                      ..+|+.
T Consensus        89 ~~~~D~   94 (160)
T PF09613_consen   89 YALGDP   94 (160)
T ss_pred             HHcCCh
Confidence            777654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.33  E-value=2.6  Score=43.50  Aligned_cols=230  Identities=12%  Similarity=-0.062  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG  242 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~  242 (444)
                      .|......-...|+++...-.|++++--...+.+.|++.+.-....|+..-|-.++..+.+ -.-|+-+..+++.+.++ 
T Consensus       299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~-i~~k~~~~i~L~~a~f~-  376 (577)
T KOG1258|consen  299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK-IHVKKTPIIHLLEARFE-  376 (577)
T ss_pred             HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh-hcCCCCcHHHHHHHHHH-
Confidence            5555555666789999999999999999999999999999999999999999999999985 46788888888878776 


Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH---HHHHHHHHhhCCCCHHH
Q 013375          243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL---QALVSAARSTNMRDLSI  319 (444)
Q Consensus       243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~---~~~~~al~~~~P~~~~a  319 (444)
                      ...|+++.|...+++..+..|.-    ........+.-+            +.|..+.+.   +.+....  ..-.+...
T Consensus       377 e~~~n~~~A~~~lq~i~~e~pg~----v~~~l~~~~~e~------------r~~~~~~~~~~~~l~s~~~--~~~~~~~i  438 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESEYPGL----VEVVLRKINWER------------RKGNLEDANYKNELYSSIY--EGKENNGI  438 (577)
T ss_pred             HhhccHHHHHHHHHHHHhhCCch----hhhHHHHHhHHH------------HhcchhhhhHHHHHHHHhc--ccccCcch
Confidence            45689999999999999977321    111222222222            334455555   3333332  33333333


Q ss_pred             H----HHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhhcCCCCcHH
Q 013375          320 L----YRLSLEY-AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-----RYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       320 ~----~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g-----~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      .    ...+... .-.++.+.|...+.+++...|++ ...|..+-.+...++     ++-+-+....-.....+  ++..
T Consensus       439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~--~~~~  515 (577)
T KOG1258|consen  439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDC-KVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDF--DDSR  515 (577)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccc--cccc
Confidence            3    2333332 33579999999999999999998 488888877777665     22233322222223334  4444


Q ss_pred             HHHHH-HHHHHHhCCHHHHHHHHHHHH
Q 013375          390 LLRTK-AKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       390 ~~~~l-a~~~~~~g~~~~A~~~~~~al  415 (444)
                      ..-.+ -.-..-.|....+.+.-+..+
T Consensus       516 ~~~~k~~ef~e~~g~~~~~~~~~~~~l  542 (577)
T KOG1258|consen  516 SSTDKYIEFLEWFGIDHKGAQDERPHL  542 (577)
T ss_pred             cchHHHHHHHHhccchhHhHhhchHHH
Confidence            33333 233334455555555544443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.21  E-value=0.045  Score=35.07  Aligned_cols=29  Identities=24%  Similarity=0.249  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKL  346 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l  346 (444)
                      .++.+||.+|..+|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34555555555556666666555555554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.13  E-value=0.11  Score=52.00  Aligned_cols=84  Identities=12%  Similarity=-0.027  Sum_probs=73.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHhhcCCCCC
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDP  228 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~-~~~A~~~~~~al~~~~~P  228 (444)
                      ++.++.+.+.|+..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.=.+..+. .+.|...|.++|  +.+|
T Consensus        94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL--R~np  171 (568)
T KOG2396|consen   94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL--RFNP  171 (568)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh--hcCC
Confidence            4556677889999999887766677779999999999999999999999999998888887 899999999999  9999


Q ss_pred             CChHHHH
Q 013375          229 KCLPALL  235 (444)
Q Consensus       229 ~~~~a~~  235 (444)
                      +++..+.
T Consensus       172 dsp~Lw~  178 (568)
T KOG2396|consen  172 DSPKLWK  178 (568)
T ss_pred             CChHHHH
Confidence            9998764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.08  E-value=0.13  Score=51.70  Aligned_cols=86  Identities=16%  Similarity=0.060  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~  372 (444)
                      +....|+..|.+++ +.-|+....+.+.+.++.+.   |+.-.|+..+-.|+++||-. ..+|+.|+.++..++++.+|+
T Consensus       388 ~~~~~~i~~~s~a~-q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  388 SIVSGAISHYSRAI-QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             HHHHHHHHHHHHHh-hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHhh
Confidence            34578999999999 99999999999999888875   57778999999999999998 699999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 013375          373 TILNAALDQTG  383 (444)
Q Consensus       373 ~~~~~al~~~P  383 (444)
                      .+-..+...+|
T Consensus       466 ~~~~alq~~~P  476 (758)
T KOG1310|consen  466 SCHWALQMSFP  476 (758)
T ss_pred             hhHHHHhhcCc
Confidence            99988888888

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.95  E-value=0.2  Score=45.64  Aligned_cols=85  Identities=12%  Similarity=0.120  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHHHHhh----CCCC---HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhcCC-----CChHHHH
Q 013375          296 TRQAKALQALVSAARST----NMRD---LSILYRLSLEYAEQRKLN-------AAHYYAKMLLKLEGG-----SNLKGWL  356 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~----~P~~---~~a~~~lg~~~~~~g~~~-------~A~~~~~~al~l~P~-----~~~~~~~  356 (444)
                      ..+++|++.|.-|+ -.    .+++   +..+..+||+|..+|+.+       .|++.|.++++-...     +.....+
T Consensus        91 Rt~~~ai~~YkLAl-l~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLAL-LCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            45667777666554 21    1111   234455666666666532       344444444432211     0013444


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhh
Q 013375          357 LMARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       357 ~la~~l~~~g~~~eA~~~~~~al~~  381 (444)
                      .+|.+..+.|++++|+.+|.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            5555555555555555555555544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.95  E-value=4.5  Score=40.44  Aligned_cols=241  Identities=10%  Similarity=0.013  Sum_probs=146.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK  229 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~  229 (444)
                      .+.++.-.|-.+++|+....-+...++-+.|...-+++++..|.   .++.++..+...++-++-..+|+++++ .+.-.
T Consensus       291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q-~L~r~  366 (660)
T COG5107         291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ-DLKRK  366 (660)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH-HHHHH
Confidence            35556666888899998888888889999999988888877776   777888888888888777788888872 11100


Q ss_pred             ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH-HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375          230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC-LLGISLSAQSKVAITDFDRATRQAKALQALVSA  308 (444)
Q Consensus       230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~-~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a  308 (444)
                      ...   .-+.+.-...|+++-.-+..-+-+..        ...+|. .+..+.            |..-...|...|-++
T Consensus       367 ys~---~~s~~~s~~D~N~e~~~Ell~kr~~k--------~t~v~C~~~N~v~------------r~~Gl~aaR~~F~k~  423 (660)
T COG5107         367 YSM---GESESASKVDNNFEYSKELLLKRINK--------LTFVFCVHLNYVL------------RKRGLEAARKLFIKL  423 (660)
T ss_pred             Hhh---hhhhhhccccCCccccHHHHHHHHhh--------hhhHHHHHHHHHH------------HHhhHHHHHHHHHHH
Confidence            000   00000000111111000000000000        011111 111111            223356777788877


Q ss_pred             HHhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013375          309 ARSTNMRDLSILYRLS-LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ  387 (444)
Q Consensus       309 l~~~~P~~~~a~~~lg-~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~  387 (444)
                      - +..=-.++++..-| .-+.-+|++..|-..|+-.+...||++ ..-...-..+...++-..|.+.|+++++.-.+..-
T Consensus       424 r-k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~-~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~  501 (660)
T COG5107         424 R-KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDST-LYKEKYLLFLIRINDEENARALFETSVERLEKTQL  501 (660)
T ss_pred             h-ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence            6 44324444444333 335567899999999999999999874 55455556677788888999999988865431122


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      ..+|--.-.-...-|+...+...=++..++.|
T Consensus       502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p  533 (660)
T COG5107         502 KRIYDKMIEYESMVGSLNNVYSLEERFRELVP  533 (660)
T ss_pred             hHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence            45666666666777888877777777777766

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.82  E-value=1.1  Score=46.06  Aligned_cols=65  Identities=15%  Similarity=0.005  Sum_probs=41.1

Q ss_pred             cCCHHHHHHHHHhhcCCCCCCHHHHHH--HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          174 AGDLSSLATQIEELLPGIINRKERYHI--LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       174 ~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      .|....++..+..-+.++|.+++....  +...+...++...+...+..++  ..+|++..++.+++..
T Consensus        44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~L~~a  110 (620)
T COG3914          44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPL--SVNPENCPAVQNLAAA  110 (620)
T ss_pred             cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhH--hcCcccchHHHHHHHH
Confidence            344444666666666777777766433  3666666677767777777777  6777776666555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.56  E-value=0.52  Score=39.83  Aligned_cols=74  Identities=18%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE  369 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~  369 (444)
                      +.++.+++...+...- -+.|+.+++-..-|+++...|++.+|+..++...+-.|..+ -+--+++.++..+|+.+
T Consensus        22 ~~~d~~D~e~lLdALr-vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        22 RSADPYDAQAMLDALR-VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-YGKALLALCLNAKGDAE   95 (153)
T ss_pred             hcCCHHHHHHHHHHHH-HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-HHHHHHHHHHHhcCChH
Confidence            3456667777776666 77788888877888888888888888888877777666654 56666677776666543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=1.7  Score=44.25  Aligned_cols=67  Identities=19%  Similarity=0.012  Sum_probs=48.1

Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      ..+.|+++....+-+..+...|+.+.|+..++..++  +.--    --++.+|.++.-+-+|..|-..+....
T Consensus       260 ~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~  330 (546)
T KOG3783|consen  260 RKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR  330 (546)
T ss_pred             HHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            355677777777778888888887788888887777  2221    234567777777788888888888877

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.93  Score=44.57  Aligned_cols=170  Identities=15%  Similarity=0.054  Sum_probs=114.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCc--hHHH
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSI------------AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGED--LVAL  215 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~--~~A~  215 (444)
                      ...++..+|+...+|+..-.++..            +.-.++-+...+.+++.+|+...+|+.+.-++.+.+..  ..=+
T Consensus        52 t~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL  131 (421)
T KOG0529|consen   52 TSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTEL  131 (421)
T ss_pred             HHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHH
Confidence            355678888888877755443332            12456667888999999999999999999999988754  6778


Q ss_pred             HHHHHhhcCCCCCCChHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh-hhhhch
Q 013375          216 NLLRTLLSGSEDPKCLPALLIASKIC---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS-KVAITD  291 (444)
Q Consensus       216 ~~~~~al~~~~~P~~~~a~~~~~~~~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~-~~~~~~  291 (444)
                      +...+++  +.||.|..++.+.--+.   -...+...+=+.+.+++|.....     +..||.+....+...- +.....
T Consensus       132 ~lcek~L--~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfS-----NYsaWhyRs~lL~~l~~~~~~g~  204 (421)
T KOG0529|consen  132 QLCEKAL--KQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFS-----NYSAWHYRSLLLSTLHPKEADGN  204 (421)
T ss_pred             HHHHHHH--hcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccch-----hhhHHHHHHHHHHHhccccccCc
Confidence            9999999  89999988875433222   12223356778888999884222     2457777766655321 100000


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375          292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY  327 (444)
Q Consensus       292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~  327 (444)
                      .........-++....|+ -.||+|..+|++.=+.+
T Consensus       205 ~~~~~~l~sEle~v~sai-FTdp~DqS~WfY~rWLl  239 (421)
T KOG0529|consen  205 FMPKELLQSELEMVHSAI-FTDPEDQSCWFYHRWLL  239 (421)
T ss_pred             cCCHHHHHHHHHHHHHHH-hcCccccceeeehHHhh
Confidence            001123456678888999 99999999997754443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.47  E-value=0.2  Score=49.87  Aligned_cols=123  Identities=15%  Similarity=0.084  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      |+.-.|-.-...++ +..|.+|......+.+....|.|+.|...+.-+-.+-..-. .+..-+-..+.++||+++|...-
T Consensus       303 gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        303 GDIIAASQQLFAAL-RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-STLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             cCHHHHHHHHHHHH-HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-hHHHHHHHhhhchhhHHHHHHHH
Confidence            56677788888899 99999999999999999999999999998877755444332 45555556778899999999999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .-.+...-  +++++...-+..-..+|-+|++.-.|++++.+.|..+
T Consensus       381 ~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        381 EMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            88886655  6677777777777889999999999999999988544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.47  E-value=0.52  Score=42.94  Aligned_cols=88  Identities=15%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHhhcCCCC------CCHHHHH
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWD--PSILDHLSFAFSIAGDL-------SSLATQIEELLPGII------NRKERYH  199 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~--~~~~~~lg~~l~~~g~~-------~~A~~~~~~al~~~p------~~~~~~~  199 (444)
                      ...+++|+..+..++.-..+...+..  ...+..++-+|...|+.       ..|.+.|++++....      +.....|
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            34678888877555433332322222  34667778888888884       445556666654332      2346777


Q ss_pred             HHHHHHHHCCCchHHHHHHHHhh
Q 013375          200 ILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       200 ~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .+|.+..+.|++++|...|.+++
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Confidence            78888888888888888888888

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=94.47  E-value=1.4  Score=42.17  Aligned_cols=192  Identities=15%  Similarity=0.076  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013375          178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASR  257 (444)
Q Consensus       178 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~  257 (444)
                      ++|+..-+-...+-|+.|+++-.++.+++..-+...=...=-..+  -+...+...|         ..+..+++.....+
T Consensus       213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~v--lL~dQDr~lW---------~r~lI~eg~all~r  281 (415)
T COG4941         213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPV--LLEDQDRSLW---------DRALIDEGLALLDR  281 (415)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCee--eccccchhhh---------hHHHHHHHHHHHHH
Confidence            566666666666677777777666666655433222000000001  1111121111         12334577777777


Q ss_pred             HHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013375          258 ALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH  337 (444)
Q Consensus       258 al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~  337 (444)
                      ++..-.+.+.    .....+..++......+      ..++. +|..+=.++ ..--.+|-+-.|.+.+..+..-.+.++
T Consensus       282 A~~~~~pGPY----qlqAAIaa~HA~a~~ae------dtDW~-~I~aLYdaL-~~~apSPvV~LNRAVAla~~~Gp~agL  349 (415)
T COG4941         282 ALASRRPGPY----QLQAAIAALHARARRAE------DTDWP-AIDALYDAL-EQAAPSPVVTLNRAVALAMREGPAAGL  349 (415)
T ss_pred             HHHcCCCChH----HHHHHHHHHHHhhcccC------CCChH-HHHHHHHHH-HHhCCCCeEeehHHHHHHHhhhHHhHH
Confidence            7764333321    11111222221111100      11233 333333344 344445666667777777666677777


Q ss_pred             HHHHHHHhh---cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013375          338 YYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK  396 (444)
Q Consensus       338 ~~~~~al~l---~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~  396 (444)
                      ...+...+-   +.-+  ..|-..|.++..+|+.+||...|++|+.+.+  +..+..+.+..
T Consensus       350 a~ve~L~~~~~L~gy~--~~h~~RadlL~rLgr~~eAr~aydrAi~La~--~~aer~~l~~r  407 (415)
T COG4941         350 AMVEALLARPRLDGYH--LYHAARADLLARLGRVEEARAAYDRAIALAR--NAAERAFLRQR  407 (415)
T ss_pred             HHHHHhhccccccccc--ccHHHHHHHHHHhCChHHHHHHHHHHHHhcC--ChHHHHHHHHH
Confidence            776665542   2111  4555667777777888888888888887777  55555554443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.46  E-value=0.28  Score=40.60  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          296 TRQAKALQALVSAARS-TNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~-~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      .+..+.+..++..+ + -+|.. -+-.|+|+..+++.|+|++++.+++..++..|+++ ++.-+.
T Consensus        49 ~dv~~GI~iLe~l~-~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-Qa~~Lk  111 (149)
T KOG3364|consen   49 EDVQEGIVILEDLL-KSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-QALELK  111 (149)
T ss_pred             HHHHHhHHHHHHHh-hhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH-HHHHHH
Confidence            45678999999999 6 44443 46789999999999999999999999999999995 766543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.43  E-value=2.4  Score=36.93  Aligned_cols=28  Identities=7%  Similarity=0.012  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375           65 AVELLPELWKLADAPRETIMSYRRALLP   92 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~   92 (444)
                      +..+.+.+..+.|+..+|+..|..+-.-
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~d  123 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAAD  123 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence            5666777888889999999999887665

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.33  E-value=3.6  Score=38.37  Aligned_cols=208  Identities=13%  Similarity=0.160  Sum_probs=123.4

Q ss_pred             cCCHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013375          174 AGDLSSLATQIEELLPGIINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE  249 (444)
Q Consensus       174 ~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~  249 (444)
                      ..++++|+..|++++++.|+..+    +.-+.-.+.+++|++++-...|++.+          .+. ...+-   .+..+
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL----------TYI-kSAVT---rNySE  105 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL----------TYI-KSAVT---RNYSE  105 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH----------HHH-HHHHh---ccccH
Confidence            34889999999999999887765    34456677888888888888888888          122 11111   12222


Q ss_pred             HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHH----HHHH
Q 013375          250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY----RLSL  325 (444)
Q Consensus       250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~----~lg~  325 (444)
                      ..+...-..+..   +         -+++..              ..-++..+++++      +..|-..|+    .||.
T Consensus       106 KsIN~IlDyiSt---S---------~~m~LL--------------Q~FYeTTL~ALk------dAKNeRLWFKTNtKLgk  153 (440)
T KOG1464|consen  106 KSINSILDYIST---S---------KNMDLL--------------QEFYETTLDALK------DAKNERLWFKTNTKLGK  153 (440)
T ss_pred             HHHHHHHHHHhh---h---------hhhHHH--------------HHHHHHHHHHHH------hhhcceeeeeccchHhh
Confidence            222222111110   0         000000              011222232222      333445554    7899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH-
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGGSN-----------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT-  393 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~~~-----------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~-  393 (444)
                      ++...+.+.+-.+.+++.-.-.....           .+.|-.--.+|..+++-..-...|++++....-..++.++-. 
T Consensus       154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvI  233 (440)
T KOG1464|consen  154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVI  233 (440)
T ss_pred             hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHH
Confidence            99988888777666666543222110           133444456788888888888899999976431013333322 


Q ss_pred             ---HHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013375          394 ---KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF  431 (444)
Q Consensus       394 ---la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  431 (444)
                         -|....+.|++++|-..|=.|+.    +++.+|++.++
T Consensus       234 RECGGKMHlreg~fe~AhTDFFEAFK----NYDEsGspRRt  270 (440)
T KOG1464|consen  234 RECGGKMHLREGEFEKAHTDFFEAFK----NYDESGSPRRT  270 (440)
T ss_pred             HHcCCccccccchHHHHHhHHHHHHh----cccccCCcchh
Confidence               24566788999999988888774    67789999887

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.29  E-value=4.8  Score=37.86  Aligned_cols=129  Identities=9%  Similarity=-0.076  Sum_probs=63.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh---------------cCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013375          189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGSEDPKCLPALLIASKICGEYPDLAEEGAT  253 (444)
Q Consensus       189 ~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al---------------~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~  253 (444)
                      ...-++++.|..+|..|++.|++.+|..+|-.+-               . .-.|.....+...+-+.+--.++...|..
T Consensus        84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~-~~~~~e~dlfi~RaVL~yL~l~n~~~A~~  162 (260)
T PF04190_consen   84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST-KGYPSEADLFIARAVLQYLCLGNLRDANE  162 (260)
T ss_dssp             S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH-HTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH-hcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence            3344678888888888888888888887764321               1 33455555444444444444677777777


Q ss_pred             HHHHHHHH----cCC---------CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          254 FASRALEC----LGD---------GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       254 ~~~~al~~----~~~---------~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                      .+...++.    .|.         ...+...-.++.+-.|-..          ....+..-.+.|+..+ +.||.-...+
T Consensus       163 ~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~----------~~~~F~~L~~~Y~~~L-~rd~~~~~~L  231 (260)
T PF04190_consen  163 LFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD----------NLPLFKKLCEKYKPSL-KRDPSFKEYL  231 (260)
T ss_dssp             HHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-----------HHHHHHHHHHTHH----HHHHTHHHH
T ss_pred             HHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC----------cHHHHHHHHHHhCccc-cccHHHHHHH
Confidence            76666654    111         0111111222222222211          0123445555666666 6666666677


Q ss_pred             HHHHHHHHH
Q 013375          321 YRLSLEYAE  329 (444)
Q Consensus       321 ~~lg~~~~~  329 (444)
                      ..+|..|.-
T Consensus       232 ~~IG~~yFg  240 (260)
T PF04190_consen  232 DKIGQLYFG  240 (260)
T ss_dssp             HHHHHHHH-
T ss_pred             HHHHHHHCC
Confidence            777777664

; PDB: 3LKU_E 2WPV_G.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.20  E-value=0.15  Score=31.93  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhcCC
Q 013375          318 SILYRLSLEYAEQRKLNAAHYY--AKMLLKLEGG  349 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~--~~~al~l~P~  349 (444)
                      +.++.+|..+..+|++++|++.  |+-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4566677777777777777777  4466666664

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.08  E-value=0.35  Score=37.70  Aligned_cols=34  Identities=12%  Similarity=0.121  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       390 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +..++|.+....|++++|+..+++++++.++..+
T Consensus        43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            3444555555555555555555555555554443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.05  E-value=9.9  Score=40.56  Aligned_cols=367  Identities=14%  Similarity=0.055  Sum_probs=187.9

Q ss_pred             HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH----HHHhhhcCCCCCCCCccccHHHHH-HHHHHHHHHHHH-HhCCh
Q 013375            6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILD----IVESSFAEGFPENLGADCKLQETL-NRAVELLPELWK-LADAP   79 (444)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~l~~~~~-~~g~~   79 (444)
                      +--++|-+..++-..-..-+-++-.+.|.+.|.    -.+....+..+.         +.. ..+..++|.+++ ...++
T Consensus         6 ll~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~~ai~CL~~~~~~~~l~---------p~~ea~~~l~la~iL~~eT~n~   76 (608)
T PF10345_consen    6 LLSLAEEYLEKAHSLATKVKSEEQLKQYYKLIATAIKCLEAVLKQFKLS---------PRQEARVRLRLASILLEETENL   76 (608)
T ss_pred             HHHHHHHHHHHhHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhccCCCC---------HHHHHHHHHHHHHHHHHHcCCH
Confidence            334566666666555444455566666665443    222222111111         111 245556666655 89999


Q ss_pred             HHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC
Q 013375           80 RETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW  159 (444)
Q Consensus        80 ~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~  159 (444)
                      ++|+.++.+++.+...  +. ...+.... ..++.               .++...+.. .|...+...+..  ....+.
T Consensus        77 ~~Ae~~L~k~~~l~~~--~~-~~d~k~~~-~~ll~---------------~i~~~~~~~-~a~~~l~~~I~~--~~~~~~  134 (608)
T PF10345_consen   77 DLAETYLEKAILLCER--HR-LTDLKFRC-QFLLA---------------RIYFKTNPK-AALKNLDKAIED--SETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHhccc--cc-hHHHHHHH-HHHHH---------------HHHHhcCHH-HHHHHHHHHHHH--HhccCc
Confidence            9999999999887311  11 11111111 11111               112222222 254443221111  111233


Q ss_pred             CHHHHH--HH-HHHHHhcCCHHHHHHHHHhhcCCC--CCCHHHHHH----HHHHHHHCCCchHHHHHHHHhhcC--C--C
Q 013375          160 DPSILD--HL-SFAFSIAGDLSSLATQIEELLPGI--INRKERYHI----LALCYYGAGEDLVALNLLRTLLSG--S--E  226 (444)
Q Consensus       160 ~~~~~~--~l-g~~l~~~g~~~~A~~~~~~al~~~--p~~~~~~~~----la~~l~~~g~~~~A~~~~~~al~~--~--~  226 (444)
                      ....|.  .+ ...+...+++..|++.++......  ++++.+...    -|.++...+..++++...++++..  .  .
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~  214 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL  214 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence            333332  22 222222379999999999988775  455544333    377778888889999998887410  1  1


Q ss_pred             CCC----ChHHHHHHHHHH-hcCCCCHHHHHH---HHHHHHHHcCCCc-------c------------------------
Q 013375          227 DPK----CLPALLIASKIC-GEYPDLAEEGAT---FASRALECLGDGC-------D------------------------  267 (444)
Q Consensus       227 ~P~----~~~a~~~~~~~~-~~~~~~~~eA~~---~~~~al~~~~~~~-------~------------------------  267 (444)
                      +|+    ...++..+..++ .-..|+.+.+..   .++..++......       +                        
T Consensus       215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl  294 (608)
T PF10345_consen  215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL  294 (608)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence            222    233444443332 223455444444   4444444321110       0                        


Q ss_pred             ---hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC------CCCH-------------------HH
Q 013375          268 ---QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN------MRDL-------------------SI  319 (444)
Q Consensus       268 ---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~------P~~~-------------------~a  319 (444)
                         .....+|+.-|.+...           .+..++|.+.++++++.++      |..+                   ..
T Consensus       295 ~~~~l~~L~y~lS~l~~~~-----------~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~  363 (608)
T PF10345_consen  295 PKEELYALVYFLSGLHNLY-----------KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYL  363 (608)
T ss_pred             CHHHHHHHHHHHHHHHHhh-----------ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHH
Confidence               0111222222332222           1223355555555441111      1111                   13


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--------ChHHHHHHHHHHHHccCHHHHHHHHH--------HHHhhcC
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--------NLKGWLLMARILSAQKRYEDAETILN--------AALDQTG  383 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--------~~~~~~~la~~l~~~g~~~eA~~~~~--------~al~~~P  383 (444)
                      .++.+++..-.+++..|....+.+.......        ....++..|..+...|+.+.|+.+|.        .+....+
T Consensus       364 ~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~  443 (608)
T PF10345_consen  364 LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK  443 (608)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc
Confidence            3577888888999999999999887654221        12668889999999999999999998        4444444


Q ss_pred             CCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          384 KWEQ---GELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       384 ~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                        .+   .-+..|+..++...+...........+++
T Consensus       444 --~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~  477 (608)
T PF10345_consen  444 --FRELYILAALNLAIILQYESSRDDSESELNELLE  477 (608)
T ss_pred             --chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHH
Confidence              22   22334666677666655443333444444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.02  E-value=0.82  Score=40.29  Aligned_cols=99  Identities=18%  Similarity=0.090  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH----HH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG----EL  390 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~----~~  390 (444)
                      ..++..+|..|.+.|++++|++.|.++..-..  .+....++.+-.+-...+++.....++.+|-..-.+..++    .+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            46788999999999999999999999877543  3323566777778888899999999999888654311232    23


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          391 LRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       391 ~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      ....|......++|.+|...|-.++
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence            3455677778888888888776554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.67  E-value=0.4  Score=40.50  Aligned_cols=73  Identities=18%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013375          329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL  404 (444)
Q Consensus       329 ~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~  404 (444)
                      ..++++++...+...--+.|+.+ +.-..-|+++...|++.||+..++...+..|  ..+-..-.++.++..+|+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~-e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLK-ELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAKGDA   94 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCcc-ccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhcCCh
Confidence            37899999999999999999985 8888899999999999999999999998887  5566666677777777754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=93.56  E-value=4.1  Score=39.17  Aligned_cols=125  Identities=14%  Similarity=0.024  Sum_probs=93.5

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED  370 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e  370 (444)
                      +..+++...+.+++....|.-....-.++-++...     -++..=...|.-...+.|+ | ..-.|.+..+....-.+.
T Consensus       270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-P-vV~LNRAVAla~~~Gp~a  347 (415)
T COG4941         270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-P-VVTLNRAVALAMREGPAA  347 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-C-eEeehHHHHHHHhhhHHh
Confidence            45688999999988444566666666677666643     4666667777777778887 5 666677888877777888


Q ss_pred             HHHHHHHHHhhcCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          371 AETILNAALDQTGK-WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       371 A~~~~~~al~~~P~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ++..++...+. |. .+....+-.+|.++.++|+.++|...|++++++..+..+
T Consensus       348 gLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae  400 (415)
T COG4941         348 GLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE  400 (415)
T ss_pred             HHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence            88888776654 21 145667788999999999999999999999999875544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.41  E-value=0.58  Score=46.79  Aligned_cols=111  Identities=18%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375          152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL  231 (444)
Q Consensus       152 ~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~  231 (444)
                      .++.+.|.+|....+.+.+....|+|+.+.+.+.-+=..-..-..+.--+-..+..+|++++|...-.-.+  .-.-.++
T Consensus       314 ~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l--~~eie~~  391 (831)
T PRK15180        314 AALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML--SNEIEDE  391 (831)
T ss_pred             HHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh--ccccCCh
Confidence            56788899999999999999999999999988765544433333444445667888999999999998888  5455555


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 013375          232 PALLIASKICGEYPDLAEEGATFASRALECLGDG  265 (444)
Q Consensus       232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~  265 (444)
                      ++....++. -..++-++++..+.++++.+.|+.
T Consensus       392 ei~~iaa~s-a~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        392 EVLTVAAGS-ADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             hheeeeccc-HHHHhHHHHHHHHHHHHhccCChh
Confidence            544322222 345788999999999999976654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.36  E-value=13  Score=39.67  Aligned_cols=128  Identities=16%  Similarity=0.011  Sum_probs=78.9

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCcccc
Q 013375           54 ADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFV  133 (444)
Q Consensus        54 ~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~  133 (444)
                      .|....+.+.-++..-|...+..|..+.|..+++++++.        ..   +..      ......++.          
T Consensus       292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~--------i~---~~~------~~~~~~~~~----------  344 (608)
T PF10345_consen  292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ--------IE---KLK------IKSPSAPSE----------  344 (608)
T ss_pred             eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH--------HH---Hhh------ccCCCCCCc----------
Confidence            355555555566666677888899999999999999987        11   100      000000000          


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC---CC------CHHHHHHHHHH
Q 013375          134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI---IN------RKERYHILALC  204 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~  204 (444)
                         -..++..-...  +..+      ...+....+....-.|++..|....+.+....   |.      .+..++-.|..
T Consensus       345 ---sl~~~~~~~~~--~~~l------~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~  413 (608)
T PF10345_consen  345 ---SLSEASERIQW--LRYL------QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY  413 (608)
T ss_pred             ---CHHHHHHhHHH--HHHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Confidence               01111110000  0000      11244566777778899988888887666442   22      47789999999


Q ss_pred             HHHCCCchHHHHHHH
Q 013375          205 YYGAGEDLVALNLLR  219 (444)
Q Consensus       205 l~~~g~~~~A~~~~~  219 (444)
                      +...|+.+.|+..|.
T Consensus       414 ~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  414 YQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHcCCHHHHHHHHh
Confidence            999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.96  E-value=0.13  Score=29.58  Aligned_cols=23  Identities=30%  Similarity=0.222  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHCCCchHHHHHHH
Q 013375          197 RYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       197 ~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44555666666666666655544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=92.84  E-value=0.3  Score=49.30  Aligned_cols=87  Identities=10%  Similarity=-0.136  Sum_probs=76.5

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH
Q 013375          330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG  406 (444)
Q Consensus       330 ~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~---g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~  406 (444)
                      .+....|+..|.+++..-|+. ...+.+.+.++++.   |+.-.|+.-+..|++++|  -...+|+.++.++..++++.+
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~-~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~--s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDA-IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP--SIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccch-hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh--HHHHHHHHHHHHHHHHhhHHH
Confidence            356778999999999999998 59999999999887   566678888899999999  889999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013375          407 AVETYTHLLAALQ  419 (444)
Q Consensus       407 A~~~~~~al~l~~  419 (444)
                      |++....+.-..|
T Consensus       464 al~~~~alq~~~P  476 (758)
T KOG1310|consen  464 ALSCHWALQMSFP  476 (758)
T ss_pred             hhhhHHHHhhcCc
Confidence            9998887776666

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.68  E-value=0.18  Score=47.56  Aligned_cols=86  Identities=10%  Similarity=0.070  Sum_probs=69.6

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~-la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      .|.++. -.-|+|+..|...+.-....|-+.+--..|.+++..+|.+ ++.|.. -+.=+...++++.+.+.+.+++..+
T Consensus        95 ~~~R~t-nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N  172 (435)
T COG5191          95 ELYRST-NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMN  172 (435)
T ss_pred             eeehhh-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence            344555 5779999999877766677788999999999999999998 598886 4455677799999999999999999


Q ss_pred             CCCCcHHHHHH
Q 013375          383 GKWEQGELLRT  393 (444)
Q Consensus       383 P~~~~~~~~~~  393 (444)
                      |  +++.+|..
T Consensus       173 ~--~~p~iw~e  181 (435)
T COG5191         173 S--RSPRIWIE  181 (435)
T ss_pred             C--CCchHHHH
Confidence            9  88887764

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.65  E-value=2.4  Score=47.00  Aligned_cols=130  Identities=16%  Similarity=0.058  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS  324 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg  324 (444)
                      .+.++.|+..|+|.-.-+|...+.+  .|.+..|+.+..++......    ..+++|+..|++.-  -.|.-|--+..-|
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~  559 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEGY--EAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLH--GGVGAPLEYLGKA  559 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccch--HHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhc--CCCCCchHHHhHH
Confidence            4578999999999999888766544  57899999988876543221    36889999998765  5677777778888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhcC
Q 013375          325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----KRYEDAETILNAALDQTG  383 (444)
Q Consensus       325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-----g~~~eA~~~~~~al~~~P  383 (444)
                      .+|.++|+++|=++.|.-|++.-|.+| ..-...-.+-.++     .+...|....--++...|
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHP-EISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP  622 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999987 4433222221111     334456566666666667

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=14  Score=38.12  Aligned_cols=168  Identities=15%  Similarity=0.079  Sum_probs=101.9

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCcc-------hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh-----
Q 013375          244 YPDLAEEGATFASRALECLGDGCD-------QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS-----  311 (444)
Q Consensus       244 ~~~~~~eA~~~~~~al~~~~~~~~-------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~-----  311 (444)
                      +.+-+++|...|.-+....+++.-       +++......++.+...+|....    ..+..+.++=.|++++ .     
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~----aadLieR~Ly~~d~a~-hp~F~~  324 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREM----AADLIERGLYVFDRAL-HPNFIP  324 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhh----HHHHHHHHHHHHHHHh-cccccc
Confidence            345566777777766666555421       3445556666666666554321    1234566777777766 3     


Q ss_pred             ---------hCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHHH-HHccCHHHHHHHHHH
Q 013375          312 ---------TNMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARIL-SAQKRYEDAETILNA  377 (444)
Q Consensus       312 ---------~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~l-~~~g~~~eA~~~~~~  377 (444)
                               +.|.|-.   +++..=..+.+.|-+..|.+.++-.+.++|. +| -+...+-.+| ...++|+=-+..++.
T Consensus       325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP-l~~l~~ID~~ALrareYqwiI~~~~~  403 (665)
T KOG2422|consen  325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP-LGILYLIDIYALRAREYQWIIELSNE  403 (665)
T ss_pred             ccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                     1233322   2233334456789999999999999999999 87 4444444444 455667766666555


Q ss_pred             H-----HhhcCCCCcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHh
Q 013375          378 A-----LDQTGKWEQGELLRTKAKVQLVQGQ---LKGAVETYTHLLAALQV  420 (444)
Q Consensus       378 a-----l~~~P~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~  420 (444)
                      .     +.+.|   |...-..+|..+.....   ...|+..+.+|+.+.|.
T Consensus       404 ~e~~n~l~~~P---N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  404 PENMNKLSQLP---NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HHhhccHhhcC---CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            4     44556   33333445555555554   46788888999888883

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.38  E-value=19  Score=39.14  Aligned_cols=241  Identities=15%  Similarity=0.038  Sum_probs=136.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---------CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN---------RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                      .|..-...+-.+....++.+|..+..++-..-|.         ..+..--.|.+....|++++|++..+.++  ..-|.+
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al--~~L~~~  491 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL--VQLPEA  491 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--Hhcccc
Confidence            4444555666777788888888777766544333         11233335888999999999999999999  555553


Q ss_pred             hH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013375          231 LP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA  304 (444)
Q Consensus       231 ~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~  304 (444)
                      ..     +....+.+ ..-.|++++|..+.+.+.+.....+ ..+...+......++..+|..         .+++....
T Consensus       492 ~~~~r~~~~sv~~~a-~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~---------~~a~~~~~  561 (894)
T COG2909         492 AYRSRIVALSVLGEA-AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQV---------ARAEQEKA  561 (894)
T ss_pred             cchhhhhhhhhhhHH-HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHH
Confidence            22     12222222 2236889999999888887532221 111122233334444444421         12333333


Q ss_pred             HH----HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHccCHHHHHHH
Q 013375          305 LV----SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS------NLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       305 ~~----~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      |.    +-+ ...|-+.....-.+.++..--+++.+.....+.+++--..      ..-+...|+.+....|++++|...
T Consensus       562 ~~~~~~q~l-~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~  640 (894)
T COG2909         562 FNLIREQHL-EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ  640 (894)
T ss_pred             HHHHHHHHh-hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            32    233 3445544444333333333333777777777776654321      111234788889999999999988


Q ss_pred             HHHHHhhcCCCC---cH--HHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          375 LNAALDQTGKWE---QG--ELLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       375 ~~~al~~~P~~~---~~--~~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      .+....+--.++   +.  .++.........+|+..+|.....+
T Consensus       641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            887775432101   12  2223333444667888777766655

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.30  E-value=0.19  Score=28.81  Aligned_cols=22  Identities=14%  Similarity=0.002  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYA  340 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~  340 (444)
                      +.+.+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.27  E-value=0.97  Score=42.20  Aligned_cols=73  Identities=15%  Similarity=0.007  Sum_probs=48.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK  396 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~  396 (444)
                      .++=..+.+.++++.|....++.+.++|+++ .-+.-.|.+|..+|-+.-|+..+...++.-|  +++.+-..++.
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp-~eirDrGliY~ql~c~~vAl~dl~~~~~~~P--~~~~a~~ir~~  257 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDP-YEIRDRGLIYAQLGCYHVALEDLSYFVEHCP--DDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCCh-hhccCcHHHHHhcCCchhhHHHHHHHHHhCC--CchHHHHHHHH
Confidence            4445556666777777777777777777774 6666677777777777777777777777777  55554444433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.22  E-value=0.59  Score=44.13  Aligned_cols=62  Identities=13%  Similarity=-0.052  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013375          301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA  364 (444)
Q Consensus       301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~  364 (444)
                      |...|.+|+ .+.|++...++.||.+....|+.=.|+-+|-|++...--++ .+..+|..++.+
T Consensus         1 A~~~Y~~A~-~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~-~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAI-RLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP-SARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHH-HH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H-HHHHHHHHHHHH
T ss_pred             CHHHHHHHH-HhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHH
Confidence            556677777 77777777777777777777777777777777765543343 666666666554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.10  E-value=0.21  Score=47.14  Aligned_cols=78  Identities=9%  Similarity=0.009  Sum_probs=69.6

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHH-HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      .-|.|+.+|.....-....|-+.+--..|-++++.+|.+.+.|.. -+.-+...++++.+...|.+++  +.+|++|..|
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl--R~N~~~p~iw  179 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL--RMNSRSPRIW  179 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh--ccCCCCchHH
Confidence            448999999988877777888899999999999999999999987 5667888899999999999999  9999999877


Q ss_pred             H
Q 013375          235 L  235 (444)
Q Consensus       235 ~  235 (444)
                      .
T Consensus       180 ~  180 (435)
T COG5191         180 I  180 (435)
T ss_pred             H
Confidence            5

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.05  E-value=0.67  Score=36.11  Aligned_cols=56  Identities=18%  Similarity=0.122  Sum_probs=44.1

Q ss_pred             HHcCCHHHHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          328 AEQRKLNAAHYYAKMLLKLEGGSN--------LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       328 ~~~g~~~~A~~~~~~al~l~P~~~--------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .+.|++.+|++.+.+.........        ..++.++|.+....|++++|+..+++|+++..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            457888888888888776554331        24677899999999999999999999998764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.94  E-value=0.41  Score=30.38  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      .++..+|.+-...++|++|+..|+++|+|..+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            356778888888888888888888888887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.77  E-value=1.1  Score=40.01  Aligned_cols=72  Identities=21%  Similarity=0.259  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHccCHHHH
Q 013375          299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~la~~l~~~g~~~eA  371 (444)
                      ++|...|-++-+.-.=++++..+.||..|. ..+.++|+..+-+++++.+.+   ..+.+..|+.++..+|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            466666665542233367778888886665 678888888888888876553   126677777777777777766

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.69  E-value=0.26  Score=30.94  Aligned_cols=33  Identities=24%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHCCCchHHHHHHH--HhhcCCCCCC
Q 013375          195 KERYHILALCYYGAGEDLVALNLLR--TLLSGSEDPK  229 (444)
Q Consensus       195 ~~~~~~la~~l~~~g~~~~A~~~~~--~al~~~~~P~  229 (444)
                      ++.|+.+|-.+...|++++|+..|.  -+.  .++|.
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~--~ld~~   35 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLC--ALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--HHTTT
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHH--Hhccc
Confidence            3567888888888888888888844  555  45554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.64  E-value=11  Score=38.38  Aligned_cols=69  Identities=14%  Similarity=0.053  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      |+++.|.+.      ....+++.-|-.||.....+|+++-|+++|+++=         -+..|..++...|+-+.=....
T Consensus       332 g~L~~A~~~------a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~  396 (443)
T PF04053_consen  332 GNLDIALEI------AKELDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLA  396 (443)
T ss_dssp             T-HHHHHHH------CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred             CCHHHHHHH------HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHH
Confidence            455655544      2334578889999999999999999999998872         1233555666677765544444


Q ss_pred             HHHH
Q 013375          376 NAAL  379 (444)
Q Consensus       376 ~~al  379 (444)
                      +.|.
T Consensus       397 ~~a~  400 (443)
T PF04053_consen  397 KIAE  400 (443)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.59  E-value=39  Score=40.96  Aligned_cols=237  Identities=13%  Similarity=0.061  Sum_probs=137.7

Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013375          170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE  249 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~  249 (444)
                      .+...|++..|.++|+++++.+|+....+...=...+..|.+...+.+.+-..  .-.++...-++..+.-.-...++++
T Consensus      1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~--~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI--INRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred             HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh--hccCHHHHHHHHHHHHHHhhhcchh
Confidence            45667999999999999999999988888888888888999999998888877  4555544444433322223344444


Q ss_pred             HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh-hhc--hH---------------HHHhhHHHH----------
Q 013375          250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV-AIT--DF---------------DRATRQAKA----------  301 (444)
Q Consensus       250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~-~~~--~~---------------~~~~~~~eA----------  301 (444)
                      .-..+..      ..+.+...   ...+|.+.....+. ...  +.               ...+.+..+          
T Consensus      1536 ~~e~~l~------~~n~e~w~---~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1536 LLESYLS------DRNIEYWS---VESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred             hhhhhhh------cccccchh---HHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH
Confidence            3333311      00000000   00022211110000 000  00               000000011          


Q ss_pred             --HHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHH-hh--cCCC---ChHHHHHHHHHHHHccCH
Q 013375          302 --LQALVSAARSTNMRDLS-----ILYRLSLEYAEQRKLNAAHYYAKMLL-KL--EGGS---NLKGWLLMARILSAQKRY  368 (444)
Q Consensus       302 --~~~~~~al~~~~P~~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al-~l--~P~~---~~~~~~~la~~l~~~g~~  368 (444)
                        ++...+.+....|++..     -|-+....=....+..+-+-.+++++ .+  +|+.   -+++|...|.+-...|++
T Consensus      1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred             HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence              11111111022232222     22222222222234555556666663 23  4432   148999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      +-|-.++-+|.+..+    ++++.-+|+.+-.+|+-..|+..+++.++.+...
T Consensus      1687 q~A~nall~A~e~r~----~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRL----PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred             HHHHHHHHhhhhccc----chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence            999999999988765    3778889999999999999999999999887655

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.50  E-value=0.63  Score=43.91  Aligned_cols=62  Identities=16%  Similarity=-0.028  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013375          336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV  400 (444)
Q Consensus       336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~  400 (444)
                      |+.+|.+|+.+.|++ ...|+.+|.+....|+.-+|+-+|-|++-..-  ....+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~--Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI--PFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Confidence            789999999999999 59999999999999999999999999996543  367888888888888

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.34  E-value=2.3  Score=44.10  Aligned_cols=100  Identities=11%  Similarity=0.028  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      ++.+-|.-+.+..+|..+++.|+..+.-=|.+.     +.....+..+|..+.+.|.|+++++.|-+.+|  .++--.+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~--~~~l~q~~  433 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR--QSPLCQLL  433 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc--ccHHHHHH
Confidence            345556667778888888888888887655532     24566788888888888888888888888888  77777777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          394 KAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       394 la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      .-.+....|.-++|+.+..+...+-.+
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            777777778888888877776655443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.25  E-value=18  Score=36.44  Aligned_cols=52  Identities=13%  Similarity=0.029  Sum_probs=46.0

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      |..++.+|+|.++.-+-.=..+.+|   ++.++..+|.++....+|++|+.++..
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP---S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP---SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4557889999999988888888999   889999999999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.06  E-value=21  Score=37.01  Aligned_cols=78  Identities=9%  Similarity=-0.057  Sum_probs=63.7

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-HCCCchHHHHHHHHhhcCCCCC
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYY-GAGEDLVALNLLRTLLSGSEDP  228 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~-~~g~~~~A~~~~~~al~~~~~P  228 (444)
                      ++..|...|-.-..|-..+..-.+.|..+.++..|++++.--|-+.+.|..+-..+. ..|+.+.=...|++|+  ....
T Consensus        68 y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~--~~vG  145 (577)
T KOG1258|consen   68 YDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK--SYVG  145 (577)
T ss_pred             HHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH--Hhcc
Confidence            577888889999999999999999999999999999999999999999988744444 4466666668888888  4444


Q ss_pred             C
Q 013375          229 K  229 (444)
Q Consensus       229 ~  229 (444)
                      .
T Consensus       146 ~  146 (577)
T KOG1258|consen  146 L  146 (577)
T ss_pred             c
Confidence            3

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=90.82  E-value=25  Score=37.34  Aligned_cols=172  Identities=12%  Similarity=-0.095  Sum_probs=84.2

Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH----------HHHHHHHHHCCCchHHHHHHHHhhc
Q 013375          154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY----------HILALCYYGAGEDLVALNLLRTLLS  223 (444)
Q Consensus       154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~l~~~g~~~~A~~~~~~al~  223 (444)
                      ++.+| .|..|.+++..-...-.++-|...|=+.-... + ....          .+.|.+-.--|++++|++.|-.+= 
T Consensus       686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d-  761 (1189)
T KOG2041|consen  686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD-  761 (1189)
T ss_pred             HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-
Confidence            35555 67889988887776666666666665543221 0 1111          223444445588899988886544 


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh--hhhhchHHHHhh---H
Q 013375          224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS--KVAITDFDRATR---Q  298 (444)
Q Consensus       224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~---~  298 (444)
                       +   .+..+-      .....|++-.-...++..   -.+.++...-.|+..+|..+..+-  ..+...+...++   +
T Consensus       762 -r---rDLAie------lr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~  828 (1189)
T KOG2041|consen  762 -R---RDLAIE------LRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQ  828 (1189)
T ss_pred             -h---hhhhHH------HHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Confidence             2   121111      112233321111111100   012223344566777776554321  111111111111   1


Q ss_pred             H------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375          299 A------KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML  343 (444)
Q Consensus       299 ~------eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  343 (444)
                      -      +-..-++... ..=|+|...+-.+|..+...|.-++|++.|-+.
T Consensus       829 ~ecly~le~f~~LE~la-~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLA-RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             HHHHHHHHhhhhHHHHH-HhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence            1      1112234444 555777777777888888888888887777543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=90.79  E-value=10  Score=40.12  Aligned_cols=185  Identities=17%  Similarity=0.062  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh---------cCCCC
Q 013375          177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG---------EYPDL  247 (444)
Q Consensus       177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~---------~~~~~  247 (444)
                      .+.|++..+     +..+|..|-.||..-...-.++-|+..|-++-  . -|.-- ..-.++.+.-         ..-|+
T Consensus       679 ledA~qfiE-----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~--d-Y~Gik-~vkrl~~i~s~~~q~aei~~~~g~  749 (1189)
T KOG2041|consen  679 LEDAIQFIE-----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG--D-YAGIK-LVKRLRTIHSKEQQRAEISAFYGE  749 (1189)
T ss_pred             hHHHHHHHh-----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc--c-ccchh-HHHHhhhhhhHHHHhHhHhhhhcc
Confidence            455555443     34478999999998888888888998888876  2 22210 0000111110         12477


Q ss_pred             HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 013375          248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLS  324 (444)
Q Consensus       248 ~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg  324 (444)
                      ++||.+.|-.+=..              .|++-+.          .+.|++-.-.+.++.--  -+.+|   -.++.++|
T Consensus       750 feeaek~yld~drr--------------DLAielr----------~klgDwfrV~qL~r~g~--~d~dD~~~e~A~r~ig  803 (1189)
T KOG2041|consen  750 FEEAEKLYLDADRR--------------DLAIELR----------KKLGDWFRVYQLIRNGG--SDDDDEGKEDAFRNIG  803 (1189)
T ss_pred             hhHhhhhhhccchh--------------hhhHHHH----------HhhhhHHHHHHHHHccC--CCcchHHHHHHHHHHH
Confidence            88888877432211              1111111          12234444444444321  12222   35788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013375          325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL  404 (444)
Q Consensus       325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~  404 (444)
                      ..++.+..+++|.++|.+.-...         ++..++...+.|++-...    ...-|  ++.+.+--+|..+...|--
T Consensus       804 ~~fa~~~~We~A~~yY~~~~~~e---------~~~ecly~le~f~~LE~l----a~~Lp--e~s~llp~~a~mf~svGMC  868 (1189)
T KOG2041|consen  804 ETFAEMMEWEEAAKYYSYCGDTE---------NQIECLYRLELFGELEVL----ARTLP--EDSELLPVMADMFTSVGMC  868 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHhccchH---------hHHHHHHHHHhhhhHHHH----HHhcC--cccchHHHHHHHHHhhchH
Confidence            88888888888888887763221         123333444555543222    22235  5555555566666666666


Q ss_pred             HHHHHHH
Q 013375          405 KGAVETY  411 (444)
Q Consensus       405 ~~A~~~~  411 (444)
                      ++|+++|
T Consensus       869 ~qAV~a~  875 (1189)
T KOG2041|consen  869 DQAVEAY  875 (1189)
T ss_pred             HHHHHHH
Confidence            6666555

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.76  E-value=2.1  Score=47.45  Aligned_cols=124  Identities=15%  Similarity=0.065  Sum_probs=92.5

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQ----R---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA  364 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~----g---~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~  364 (444)
                      ...|+.|+..|+++. ..-|+-   .++.+.+|..+.++    |   .+++|+..|++... .|.-| --|...|.+|..
T Consensus       488 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~  564 (932)
T PRK13184        488 EKLYDQALIFYRRIR-ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAP-LEYLGKALVYQR  564 (932)
T ss_pred             hHHHHHHHHHHHHHh-hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc-hHHHhHHHHHHH
Confidence            467999999999999 998865   46889999988754    3   57888888887644 45555 678889999999


Q ss_pred             ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhhhh
Q 013375          365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG-----QLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +|+|+|=++++.-|++..|  +++++-..+-.+-.++.     +-..|..-.--++.+.|....
T Consensus       565 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (932)
T PRK13184        565 LGEYNEEIKSLLLALKRYS--QHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS  626 (932)
T ss_pred             hhhHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            9999999999999999999  77766555444433332     224455555566677775444

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.68  E-value=2.4  Score=47.52  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC--
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGK--  384 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~--  384 (444)
                      |++...+.+++......++...|+..+.+++.+.     |++|  +....+++.++...++++.|+.+.+.|++.+-+  
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            4445556666666666666666666666665542     2232  234456666666667777777777777654321  


Q ss_pred             ----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          385 ----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       385 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                          -.....+..++.+..-.|++..|+...+....+.+.+-
T Consensus      1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred             CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh
Confidence                02344455566666666666666666666666665443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=90.66  E-value=20  Score=36.04  Aligned_cols=207  Identities=14%  Similarity=0.012  Sum_probs=129.6

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013375          183 QIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECL  262 (444)
Q Consensus       183 ~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~  262 (444)
                      .|++++..-|-.++.|+....-+...++-+.|+...++++  ...|.   .++.+ ..|+.--++.++--.+|++.++.+
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~--~~sps---L~~~l-se~yel~nd~e~v~~~fdk~~q~L  363 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI--EMSPS---LTMFL-SEYYELVNDEEAVYGCFDKCTQDL  363 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc--cCCCc---hheeH-HHHHhhcccHHHHhhhHHHHHHHH
Confidence            5788888889999999999999999999999999999999  77776   22222 335554555555556677766632


Q ss_pred             CCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013375          263 GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKM  342 (444)
Q Consensus       263 ~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~  342 (444)
                      ..         .+..|..-..-+        ..++++..-+.+-+    ....-.-+|+-+-..-.+..-++.|...|-+
T Consensus       364 ~r---------~ys~~~s~~~s~--------~D~N~e~~~Ell~k----r~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k  422 (660)
T COG5107         364 KR---------KYSMGESESASK--------VDNNFEYSKELLLK----RINKLTFVFCVHLNYVLRKRGLEAARKLFIK  422 (660)
T ss_pred             HH---------HHhhhhhhhhcc--------ccCCccccHHHHHH----HHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            11         111111111000        01222111111111    1112234454444444556678889999999


Q ss_pred             HHhhcCCCChHHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          343 LLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       343 al~l~P~~~~~~~~~la~~-l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      +-+..=-.. ..+..-|.+ +..+|++.-|-.+++-.+..+|  |++..-.-.-.-+...++-..|...|+++++-..
T Consensus       423 ~rk~~~~~h-~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r~~  497 (660)
T COG5107         423 LRKEGIVGH-HVYIYCAFIEYYATGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVERLE  497 (660)
T ss_pred             HhccCCCCc-ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence            876551221 333333333 5678999999999999999999  6665544445566788888999999987775444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.49  E-value=1.2  Score=41.55  Aligned_cols=69  Identities=22%  Similarity=0.036  Sum_probs=61.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375          166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI  236 (444)
Q Consensus       166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~  236 (444)
                      ++=.++.+.++++.|..+-++.+.++|+++.-+--.|.+|.++|.+.-|+..+...+  ..-|+.+.+-..
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~--~~~P~~~~a~~i  254 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV--EHCPDDPIAEMI  254 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH--HhCCCchHHHHH
Confidence            445577889999999999999999999999999999999999999999999999988  788988876543

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=90.42  E-value=12  Score=33.00  Aligned_cols=196  Identities=14%  Similarity=0.030  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHHHHHHHC-CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHcCCCc
Q 013375          192 INRKERYHILALCYYGA-GEDLVALNLLRTLLSGSEDPKCLPALLIASKICG----EYPDLAEEGATFASRALECLGDGC  266 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~-g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~----~~~~~~~eA~~~~~~al~~~~~~~  266 (444)
                      -..|+..+.||.-+... .+|++|.++|+.-.  . +-.++...+-.|...+    ...+.+..|+..+..+-+..    
T Consensus        31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nC--d-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n----  103 (248)
T KOG4014|consen   31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNC--D-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN----  103 (248)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--c-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC----
Confidence            45677777888766654 57788888887766  2 2234433332222211    12334556666666655521    


Q ss_pred             chhhhHHHHHhhhhhhhhhhhhhchHHHHh--hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013375          267 DQMESTANCLLGISLSAQSKVAITDFDRAT--RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL  344 (444)
Q Consensus       267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~--~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  344 (444)
                         ...+-.++|........      .|.+  +..+|.+.+.++. .  -+|..+-++|...+...  .++       +.
T Consensus       104 ---~~~aC~~~gLl~~~g~~------~r~~dpd~~Ka~~y~traC-d--l~~~~aCf~LS~m~~~g--~~k-------~~  162 (248)
T KOG4014|consen  104 ---IPQACRYLGLLHWNGEK------DRKADPDSEKAERYMTRAC-D--LEDGEACFLLSTMYMGG--KEK-------FK  162 (248)
T ss_pred             ---CHHHHhhhhhhhccCcC------CccCCCCcHHHHHHHHHhc-c--CCCchHHHHHHHHHhcc--chh-------hc
Confidence               13455556655443211      1112  2566777777666 3  34455566665554422  121       12


Q ss_pred             hhcCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013375          345 KLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       345 ~l~P~--~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~  418 (444)
                      .-.|.  .| .-   .+..+.-.++.+.|..+-.+|-++.    ++.+--+....+..    -.+.++|...=+++.+|.
T Consensus       163 t~ap~~g~p-~~---~~~~~~~~kDMdka~qfa~kACel~----~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  163 TNAPGEGKP-LD---RAELGSLSKDMDKALQFAIKACELD----IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             ccCCCCCCC-cc---hhhhhhhhHhHHHHHHHHHHHHhcC----ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            22331  11 11   1222333478889999999998874    33444444444321    235678999889999988


Q ss_pred             Hhhhh
Q 013375          419 QVQTK  423 (444)
Q Consensus       419 ~~~~~  423 (444)
                      .....
T Consensus       235 ~e~~k  239 (248)
T KOG4014|consen  235 EELRK  239 (248)
T ss_pred             HHHHc
Confidence            76554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.23  E-value=1.2  Score=42.12  Aligned_cols=60  Identities=22%  Similarity=0.237  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      ++..++..+...|+++.++..+++.+..+|-+...|..+-..|+..|+...|+..|++.-
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            445566666666666666666666666666666666666666666666666666666654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.97  E-value=4  Score=30.48  Aligned_cols=61  Identities=13%  Similarity=0.100  Sum_probs=35.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          358 MARILSAQKRYEDAETILNAALDQTGKWEQG---ELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       358 la~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      -|.=++.+.+.++|+..++++++..+  +..   .++-.+..++...|++.+.++.--+-+++..+
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~--~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e   75 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKIT--DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE   75 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666777777777776655  332   33334445566677777776666666665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.84  E-value=7.7  Score=40.47  Aligned_cols=87  Identities=17%  Similarity=0.109  Sum_probs=73.2

Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375          293 DRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK  366 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g  366 (444)
                      .+..+|..+++.|...+ .--|.|-      ...-+++.+|....+++.|+++++.|-+.+|.++ -.-...-.+...-|
T Consensus       365 F~~~~Y~~s~~~y~~Sl-~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~-l~q~~~~~~~~~E~  442 (872)
T KOG4814|consen  365 FKMEKYVVSIRFYKLSL-KDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP-LCQLLMLQSFLAED  442 (872)
T ss_pred             HHHHHHHHHHHHHHHHH-HhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHhc
Confidence            56678999999999999 7777664      3456889999999999999999999999999985 77777777777889


Q ss_pred             CHHHHHHHHHHHHhh
Q 013375          367 RYEDAETILNAALDQ  381 (444)
Q Consensus       367 ~~~eA~~~~~~al~~  381 (444)
                      .-++|+.+..+....
T Consensus       443 ~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  443 KSEEALTCLQKIKSS  457 (872)
T ss_pred             chHHHHHHHHHHHhh
Confidence            999999998877644

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.70  E-value=0.83  Score=29.00  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          354 GWLLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       354 ~~~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      ++..||.+-...++|++|+.-|+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344444444444455555544444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=88.19  E-value=71  Score=38.90  Aligned_cols=136  Identities=16%  Similarity=0.072  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375          246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL  325 (444)
Q Consensus       246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~  325 (444)
                      .+..|-+-.++|++-....++     ..--.+|.+|.+-++.+    ...|+++.|..+.-.|. +..  -+.+..-.|.
T Consensus      1643 ~~~~epILa~RRs~l~~~~~~-----~~~~~~ge~wLqsAria----R~aG~~q~A~nall~A~-e~r--~~~i~~E~AK 1710 (2382)
T KOG0890|consen 1643 FRIKEPILAFRRSMLDLRMRS-----NLKSRLGECWLQSARIA----RLAGHLQRAQNALLNAK-ESR--LPEIVLERAK 1710 (2382)
T ss_pred             HHHHhHHHHHHHHHHHHhccc-----cccchhHHHHHHHHHHH----HhcccHHHHHHHHHhhh-hcc--cchHHHHHHH
Confidence            346677777787776442110     11223444444443322    23588999999999988 777  5678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhc-CCC-------C--------hHHHHHHHHHHHHccCHH--HHHHHHHHHHhhcCCCCc
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLE-GGS-------N--------LKGWLLMARILSAQKRYE--DAETILNAALDQTGKWEQ  387 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~-P~~-------~--------~~~~~~la~~l~~~g~~~--eA~~~~~~al~~~P~~~~  387 (444)
                      .+..+|+-..|+..+++.++++ |+.       |        ..+...++......|+++  +-+.+|..+.+..|.|+ 
T Consensus      1711 ~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe- 1789 (2382)
T KOG0890|consen 1711 LLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE- 1789 (2382)
T ss_pred             HHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc-
Confidence            9999999999999999999765 431       1        013334444444555533  45678999999999443 


Q ss_pred             HHHHHHHH
Q 013375          388 GELLRTKA  395 (444)
Q Consensus       388 ~~~~~~la  395 (444)
                       .-+|.+|
T Consensus      1790 -~~hy~l~ 1796 (2382)
T KOG0890|consen 1790 -DKHYHLG 1796 (2382)
T ss_pred             -CceeeHH
Confidence             4455555

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.14  E-value=10  Score=35.14  Aligned_cols=58  Identities=14%  Similarity=0.179  Sum_probs=38.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH-CCCchHHHHHHHHhh
Q 013375          165 DHLSFAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYG-AGEDLVALNLLRTLL  222 (444)
Q Consensus       165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~-~g~~~~A~~~~~~al  222 (444)
                      ..++.+....|+|++.+.++.+++..+|+ +.+-..-|..+|-. .|....++..+....
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e   64 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE   64 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence            45677788889999999999998888765 34445555666533 355555665555544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PRK11619 lytic murein transglycosylase; Provisional

Probab=88.14  E-value=41  Score=36.13  Aligned_cols=115  Identities=12%  Similarity=0.026  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013375          297 RQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~  372 (444)
                      +.+.|...+.+.. ...+-+.+    ++..+|.-....+...+|...+..+.....+.  ..+.-...+-...++.+...
T Consensus       256 d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~--~~~e~r~r~Al~~~dw~~~~  332 (644)
T PRK11619        256 DAENARLMIPSLV-RAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST--SLLERRVRMALGTGDRRGLN  332 (644)
T ss_pred             CHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc--HHHHHHHHHHHHccCHHHHH
Confidence            4577888887765 55544332    33455555555444778888888765443332  33333333444788888877


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      .++...-....  .....+|=+|..+..+|+.++|...|+++..
T Consensus       333 ~~i~~L~~~~~--~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        333 TWLARLPMEAK--EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHhcCHhhc--cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            77776433222  3456667788888889999999999999743

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.83  E-value=8.8  Score=34.34  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=44.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR----DLSILYRLSLEYAEQRKLNAAH  337 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~----~~~a~~~lg~~~~~~g~~~~A~  337 (444)
                      +...+.|+..|.+            .+.++|+..+-+++ ++.+.    |++++..|+.++..+|+++.|-
T Consensus       141 ~elq~aLAtyY~k------------rD~~Kt~~ll~~~L-~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYYTK------------RDPEKTIQLLLRAL-ELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHHHc------------cCHHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            5667778877764            36789999999999 76544    4899999999999999999873

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.66  E-value=4  Score=38.63  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      ...++..++-.+...|+++.++..+++.+.++|-+ -..|..+-.++...|+...|+..|++.-.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~-E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD-EPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            36677888888888899999999999999999988 48888888889999999999988887765

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.53  E-value=5.3  Score=35.18  Aligned_cols=61  Identities=10%  Similarity=-0.033  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          162 SILDHLSFAFSIAGDLSSLATQIEELLPGIIN---RKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .++..+|..|.+.|+.++|+++|.++......   ..+.++++-.+....|++......+.++-
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            35666777777777777777777766655432   23455555666666666666666655555

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.20  E-value=2.5  Score=39.78  Aligned_cols=54  Identities=13%  Similarity=0.058  Sum_probs=35.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHH
Q 013375          167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT  220 (444)
Q Consensus       167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~  220 (444)
                      .+..+...|.+.+|++..+++++++|-+...|..|-.+|...|+--+|++.|++
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            344556666666666666666666666666666666666666666666666555

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.88  E-value=25  Score=35.91  Aligned_cols=29  Identities=14%  Similarity=0.029  Sum_probs=14.8

Q ss_pred             CHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          194 RKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      +++-|-.||...+.+|+++-|+.+|+++=
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            44455555555555555555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.74  E-value=4.1  Score=30.42  Aligned_cols=58  Identities=10%  Similarity=0.054  Sum_probs=41.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH---HHHHccCHHHHHHHHHHHHh
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR---ILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~---~l~~~g~~~eA~~~~~~al~  380 (444)
                      .-|+-++.+.+.++|+...+++++..++.+ ..|..+|.   ++..-|+|.+.+++-.+=++
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677888888999999988888864 77766654   46666888888776554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.32  E-value=6  Score=39.20  Aligned_cols=82  Identities=21%  Similarity=0.126  Sum_probs=53.5

Q ss_pred             HHHhhHHHHHHHHHHHHHhhC--------CCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375          293 DRATRQAKALQALVSAARSTN--------MRDLS----------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG  354 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~--------P~~~~----------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  354 (444)
                      .+.+.|..|..-|+.++ ++-        |..+.          +--.|..||.++++.+-|+....+.+.+||-+. .-
T Consensus       187 yrqk~ya~Aa~rF~taL-elcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f-rn  264 (569)
T PF15015_consen  187 YRQKKYAVAAGRFRTAL-ELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF-RN  264 (569)
T ss_pred             HhhHHHHHHHHHHHHHH-HHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh-hH
Confidence            45667777777777777 752        11111          113566777777777777777777777777764 66


Q ss_pred             HHHHHHHHHHccCHHHHHHHHH
Q 013375          355 WLLMARILSAQKRYEDAETILN  376 (444)
Q Consensus       355 ~~~la~~l~~~g~~~eA~~~~~  376 (444)
                      +..-|.++..+.||.+|-...-
T Consensus       265 HLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  265 HLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777655443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.83  E-value=1.3  Score=26.13  Aligned_cols=30  Identities=20%  Similarity=0.142  Sum_probs=21.1

Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013375          175 GDLSSLATQIEELLPGIINRKERYHILALC  204 (444)
Q Consensus       175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~  204 (444)
                      |+.+.+...|++++...|.+++.|..++..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456677777777777777777777766543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.72  E-value=35  Score=32.04  Aligned_cols=202  Identities=15%  Similarity=0.118  Sum_probs=100.7

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Q 013375          133 VPRNNIEEAILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA  208 (444)
Q Consensus       133 ~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~  208 (444)
                      .....+++|+..+     ..++...|+-.+    ++-.+-.+..++|++++-.+.|.+.+..        ..   .-...
T Consensus        38 l~e~~p~~Al~sF-----~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY--------Ik---SAVTr  101 (440)
T KOG1464|consen   38 LKEDEPKEALSSF-----QKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY--------IK---SAVTR  101 (440)
T ss_pred             ccccCHHHHHHHH-----HHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------HH---HHHhc
Confidence            3556788998765     456666565433    4556667888889998888888776632        11   11111


Q ss_pred             CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhhhhhhhhhh
Q 013375          209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKV  287 (444)
Q Consensus       209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~  287 (444)
                      +--++.+...-.-+  .                  ...+.+---.+|+..++.+.+ ..+.++...-.-||..|+..+.+
T Consensus       102 NySEKsIN~IlDyi--S------------------tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~  161 (440)
T KOG1464|consen  102 NYSEKSINSILDYI--S------------------TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEY  161 (440)
T ss_pred             cccHHHHHHHHHHH--h------------------hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHH
Confidence            22222332222222  1                  111111122344433332211 11111122223467676665432


Q ss_pred             hhchHHHHhhHHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          288 AITDFDRATRQAKALQALVSAARSTNMRDLS---------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                              ++..+-++.+.+.. +.+....+         ++-.--..|-.+++-.+-...|++++.+..--| ..+ -+
T Consensus       162 --------~kl~KIlkqLh~SC-q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPl-Im  230 (440)
T KOG1464|consen  162 --------TKLQKILKQLHQSC-QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPL-IM  230 (440)
T ss_pred             --------HHHHHHHHHHHHHh-ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chH-HH
Confidence                    23344444444444 33322111         222223455667777777788888888775432 111 12


Q ss_pred             -------HHHHHHccCHHHHHHHHHHHHhh
Q 013375          359 -------ARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       359 -------a~~l~~~g~~~eA~~~~~~al~~  381 (444)
                             |..+.+-|++++|-.-|=.|.+.
T Consensus       231 GvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  231 GVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence                   33456668888888777666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=84.32  E-value=18  Score=38.00  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=25.9

Q ss_pred             HHHHHHHH-----HHHHHhhhhhccCccchhhhccCCCCCCC
Q 013375          407 AVETYTHL-----LAALQVQTKTFSSDKRFYKVCLSPSCPFL  443 (444)
Q Consensus       407 A~~~~~~a-----l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (444)
                      +...|+.+     +..+|+=-..+-++-|-++|--...|||-
T Consensus      1031 r~~y~rNilPd~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFC 1072 (1081)
T KOG1538|consen 1031 RWQYFRNLLPDASITMCPSCFQMFHSEDFELLVLQKGHCPFC 1072 (1081)
T ss_pred             chHHHHhhCCcchhhhCchHHhhhccchhhHHHHhcCCCCcc
Confidence            44555554     34566555577788888899889999983

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=83.84  E-value=6.4  Score=39.05  Aligned_cols=83  Identities=7%  Similarity=-0.141  Sum_probs=51.2

Q ss_pred             cCCHHHHHHHHHHHHhhcC-CCC-------hH--HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          330 QRKLNAAHYYAKMLLKLEG-GSN-------LK--GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       330 ~g~~~~A~~~~~~al~l~P-~~~-------~~--~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      .|++..|++.+.+.-.+.- ..+       +.  .--.+..+|.+.++.+-|+....+.|.++|  .++.-+...|.++.
T Consensus       196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP--~~frnHLrqAavfR  273 (569)
T PF15015_consen  196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP--SYFRNHLRQAAVFR  273 (569)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc--chhhHHHHHHHHHH
Confidence            3566666666666654432 211       01  112466777777777777777777777777  66666777777777


Q ss_pred             HhCCHHHHHHHHHHH
Q 013375          400 VQGQLKGAVETYTHL  414 (444)
Q Consensus       400 ~~g~~~~A~~~~~~a  414 (444)
                      .+.+|.+|-...--+
T Consensus       274 ~LeRy~eAarSamia  288 (569)
T PF15015_consen  274 RLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777766554444

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=83.45  E-value=5.2  Score=45.06  Aligned_cols=119  Identities=14%  Similarity=-0.037  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-------CCCChHHHHHHHHHHHHccCHHHH
Q 013375          299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-------GGSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                      .+++..+....+.+.|+.+..+..|+.++.+.|+.++|+..-.++.-+.       +-+....+.+++...+..+....|
T Consensus       955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a 1034 (1236)
T KOG1839|consen  955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGA 1034 (1236)
T ss_pred             hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccch
Confidence            3455588866657899999999999999999999999999988776543       222246788999999999999999


Q ss_pred             HHHHHHHHhh--------cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          372 ETILNAALDQ--------TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       372 ~~~~~~al~~--------~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                      +..+.++..+        .|  .-.....+++.++...++++.|+...+.|+++..
T Consensus      1035 l~~~~ra~~l~~Ls~ge~hP--~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHP--PTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred             hhhHHHHHHhhccccCCCCC--chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            9999998864        35  4556667889999999999999999999999544

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.16  E-value=16  Score=37.41  Aligned_cols=129  Identities=12%  Similarity=-0.006  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHHHHHH
Q 013375          299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      ....+.+.... ..-|+++...++-+..+...|+.+.|+..++..+.  +...   .-++.-+|++..-+.+|..|-..+
T Consensus       250 ~~~~~~Ll~~~-~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~  326 (546)
T KOG3783|consen  250 EECEKALKKYR-KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSF  326 (546)
T ss_pred             HHHHHHhHHHH-HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            45566666677 88899999999999999999999999999999988  3321   245567889999999999999999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHH--------HHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQ--------LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF  431 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~--------~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  431 (444)
                      +...+++. |...-.-|..|-++        ...|+.+.|-...+..-++-..-.++.-.++|.
T Consensus       327 ~~L~desd-WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~  389 (546)
T KOG3783|consen  327 DLLRDESD-WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI  389 (546)
T ss_pred             HHHHhhhh-hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH
Confidence            99988764 44444334443443        334566666666666666555444555555554

>PRK12798 chemotaxis protein; Reviewed

Probab=83.09  E-value=53  Score=32.84  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLE  347 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~  347 (444)
                      +|..++..-...|+.+-|.-.-++|+.+.
T Consensus       259 lYL~iAR~Ali~Gk~~lA~~As~~A~~L~  287 (421)
T PRK12798        259 LYLRIARAALIDGKTELARFASERALKLA  287 (421)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence            33444555555566666666666665554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.76  E-value=4.4  Score=38.25  Aligned_cols=57  Identities=18%  Similarity=-0.007  Sum_probs=44.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      ...+..|.+.|.+.+|+.+.++++.++|-+ .+.|..+-.++...|+--.|+..|++-
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            445666778888888888888888888887 488888888888888877777776654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=82.61  E-value=70  Score=33.86  Aligned_cols=24  Identities=21%  Similarity=0.079  Sum_probs=18.0

Q ss_pred             HHHHHHHHHCCCchHHHHHHHHhh
Q 013375          199 HILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       199 ~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      ..+|.++.-.|++.||-+.|.+.=
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G  659 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSG  659 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcC
Confidence            346777778888888888887754

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=81.76  E-value=6.9  Score=39.08  Aligned_cols=57  Identities=14%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhc--------CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          166 HLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       166 ~lg~~l~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      -|.+++.-.|||..|++.++-.=        +..+-+...+|..|.+|+-++||.+|++.|..+|
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34468888999999999877541        2223456789999999999999999999999999

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=80.93  E-value=56  Score=32.52  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=36.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcC----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          324 SLEYAEQRKLNAAHYYAKMLLKLEG----GSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       324 g~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      =..|...+.++.|.+...+..--..    +. +...+.+|.+..-+++|..|..++-+|+...|
T Consensus       216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~-ARY~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEW-ARYLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             HHHHhhhHHHHHHHHHhhcccCccccccHHH-HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            3445556667777777666642111    11 23445667777777777777777777777777

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.62  E-value=2.5  Score=27.80  Aligned_cols=25  Identities=28%  Similarity=0.211  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          198 YHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       198 ~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .+.||.+|..+|+.+.|...+++++
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH
Confidence            3678999999999999999999999

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=80.26  E-value=59  Score=31.49  Aligned_cols=52  Identities=10%  Similarity=0.118  Sum_probs=32.0

Q ss_pred             HHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013375          204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE  260 (444)
Q Consensus       204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~  260 (444)
                      .-.+..+.++=++.-..++  .+||+...++..++.-   ..--..+|...++++++
T Consensus       193 ~AWRERnp~~RI~~A~~AL--eIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALk  244 (556)
T KOG3807|consen  193 KAWRERNPPARIKAAYQAL--EINNECATAYVLLAEE---EATTIVDAERLFKQALK  244 (556)
T ss_pred             HHHHhcCcHHHHHHHHHHH--hcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHH
Confidence            3344455666677777777  7788777777655432   22334567777777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	444
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 5e-09
 Identities = 74/477 (15%), Positives = 142/477 (29%), Gaps = 149/477 (31%)

Query: 60  ETLNRAVELLPELWKLADAPR-ETIMSYRRALL---P-----------C--WNLDAET-- 100
           + L    ++  +     +  R +  +  R+ALL   P                +  +   
Sbjct: 117 DRLYNDNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 101 TAKLQK--EFAIFLLYCGGETCP---------------PNLRSQMGSSFVPRNNIEEAIL 143
           + K+Q   +F IF L       P               PN  S+   S   +  I     
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 144 LLMILLRKVALKR-------IEWDPSILDHLSFAFSIAGDLSS--LATQIEELLPGIINR 194
            L  LL+    +        +  +    +    AF    +LS   L T   + +   ++ 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNV-QNAKAWN----AF----NLSCKILLTTRFKQVTDFLSA 283

Query: 195 KERYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA-------LLIASKICGEYPD 246
               HI L         D    +LL   L     P+ LP          ++  I  E   
Sbjct: 284 ATTTHISLDHHSMTLTPDE-VKSLLLKYL--DCRPQDLPREVLTTNPRRLS--IIAES-- 336

Query: 247 LAEEGATFASRALECLGD-----GCDQMESTANCLLGISLSAQS---------KVAITDF 292
           + +  AT+         D      CD++ +     +  SL+            ++++  F
Sbjct: 337 IRDGLATW---------DNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSV--F 381

Query: 293 DRATR-QAKALQAL-VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHY----YAKMLLKL 346
             +       L  +     +S  M  ++ L++ SL   E++   +       Y ++ +KL
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKL 439

Query: 347 EGGSNLKGWLLMARIL---SAQKRYEDAETILNAA-----------LDQTGKWEQGELLR 392
           E    L        I+   +  K ++  + I               L      E+  L R
Sbjct: 440 ENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 393 T--------KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCLSPSCP 441
                    + K++        A  +  + L              +FYK  +  + P
Sbjct: 495 MVFLDFRFLEQKIRHD-STAWNASGSILNTL-----------QQLKFYKPYICDNDP 539

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 43/301 (14%), Positives = 81/301 (26%), Gaps = 25/301 (8%)

Query: 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLS------SLATQIEELL 188
             N +EA  L  + L ++              L       G+L+          Q+    
Sbjct: 27  DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86

Query: 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLL------SGSEDPKCLPALLIASKICG 242
                        +   +  G    A                 + P     + I +++  
Sbjct: 87  DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146

Query: 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302
            +  L +E    A   +E L     Q +     +L     A+      D D A  Q   L
Sbjct: 147 AWARL-DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG-----DLDNARSQLNRL 200

Query: 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMA 359
           + L+   +  +    +      + +       AA  + +   K E  +N      W  +A
Sbjct: 201 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260

Query: 360 RILSAQKRYEDAETILNAALDQT----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415
           R       +E AE +L    +         +    L    ++    G+   A       L
Sbjct: 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320

Query: 416 A 416
            
Sbjct: 321 K 321

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 43/217 (19%), Positives = 65/217 (29%), Gaps = 35/217 (16%)

Query: 198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD-LAEEGATFAS 256
              LA  Y   G+   A  LL      +    C            ++   L   G T   
Sbjct: 120 AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179

Query: 257 RALECLG------DGCDQMESTANCLLGISLSAQSKV--AITDFDRATRQ----AKALQA 304
           R  E         DG  ++E++   L G   +  S    A   +  A        +A   
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239

Query: 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---------- 354
           LVS    T   +  ++  L L Y+   K +AA   +  +LKL   S+             
Sbjct: 240 LVSNHLLTADEEWDLV--LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297

Query: 355 ----------WLLMARILSAQKRYEDAETILNAALDQ 381
                      L  A  L  + R+ D   I    L+ 
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 24/236 (10%)

Query: 184 IEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243
           ++E+ P      +   + A            +  L   +S S D      LL+A+ I   
Sbjct: 54  LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113

Query: 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303
             +           AL  L  G          L  ++++ Q  + +   D A ++ K +Q
Sbjct: 114 DQNPDA--------ALRTLHQGDS--------LECMAMTVQILLKLDRLDLARKELKKMQ 157

Query: 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363
                A  T +    +            KL  A+Y  + +        L      A    
Sbjct: 158 DQDEDATLTQLATAWVSLAA-----GGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHM 211

Query: 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419
           AQ R+E AE +L  ALD+       E L     +    G+       Y   L    
Sbjct: 212 AQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.98
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.95
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.93
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.91
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.89
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.86
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.84
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.82
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.82
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.81
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.81
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.81
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.78
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.76
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.75
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.73
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.72
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.68
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.66
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.63
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.62
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.61
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.6
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.59
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.57
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.57
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.55
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.53
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.52
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.5
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.5
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.5
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.48
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.48
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.45
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.45
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.42
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.4
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.4
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.39
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.32
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.31
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.08
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.01
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.0
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.96
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.91
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.91
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.9
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.8
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.52
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.52
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.39
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.37
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.37
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.36
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.97
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.85
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.75
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.73
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.7
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.36
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.25
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.22
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.15
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.09
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.47
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.42
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.15
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.87
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.46
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.32
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.11
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.64
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.42
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.06
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.03
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.98
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.58
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.89
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.57
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.65
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.25
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.09
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	85.23
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.94
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.39
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.25
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	81.65
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.51

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.4e-38  Score=315.29  Aligned_cols=340  Identities=17%  Similarity=0.116  Sum_probs=282.5

Q ss_pred             HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375           12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL   91 (444)
Q Consensus        12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~   91 (444)
                      ++..+|.++...|++++|+..++++++.        .|..           ..++..+|.++...|++++|+..|+++++
T Consensus        35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   95 (388)
T 1w3b_A           35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL-----------AEAYSNLGNVYKERGQLQEAIEHYRHALR   95 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc-----------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4555666666666666666666666654        2221           24666777777777777777777777777


Q ss_pred             cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375           92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF  171 (444)
Q Consensus        92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l  171 (444)
                      .    +|.+... ...++..                    +...|++++|+..+     +.++..+|++..++..+|.++
T Consensus        96 ~----~p~~~~~-~~~l~~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A           96 L----KPDFIDG-YINLAAA--------------------LVAAGDMEGAVQAY-----VSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             H----CTTCHHH-HHHHHHH--------------------HHHHSCSSHHHHHH-----HHHHHHCTTCTHHHHHHHHHH
T ss_pred             c----CcchHHH-HHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHH
Confidence            7    4443221 2233333                    33456778888875     445678899999999999999


Q ss_pred             HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013375          172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG  251 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA  251 (444)
                      ...|++++|++.|+++++.+|+++.+|+++|.++...|++++|+..|++++  .++|+++.++..+|.++ ...|++++|
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~-~~~~~~~~A  222 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVL-KEARIFDRA  222 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCTTHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCcHHHHHHHHHHH-HHcCCHHHH
Confidence            999999999999999999999999999999999999999999999999999  89999999988887765 457899999


Q ss_pred             HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013375          252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR  331 (444)
Q Consensus       252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g  331 (444)
                      +..|+++++..|.+     ..++..+|.++...           |++++|++.|++++ +++|+++.+++++|.++...|
T Consensus       223 ~~~~~~al~~~p~~-----~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g  285 (388)
T 1w3b_A          223 VAAYLRALSLSPNH-----AVVHGNLACVYYEQ-----------GLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             HHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhCcCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC
Confidence            99999999965543     46788889888764           67899999999999 999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375          332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      ++++|+..|+++++++|++ ..+|..+|.++..+|++++|+..++++++..|  ++..+++++|.++..+|++++|+..|
T Consensus       286 ~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          286 SVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999 59999999999999999999999999999999  89999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 013375          412 THLLAALQVQTK  423 (444)
Q Consensus       412 ~~al~l~~~~~~  423 (444)
                      ++++++.|+..+
T Consensus       363 ~~a~~~~p~~~~  374 (388)
T 1w3b_A          363 KEAIRISPTFAD  374 (388)
T ss_dssp             HHHHTTCTTCHH
T ss_pred             HHHHhhCCCCHH
Confidence            999998887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=4.6e-38  Score=311.61  Aligned_cols=336  Identities=17%  Similarity=0.077  Sum_probs=300.6

Q ss_pred             HHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCC
Q 013375           15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW   94 (444)
Q Consensus        15 ~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~   94 (444)
                      ..|..+.+.|++++|++.|.++++.        .|.+           ..++..++.++...|++++|+..++++++.  
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--   62 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--   62 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence            4688899999999999999999887        3443           247778899999999999999999999998  


Q ss_pred             CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 013375           95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA  174 (444)
Q Consensus        95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~  174 (444)
                        +|.+.. ....++..                    +...|++++|+..+     +.++...|+++.+|..+|.++...
T Consensus        63 --~p~~~~-~~~~lg~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~~~~~  114 (388)
T 1w3b_A           63 --NPLLAE-AYSNLGNV--------------------YKERGQLQEAIEHY-----RHALRLKPDFIDGYINLAAALVAA  114 (388)
T ss_dssp             --CTTCHH-HHHHHHHH--------------------HHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             --CCCchH-HHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHcCcchHHHHHHHHHHHHHc
Confidence              554432 22344433                    34467899999886     556778899999999999999999


Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013375          175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF  254 (444)
Q Consensus       175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~  254 (444)
                      |++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++  ..+|+++.++..+|.++ ...|++++|+..
T Consensus       115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~  191 (388)
T 1w3b_A          115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI--ETQPNFAVAWSNLGCVF-NAQGEIWLAIHH  191 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999  89999999998887765 567999999999


Q ss_pred             HHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013375          255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN  334 (444)
Q Consensus       255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~  334 (444)
                      |+++++..|..     ..++..+|.++...           +++++|+..|++++ .++|+++.+++++|.++...|+++
T Consensus       192 ~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~  254 (388)
T 1w3b_A          192 FEKAVTLDPNF-----LDAYINLGNVLKEA-----------RIFDRAVAAYLRAL-SLSPNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHHHHHCTTC-----HHHHHHHHHHHHTT-----------TCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCcCCHHHHHHHHHHHHHcCCHH
Confidence            99999965543     57899999998765           56899999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       335 ~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      +|+..|+++++++|++ ..+|..+|.++...|++++|+..|+++++..|  ++..++..+|.++...|++++|+..|+++
T Consensus       255 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  331 (388)
T 1w3b_A          255 LAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             HHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999 49999999999999999999999999999999  89999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 013375          415 LAALQVQT  422 (444)
Q Consensus       415 l~l~~~~~  422 (444)
                      +++.|+..
T Consensus       332 l~~~p~~~  339 (388)
T 1w3b_A          332 LEVFPEFA  339 (388)
T ss_dssp             TTSCTTCH
T ss_pred             HhcCCCcH
Confidence            99877654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=294.63  Aligned_cols=268  Identities=11%  Similarity=0.043  Sum_probs=239.5

Q ss_pred             CCCcHHHHHHHHHHHHH--HHHHhhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013375          134 PRNNIEEAILLLMILLR--KVALKRI-------EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC  204 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~--~~~l~~~-------p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  204 (444)
                      ..|++++|+..+...+.  +..+...       |.++.++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.+
T Consensus       201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~  279 (514)
T 2gw1_A          201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI  279 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHH
Confidence            47899999988633211  0001123       445679999999999999999999999999999999 9999999999


Q ss_pred             HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                      +...|++++|+..|++++  ..+|+++.++..++.++.. .|++++|+..++++++..|.+     ..++..+|.++...
T Consensus       280 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~  351 (514)
T 2gw1_A          280 MADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPEN-----IFPYIQLACLAYRE  351 (514)
T ss_dssp             HHTSSCCTTGGGHHHHHH--TTCTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSC-----SHHHHHHHHHTTTT
T ss_pred             HHHCCCHHHHHHHHHHHh--hcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHHc
Confidence            999999999999999999  8999999999888887654 689999999999999965543     46888999998765


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH------HHHHH
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK------GWLLM  358 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~~l  358 (444)
                                 |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|+++ .      +|..+
T Consensus       352 -----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l  418 (514)
T 2gw1_A          352 -----------NKFDDCETLFSEAK-RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-GIYVGIAPLVGK  418 (514)
T ss_dssp             -----------TCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-SCSSCSHHHHHH
T ss_pred             -----------CCHHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHH
Confidence                       57899999999999 99999999999999999999999999999999999999984 5      99999


Q ss_pred             HHHHHH---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          359 ARILSA---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       359 a~~l~~---~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      |.++..   .|++++|+..++++++..|  ++..+++.+|.++...|++++|+..|++++++.|+..+..
T Consensus       419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  486 (514)
T 2gw1_A          419 ATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL  486 (514)
T ss_dssp             HHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             HHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence            999999   9999999999999999999  8999999999999999999999999999999999876643

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.3e-34  Score=297.85  Aligned_cols=371  Identities=11%  Similarity=0.030  Sum_probs=296.1

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013375            3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET   82 (444)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA   82 (444)
                      ...-.-.+++|+.+|.++.+.|++++|+..|+++++.        .|.+           ..++..+|.+|...|++++|
T Consensus        18 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~-----------~~~~~~la~~~~~~g~~~~A   78 (537)
T 3fp2_A           18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNE-----------PVFYSNISACYISTGDLEKV   78 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCC-----------cHHHHHHHHHHHHcCCHHHH
Confidence            3344457889999999999999999999999999987        3332           25788889999999999999


Q ss_pred             HHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCC-----------CCCccc--------------------------
Q 013375           83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGET-----------CPPNLR--------------------------  125 (444)
Q Consensus        83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~-----------~~~~~~--------------------------  125 (444)
                      +..|+++++.    +|.+... ...++..+...+...           .|....                          
T Consensus        79 ~~~~~~al~~----~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~  153 (537)
T 3fp2_A           79 IEFTTKALEI----KPDHSKA-LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD  153 (537)
T ss_dssp             HHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHhc----CCchHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998    4544322 122222222211100           000000                          


Q ss_pred             --------------------------------------------cccCccccC--------CCcHHHHHHHHHHHHHHHH
Q 013375          126 --------------------------------------------SQMGSSFVP--------RNNIEEAILLLMILLRKVA  153 (444)
Q Consensus       126 --------------------------------------------~~~~~~~~~--------~~~~~eAi~~l~~~~~~~~  153 (444)
                                                                  ..+..++..        .+++++|+..+     +.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~-----~~~  228 (537)
T 3fp2_A          154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY-----HSL  228 (537)
T ss_dssp             -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH-----HHH
T ss_pred             ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHH
Confidence                                                        000000000        12556666654     567


Q ss_pred             HhhCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC
Q 013375          154 LKRIEWDPS-------ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE  226 (444)
Q Consensus       154 l~~~p~~~~-------~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~  226 (444)
                      +...|+++.       ++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.++...|++++|+..|++++  ..
T Consensus       229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~  305 (537)
T 3fp2_A          229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV--DL  305 (537)
T ss_dssp             HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH--HH
T ss_pred             HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh--cc
Confidence            788899866       5778888999999999999999999999999 9999999999999999999999999999  89


Q ss_pred             CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375          227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV  306 (444)
Q Consensus       227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~  306 (444)
                      +|+++.++..+|.++. ..|++++|+..++++++..|.+     ..++..+|.++...           |++++|+..|+
T Consensus       306 ~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~  368 (537)
T 3fp2_A          306 NPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPEN-----VYPYIQLACLLYKQ-----------GKFTESEAFFN  368 (537)
T ss_dssp             CTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-----SHHHHHHHHHHHHT-----------TCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHH
Confidence            9999999998887765 4789999999999999976544     46889999998765           67999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHc----------cCHHHH
Q 013375          307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ----------KRYEDA  371 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~----------g~~~eA  371 (444)
                      +++ +.+|+++.+++.+|.++...|++++|+..|+++++++|++.     ...+..+|.++..+          |++++|
T Consensus       369 ~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A  447 (537)
T 3fp2_A          369 ETK-LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA  447 (537)
T ss_dssp             HHH-HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred             HHH-HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence            999 99999999999999999999999999999999999998863     12356678899999          999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      +.+++++++.+|  ++..+++.+|.++..+|++++|+..|++++++.|+..+..
T Consensus       448 ~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  499 (537)
T 3fp2_A          448 IKLLTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL  499 (537)
T ss_dssp             HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred             HHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            999999999999  8999999999999999999999999999999998776643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.3e-33  Score=284.24  Aligned_cols=343  Identities=15%  Similarity=0.097  Sum_probs=292.1

Q ss_pred             HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375            9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR   88 (444)
Q Consensus         9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~   88 (444)
                      ..+.++.+|.++.+.|++++|+..|.++++.        .|..           ..++..+|.++...|++++|+..|++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3678999999999999999999999999976        2332           35788899999999999999999999


Q ss_pred             HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCH---HHHH
Q 013375           89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDP---SILD  165 (444)
Q Consensus        89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~---~~~~  165 (444)
                      +++.    +|.+.. ....++.                    ++...|++++|+..+     +.++...|+++   .++.
T Consensus        86 al~~----~p~~~~-~~~~l~~--------------------~~~~~g~~~~A~~~~-----~~~~~~~~~~~~~~~~~~  135 (450)
T 2y4t_A           86 VIQL----KMDFTA-ARLQRGH--------------------LLLKQGKLDEAEDDF-----KKVLKSNPSENEEKEAQS  135 (450)
T ss_dssp             HHHH----CTTCHH-HHHHHHH--------------------HHHHTTCHHHHHHHH-----HHHHTSCCCHHHHHHHHH
T ss_pred             HHhc----CCCcHH-HHHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHhcCCCChhhHHHHH
Confidence            9998    554432 2233443                    344578899999886     55678889988   7766


Q ss_pred             HH------------HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013375          166 HL------------SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA  233 (444)
Q Consensus       166 ~l------------g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a  233 (444)
                      .+            |.++...|++++|+..|++++..+|+++.+++.+|.+|...|++++|+..|++++  ..+|+++.+
T Consensus       136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~  213 (450)
T 2y4t_A          136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--KLKNDNTEA  213 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH--HHHCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHH
Confidence            55            6669999999999999999999999999999999999999999999999999999  899999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh------------hhhhhhhhhhhhchHHHHhhHHHH
Q 013375          234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL------------GISLSAQSKVAITDFDRATRQAKA  301 (444)
Q Consensus       234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l------------g~~~~~~~~~~~~~~~~~~~~~eA  301 (444)
                      +..++.++.. .|++++|+..++++++..|.+.     .++..+            |.++..           .|++++|
T Consensus       214 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~A  276 (450)
T 2y4t_A          214 FYKISTLYYQ-LGDHELSLSEVRECLKLDQDHK-----RCFAHYKQVKKLNKLIESAEELIR-----------DGRYTDA  276 (450)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHHHHHHHH-----------HTCHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCChH-----HHHHHHHHHHHHHHHHHHHHHHHH-----------cCCHHHH
Confidence            9988887654 7899999999999999765542     233333            555543           4789999


Q ss_pred             HHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375          302 LQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA  377 (444)
Q Consensus       302 ~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~  377 (444)
                      +..|++++ .++|+++.    ++..+|.++.+.|++++|+..++++++++|++ ..+|..+|.++...|++++|+.++++
T Consensus       277 ~~~~~~~l-~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~  354 (450)
T 2y4t_A          277 TSKYESVM-KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYET  354 (450)
T ss_dssp             HHHHHHHH-HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999 99999965    78999999999999999999999999999999 59999999999999999999999999


Q ss_pred             HHhhcCCCCcHHHHHHHHHHH------------HHhC-----CHHHHHHHHHH-HHHHHHhhhh
Q 013375          378 ALDQTGKWEQGELLRTKAKVQ------------LVQG-----QLKGAVETYTH-LLAALQVQTK  423 (444)
Q Consensus       378 al~~~P~~~~~~~~~~la~~~------------~~~g-----~~~~A~~~~~~-al~l~~~~~~  423 (444)
                      +++++|  ++..++..++.+.            ..+|     ..+++...|++ ++..+|+...
T Consensus       355 al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~  416 (450)
T 2y4t_A          355 AQEHNE--NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ  416 (450)
T ss_dssp             HHTTSS--SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred             HHHhCc--chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence            999999  8999999999553            3444     66788999997 7888887653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=7.3e-33  Score=268.68  Aligned_cols=332  Identities=15%  Similarity=0.091  Sum_probs=241.4

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      .+.++.+|.++...|++++|+..|.++++.        .|..           ..++..+|.++...|++++|+..|+++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~   63 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKV   63 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------Cccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            578889999999999999999999999876        2332           247788889999999999999999999


Q ss_pred             hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCC---CCHHHHHH
Q 013375           90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIE---WDPSILDH  166 (444)
Q Consensus        90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p---~~~~~~~~  166 (444)
                      ++.    +|.+.. ....++..                    +...|++++|+..+     +.++...|   +++.++..
T Consensus        64 ~~~----~~~~~~-~~~~l~~~--------------------~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~  113 (359)
T 3ieg_A           64 IAL----KMDFTA-ARLQRGHL--------------------LLKQGKLDEAEDDF-----KKVLKSNPSEQEEKEAESQ  113 (359)
T ss_dssp             HHH----CTTCHH-HHHHHHHH--------------------HHHHTCHHHHHHHH-----HHHHTSCCCHHHHHHHHHH
T ss_pred             HHh----CCCcch-HHHHHHHH--------------------HHHcCChHHHHHHH-----HHHHhcCCcccChHHHHHH
Confidence            988    444322 12333333                    33356778887765     44567778   77777777


Q ss_pred             H------------HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          167 L------------SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       167 l------------g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      +            |.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++  ..+|+++.++
T Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~  191 (359)
T 3ieg_A          114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--KLKSDNTEAF  191 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHH
Confidence            6            5778888888888888888888888888888888888888888888888888888  7888888887


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh-hchHHHHhhHHHHHHHHHHHHHhhC
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA-ITDFDRATRQAKALQALVSAARSTN  313 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~-~~~~~~~~~~~eA~~~~~~al~~~~  313 (444)
                      ..+|.++.. .|++++|+..++++++..|.+.     .++..++.+........ .....+.|++++|+..|++++ ..+
T Consensus       192 ~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~  264 (359)
T 3ieg_A          192 YKISTLYYQ-LGDHELSLSEVRECLKLDQDHK-----RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-KTE  264 (359)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHhhCccch-----HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC
Confidence            777766544 5778888888888888654432     23333322211110000 011245677888888888888 888


Q ss_pred             CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          314 MRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       314 P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      |+++.    ++..+|.++...|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+|+++++.+|  ++..
T Consensus       265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~  341 (359)
T 3ieg_A          265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQ  341 (359)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHH
T ss_pred             CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChH
Confidence            88774    35567888888888888888888888888887 48888888888888888888888888888888  7777


Q ss_pred             HHHHHHHHHHHhC
Q 013375          390 LLRTKAKVQLVQG  402 (444)
Q Consensus       390 ~~~~la~~~~~~g  402 (444)
                      ++..++.+...++
T Consensus       342 ~~~~l~~~~~~~~  354 (359)
T 3ieg_A          342 IREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777665543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=285.94  Aligned_cols=372  Identities=15%  Similarity=0.057  Sum_probs=275.9

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCC-CCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEG-FPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR   88 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~   88 (444)
                      +..++.+|.++..+|++++|++.|++++++..+..+.. .|.           ...++..+|.+|...|++++|+..|++
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-----------~~~~~~nla~~y~~~g~~~~A~~~~~k  119 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-----------SLVTWGNYAWVYYHMGRLSDVQIYVDK  119 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-----------THHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-----------HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            34577899999999999999999999998865533221 222           234678899999999999999999999


Q ss_pred             HhCcCC-C---CChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013375           89 ALLPCW-N---LDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL  164 (444)
Q Consensus        89 aL~~~~-~---~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~  164 (444)
                      ++++.+ .   ..+.. ..+....+..++.                  ...+++++|+..+     +.++..+|++++++
T Consensus       120 a~~i~~~~~~~~~~~~-~~~~~~~g~~~~~------------------~~~~~y~~A~~~~-----~kal~~~p~~~~~~  175 (472)
T 4g1t_A          120 VKHVCEKFSSPYRIES-PELDCEEGWTRLK------------------CGGNQNERAKVCF-----EKALEKKPKNPEFT  175 (472)
T ss_dssp             HHHHHHHSCCSSCCCC-HHHHHHHHHHHHH------------------HCTTHHHHHHHHH-----HHHHHHSTTCHHHH
T ss_pred             HHHHhHhcccccchhh-HHHHHHHHHHHHH------------------HccccHHHHHHHH-----HHHHHhCCCCHHHH
Confidence            998711 0   11111 1112223332222                  1245799999986     55678899999999


Q ss_pred             HHHHHHHH---hcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC----CCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          165 DHLSFAFS---IAGDLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       165 ~~lg~~l~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      ..+|.++.   ..|+.++|++.|+++++++|+++.++..+|..+...    |++++|+..|++++  ..+|+++.++..+
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al--~~~~~~~~~~~~l  253 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL--EKAPGVTDVLRSA  253 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH--HHCSSCHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HhCccHHHHHHHH
Confidence            99998855   467889999999999999999999999999877664    67889999999999  8999999999988


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc--------hHHHHhhHHHHHHHHHHHH
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------DFDRATRQAKALQALVSAA  309 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------~~~~~~~~~eA~~~~~~al  309 (444)
                      |.++ ...|++++|+..++++++..|.+     ..+++.+|.+|..++.....        .....+.+++|+..|++++
T Consensus       254 g~~~-~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  327 (472)
T 4g1t_A          254 AKFY-RRKDEPDKAIELLKKALEYIPNN-----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD  327 (472)
T ss_dssp             HHHH-HHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHcCchHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            8775 45799999999999999976554     57889999998765433211        1123456789999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCC--
Q 013375          310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARI-LSAQKRYEDAETILNAALDQTGK--  384 (444)
Q Consensus       310 ~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~-l~~~g~~~eA~~~~~~al~~~P~--  384 (444)
                       .++|+++.+++++|.++...|++++|+..|+++++++|++..  ..+..+|.+ +..+|++++|+..|++++++.|+  
T Consensus       328 -~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~  406 (472)
T 4g1t_A          328 -EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR  406 (472)
T ss_dssp             -HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred             -hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence             999999999999999999999999999999999999988521  235666654 45779999999999999876541  


Q ss_pred             --------------------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          385 --------------------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       385 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                                          ++++.+|.++|.++..+|++++|+++|+++|++.+..++..
T Consensus       407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~  467 (472)
T 4g1t_A          407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS  467 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence                                05678899999999999999999999999999988776643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-32  Score=288.01  Aligned_cols=355  Identities=14%  Similarity=0.056  Sum_probs=299.2

Q ss_pred             HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHH---------------------------HH
Q 013375            9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQ---------------------------ET   61 (444)
Q Consensus         9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~---------------------------~~   61 (444)
                      ....|+.+|.+|.+.|++++|++.|+++++..        |.....+..+.                           ..
T Consensus       199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  270 (597)
T 2xpi_A          199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--------AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF  270 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence            46789999999999999999999999999763        22211000000                           00


Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375           62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA  141 (444)
Q Consensus        62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA  141 (444)
                      ....+..++..|.+.|++++|+..|+++++.+  .++.    ....++.                    .+...|++++|
T Consensus       271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~l~~--------------------~~~~~g~~~~A  324 (597)
T 2xpi_A          271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSD----LLLCKAD--------------------TLFVRSRFIDV  324 (597)
T ss_dssp             HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG--GCHH----HHHHHHH--------------------HHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC--chHH----HHHHHHH--------------------HHHHhcCHHHH
Confidence            11112223556778899999999999999862  1221    1233333                    34457889999


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHh
Q 013375          142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTL  221 (444)
Q Consensus       142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~a  221 (444)
                      +..+     +.++...|++..++..++.++...|++++|+..|++++..+|+++.+|+.+|.+|...|++++|+..|+++
T Consensus       325 ~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  399 (597)
T 2xpi_A          325 LAIT-----TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS  399 (597)
T ss_dssp             HHHH-----HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHH-----HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9886     45667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHH
Q 013375          222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA  301 (444)
Q Consensus       222 l~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA  301 (444)
                      +  ..+|+++.++..++.++. ..|++++|+..|+++++..|++     ..++..+|.+|...           |++++|
T Consensus       400 ~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-----------g~~~~A  460 (597)
T 2xpi_A          400 S--TMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQHMQL-----------GNILLA  460 (597)
T ss_dssp             H--HHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTC-----SHHHHHHHHHHHHH-----------TCHHHH
T ss_pred             H--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHc-----------CCHHHH
Confidence            9  899999999988887764 4789999999999999965543     46888899988764           679999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL------EGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       302 ~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      ++.|++++ +.+|+++.+++.+|.++.+.|++++|++.|++++++      +|+....+|..+|.++...|++++|+..+
T Consensus       461 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~  539 (597)
T 2xpi_A          461 NEYLQSSY-ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL  539 (597)
T ss_dssp             HHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHH-HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999 999999999999999999999999999999999999      55531379999999999999999999999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      +++++..|  ++..+|..+|.++...|++++|+..|++++++.|++...
T Consensus       540 ~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          540 NQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA  586 (597)
T ss_dssp             HHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence            99999999  899999999999999999999999999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=8.6e-32  Score=270.92  Aligned_cols=311  Identities=12%  Similarity=0.053  Sum_probs=274.4

Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375           62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA  141 (444)
Q Consensus        62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA  141 (444)
                      ...++..+|..+.+.|++++|+..|+++++.    +|.+.. ....++..                    +...|++++|
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~--------------------~~~~g~~~~A   79 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-AYYRRATV--------------------FLAMGKSKAA   79 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHH-HHHHHHHH--------------------HHHCCCHHHH
Confidence            4567888899999999999999999999998    544322 22334433                    3456789999


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHHH------------HHHHH
Q 013375          142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHIL------------ALCYY  206 (444)
Q Consensus       142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~l~  206 (444)
                      +..+     +.++...|+++.++..+|.++...|++++|+..|++++..+|+++   .+|..+            |.++.
T Consensus        80 ~~~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  154 (450)
T 2y4t_A           80 LPDL-----TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF  154 (450)
T ss_dssp             HHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-----HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9886     556788899999999999999999999999999999999999999   887766            66699


Q ss_pred             HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375          207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK  286 (444)
Q Consensus       207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~  286 (444)
                      ..|++++|+..|++++  ..+|+++.++..++.++. ..|++++|+..|+++++..|.+     ..+++.+|.++...  
T Consensus       155 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~--  224 (450)
T 2y4t_A          155 GSGDYTAAIAFLDKIL--EVCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKNDN-----TEAFYKISTLYYQL--  224 (450)
T ss_dssp             HHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHCSC-----HHHHHHHHHHHHHT--
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc--
Confidence            9999999999999999  899999999998887765 4789999999999999976554     57889999998765  


Q ss_pred             hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhcCCCC---
Q 013375          287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL------------SLEYAEQRKLNAAHYYAKMLLKLEGGSN---  351 (444)
Q Consensus       287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~P~~~---  351 (444)
                               |++++|+..|++++ .++|+++..+..+            |.++...|++++|+..|+++++++|+++   
T Consensus       225 ---------g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  294 (450)
T 2y4t_A          225 ---------GDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT  294 (450)
T ss_dssp             ---------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             ---------CCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence                     67999999999999 9999999998777            9999999999999999999999999973   


Q ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ...+..+|.++...|++++|+..++++++.+|  ++..+|+.+|.++...|++++|+..|++++++.|++...
T Consensus       295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  365 (450)
T 2y4t_A          295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI  365 (450)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence            13788999999999999999999999999999  899999999999999999999999999999998876553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-31  Score=280.09  Aligned_cols=327  Identities=11%  Similarity=-0.006  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhh---------------hcCCCCCCcc---
Q 013375           63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLY---------------CGGETCPPNL---  124 (444)
Q Consensus        63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~---------------~~~~~~~~~~---  124 (444)
                      ..++..+|.+|.+.|++++|+..|+++++.    +|.+...+ ..++...+.               ......+...   
T Consensus       200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  274 (597)
T 2xpi_A          200 ASMCYLRGQVYTNLSNFDRAKECYKEALMV----DAKCYEAF-DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL  274 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CchhhHHH-HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence            467888999999999999999999999998    44432221 111111100               0000000000   


Q ss_pred             ccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013375          125 RSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC  204 (444)
Q Consensus       125 ~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  204 (444)
                      ...+...|...|++++|+..+     +.++.. |.++.++..++.++...|++++|+..|+++++.+|++..+|..++.+
T Consensus       275 ~~~~~~~~~~~g~~~~A~~~~-----~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  348 (597)
T 2xpi_A          275 YMLKLNKTSHEDELRRAEDYL-----SSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS  348 (597)
T ss_dssp             HHTTSCTTTTHHHHHHHHHHH-----HTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred             HHHHHHHHcCcchHHHHHHHH-----HHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence            012356788889999999876     333444 78999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                      +...|++++|+..|++++  ..+|+++.++..++.++. ..|++++|+..|+++++..|.+     ..+|..+|.+|...
T Consensus       349 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~  420 (597)
T 2xpi_A          349 LHESGEKNKLYLISNDLV--DRHPEKAVTWLAVGIYYL-CVNKISEARRYFSKSSTMDPQF-----GPAWIGFAHSFAIE  420 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHH--HHCTTSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHH--hhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc
Confidence            999999999999999999  899999999988887765 4799999999999999965443     46889999998764


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA  364 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~  364 (444)
                                 |++++|++.|++++ +.+|+++.+++.+|.++...|++++|++.|+++++++|++ ..+|..+|.++..
T Consensus       421 -----------g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~  487 (597)
T 2xpi_A          421 -----------GEHDQAISAYTTAA-RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFN  487 (597)
T ss_dssp             -----------TCHHHHHHHHHHHH-HTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_pred             -----------CCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence                       67999999999999 9999999999999999999999999999999999999999 5999999999999


Q ss_pred             ccCHHHHHHHHHHHHhh------cCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          365 QKRYEDAETILNAALDQ------TGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~------~P~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .|++++|+..|+++++.      +|  ++ ..+|..+|.++...|++++|+..|++++++.|++..
T Consensus       488 ~g~~~~A~~~~~~~~~~~~~~~~~p--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          488 KSDMQTAINHFQNALLLVKKTQSNE--KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCS--GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             hCCHHHHHHHHHHHHHhhhccccch--hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999998      56  44 789999999999999999999999999999876543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=3.6e-32  Score=266.10  Aligned_cols=310  Identities=14%  Similarity=0.053  Sum_probs=250.0

Q ss_pred             HHHHHHHHHHHhCChHHHHH-HHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013375           65 AVELLPELWKLADAPRETIM-SYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL  143 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~-~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~  143 (444)
                      .....+..+...|++++|+. .|++++...+..+..... ....++.                    .+...|++++|+.
T Consensus        27 ~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~-~~~~~~~--------------------~~~~~g~~~~A~~   85 (368)
T 1fch_A           27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP-QPFEEGL--------------------RRLQEGDLPNAVL   85 (368)
T ss_dssp             -------------------CHHHHCCCCCCSSCTTTTCS-SHHHHHH--------------------HHHHTTCHHHHHH
T ss_pred             HHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchH-HHHHHHH--------------------HHHHCCCHHHHHH
Confidence            33334456778899999999 999999882221100000 0122332                    3445788999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375          144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS  223 (444)
Q Consensus       144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~  223 (444)
                      .+     +.++...|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++ 
T Consensus        86 ~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-  159 (368)
T 1fch_A           86 LF-----EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL-  159 (368)
T ss_dssp             HH-----HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HH-----HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence            86     556788999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCChHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh
Q 013375          224 GSEDPKCLPALLIA---------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA  288 (444)
Q Consensus       224 ~~~~P~~~~a~~~~---------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~  288 (444)
                       ..+|++..++...               .+.++ ..|++++|+..++++++..|...   ...++..+|.++...    
T Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~l~~~~~~~----  230 (368)
T 1fch_A          160 -RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI---DPDVQCGLGVLFNLS----  230 (368)
T ss_dssp             -HTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC---CHHHHHHHHHHHHHT----
T ss_pred             -HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc---cHHHHHHHHHHHHHc----
Confidence             8999988766421               23334 57899999999999999765521   256888999998764    


Q ss_pred             hchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013375          289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY  368 (444)
Q Consensus       289 ~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~  368 (444)
                             |++++|+..|++++ .++|+++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++
T Consensus       231 -------g~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          231 -------GEYDKAVDCFTAAL-SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAH  301 (368)
T ss_dssp             -------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCH
T ss_pred             -------CCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCH
Confidence                   67999999999999 9999999999999999999999999999999999999999 59999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          369 EDAETILNAALDQTGKWEQ-----------GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       369 ~eA~~~~~~al~~~P~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ++|+.+++++++..|  ++           ..+|..+|.++..+|++++|...++++++..++.
T Consensus       302 ~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  363 (368)
T 1fch_A          302 REAVEHFLEALNMQR--KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM  363 (368)
T ss_dssp             HHHHHHHHHHHHHHH--TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC--CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence            999999999999999  66           8999999999999999999999999999887643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.8e-31  Score=251.91  Aligned_cols=289  Identities=13%  Similarity=0.027  Sum_probs=249.2

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013375           65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL  144 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~  144 (444)
                      .+..++..+...|++++|+..|+++++.    +|.+... ...++..                    +...|++++|+..
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~-~~~~~~~--------------------~~~~~~~~~A~~~   78 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASC-LPVHIGT--------------------LVELNKANELFYL   78 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTT-HHHHHHH--------------------HHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhh-HHHHHHH--------------------HHHhhhHHHHHHH
Confidence            4455667888999999999999999998    4433211 1122222                    2335688999887


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375          145 LMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS  223 (444)
Q Consensus       145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~  223 (444)
                      +     +.++...|+++.++..+|.++...| ++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ 
T Consensus        79 ~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-  152 (330)
T 3hym_B           79 S-----HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA-  152 (330)
T ss_dssp             H-----HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH-
T ss_pred             H-----HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Confidence            5     4566788999999999999999999 99999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375          224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ  303 (444)
Q Consensus       224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~  303 (444)
                       ...|++..++..++.++. ..|++++|+.+++++++..|.+     ..+++.+|.++...           |++++|+.
T Consensus       153 -~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~  214 (330)
T 3hym_B          153 -QLMKGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPED-----PFVMHEVGVVAFQN-----------GEWKTAEK  214 (330)
T ss_dssp             -HHTTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHH
T ss_pred             -HhccccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------ccHHHHHH
Confidence             899999999888877765 4789999999999999965543     56888999998764           67999999


Q ss_pred             HHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          304 ALVSAARSTN---------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       304 ~~~~al~~~~---------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|++++ .+.         |.++.+++++|.++...|++++|+..|+++++++|++. .+|..+|.++..+|++++|+.+
T Consensus       215 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          215 WFLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-STYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHHHH-HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-HHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHH-HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-HHHHHHHHHHHHhccHHHHHHH
Confidence            999999 887         88889999999999999999999999999999999995 9999999999999999999999


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHH-HHhCCHHH
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQ-LVQGQLKG  406 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~-~~~g~~~~  406 (444)
                      ++++++.+|  ++..++..+|.++ ...|+.+.
T Consensus       293 ~~~al~~~p--~~~~~~~~l~~~~~~~~g~~~a  323 (330)
T 3hym_B          293 FHTALGLRR--DDTFSVTMLGHCIEMYIGDSEA  323 (330)
T ss_dssp             HHTTTTTCS--CCHHHHHHHHHHHHTTTTC---
T ss_pred             HHHHHccCC--CchHHHHHHHHHHHHHhCchhc
Confidence            999999999  8999999999988 56666543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.98  E-value=2e-30  Score=249.12  Aligned_cols=266  Identities=11%  Similarity=0.050  Sum_probs=244.7

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-  209 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-  209 (444)
                      .+...|++++|+..+     +.++..+|.++.++..++.++...|++++|+..++++++.+|+++.+|+.+|.++...| 
T Consensus        31 ~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (330)
T 3hym_B           31 RHYYNCDFKMCYKLT-----SVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH  105 (330)
T ss_dssp             HHHHTTCHHHHHHHH-----HHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred             HHHHcCCHHHHHHHH-----HHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence            344568999999876     55678899999999999999999999999999999999999999999999999999999 


Q ss_pred             CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh
Q 013375          210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI  289 (444)
Q Consensus       210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~  289 (444)
                      ++++|+..|++++  ..+|+++.++..+|.++. ..|++++|+..++++++..|.+     ..+++.+|.++...     
T Consensus       106 ~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~-----  172 (330)
T 3hym_B          106 KNEHARRYLSKAT--TLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGC-----HLPMLYIGLEYGLT-----  172 (330)
T ss_dssp             CHHHHHHHHHHHH--TTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTC-----SHHHHHHHHHHHHT-----
T ss_pred             hHHHHHHHHHHHH--HhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHH-----
Confidence            9999999999999  899999999998887765 4789999999999999976554     46788899988764     


Q ss_pred             chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---------CCCChHHHHHHHH
Q 013375          290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---------GGSNLKGWLLMAR  360 (444)
Q Consensus       290 ~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------P~~~~~~~~~la~  360 (444)
                            |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++++.         |... .+|..+|.
T Consensus       173 ------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~la~  244 (330)
T 3hym_B          173 ------NNSKLAERFFSQAL-SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE-PLLNNLGH  244 (330)
T ss_dssp             ------TCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC-HHHHHHHH
T ss_pred             ------hhHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH-HHHHHHHH
Confidence                  67999999999999 9999999999999999999999999999999999997         6664 89999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       361 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ++..+|++++|+.+++++++..|  ++..+++.+|.++..+|++++|+..|++++++.|++...
T Consensus       245 ~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (330)
T 3hym_B          245 VCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS  306 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence            99999999999999999999999  899999999999999999999999999999998876553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.98  E-value=7.4e-29  Score=240.39  Aligned_cols=304  Identities=11%  Similarity=0.058  Sum_probs=253.0

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      .++++.+|.++..+|++++|+..|+++++.        .|..           ..++..+|.++...|++++|+..|+++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~   97 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDF-----------TAARLQRGHLLLKQGKLDEAEDDFKKV   97 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCc-----------chHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            468999999999999999999999999987        2332           257889999999999999999999999


Q ss_pred             hCcCCCCCh---HHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013375           90 LLPCWNLDA---ETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDH  166 (444)
Q Consensus        90 L~~~~~~~~---~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~  166 (444)
                      ++.    +|   .+.... ..++.......        ....+..+...|++++|+..+     +.++...|.++.++..
T Consensus        98 ~~~----~~~~~~~~~~~-~~l~~~~~~~~--------~~~~a~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~  159 (359)
T 3ieg_A           98 LKS----NPSEQEEKEAE-SQLVKADEMQR--------LRSQALDAFDGADYTAAITFL-----DKILEVCVWDAELREL  159 (359)
T ss_dssp             HTS----CCCHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHH
T ss_pred             Hhc----CCcccChHHHH-HHHHHHHHHHH--------HHHHHHHHHHccCHHHHHHHH-----HHHHHhCCCchHHHHH
Confidence            999    66   443322 22211100000        011123456678999999986     5567888999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH---------
Q 013375          167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA---------  237 (444)
Q Consensus       167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~---------  237 (444)
                      +|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++  ..+|++..++...         
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL--KLDQDHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999  8999998865432         


Q ss_pred             ---HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          238 ---SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       238 ---~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                         +.++ ...|++++|+..++++++..|.+ ......++..+|.++...           |++++|+..|++++ +.+|
T Consensus       238 ~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~  303 (359)
T 3ieg_A          238 IESAEEL-IRDGRYTDATSKYESVMKTEPSV-AEYTVRSKERICHCFSKD-----------EKPVEAIRICSEVL-QMEP  303 (359)
T ss_dssp             HHHHHHH-HHTTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCT
T ss_pred             HHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HhCc
Confidence               4444 45799999999999999976543 334456788899998764           68999999999999 9999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR  367 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~  367 (444)
                      +++.+++.+|.++...|++++|+..|+++++++|++ ..++..++.+...+++
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 4999999888766553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-29  Score=257.10  Aligned_cols=239  Identities=13%  Similarity=0.020  Sum_probs=217.8

Q ss_pred             cCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013375          128 MGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG  207 (444)
Q Consensus       128 ~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~  207 (444)
                      ++..+...|++++|+..+     +.++...|. +.++..+|.++...|++++|+..|++++..+|+++.+|+.+|.++..
T Consensus       243 ~~~~~~~~~~~~~A~~~~-----~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDI-----KKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHH-----HHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH-----HHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence            345677789999999876     456678899 99999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013375          208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV  287 (444)
Q Consensus       208 ~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~  287 (444)
                      .|++++|+..|++++  ..+|+++.++..++.++ ...|++++|+..++++++..|.+     ..+++.+|.++...   
T Consensus       317 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~---  385 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAK--ELDPENIFPYIQLACLA-YRENKFDDCETLFSEAKRKFPEA-----PEVPNFFAEILTDK---  385 (514)
T ss_dssp             TTCTTHHHHHHHHHH--HTCSSCSHHHHHHHHHT-TTTTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHT---
T ss_pred             hCCHHHHHHHHHHHH--HhChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccC-----HHHHHHHHHHHHHC---
Confidence            999999999999999  89999999998887765 56799999999999999976544     46788999998764   


Q ss_pred             hhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          288 AITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAE---QRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                              |++++|+..|++++ ..+|+++.      +++.+|.++..   .|++++|+..|++++.++|++ ..+|..+
T Consensus       386 --------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l  455 (514)
T 2gw1_A          386 --------NDFDKALKQYDLAI-ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGL  455 (514)
T ss_dssp             --------TCHHHHHHHHHHHH-HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred             --------CCHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence                    67999999999999 99999966      99999999999   999999999999999999999 5999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      |.++...|++++|+.+|+++++.+|  ++..++..+.
T Consensus       456 a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~  490 (514)
T 2gw1_A          456 AQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAIT  490 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHHH
Confidence            9999999999999999999999999  8888877663

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=3.3e-31  Score=262.69  Aligned_cols=246  Identities=11%  Similarity=0.045  Sum_probs=225.7

Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHhhcCCCCCCChH
Q 013375          154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~-~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      +..+|+++++|..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|++++  .++|+++.
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al--~l~P~~~~  167 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--EEQPKNYQ  167 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHCCCCHH
Confidence            466788999999999999999999999999999999999999999999999999997 999999999999  89999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST  312 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~  312 (444)
                      +++.+|.++. ..|++++|+.+|+++|++.|.+     ..+|+++|.++...           |++++|+..|++++ ++
T Consensus       168 a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~-----~~a~~~lg~~~~~~-----------g~~~eAl~~~~~al-~l  229 (382)
T 2h6f_A          168 VWHHRRVLVE-WLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF-----------KLWDNELQYVDQLL-KE  229 (382)
T ss_dssp             HHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HH
T ss_pred             HHHHHHHHHH-HccCHHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-Hh
Confidence            9999887764 5789999999999999976554     67999999999765           57899999999999 99


Q ss_pred             CCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhcCCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhcCC
Q 013375          313 NMRDLSILYRLSLEYAE-QRKLNAA-----HYYAKMLLKLEGGSNLKGWLLMARILSAQK--RYEDAETILNAALDQTGK  384 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~-~g~~~~A-----~~~~~~al~l~P~~~~~~~~~la~~l~~~g--~~~eA~~~~~~al~~~P~  384 (444)
                      +|+++.+|+++|.++.. .|.+++|     +.+|+++++++|++ ..+|+++|.++..+|  ++++|+..++++ +..| 
T Consensus       230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-  306 (382)
T 2h6f_A          230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-  306 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-
T ss_pred             CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-
Confidence            99999999999999999 5665888     59999999999999 599999999999988  699999999998 8899 


Q ss_pred             CCcHHHHHHHHHHHHHhC--------C-HHHHHHHHHHH-HHHHHhhhh
Q 013375          385 WEQGELLRTKAKVQLVQG--------Q-LKGAVETYTHL-LAALQVQTK  423 (444)
Q Consensus       385 ~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~l~~~~~~  423 (444)
                       ++..++..+|.++..+|        + +++|+..|+++ +++.|.+.+
T Consensus       307 -~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~  354 (382)
T 2h6f_A          307 -SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE  354 (382)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             -CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence             89999999999999985        2 58999999999 888887765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=1e-29  Score=243.77  Aligned_cols=267  Identities=15%  Similarity=0.052  Sum_probs=240.5

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG  209 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g  209 (444)
                      ..+...|++++|+..+     +.++...|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus        29 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~  103 (327)
T 3cv0_A           29 LSMLKLANLAEAALAF-----EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH  103 (327)
T ss_dssp             HHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence            3455678999999876     55677889999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHhhcCCCCCCChHHHHHH--------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013375          210 EDLVALNLLRTLLSGSEDPKCLPALLIA--------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC  275 (444)
Q Consensus       210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~--------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~  275 (444)
                      ++++|+..|++++  ..+|++..++...              +..++...|++++|+.+++++++..|.+     ..++.
T Consensus       104 ~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~  176 (327)
T 3cv0_A          104 NANAALASLRAWL--LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND-----AQLHA  176 (327)
T ss_dssp             CHHHHHHHHHHHH--HTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-----HHHHH
T ss_pred             CHHHHHHHHHHHH--HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-----HHHHH
Confidence            9999999999999  8999988777654              3313556789999999999999975543     56888


Q ss_pred             HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH
Q 013375          276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW  355 (444)
Q Consensus       276 ~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  355 (444)
                      .+|.++...           |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|
T Consensus       177 ~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~  243 (327)
T 3cv0_A          177 SLGVLYNLS-----------NNYDSAAANLRRAV-ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-VRVM  243 (327)
T ss_dssp             HHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             HHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHH
Confidence            999988764           67999999999999 9999999999999999999999999999999999999998 5999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhcCCCC------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          356 LLMARILSAQKRYEDAETILNAALDQTGKWE------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       356 ~~la~~l~~~g~~~eA~~~~~~al~~~P~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ..+|.++..+|++++|+.++++++...|  +            +..++..+|.++..+|++++|...+++++++.|+..+
T Consensus       244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          244 YNMAVSYSNMSQYDLAAKQLVRAIYMQV--GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHT--TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC--ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence            9999999999999999999999999999  7            7899999999999999999999999999999997655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=2.2e-30  Score=254.04  Aligned_cols=263  Identities=16%  Similarity=0.107  Sum_probs=221.2

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE  210 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~  210 (444)
                      .+...|++++|+..+     +.++...|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|+
T Consensus        74 ~~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  148 (365)
T 4eqf_A           74 KRLKEGDLPVTILFM-----EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH  148 (365)
T ss_dssp             HHHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHH-----HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence            344567899999876     556778899999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcCCCCCCChHHHHHH----------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013375          211 DLVALNLLRTLLSGSEDPKCLPALLIA----------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS  280 (444)
Q Consensus       211 ~~~A~~~~~~al~~~~~P~~~~a~~~~----------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~  280 (444)
                      +++|+..|++++  .++|++..++...          +. ++...|++++|+.+++++++..|...   ...+++.+|.+
T Consensus       149 ~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~l~~~  222 (365)
T 4eqf_A          149 QQDACEALKNWI--KQNPKYKYLVKNKKGSPGLTRRMSK-SPVDSSVLEGVKELYLEAAHQNGDMI---DPDLQTGLGVL  222 (365)
T ss_dssp             HHHHHHHHHHHH--HHCHHHHCC--------------------CCHHHHHHHHHHHHHHHHSCSSC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HhCccchHHHhhhccchHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhCcCcc---CHHHHHHHHHH
Confidence            999999999999  8899877665543          33 45668899999999999999765421   25678889988


Q ss_pred             hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013375          281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR  360 (444)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~  360 (444)
                      +...           |++++|+..|++++ +++|+++.+|+++|.++...|++++|+..|+++++++|++ ..+|.++|.
T Consensus       223 ~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~  289 (365)
T 4eqf_A          223 FHLS-----------GEFNRAIDAFNAAL-TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGI  289 (365)
T ss_dssp             HHHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred             HHHC-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHH
Confidence            8664           67899999999999 9999999999999999999999999999999999999998 599999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhcCCCC----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          361 ILSAQKRYEDAETILNAALDQTGKWE----------QGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       361 ~l~~~g~~~eA~~~~~~al~~~P~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      ++..+|++++|+.+|+++++..|+..          +..+|..++.++..+|+.+.+....++.++.
T Consensus       290 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~  356 (365)
T 4eqf_A          290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV  356 (365)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence            99999999999999999999988311          3678999999999999999988877765443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=1.2e-28  Score=253.47  Aligned_cols=308  Identities=13%  Similarity=0.095  Sum_probs=253.8

Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375           62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA  141 (444)
Q Consensus        62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA  141 (444)
                      ...++..+|..+...|++++|+..|+++++.    +|.+.. ....++..                    +...|++++|
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~-~~~~la~~--------------------~~~~g~~~~A   78 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPV-FYSNISAC--------------------YISTGDLEKV   78 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcH-HHHHHHHH--------------------HHHcCCHHHH
Confidence            4578889999999999999999999999999    555432 23344443                    3446789999


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH-----------------------
Q 013375          142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY-----------------------  198 (444)
Q Consensus       142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------------  198 (444)
                      +..+     +.++..+|+++.++..+|.++...|++++|+..|+ ++..+|+....+                       
T Consensus        79 ~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~  152 (537)
T 3fp2_A           79 IEFT-----TKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK  152 (537)
T ss_dssp             HHHH-----HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHH-----HHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9986     55678899999999999999999999999999996 888888765543                       


Q ss_pred             ---------------------------------------------HHHH--------HHHHHCCCchHHHHHHHHhhcCC
Q 013375          199 ---------------------------------------------HILA--------LCYYGAGEDLVALNLLRTLLSGS  225 (444)
Q Consensus       199 ---------------------------------------------~~la--------~~l~~~g~~~~A~~~~~~al~~~  225 (444)
                                                                   ..++        ......|++++|+..|++++  .
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l--~  230 (537)
T 3fp2_A          153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL--S  230 (537)
T ss_dssp             ------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred             CccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--H
Confidence                                                         1122        22223358999999999999  8


Q ss_pred             CCCCChHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhH
Q 013375          226 EDPKCLPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQ  298 (444)
Q Consensus       226 ~~P~~~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~  298 (444)
                      .+|+++.+       +..+|.+ +...|++++|+..++++++..|.      ..+++.+|.++...           |++
T Consensus       231 ~~p~~~~~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~-----------~~~  292 (537)
T 3fp2_A          231 ANTVDDPLRENAALALCYTGIF-HFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADK-----------ENS  292 (537)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCS-----------SCC
T ss_pred             HCCCcchhhHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHh-----------cCH
Confidence            99998764       4444444 44578999999999999996443      36788999998765           578


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      ++|+..|++++ ..+|+++.+++.+|.++...|++++|+..|+++++++|++. .+|..+|.++...|++++|+.+++++
T Consensus       293 ~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~  370 (537)
T 3fp2_A          293 QEFFKFFQKAV-DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-YPYIQLACLLYKQGKFTESEAFFNET  370 (537)
T ss_dssp             HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999 99999999999999999999999999999999999999995 99999999999999999999999999


Q ss_pred             HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ++..|  ++..++..+|.++...|++++|+..|++++++.|+....
T Consensus       371 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          371 KLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence            99999  899999999999999999999999999999999977653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.4e-29  Score=253.94  Aligned_cols=352  Identities=12%  Similarity=0.019  Sum_probs=267.5

Q ss_pred             HHhhhh--cccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013375           16 KAKCLQ--GLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC   93 (444)
Q Consensus        16 ~g~~~~--~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~   93 (444)
                      .-.|++  .+++.+.++..++..|......    .+...         ....+..+|.++...|++++|+..|++++++.
T Consensus        15 ~l~chf~w~l~~~~~~l~~~e~~~~~~~~~----~~~~~---------~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~   81 (472)
T 4g1t_A           15 QLKCHFTWNLMEGENSLDDFEDKVFYRTEF----QNREF---------KATMCNLLAYLKHLKGQNEAALECLRKAEELI   81 (472)
T ss_dssp             TSCSTTTSCTTTTCCCHHHHHHHHHHHTTS----CC------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhhChHHHhHHHHHHHHHHHHHHHHHHHHh----CCChh---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            335766  5677777777777666442111    11111         12467889999999999999999999999861


Q ss_pred             -----CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH--HHHH-hhCCCCHHHHH
Q 013375           94 -----WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR--KVAL-KRIEWDPSILD  165 (444)
Q Consensus        94 -----~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~--~~~l-~~~p~~~~~~~  165 (444)
                           ...+|.... ...++|                    .+|...|++++|+..+..+..  .... ...+..+.++.
T Consensus        82 ~~~~~~~~~~~~~~-~~~nla--------------------~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~  140 (472)
T 4g1t_A           82 QQEHADQAEIRSLV-TWGNYA--------------------WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC  140 (472)
T ss_dssp             HHHSGGGCTTTTHH-HHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred             HhcCccccchHHHH-HHHHHH--------------------HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence                 011221111 112233                    355668899999987643311  1000 11345778999


Q ss_pred             HHHHHHHhc--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          166 HLSFAFSIA--GDLSSLATQIEELLPGIINRKERYHILALCYY---GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       166 ~lg~~l~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~---~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      .+|.++...  +++++|+++|+++++++|++++++..+|.++.   ..|++++|+..|++++  .++|+++.++..++..
T Consensus       141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~l~p~~~~~~~~l~~~  218 (472)
T 4g1t_A          141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--RLNPDNQYLKVLLALK  218 (472)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--HHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--hcCCcchHHHHHHHHH
Confidence            999888765  47999999999999999999999999998855   4688899999999999  8999999988776644


Q ss_pred             H---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375          241 C---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL  317 (444)
Q Consensus       241 ~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~  317 (444)
                      +   ....++.++|+.++++++...|..     ..++..+|.+|...           |++++|+..|++++ +.+|+++
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~  281 (472)
T 4g1t_A          219 LHKMREEGEEEGEGEKLVEEALEKAPGV-----TDVLRSAAKFYRRK-----------DEPDKAIELLKKAL-EYIPNNA  281 (472)
T ss_dssp             HHHCC------CHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHHc-----------CchHHHHHHHHHHH-HhCCChH
Confidence            3   234578889999999999965543     56889999998765           67999999999999 9999999


Q ss_pred             HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQ-------------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       318 ~a~~~lg~~~~~~-------------------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      .+++++|.+|...                   +.+++|+..|+++++++|++. .++..+|.++..+|++++|+.+|+++
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF-RVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC-CCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh-hhhhhHHHHHHHhccHHHHHHHHHHH
Confidence            9999999998643                   457889999999999999995 99999999999999999999999999


Q ss_pred             HhhcCCCCcH---HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          379 LDQTGKWEQG---ELLRTKAKV-QLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       379 l~~~P~~~~~---~~~~~la~~-~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ++..|  ++.   .+++.+|.+ +...|++++|+..|++++++.|+...
T Consensus       361 L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~  407 (472)
T 4g1t_A          361 FSKEL--TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE  407 (472)
T ss_dssp             HHSCC--CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             HhcCC--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence            99998  543   346677765 45789999999999999999876543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=1.7e-29  Score=230.86  Aligned_cols=211  Identities=19%  Similarity=0.112  Sum_probs=176.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      |+++.++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++  .++|+++.++..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--ARTPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCcHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999  8999999999888


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL  317 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~  317 (444)
                      |.++....              . ....              ..           ...|++++|+..|++++ +++|+++
T Consensus        80 g~~~~~~~--------------~-~~~~--------------~~-----------~~~g~~~~A~~~~~~al-~~~P~~~  118 (217)
T 2pl2_A           80 SEAYVALY--------------R-QAED--------------RE-----------RGKGYLEQALSVLKDAE-RVNPRYA  118 (217)
T ss_dssp             HHHHHHHH--------------H-TCSS--------------HH-----------HHHHHHHHHHHHHHHHH-HHCTTCH
T ss_pred             HHHHHHhh--------------h-hhhh--------------hc-----------ccccCHHHHHHHHHHHH-HhCcccH
Confidence            77654310              0 0000              00           11367999999999999 9999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      .+++++|.++..+|++++|+..|+++++++ ++ ..+|.++|.++..+|++++|+..|+++++.+|  ++..+++++|.+
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~  194 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASA  194 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence            999999999999999999999999999999 87 59999999999999999999999999999999  999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHH
Q 013375          398 QLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       398 ~~~~g~~~~A~~~~~~al  415 (444)
                      +..+|++++|+..|+++-
T Consensus       195 ~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          195 LLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HTC---------------
T ss_pred             HHHccCHHHHHHHHHHHh
Confidence            999999999999998864

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=1.5e-29  Score=247.98  Aligned_cols=246  Identities=14%  Similarity=0.048  Sum_probs=215.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK  239 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~  239 (444)
                      +...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++  .++|+++.++..+|.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL--ELQPNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence            445699999999999999999999999999999999999999999999999999999999999  899999999998887


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCcchh-----hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          240 ICGEYPDLAEEGATFASRALECLGDGCDQM-----ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      ++. ..|++++|+..++++++..|......     ....+..+|.++...           |++++|+..|++++ +++|
T Consensus       142 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~p  208 (365)
T 4eqf_A          142 SYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS-----------SVLEGVKELYLEAA-HQNG  208 (365)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC-----------HHHHHHHHHHHHHH-HHSC
T ss_pred             HHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh-----------hhHHHHHHHHHHHH-HhCc
Confidence            764 57899999999999999654322111     012223446666554           67999999999999 9999


Q ss_pred             C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       315 ~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                      +  ++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|+++++..|  ++..+++
T Consensus       209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~  285 (365)
T 4eqf_A          209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-YSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRY  285 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHH
Confidence            9  99999999999999999999999999999999999 59999999999999999999999999999999  8999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ++|.++..+|++++|+..|++++++.|+..+
T Consensus       286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          286 NLGISCINLGAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence            9999999999999999999999999998654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=3.1e-29  Score=245.24  Aligned_cols=264  Identities=14%  Similarity=0.099  Sum_probs=224.6

Q ss_pred             CCcHHHHHH-HHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375          135 RNNIEEAIL-LLMILLRKVALKRIEWDP----SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG  209 (444)
Q Consensus       135 ~~~~~eAi~-~l~~~~~~~~l~~~p~~~----~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g  209 (444)
                      .+++++|+. .+     +.++...|.++    ..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|
T Consensus        38 ~~~~~~a~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           38 LSDYDDLTSATY-----DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             --------CHHH-----HCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhh-----hHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence            456777776 43     33445566654    578999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh-----------HHHHHhh
Q 013375          210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES-----------TANCLLG  278 (444)
Q Consensus       210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~-----------~a~~~lg  278 (444)
                      ++++|+..|++++  .++|+++.++..+|.++. ..|++++|+..++++++..|.+......           ..+..+|
T Consensus       113 ~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 1fch_A          113 QELLAISALRRCL--ELKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG  189 (368)
T ss_dssp             CHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred             CHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence            9999999999999  899999999998887765 4789999999999999966544321100           0011344


Q ss_pred             hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHH
Q 013375          279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL  356 (444)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  356 (444)
                      .++            ..|++++|+..|++++ +++|+  ++.+++.+|.++...|++++|+..|+++++++|++ ..+|.
T Consensus       190 ~~~------------~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~  255 (368)
T 1fch_A          190 SLL------------SDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWN  255 (368)
T ss_dssp             HHH------------HHHHHHHHHHHHHHHH-HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred             HHh------------hcccHHHHHHHHHHHH-HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHH
Confidence            443            3478999999999999 99999  89999999999999999999999999999999999 59999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       357 ~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .+|.++...|++++|+..|+++++..|  ++..+++.+|.++..+|++++|+..|++++++.|+..
T Consensus       256 ~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  319 (368)
T 1fch_A          256 KLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  319 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999  8999999999999999999999999999999999773

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=1.4e-29  Score=250.99  Aligned_cols=225  Identities=10%  Similarity=-0.020  Sum_probs=188.3

Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375          154 LKRIEWDPSILDHLSFAFSIAGD-LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       154 l~~~p~~~~~~~~lg~~l~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      +..+|++..+|+.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++|  .++|++..
T Consensus       124 l~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal--~ldP~~~~  201 (382)
T 2h6f_A          124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL--NQDAKNYH  201 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH--HHCTTCHH
T ss_pred             HHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCccCHH
Confidence            34457777788888888888886 8888888888888888888888888888888888888888888888  78888888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHH-----HHHHHH
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA-----LQALVS  307 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA-----~~~~~~  307 (444)
                      ++..+|.++. ..|++++|+.+|+++|++.|.+     ..+|+++|.++...+          +..++|     ++.|++
T Consensus       202 a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~-----~~a~~~lg~~l~~l~----------~~~~eA~~~~el~~~~~  265 (382)
T 2h6f_A          202 AWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRN-----NSVWNQRYFVISNTT----------GYNDRAVLEREVQYTLE  265 (382)
T ss_dssp             HHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT----------CSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhc----------CcchHHHHHHHHHHHHH
Confidence            8887776654 4678888888888888865443     568888888877632          222444     799999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc---------CHHHHHHHHH
Q 013375          308 AARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK---------RYEDAETILN  376 (444)
Q Consensus       308 al~~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g---------~~~eA~~~~~  376 (444)
                      ++ .++|++..+|+++|.++...|  ++++|++.++++ +++|++ ..++..+|.++..+|         .+++|+.+|+
T Consensus       266 Al-~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~  342 (382)
T 2h6f_A          266 MI-KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCE  342 (382)
T ss_dssp             HH-HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HH-HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            99 999999999999999999988  799999999998 999999 599999999999985         3699999999


Q ss_pred             HH-HhhcCCCCcHHHHHHHHHHHHHh
Q 013375          377 AA-LDQTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       377 ~a-l~~~P~~~~~~~~~~la~~~~~~  401 (444)
                      ++ ++.+|  .....|..++..+..+
T Consensus       343 ~l~~~~DP--~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          343 ILAKEKDT--IRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHTTCG--GGHHHHHHHHHHHHHH
T ss_pred             HHHHHhCc--hhHHHHHHHHHHHHHH
Confidence            99 99999  8999999998877654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.8e-27  Score=217.99  Aligned_cols=231  Identities=13%  Similarity=0.032  Sum_probs=211.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-------hH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-------LP  232 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-------~~  232 (444)
                      .++++..+|.++...|++++|+..|+++++.+ +++.+|+.+|.++...|++++|+..|++++  ..+|++       +.
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH--HhCcccccchHHHHH
Confidence            46788999999999999999999999999999 999999999999999999999999999999  888877       67


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST  312 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~  312 (444)
                      ++..+|.++. ..|++++|+.+++++++..+.      ..       ++.           +.+++++|+..+++++ ..
T Consensus        81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~------~~-------~~~-----------~~~~~~~a~~~~~~~~-~~  134 (258)
T 3uq3_A           81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT------AD-------ILT-----------KLRNAEKELKKAEAEA-YV  134 (258)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC------HH-------HHH-----------HHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHHHHH-HcccHHHHHHHHHHHHhcCch------hH-------HHH-----------HHhHHHHHHHHHHHHH-Hc
Confidence            7887777654 579999999999999996432      11       222           2357899999999999 99


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                      +|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+++++++.+|  ++..+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~  211 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYI  211 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHHH
Confidence            99999999999999999999999999999999999999 59999999999999999999999999999999  8999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          393 TKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .+|.++..+|++++|+..|++++++.|+..
T Consensus       212 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  241 (258)
T 3uq3_A          212 RKATAQIAVKEYASALETLDAARTKDAEVN  241 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence            999999999999999999999999996543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=2.3e-27  Score=222.19  Aligned_cols=242  Identities=15%  Similarity=0.086  Sum_probs=211.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH----HHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALL  235 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~----a~~  235 (444)
                      +++++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++  . .|+++.    ++.
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~~~~~~   78 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF--S-KVNATKAKSADFE   78 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--T-TSCTTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--h-ccCchhHHHHHHH
Confidence            456778999999999999999999999999999999999999999999999999999999999  6 554443    366


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR  315 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~  315 (444)
                      .+|.++ ...|++++|+.+++++++..|.+     ..++..+|.++...           |++++|+..|++++ +++|+
T Consensus        79 ~lg~~~-~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~  140 (272)
T 3u4t_A           79 YYGKIL-MKKGQDSLAIQQYQAAVDRDTTR-----LDMYGQIGSYFYNK-----------GNFPLAIQYMEKQI-RPTTT  140 (272)
T ss_dssp             HHHHHH-HHTTCHHHHHHHHHHHHHHSTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHGGGC-CSSCC
T ss_pred             HHHHHH-HHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHh-hcCCC
Confidence            677665 45789999999999999975544     46889999998765           67999999999999 99999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHhhc---CCCC---
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR---YEDAETILNAALDQT---GKWE---  386 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~---~~eA~~~~~~al~~~---P~~~---  386 (444)
                      ++.+++++|......+++++|+..|+++++++|++ ..++..+|.++...|+   +++|+..++++++..   |  +   
T Consensus       141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~  217 (272)
T 3u4t_A          141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG--AKYK  217 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG--GGGH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc--ccch
Confidence            99999999955555679999999999999999999 5999999999999999   999999999999886   5  3   


Q ss_pred             --cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          387 --QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       387 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                        ...++..+|.++...|++++|+..|++++++.|++....
T Consensus       218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  258 (272)
T 3u4t_A          218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI  258 (272)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence              237899999999999999999999999999999877643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=7.5e-27  Score=223.76  Aligned_cols=239  Identities=15%  Similarity=0.041  Sum_probs=215.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK  239 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~  239 (444)
                      +...+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++  ..+|+++.++..++.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR--MLDPKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCcCCHHHHHHHHH
Confidence            445778999999999999999999999999999999999999999999999999999999999  899999999988887


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh--------------hh-hhhhhhhhhhchHHHHhhHHHHHHH
Q 013375          240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL--------------GI-SLSAQSKVAITDFDRATRQAKALQA  304 (444)
Q Consensus       240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l--------------g~-~~~~~~~~~~~~~~~~~~~~eA~~~  304 (444)
                      ++. ..|++++|+..++++++..|...     ..+..+              |. ++..           .|++++|+..
T Consensus        98 ~~~-~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~  160 (327)
T 3cv0_A           98 SHT-NEHNANAALASLRAWLLSQPQYE-----QLGSVNLQADVDIDDLNVQSEDFFFAA-----------PNEYRECRTL  160 (327)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHTSTTTT-----TC--------------------CCTTS-----------HHHHHHHHHH
T ss_pred             HHH-HcCCHHHHHHHHHHHHHhCCccH-----HHHHHHhHHHHHHHHHHHHHHhHHHHH-----------cccHHHHHHH
Confidence            764 57899999999999999655432     223333              33 3433           4679999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013375          305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       305 ~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~  384 (444)
                      |++++ +.+|+++.+++.+|.++...|++++|+..++++++++|++ ..+|..+|.++...|++++|+.+++++++..| 
T Consensus       161 ~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-  237 (327)
T 3cv0_A          161 LHAAL-EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-AQLWNKLGATLANGNRPQEALDAYNRALDINP-  237 (327)
T ss_dssp             HHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             HHHHH-hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence            99999 9999999999999999999999999999999999999999 59999999999999999999999999999999 


Q ss_pred             CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                       ++..+++.+|.++..+|++++|+..|++++++.|+.
T Consensus       238 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          238 -GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence             899999999999999999999999999999999984

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.95  E-value=5.8e-26  Score=217.02  Aligned_cols=277  Identities=10%  Similarity=0.036  Sum_probs=224.2

Q ss_pred             HHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH
Q 013375           73 WKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV  152 (444)
Q Consensus        73 ~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~  152 (444)
                      .+..|++++|+..++++...    +|++......-++.                    .|+..|++++|+..+     + 
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r--------------------~yi~~g~~~~al~~~-----~-   58 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYR--------------------AYLAQRKYGVVLDEI-----K-   58 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHH--------------------HHHHTTCHHHHHHHS-----C-
T ss_pred             HHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHH--------------------HHHHCCCHHHHHHHh-----c-
Confidence            46799999999999998887    77653211122222                    355678899998653     1 


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375          153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~  230 (444)
                        ...|.+..++..++..+...|+.++|++.|++++..  +|+++.+++.+|.++...|++++|+..|++       |++
T Consensus        59 --~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~  129 (291)
T 3mkr_A           59 --PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS  129 (291)
T ss_dssp             --TTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS
T ss_pred             --ccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC
Confidence              224556678889999999999999999999998865  699999999999999999999999998865       888


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013375          231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR  310 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~  310 (444)
                      +.++..++.++. ..|++++|+..++++++..|.+.       ...++.++....       ...|++++|+..|++++ 
T Consensus       130 ~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~-------~~~l~~a~~~l~-------~~~~~~~eA~~~~~~~l-  193 (291)
T 3mkr_A          130 LECMAMTVQILL-KLDRLDLARKELKKMQDQDEDAT-------LTQLATAWVSLA-------AGGEKLQDAYYIFQEMA-  193 (291)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHH-------HCTTHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcH-------HHHHHHHHHHHH-------hCchHHHHHHHHHHHHH-
Confidence            999988888765 47999999999999999654321       222222222111       01367999999999999 


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH-HHHHHHHHHhhcCCCCcHH
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQTGKWEQGE  389 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e-A~~~~~~al~~~P~~~~~~  389 (444)
                      +.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++ +..+++++++++|  +++.
T Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--~~~~  270 (291)
T 3mkr_A          194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--SHPF  270 (291)
T ss_dssp             HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--CChH
Confidence            9999999999999999999999999999999999999999 4999999999999999987 5689999999999  8877


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHH
Q 013375          390 LLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       390 ~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      +.-    +..+.+.|+++...|
T Consensus       271 ~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          271 IKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHH----HHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHc
Confidence            543    456677788887766

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=2.3e-26  Score=215.32  Aligned_cols=243  Identities=12%  Similarity=0.058  Sum_probs=209.7

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHH
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYY  206 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~  206 (444)
                      .+...|++++|+..+     +.++..+|+++.++..+|.++...|++++|+..|++++. .|+++    .+|+.+|.++.
T Consensus        12 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVF-----NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHTTTCHHHHHHHH-----HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence            455678999999986     556788999999999999999999999999999999999 45444    45999999999


Q ss_pred             HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-hhhhhhh
Q 013375          207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQS  285 (444)
Q Consensus       207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~  285 (444)
                      ..|++++|+..|++++  ..+|+++.++..+|.++.. .|++++|+.+++++++..|.+     ..+++.+| .++..  
T Consensus        86 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~--  155 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTD-----PKVFYELGQAYYYN--  155 (272)
T ss_dssp             HTTCHHHHHHHHHHHH--HHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCSSCCC-----HHHHHHHHHHHHHT--
T ss_pred             HcccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhcCCCc-----HHHHHHHHHHHHHH--
Confidence            9999999999999999  8999999999988887654 789999999999999964433     57889999 76654  


Q ss_pred             hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhc---CCC----ChHHH
Q 013375          286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLE---GGS----NLKGW  355 (444)
Q Consensus       286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~---P~~----~~~~~  355 (444)
                                +++++|+..|++++ +++|+++.+++.+|.++...|+   +++|+..|++++++.   |+.    ...+|
T Consensus       156 ----------~~~~~A~~~~~~a~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  224 (272)
T 3u4t_A          156 ----------KEYVKADSSFVKVL-ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN  224 (272)
T ss_dssp             ----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence                      37899999999999 9999999999999999999999   999999999999987   542    02689


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375          356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG  402 (444)
Q Consensus       356 ~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g  402 (444)
                      ..+|.++...|++++|+.+++++++++|  ++..++-.++.+....+
T Consensus       225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          225 EYIAYYYTINRDKVKADAAWKNILALDP--TNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHC-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCc--cHHHHHHHhhhhhcccc
Confidence            9999999999999999999999999999  89999988877665443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.8e-26  Score=209.96  Aligned_cols=208  Identities=14%  Similarity=0.074  Sum_probs=185.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL  231 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~  231 (444)
                      .++.++..+|.++...|++++|+..|++++.++|++       +.+|+.+|.++...|++++|+..|++++  .++|+ .
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~-~  112 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL--TEHRT-A  112 (258)
T ss_dssp             CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCC-H
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcCch-h
Confidence            445678889999999999999999999999998877       7999999999999999999999999999  78887 2


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375          232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS  311 (444)
Q Consensus       232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~  311 (444)
                      ..+        ...|++++|+..+++++... |.    ...++..+|.++...           |++++|+..|++++ .
T Consensus       113 ~~~--------~~~~~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~a~-~  167 (258)
T 3uq3_A          113 DIL--------TKLRNAEKELKKAEAEAYVN-PE----KAEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-K  167 (258)
T ss_dssp             HHH--------HHHHHHHHHHHHHHHHHHCC-HH----HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred             HHH--------HHHhHHHHHHHHHHHHHHcC-cc----hHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-h
Confidence            222        23467899999999999943 22    357889999998764           67999999999999 9


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCC
Q 013375          312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT------GKW  385 (444)
Q Consensus       312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~------P~~  385 (444)
                      .+|+++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+++++++..      |  
T Consensus       168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p--  244 (258)
T 3uq3_A          168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--  244 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCC--
Confidence            999999999999999999999999999999999999999 5999999999999999999999999999999      8  


Q ss_pred             CcHHHHHHHHHH
Q 013375          386 EQGELLRTKAKV  397 (444)
Q Consensus       386 ~~~~~~~~la~~  397 (444)
                      ++..++..++.+
T Consensus       245 ~~~~~~~~l~~~  256 (258)
T 3uq3_A          245 SAREIDQLYYKA  256 (258)
T ss_dssp             THHHHHHHHHHT
T ss_pred             chHHHHHHHHHh
Confidence            888888777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=4.9e-26  Score=207.73  Aligned_cols=168  Identities=20%  Similarity=0.133  Sum_probs=127.1

Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC-----------CCchHHHHHHHHhhc
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA-----------GEDLVALNLLRTLLS  223 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-----------g~~~~A~~~~~~al~  223 (444)
                      ..+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+++|.++...           |++++|+..|++++ 
T Consensus        33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-  111 (217)
T 2pl2_A           33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE-  111 (217)
T ss_dssp             TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH-
Confidence            345788889999999999999999999999999999999999999999999998           77777777777777 


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375          224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ  303 (444)
Q Consensus       224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~  303 (444)
                       +++|+++.+++.+                                        |.++..           .|++++|+.
T Consensus       112 -~~~P~~~~~~~~l----------------------------------------g~~~~~-----------~g~~~~A~~  139 (217)
T 2pl2_A          112 -RVNPRYAPLHLQR----------------------------------------GLVYAL-----------LGERDKAEA  139 (217)
T ss_dssp             -HHCTTCHHHHHHH----------------------------------------HHHHHH-----------TTCHHHHHH
T ss_pred             -HhCcccHHHHHHH----------------------------------------HHHHHH-----------cCChHHHHH
Confidence             6677666555544                                        444332           245778888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      .|++++ +++ +++.+++++|.++..+|++++|+..|+++++++|++ ..++..+|.++..+|++++|+..|+++
T Consensus       140 ~~~~al-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          140 SLKQAL-ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHH-HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC--------------
T ss_pred             HHHHHH-hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            888888 888 888888888888888888888888888888888888 488888888888888888888888765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=2.3e-23  Score=213.17  Aligned_cols=345  Identities=12%  Similarity=0.025  Sum_probs=247.8

Q ss_pred             HHHHHHHHhhhhc----ccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHH----hCChHH
Q 013375           10 LEAIFLKAKCLQG----LGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKL----ADAPRE   81 (444)
Q Consensus        10 ~~~~~~~g~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~----~g~~~e   81 (444)
                      .++++..|.+|..    .+++++|+..|+++++..                     ...+...+|.+|..    .+++++
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~~   97 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYAQ   97 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHHH
Confidence            5778888888888    888888888888887531                     12466677777777    777777


Q ss_pred             HHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcC-CCC-------------C--CccccccCccccC----CCcHHHH
Q 013375           82 TIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC-------------P--PNLRSQMGSSFVP----RNNIEEA  141 (444)
Q Consensus        82 A~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~-------------~--~~~~~~~~~~~~~----~~~~~eA  141 (444)
                      |+.+|+++.+..   ++.    ....++.++..+.. ...             .  +.....++.+|..    .+++++|
T Consensus        98 A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A  170 (490)
T 2xm6_A           98 AVIWYKKAALKG---LPQ----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMA  170 (490)
T ss_dssp             HHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            777777777651   221    13445555444321 000             0  0000112222322    4567777


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----CCCchH
Q 013375          142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLV  213 (444)
Q Consensus       142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----~g~~~~  213 (444)
                      +..+..     ++.  ..++.++..+|.+|..    .+++++|+..|+++++.  +++.+++.+|.+|..    .+++++
T Consensus       171 ~~~~~~-----a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~  241 (490)
T 2xm6_A          171 REWYSK-----AAE--QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQ  241 (490)
T ss_dssp             HHHHHH-----HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHH-----HHH--CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            776522     222  3567778888888777    77888888888887764  567778888888876    777888


Q ss_pred             HHHHHHHhhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013375          214 ALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT  290 (444)
Q Consensus       214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~  290 (444)
                      |+..|++++  ..  +++.+++.++.++..   ..++.++|+.+|+++++.  .+     ..+++.+|.+|......   
T Consensus       242 A~~~~~~a~--~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~-----~~a~~~Lg~~y~~~~~g---  307 (490)
T 2xm6_A          242 SRVLFSQSA--EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN-----SDGQYYLAHLYDKGAEG---  307 (490)
T ss_dssp             HHHHHHHHH--TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC-----HHHHHHHHHHHHHCBTT---
T ss_pred             HHHHHHHHH--HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCCC---
Confidence            888888877  33  556666666666543   146777888888887763  11     35677777777542000   


Q ss_pred             hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH---
Q 013375          291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA---  364 (444)
Q Consensus       291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~---  364 (444)
                         ..+++++|+..|++++ +.  +++.+++++|.++...|   ++++|+.+|+++++.  ++ ..+++.+|.++..   
T Consensus       308 ---~~~~~~~A~~~~~~a~-~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g  378 (490)
T 2xm6_A          308 ---VAKNREQAISWYTKSA-EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE-KAAQFNLGNALLQGKG  378 (490)
T ss_dssp             ---BCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSS
T ss_pred             ---CcCCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCC
Confidence               0157899999999999 75  67889999999999877   899999999999987  55 4999999999999   


Q ss_pred             -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013375          365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       365 -~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~  418 (444)
                       .+++++|+.+|++|++.    .++.+++++|.++..    .+++++|+..|+++++..
T Consensus       379 ~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          379 VKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence             89999999999999875    467899999999998    899999999999999998

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=1.3e-23  Score=217.06  Aligned_cols=378  Identities=13%  Similarity=0.016  Sum_probs=279.1

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      .++|...+. +.+.|++++|...|+++++.+        |.+           ...+...+.++.+.|++++|+..|+++
T Consensus        13 ~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--------P~~-----------~~~w~~~~~~~~~~~~~~~a~~~~~ra   72 (530)
T 2ooe_A           13 LDAWSILIR-EAQNQPIDKARKTYERLVAQF--------PSS-----------GRFWKLYIEAEIKAKNYDKVEKLFQRC   72 (530)
T ss_dssp             HHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--------TTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--------CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            467888887 477899999999999999763        432           256777888899999999999999999


Q ss_pred             hCcCCCCChHHHHHHHHHHHHHHhhh-cCCC-------------------CCCccc--cccCccccC---------CCcH
Q 013375           90 LLPCWNLDAETTAKLQKEFAIFLLYC-GGET-------------------CPPNLR--SQMGSSFVP---------RNNI  138 (444)
Q Consensus        90 L~~~~~~~~~~~~~l~~~~a~~ll~~-~~~~-------------------~~~~~~--~~~~~~~~~---------~~~~  138 (444)
                      ++.    .|.. . +...++.+.... +...                   .+....  .....+...         +|++
T Consensus        73 l~~----~p~~-~-lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  146 (530)
T 2ooe_A           73 LMK----VLHI-D-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI  146 (530)
T ss_dssp             TTT----CCCH-H-HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred             Hhc----CCCh-H-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence            999    3321 1 222222221111 1000                   000000  000111111         4566


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCH--HHHHHHHH-----------------------------------------------
Q 013375          139 EEAILLLMILLRKVALKRIEWDP--SILDHLSF-----------------------------------------------  169 (444)
Q Consensus       139 ~eAi~~l~~~~~~~~l~~~p~~~--~~~~~lg~-----------------------------------------------  169 (444)
                      ++|...+     +.++. .|...  ..|.....                                               
T Consensus       147 ~~a~~~y-----~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          147 TAVRRVY-----QRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             HHHHHHH-----HHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             HHHHHHH-----HHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence            6776664     44555 46542  22221100                                               


Q ss_pred             ----------------HHHh------cCCH----HHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-------CCCch----
Q 013375          170 ----------------AFSI------AGDL----SSLATQIEELLPGIINRKERYHILALCYYG-------AGEDL----  212 (444)
Q Consensus       170 ----------------~l~~------~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~l~~-------~g~~~----  212 (444)
                                      +...      .++.    ..++..|++++..+|.++++|+.+|..+..       .|+++    
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~  300 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL  300 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence                            0000      0122    367789999999999999999999999987       89987    


Q ss_pred             ---HHHHHHHHhhcCC-CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh
Q 013375          213 ---VALNLLRTLLSGS-EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA  288 (444)
Q Consensus       213 ---~A~~~~~~al~~~-~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~  288 (444)
                         +|+.+|++++  . ..|+++.++...+.+. ...|++++|...|+++++. +|...   ..+|..+|.++..     
T Consensus       301 ~~~~A~~~~~~Al--~~~~p~~~~l~~~~~~~~-~~~g~~~~A~~~~~~al~~-~p~~~---~~~~~~~~~~~~~-----  368 (530)
T 2ooe_A          301 FSDEAANIYERAI--STLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAI-EDIDP---TLVYIQYMKFARR-----  368 (530)
T ss_dssp             HHHHHHHHHHHHT--TTTCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHS-SSSCH---HHHHHHHHHHHHH-----
T ss_pred             hhHHHHHHHHHHH--HHhCcccHHHHHHHHHHH-HhcCCHHHHHHHHHHHhCc-cccCc---hHHHHHHHHHHHH-----
Confidence               9999999999  7 7999999998887765 4468999999999999994 44321   2578888877654     


Q ss_pred             hchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375          289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR  367 (444)
Q Consensus       289 ~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~  367 (444)
                            .|++++|++.|++++ +..|.++..+...+.+ +...|++++|...|+++++.+|++ ..+|..++.++...|+
T Consensus       369 ------~~~~~~A~~~~~~Al-~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-~~~~~~~~~~~~~~g~  440 (530)
T 2ooe_A          369 ------AEGIKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNE  440 (530)
T ss_dssp             ------HHHHHHHHHHHHHHH-TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTTTC
T ss_pred             ------hcCHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhCCC
Confidence                  467899999999999 9999998888877766 346999999999999999999999 5999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch--hhhccCCCCC
Q 013375          368 YEDAETILNAALDQTGKWEQ----GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF--YKVCLSPSCP  441 (444)
Q Consensus       368 ~~eA~~~~~~al~~~P~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~--~~~~~~~~~~  441 (444)
                      +++|..+|++++...|  .+    ..+|..........|+.+.+...++++++..|+..+......|+  +++.+.-+|.
T Consensus       441 ~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~  518 (530)
T 2ooe_A          441 DNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCS  518 (530)
T ss_dssp             HHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGTCBTTBCSSC
T ss_pred             HhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhccCchHHHHHHHHHhcccCCCC
Confidence            9999999999999876  44    34888888899999999999999999999999766544444444  7777776673

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=2.5e-25  Score=212.64  Aligned_cols=257  Identities=16%  Similarity=0.037  Sum_probs=217.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV  213 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~-~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~  213 (444)
                      .|++++|+..+     +.+....|++ .++...++.+|...|+++.|+..++..   +|.+..++..++..+...|++++
T Consensus        12 ~g~y~~ai~~~-----~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A           12 IGSYQQCINEA-----QRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             TTCHHHHHHHH-----HHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHH-----HhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHH
Confidence            67899999864     3334455655 357788999999999999999988763   67788899999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHH
Q 013375          214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD  293 (444)
Q Consensus       214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~  293 (444)
                      |+..+++.+....+|+++.+++.+|.++. ..|++++|+..+++     |++     ..++..+|.++..+         
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~-----~~~-----~~~~~~l~~~~~~~---------  143 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ-----GDS-----LECMAMTVQILLKL---------  143 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT-----CCS-----HHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC-----CCC-----HHHHHHHHHHHHHC---------
Confidence            99999999831247999999988887765 57999999999987     332     56889999998765         


Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                        |++++|++.|++++ +.+|++.......|++  +...|++++|+..|+++++.+|++ ..+|+++|.++..+|++++|
T Consensus       144 --g~~~~A~~~l~~~~-~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA  219 (291)
T 3mkr_A          144 --DRLDLARKELKKMQ-DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-LLLLNGQAACHMAQGRWEAA  219 (291)
T ss_dssp             --TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred             --CCHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHH
Confidence              67999999999999 9999987555544433  334589999999999999999999 59999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHhhhhhc
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG-AVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~~~~~~~~  425 (444)
                      +..++++++.+|  +++.+++++|.++..+|+.++ +...+++++++.|++....
T Consensus       220 ~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          220 EGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            999999999999  999999999999999999987 5688899999999987643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=3.1e-23  Score=212.23  Aligned_cols=310  Identities=13%  Similarity=0.040  Sum_probs=232.2

Q ss_pred             HHHHHHHHHHHH----hCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcC-CCC---------------CCc
Q 013375           64 RAVELLPELWKL----ADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC---------------PPN  123 (444)
Q Consensus        64 ~a~~~l~~~~~~----~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~---------------~~~  123 (444)
                      .+...+|.+|..    .+++++|+.+|+++++..   ++.    ....++.++..+.. ...               .+.
T Consensus        40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  112 (490)
T 2xm6_A           40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTP----AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ  112 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence            578888999999    999999999999999871   332    24566766665421 110               000


Q ss_pred             cccccCccccC----CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCH
Q 013375          124 LRSQMGSSFVP----RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRK  195 (444)
Q Consensus       124 ~~~~~~~~~~~----~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~  195 (444)
                      ..+.++.+|..    .+++++|+..+..     +..  +.++.++..+|.+|..    .+++++|+..|+++++.  +++
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~-----a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~  183 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRL-----AAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV  183 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHH-----HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHH-----HHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            01223334444    5677788776532     222  4577788888888877    77888888888888765  578


Q ss_pred             HHHHHHHHHHHH----CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcch
Q 013375          196 ERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQ  268 (444)
Q Consensus       196 ~~~~~la~~l~~----~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~  268 (444)
                      .+++.||.+|..    .+++++|+..|++++  .  ++++.+++.++.++..   ..+++++|+.+|+++++. . +   
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~-~---  254 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSA--T--SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G-N---  254 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T-C---
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C-C---
Confidence            888888888887    788888888888888  3  3566677777766553   256778888888888773 1 1   


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 013375          269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKML  343 (444)
Q Consensus       269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~a  343 (444)
                        ..+++.+|.+|.....       ..+++++|+..|++++ +.  +++.++++||.++...     +++++|+..|+++
T Consensus       255 --~~a~~~lg~~y~~g~~-------~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a  322 (490)
T 2xm6_A          255 --SIAQFRLGYILEQGLA-------GAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS  322 (490)
T ss_dssp             --HHHHHHHHHHHHHTTT-------SSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence              4577777877754100       0257899999999999 65  7889999999999998     9999999999999


Q ss_pred             HhhcCCCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 013375          344 LKLEGGSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLA  416 (444)
Q Consensus       344 l~l~P~~~~~~~~~la~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  416 (444)
                      ++.  ++ ..++..+|.++...|   ++++|+.+|+++++.    +++.+++++|.++..    .+++++|+..|+++++
T Consensus       323 ~~~--~~-~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  395 (490)
T 2xm6_A          323 AEQ--GD-ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE  395 (490)
T ss_dssp             HHT--TC-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             Hhc--CC-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence            876  45 489999999999866   899999999999976    467899999999999    8999999999999987


Q ss_pred             H
Q 013375          417 A  417 (444)
Q Consensus       417 l  417 (444)
                      .
T Consensus       396 ~  396 (490)
T 2xm6_A          396 Q  396 (490)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=2.7e-26  Score=226.66  Aligned_cols=315  Identities=12%  Similarity=0.011  Sum_probs=244.8

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      +.+++.+|.++...|++++|+..|+++++..        |..       .+....++..+|.++...|++++|+..|+++
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   73 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--------TED-------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   73 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccc-------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4578899999999999999999999999862        221       1123467888999999999999999999998


Q ss_pred             hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375           90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF  169 (444)
Q Consensus        90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~  169 (444)
                      +..    ...                                                      ....|....++..+|.
T Consensus        74 l~~----~~~------------------------------------------------------~~~~~~~~~~~~~la~   95 (406)
T 3sf4_A           74 LTL----ART------------------------------------------------------IGDQLGEAKASGNLGN   95 (406)
T ss_dssp             HHH----HHH------------------------------------------------------TTCHHHHHHHHHHHHH
T ss_pred             HHH----HHh------------------------------------------------------ccccHHHHHHHHHHHH
Confidence            876    100                                                      0001223456778899


Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHCCC--------------------chHHHHHHHHhhc
Q 013375          170 AFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLLS  223 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~g~--------------------~~~A~~~~~~al~  223 (444)
                      ++...|++++|+..|++++.+.|..      ..+++.+|.++...|+                    +++|+..|++++ 
T Consensus        96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al-  174 (406)
T 3sf4_A           96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL-  174 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH-
Confidence            9999999999999999998876654      4588899999999999                    999999999888 


Q ss_pred             CCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375          224 GSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRAT  296 (444)
Q Consensus       224 ~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~  296 (444)
                       .+      .|....++..+|.++. ..|++++|+.+++++++..+... ......++..+|.++...           |
T Consensus       175 -~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g  241 (406)
T 3sf4_A          175 -SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----------G  241 (406)
T ss_dssp             -HHHHHTTCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------T
T ss_pred             -HHHHhccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-----------C
Confidence             44      3333445666666654 46889999999999998654322 223345788899988764           6


Q ss_pred             hHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHc
Q 013375          297 RQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ  365 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~  365 (444)
                      ++++|+..|++++ .+.|..      +.+++++|.++...|++++|+..|++++++.+...     ..++..+|.++..+
T Consensus       242 ~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  320 (406)
T 3sf4_A          242 EFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL  320 (406)
T ss_dssp             CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            7999999999999 998877      78999999999999999999999999999876542     36889999999999


Q ss_pred             cCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013375          366 KRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYT  412 (444)
Q Consensus       366 g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~  412 (444)
                      |++++|+.+++++++..+..    ....++..+|.++..+|+...+...+.
T Consensus       321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  371 (406)
T 3sf4_A          321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM  371 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence            99999999999999885411    347789999999999998855444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=4.6e-25  Score=194.81  Aligned_cols=174  Identities=16%  Similarity=0.163  Sum_probs=142.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      ++++.+|+++|.++...|++++|++.|+++++++|+++++|+.+|.++...|++++|+..+++++  ..+|+++.++...
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~   79 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV--VLDTTSAEAYYIL   79 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCchhHHHHHHH
Confidence            35677888888888888888888888888888888888888888888888888888888888888  7778777665544


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL  317 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~  317 (444)
                      +.++                                        ..           .+++++|+..+.+++ .++|+++
T Consensus        80 ~~~~----------------------------------------~~-----------~~~~~~a~~~~~~a~-~~~~~~~  107 (184)
T 3vtx_A           80 GSAN----------------------------------------FM-----------IDEKQAAIDALQRAI-ALNTVYA  107 (184)
T ss_dssp             HHHH----------------------------------------HH-----------TTCHHHHHHHHHHHH-HHCTTCH
T ss_pred             HHHH----------------------------------------HH-----------cCCHHHHHHHHHHHH-HhCccch
Confidence            3332                                        11           235678888888888 8899999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~  388 (444)
                      .++..+|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|++|++.+|  +++
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~a  175 (184)
T 3vtx_A          108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE--KKA  175 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH--HHH
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc--cCH
Confidence            999999999999999999999999999999988 48999999999999999999999999998888  553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=3.7e-25  Score=203.09  Aligned_cols=220  Identities=16%  Similarity=0.088  Sum_probs=175.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK  239 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~  239 (444)
                      .+..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++  ..+|+++.++..++.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL--ELDSSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCcchHHHHHHHH
Confidence            556788999999999999999999999999999999999999999999999999999999999  899999999888887


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013375          240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI  319 (444)
Q Consensus       240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a  319 (444)
                      ++.. .|++++|+.+++++++..|.+     ..++..+|.++...           |++++|+..|++++ +.+|+++.+
T Consensus       100 ~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~  161 (243)
T 2q7f_A          100 VYVV-KEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVKL-----------EQPKLALPYLQRAV-ELNENDTEA  161 (243)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHTCCS-----HHHHHHHHHHHHHT-----------SCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred             HHHH-hccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCccHHH
Confidence            7654 689999999999999965543     45788888888654           57899999999999 999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      ++.+|.++...|++++|+..+++++..+|++ ..+|..+|.++..+|++++|+.+++++++.+|  ++..++..++.+..
T Consensus       162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDKAIDIQP--DHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT--TCHHHHHHHTC---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHccCc--chHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 59999999999999999999999999999999  88888888877765


Q ss_pred             HhC
Q 013375          400 VQG  402 (444)
Q Consensus       400 ~~g  402 (444)
                      ..|
T Consensus       239 ~~~  241 (243)
T 2q7f_A          239 HHH  241 (243)
T ss_dssp             ---
T ss_pred             hcc
Confidence            544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.93  E-value=4e-25  Score=206.76  Aligned_cols=250  Identities=10%  Similarity=-0.034  Sum_probs=209.5

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKR----IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY  205 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~----~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l  205 (444)
                      ......+++++|+..+     +.++..    .|.++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++
T Consensus        13 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~   87 (275)
T 1xnf_A           13 VPLQPTLQQEVILARM-----EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL   87 (275)
T ss_dssp             CCCCCCHHHHHHHHHH-----HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             eccCccchHHHHHHHH-----HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            3556678999999986     444554    3567789999999999999999999999999999999999999999999


Q ss_pred             HHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013375          206 YGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS  285 (444)
Q Consensus       206 ~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~  285 (444)
                      ...|++++|+..|++++  ..+|+++.++..+|.++.. .|++++|+.+++++++..|.+.     .....++.++    
T Consensus        88 ~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~----  155 (275)
T 1xnf_A           88 TQAGNFDAAYEAFDSVL--ELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDP-----FRSLWLYLAE----  155 (275)
T ss_dssp             HHTTCHHHHHHHHHHHH--HHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHH----
T ss_pred             HHccCHHHHHHHHHHHH--hcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHH----
Confidence            99999999999999999  8999999999988887654 7999999999999999765442     2233333332    


Q ss_pred             hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHH
Q 013375          286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARIL  362 (444)
Q Consensus       286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l  362 (444)
                              ..|++++|+..|++++ ...|++...+. ++.++...++.++|+..+++++..+|+..   ..+|..+|.++
T Consensus       156 --------~~~~~~~A~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~  225 (275)
T 1xnf_A          156 --------QKLDEKQAKEVLKQHF-EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY  225 (275)
T ss_dssp             --------HHHCHHHHHHHHHHHH-HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             --------HhcCHHHHHHHHHHHH-hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence                    2468999999999999 99999977765 77778888999999999999999888530   38899999999


Q ss_pred             HHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375          363 SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       363 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      ..+|++++|+.+|++++..+|  ++..   ..+.++..+|++++|++.|
T Consensus       226 ~~~g~~~~A~~~~~~al~~~p--~~~~---~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          226 LSLGDLDSATALFKLAVANNV--HNFV---EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCC--TTCH---HHHHHHHHHHHHHHC----
T ss_pred             HHcCCHHHHHHHHHHHHhCCc--hhHH---HHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999  6644   3477888999999999988

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.93  E-value=5.8e-25  Score=224.45  Aligned_cols=222  Identities=13%  Similarity=0.071  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375          138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~  216 (444)
                      +++++..+     +......|.++.++..+|.++...|++ ++|+..|+++++++|+++++|+.+|.+|...|++++|+.
T Consensus        84 ~~~al~~l-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  158 (474)
T 4abn_A           84 MEKTLQQM-----EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT  158 (474)
T ss_dssp             HHHHHHHH-----HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHH-----HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            44555443     345577788999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHH
Q 013375          217 LLRTLLSGSEDPKCLPALLIASKICGEYP-DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA  295 (444)
Q Consensus       217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~-~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~  295 (444)
                      .|++++  .++|+ ..++..+|.++.... +..                                           ..+.
T Consensus       159 ~~~~al--~~~p~-~~~~~~lg~~~~~~~~~~~-------------------------------------------~~~~  192 (474)
T 4abn_A          159 CFSGAL--THCKN-KVSLQNLSMVLRQLQTDSG-------------------------------------------DEHS  192 (474)
T ss_dssp             HHHHHH--TTCCC-HHHHHHHHHHHTTCCCSCH-------------------------------------------HHHH
T ss_pred             HHHHHH--hhCCC-HHHHHHHHHHHHHhccCCh-------------------------------------------hhhh
Confidence            999999  88998 577776666553311 100                                           0124


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKMLLKLEG---GSNLKGWLLMARILSA  364 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~P---~~~~~~~~~la~~l~~  364 (444)
                      |++++|+..|++++ +++|+++.+|+++|.++...        |++++|+..|+++++++|   ++ ..+|.++|.++..
T Consensus       193 g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~lg~~~~~  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAV-QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN-PDLHLNRATLHKY  270 (474)
T ss_dssp             HHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC-HHHHHHHHHHHHH
Confidence            67899999999999 99999999999999999999        999999999999999999   88 5999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      +|++++|+.+|+++++++|  ++..++..++.++..+|++++|+..+.++
T Consensus       271 ~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999  89999999999999999999999988665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.93  E-value=6.9e-26  Score=225.15  Aligned_cols=291  Identities=13%  Similarity=-0.011  Sum_probs=216.8

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013375           63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI  142 (444)
Q Consensus        63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi  142 (444)
                      ...+..+|..+...|++++|+..|+++++.    +|.+...                                       
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~---------------------------------------   84 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRT---------------------------------------   84 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH---------------------------------------
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhH---------------------------------------
Confidence            345566778888888888888888888877    3321100                                       


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375          143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~  216 (444)
                                       ...++..+|.++...|++++|+..|++++.+      .|....+++.+|.++...|++++|+.
T Consensus        85 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  147 (411)
T 4a1s_A           85 -----------------LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI  147 (411)
T ss_dssp             -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                             0124556677777777777777777777666      46666777777777777777777777


Q ss_pred             HHHHhhcCCC------CCCChHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHcCC-CcchhhhH
Q 013375          217 LLRTLLSGSE------DPKCLPALLIASKICGEYPDL-----------------AEEGATFASRALECLGD-GCDQMEST  272 (444)
Q Consensus       217 ~~~~al~~~~------~P~~~~a~~~~~~~~~~~~~~-----------------~~eA~~~~~~al~~~~~-~~~~~~~~  272 (444)
                      .|++++  .+      .|....++..+|.++.. .|+                 +++|+.+++++++..+. ........
T Consensus       148 ~~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~  224 (411)
T 4a1s_A          148 CCERHL--TLARQLGDRLSEGRALYNLGNVYHA-KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR  224 (411)
T ss_dssp             HHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHH--HHHHHhhchHHHHHHHHHHHHHHHH-cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            777777  45      34444555555555433 456                 77777777777765321 11123456


Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLKL  346 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l  346 (444)
                      ++..+|.++...           |++++|+..|++++ ++.|.+..      +++++|.++...|++++|+..|++++++
T Consensus       225 ~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          225 ACGNLGNTYYLL-----------GDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-----------CChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            888899988765           67999999999999 98886554      8999999999999999999999999999


Q ss_pred             cCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          347 EGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       347 ~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      .|+..     ..++..+|.++..+|++++|+.+++++++..++.    ....+++.+|.++..+|++++|+..|++++++
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            88531     3788999999999999999999999999886511    12568999999999999999999999999999


Q ss_pred             HHhhhhhccCc
Q 013375          418 LQVQTKTFSSD  428 (444)
Q Consensus       418 ~~~~~~~~~~~  428 (444)
                      .+...+..+..
T Consensus       373 ~~~~~~~~~~~  383 (411)
T 4a1s_A          373 AXXXXXXXXXX  383 (411)
T ss_dssp             CCHHHHHHHHH
T ss_pred             Hhhcccchhhh
Confidence            87766544433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=218.32  Aligned_cols=283  Identities=13%  Similarity=-0.004  Sum_probs=232.4

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013375           64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL  143 (444)
Q Consensus        64 ~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~  143 (444)
                      .++...|..+...|++++|+..|+++++.    +|.+..                                         
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~-----------------------------------------   44 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLK-----------------------------------------   44 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHH-----------------------------------------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHH-----------------------------------------
Confidence            35677888899999999999999998887    332110                                         


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHH
Q 013375          144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNL  217 (444)
Q Consensus       144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~  217 (444)
                                     ....++..+|.++...|++++|+..|++++.+      .|....+++.+|.++...|++++|+..
T Consensus        45 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  109 (406)
T 3sf4_A           45 ---------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC  109 (406)
T ss_dssp             ---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                           00235678999999999999999999999876      456688999999999999999999999


Q ss_pred             HHHhhcCCCCCCC------hHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCCC-cchhh
Q 013375          218 LRTLLSGSEDPKC------LPALLIASKICGEYPDL--------------------AEEGATFASRALECLGDG-CDQME  270 (444)
Q Consensus       218 ~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~~-~~~~~  270 (444)
                      |++++  .+.|+.      ..++..+|.++. ..|+                    +++|+.+++++++..... +....
T Consensus       110 ~~~al--~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~  186 (406)
T 3sf4_A          110 CQRHL--DISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ  186 (406)
T ss_dssp             HHHHH--HHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHH--HHHHhcccccchHHHHHHHHHHHH-HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence            99999  676653      336666666654 4678                    999999999999864321 12344


Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLL  344 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al  344 (444)
                      ..++..+|.++...           |++++|+..|++++ ++.|....      +++++|.++...|++++|+..+++++
T Consensus       187 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          187 GRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             HHHHHHHHHHHHHH-----------TBHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            56788899988764           67999999999999 88776655      89999999999999999999999999


Q ss_pred             hhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          345 KLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       345 ~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      .+.|+..     ..++..+|.++..+|++++|+.+++++++..++..    ...++..+|.++..+|++++|+..|++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9988651     26888999999999999999999999998865211    26789999999999999999999999999


Q ss_pred             HHHHhh
Q 013375          416 AALQVQ  421 (444)
Q Consensus       416 ~l~~~~  421 (444)
                      ++.+..
T Consensus       335 ~~~~~~  340 (406)
T 3sf4_A          335 EISREV  340 (406)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            997755

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.93  E-value=5.5e-25  Score=210.40  Aligned_cols=282  Identities=13%  Similarity=0.006  Sum_probs=199.4

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013375           65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL  144 (444)
Q Consensus        65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~  144 (444)
                      .+...|..+...|++++|+..|+++++.    +|.+...                                         
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~-----------------------------------------   41 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKT-----------------------------------------   41 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH-----------------------------------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHH-----------------------------------------
Confidence            4566778888999999999999999887    3322110                                         


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHHH
Q 013375          145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLL  218 (444)
Q Consensus       145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~~  218 (444)
                                     ...++..+|.++...|++++|+..|++++.+      .|....+++.+|.++...|++++|+..|
T Consensus        42 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  106 (338)
T 3ro2_A           42 ---------------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC  106 (338)
T ss_dssp             ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence                           0123445566666666666666666665554      3444556666666666666666666666


Q ss_pred             HHhhcCCCCCCCh------HHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCC-Ccchhhh
Q 013375          219 RTLLSGSEDPKCL------PALLIASKICGEYPDL--------------------AEEGATFASRALECLGD-GCDQMES  271 (444)
Q Consensus       219 ~~al~~~~~P~~~------~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~-~~~~~~~  271 (444)
                      ++++  .+.|+..      .++..++.++. ..|+                    +++|+.+++++++.... .+.....
T Consensus       107 ~~al--~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~  183 (338)
T 3ro2_A          107 QRHL--DISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG  183 (338)
T ss_dssp             HHHH--HHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHH--HHHHHhcCchHHHHHHHHHHHHHH-HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            6666  4433321      14444444432 2455                    66777777777664321 1122335


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLK  345 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~  345 (444)
                      .++..+|.++...           |++++|+..|++++ .+.|....      +++++|.++...|++++|+..+++++.
T Consensus       184 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  251 (338)
T 3ro2_A          184 RAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  251 (338)
T ss_dssp             HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6788888888664           67899999999999 88665443      899999999999999999999999999


Q ss_pred             hcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          346 LEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       346 l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      +.|+..     ..++..+|.++..+|++++|+.+++++++..|+.    ....++..+|.++..+|++++|...|+++++
T Consensus       252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            887641     2688899999999999999999999999886621    1256889999999999999999999999999


Q ss_pred             HHHhh
Q 013375          417 ALQVQ  421 (444)
Q Consensus       417 l~~~~  421 (444)
                      +.++.
T Consensus       332 ~~~~~  336 (338)
T 3ro2_A          332 ISREV  336 (338)
T ss_dssp             C----
T ss_pred             HHHhh
Confidence            98754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.93  E-value=1.7e-23  Score=196.83  Aligned_cols=239  Identities=14%  Similarity=0.068  Sum_probs=209.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----CCCchHHHHHHHHhhcCCCCCCChH
Q 013375          157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----~g~~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      .|.++.+++.+|.++...|++++|+..|+++++  |+++.+++++|.++..    .|++++|+..|++++  ..+  ++.
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~~--~~~   75 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLN--YSN   75 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTT--CHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH--HCC--CHH
Confidence            478999999999999999999999999999998  8899999999999999    999999999999999  554  788


Q ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013375          233 ALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA  309 (444)
Q Consensus       233 a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al  309 (444)
                      +++.+|.++..   ..+++++|+.+|+++++. .      ...+++.+|.+|.....       ..+++++|+..|++++
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~------~~~a~~~lg~~~~~~~~-------~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K------YAEGCASLGGIYHDGKV-------VTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHHCSS-------SCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C------CccHHHHHHHHHHcCCC-------cccCHHHHHHHHHHHH
Confidence            88888877654   168999999999999994 2      25789999999875100       0257899999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhh
Q 013375          310 RSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQ  381 (444)
Q Consensus       310 ~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~  381 (444)
                       +.+  ++.+++++|.++..    .+++++|+..|+++++.+  + ..++..+|.++..    .+++++|+.+++++++.
T Consensus       142 -~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  215 (273)
T 1ouv_A          142 -DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--D-SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  215 (273)
T ss_dssp             -HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             -hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence             876  78999999999999    999999999999999874  4 4999999999999    99999999999999988


Q ss_pred             cCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          382 TGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       382 ~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      .|    ..+++++|.++..    .+++++|+..|++++++.|+.....
T Consensus       216 ~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          216 EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            55    5789999999999    9999999999999999988766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=5.6e-24  Score=187.82  Aligned_cols=174  Identities=13%  Similarity=0.052  Sum_probs=158.8

Q ss_pred             CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhH
Q 013375          193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST  272 (444)
Q Consensus       193 ~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~  272 (444)
                      +++.+|+++|.++...|++++|+..|++++  +++|+++.++..+|.++.                              
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~------------------------------   50 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL--KADPNNVETLLKLGKTYM------------------------------   50 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH------------------------------
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH------------------------------
Confidence            578899999999999999999999999999  899998877765554432                              


Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL  352 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  352 (444)
                                .           .|++++|+..+++++ ..+|+++.++..+|.++...+++++|+..+.+++.++|++ .
T Consensus        51 ----------~-----------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~  107 (184)
T 3vtx_A           51 ----------D-----------IGLPNDAIESLKKFV-VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-A  107 (184)
T ss_dssp             ----------H-----------TTCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred             ----------H-----------CCCHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-h
Confidence                      1           245788999999999 9999999999999999999999999999999999999999 5


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .++..+|.++..+|++++|+..|+++++.+|  +++.+|+++|.++..+|++++|+..|++++++.|++..
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999  89999999999999999999999999999999997654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=1.2e-23  Score=190.29  Aligned_cols=218  Identities=17%  Similarity=0.023  Sum_probs=195.8

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      ..|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++  ..+|+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~   80 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL--SIKPDSAEINN   80 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH--HhCCCChHHHH
Confidence            4588899999999999999999999999999999999999999999999999999999999999999  89999999998


Q ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          236 IASKICGEYP-DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       236 ~~~~~~~~~~-~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      .++.++. .. |++++|+.+++++++ .+..+  ....+++.+|.++...           |++++|+..|++++ +.+|
T Consensus        81 ~l~~~~~-~~~~~~~~A~~~~~~~~~-~~~~~--~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~  144 (225)
T 2vq2_A           81 NYGWFLC-GRLNRPAESMAYFDKALA-DPTYP--TPYIANLNKGICSAKQ-----------GQFGLAEAYLKRSL-AAQP  144 (225)
T ss_dssp             HHHHHHH-TTTCCHHHHHHHHHHHHT-STTCS--CHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHST
T ss_pred             HHHHHHH-HhcCcHHHHHHHHHHHHc-CcCCc--chHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCC
Confidence            8887754 57 899999999999998 33222  1356788899988664           67899999999999 9999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      +++.+++.+|.++...|++++|+..++++++++| ++ ...+..++.++...|++++|..+++.++...|  ++..+...
T Consensus       145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~  221 (225)
T 2vq2_A          145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQANFP--YSEELQTV  221 (225)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence            9999999999999999999999999999999999 87 58999999999999999999999999999999  78776654


Q ss_pred             H
Q 013375          394 K  394 (444)
Q Consensus       394 l  394 (444)
                      +
T Consensus       222 l  222 (225)
T 2vq2_A          222 L  222 (225)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=8.1e-24  Score=195.81  Aligned_cols=216  Identities=14%  Similarity=0.024  Sum_probs=168.6

Q ss_pred             hCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          156 RIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       156 ~~p~~-~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      .+|.+ +.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++  ..+|+++.++
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~  108 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL--ASDSRNARVL  108 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCcHHHH
Confidence            34554 77889999999999999999999999999999999999999999999999999999999999  8899988888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      ..++.++.. .|++++|+.+++++++ .+..+  ....++..+|.++...           |++++|+..|++++ +.+|
T Consensus       109 ~~la~~~~~-~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~  172 (252)
T 2ho1_A          109 NNYGGFLYE-QKRYEEAYQRLLEASQ-DTLYP--ERSRVFENLGLVSLQM-----------KKPAQAKEYFEKSL-RLNR  172 (252)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHTT-CTTCT--THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCS
T ss_pred             HHHHHHHHH-HhHHHHHHHHHHHHHh-CccCc--ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCc
Confidence            777766543 6777888888887776 21111  1245667777776543           46777777777777 7777


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                      +++.+++.+|.++...|++++|+..++++++.+|++ ..++..++.++...|++++|+.+++++++..|  ++..++.
T Consensus       173 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~  247 (252)
T 2ho1_A          173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP--GSLEYQE  247 (252)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CCHHHHH
Confidence            777777777777777777777777777777777777 47777777777777777777777777777777  6665544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.92  E-value=3.5e-24  Score=228.15  Aligned_cols=176  Identities=14%  Similarity=0.043  Sum_probs=104.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013375          191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME  270 (444)
Q Consensus       191 ~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~  270 (444)
                      .|+++++|++||.+|..+|++++|+..|++++  +++|++..+++.+|.+                              
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl--~l~P~~~~a~~nLg~~------------------------------   52 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASV------------------------------   52 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHH------------------------------
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHH------------------------------
Confidence            45566666666666666666666666666666  5566555444433332                              


Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                                |..           .|++++|++.|++++ +++|+++.+++++|.++..+|++++|++.|++|++++|++
T Consensus        53 ----------l~~-----------~g~~~eA~~~~~~Al-~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           53 ----------LQQ-----------QGKLQEALMHYKEAI-RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             ----------HHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ----------HHH-----------cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                      211           134555666666666 6666666666666666666666666666666666666665


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                       ..+|.++|.++..+|++++|+..|++|++++|  ++..++.++|.++..+|++++|.+.|++++++.+++.+
T Consensus       111 -~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~  180 (723)
T 4gyw_A          111 -ADAHSNLASIHKDSGNIPEAIASYRTALKLKP--DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE  180 (723)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHh
Confidence             36666666666666666666666666666666  56666666666666666666666666666666665544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.92  E-value=1.2e-23  Score=192.97  Aligned_cols=208  Identities=12%  Similarity=0.053  Sum_probs=174.5

Q ss_pred             CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013375          194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA  273 (444)
Q Consensus       194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a  273 (444)
                      .+.+|+.+|.++...|++++|+..|++++  ..+|+++.++..++.++. ..|++++|+..++++++..|.+     ..+
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~-----~~~   93 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAI--EENKEDAIPYINFANLLS-SVNELERALAFYDKALELDSSA-----ATA   93 (243)
T ss_dssp             --------------------CCTTHHHHH--TTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-----HHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcc-----hHH
Confidence            46788999999999999999999999999  899999999998887765 4789999999999999965543     568


Q ss_pred             HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH
Q 013375          274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK  353 (444)
Q Consensus       274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~  353 (444)
                      +..+|.++...           |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..++++++++|++ ..
T Consensus        94 ~~~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~  160 (243)
T 2q7f_A           94 YYGAGNVYVVK-----------EMYKEAKDMFEKAL-RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TE  160 (243)
T ss_dssp             HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HH
T ss_pred             HHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HH
Confidence            88899988764           67999999999999 9999999999999999999999999999999999999998 59


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       354 ~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ++..+|.++...|++++|+.+++++++..|  ++..+++.+|.++...|++++|+..|++++++.|+....
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  229 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA  229 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence            999999999999999999999999999999  899999999999999999999999999999999877654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=2.9e-23  Score=192.07  Aligned_cols=213  Identities=19%  Similarity=0.106  Sum_probs=195.0

Q ss_pred             CCCCCC-HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc
Q 013375          189 PGIINR-KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD  267 (444)
Q Consensus       189 ~~~p~~-~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~  267 (444)
                      ..+|.+ +.+|+.+|.++...|++++|+..|++++  ..+|+++.++..++.++.. .|++++|+..++++++..|.+  
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~--  104 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRN--  104 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC--
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCc--
Confidence            446666 8899999999999999999999999999  8999999999988877654 789999999999999975543  


Q ss_pred             hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375          268 QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK  345 (444)
Q Consensus       268 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  345 (444)
                         ..++..+|.++...           |++++|+..|++++ .  .+|.++.+++.+|.++...|++++|+..|+++++
T Consensus       105 ---~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          105 ---ARVLNNYGGFLYEQ-----------KRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             ---HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHH-----------hHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence               56888999988764           67999999999999 9  8999999999999999999999999999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ++|++ ..++..+|.++..+|++++|+.+++++++..|  ++..++..++.++...|++++|...+++++++.|+....
T Consensus       170 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          170 LNRNQ-PSVALEMADLLYKEREYVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred             cCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence            99998 59999999999999999999999999999999  899999999999999999999999999999998876653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=4e-23  Score=198.52  Aligned_cols=216  Identities=13%  Similarity=0.027  Sum_probs=134.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375          152 VALKRIEWDPSILDHLSFAFSI-------AGDL-------SSLATQIEELLP-GIINRKERYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       152 ~~l~~~p~~~~~~~~lg~~l~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~l~~~g~~~~A~~  216 (444)
                      .++..+|.++++|..+|..+..       .|++       ++|+..|+++++ ++|++..+|+.+|.++...|++++|+.
T Consensus        41 ~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~  120 (308)
T 2ond_A           41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  120 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            3344455555555555555442       3443       555555555555 455555555555555555555555555


Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375          217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT  296 (444)
Q Consensus       217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~  296 (444)
                      +|++++  .++|+++.                                       .+|..+|.++..           .|
T Consensus       121 ~~~~al--~~~p~~~~---------------------------------------~~~~~~~~~~~~-----------~~  148 (308)
T 2ond_A          121 IYNRLL--AIEDIDPT---------------------------------------LVYIQYMKFARR-----------AE  148 (308)
T ss_dssp             HHHHHH--TSSSSCTH---------------------------------------HHHHHHHHHHHH-----------HH
T ss_pred             HHHHHH--hccccCcc---------------------------------------HHHHHHHHHHHH-----------hc
Confidence            555555  45554443                                       134444444432           24


Q ss_pred             hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      ++++|+..|++++ +.+|.++.+|...+.+... .|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|
T Consensus       149 ~~~~A~~~~~~a~-~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~  226 (308)
T 2ond_A          149 GIKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLF  226 (308)
T ss_dssp             CHHHHHHHHHHHH-TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5677777777777 7777777766655555433 577777777777777777777 477777777777777777777777


Q ss_pred             HHHHhh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          376 NAALDQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       376 ~~al~~---~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ++++..   .|+ +...+|...+..+...|++++|...+++++++.|+..
T Consensus       227 ~~al~~~~l~p~-~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          227 ERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHSSSSCGG-GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHhccCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence            777774   441 2466777777777777777777777777777777644

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=3.4e-24  Score=212.88  Aligned_cols=288  Identities=14%  Similarity=0.036  Sum_probs=230.2

Q ss_pred             HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 013375            8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYR   87 (444)
Q Consensus         8 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~   87 (444)
                      ..+..++.+|.++...|++++|+..|+++++.        .|...       .....++..+|.+|...|++++|+..|+
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~  110 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA--------GTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHK  110 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--------cccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45677889999999999999999999999987        23211       1234678899999999999999999999


Q ss_pred             HHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375           88 RALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHL  167 (444)
Q Consensus        88 ~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~l  167 (444)
                      ++++.    ...                                                      ....|....++..+
T Consensus       111 ~al~~----~~~------------------------------------------------------~~~~~~~~~~~~~l  132 (411)
T 4a1s_A          111 HDLTL----AKS------------------------------------------------------MNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHH----HHH------------------------------------------------------TTCHHHHHHHHHHH
T ss_pred             HHHHH----HHH------------------------------------------------------ccCchHHHHHHHHH
Confidence            99886    100                                                      00012234567788


Q ss_pred             HHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCC-----------------chHHHHHHHHhhcC
Q 013375          168 SFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGE-----------------DLVALNLLRTLLSG  224 (444)
Q Consensus       168 g~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~-----------------~~~A~~~~~~al~~  224 (444)
                      |.++...|++++|+..|++++.+      .|....+++++|.++...|+                 +++|+..|++++  
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al--  210 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL--  210 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH--
Confidence            88999999999999999998887      66677789999999999999                 889999888887  


Q ss_pred             CCC------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhh
Q 013375          225 SED------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATR  297 (444)
Q Consensus       225 ~~~------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  297 (444)
                      .+.      |....++..+|.++. ..|++++|+.+++++++..+.. .......++..+|.++...           |+
T Consensus       211 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~  278 (411)
T 4a1s_A          211 KLMRDLGDRGAQGRACGNLGNTYY-LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL-----------GQ  278 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-----------TC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC-----------cC
Confidence            443      233446666666654 4688999999999998865432 1122345788899888765           57


Q ss_pred             HHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHcc
Q 013375          298 QAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQK  366 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g  366 (444)
                      +++|+..|++++ .+.|..      ..++..+|.++..+|++++|+.+|++++++.++..     ..++..+|.++..+|
T Consensus       279 ~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  357 (411)
T 4a1s_A          279 FEDAAEHYKRTL-ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG  357 (411)
T ss_dssp             HHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence            899999999999 988865      78899999999999999999999999999876531     258899999999999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 013375          367 RYEDAETILNAALDQTG  383 (444)
Q Consensus       367 ~~~eA~~~~~~al~~~P  383 (444)
                      ++++|+.++++++++.+
T Consensus       358 ~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          358 GHERALKYAEQHLQLAX  374 (411)
T ss_dssp             CHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            99999999999999988

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.92  E-value=4e-24  Score=204.39  Aligned_cols=287  Identities=12%  Similarity=0.002  Sum_probs=224.8

Q ss_pred             HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375            9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR   88 (444)
Q Consensus         9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~   88 (444)
                      -+..++.+|.++...|++++|+..|+++++.        .|..       .+....++..+|.++...|++++|+..|++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   68 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQV--------GTED-------LKTLSAIYSQLGNAYFYLHDYAKALEYHHH   68 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------Cccc-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4568899999999999999999999999986        2321       112346788999999999999999999999


Q ss_pred             HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375           89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS  168 (444)
Q Consensus        89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg  168 (444)
                      ++..    ....                                                      ...|....++..+|
T Consensus        69 al~~----~~~~------------------------------------------------------~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           69 DLTL----ARTI------------------------------------------------------GDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHH----HHHH------------------------------------------------------TCHHHHHHHHHHHH
T ss_pred             HHHH----hhcc------------------------------------------------------cccHHHHHHHHHHH
Confidence            9886    1100                                                      00122244677888


Q ss_pred             HHHHhcCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHCCC--------------------chHHHHHHHHhh
Q 013375          169 FAFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLL  222 (444)
Q Consensus       169 ~~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~g~--------------------~~~A~~~~~~al  222 (444)
                      .++...|++++|+..|++++++.|..      ..+++.+|.++...|+                    +++|+..+++++
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            88889999999999998888775543      3488889999999999                    888888888887


Q ss_pred             cCCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHH
Q 013375          223 SGSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRA  295 (444)
Q Consensus       223 ~~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~  295 (444)
                        .+      .|....++..++.++. ..|++++|+.+++++++..+.. .......++..+|.++...           
T Consensus       171 --~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------  236 (338)
T 3ro2_A          171 --SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----------  236 (338)
T ss_dssp             --HHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------
T ss_pred             --HHHHhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----------
Confidence              44      2333445666666554 4688999999999998864331 1223355788888888664           


Q ss_pred             hhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSA  364 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~  364 (444)
                      |++++|+..|++++ .+.|..      +.++..+|.++...|++++|+..+++++++.|...     ..++..+|.++..
T Consensus       237 g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  315 (338)
T 3ro2_A          237 GEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  315 (338)
T ss_dssp             TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            67999999999999 888776      78899999999999999999999999999876531     2488899999999


Q ss_pred             ccCHHHHHHHHHHHHhhcC
Q 013375          365 QKRYEDAETILNAALDQTG  383 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~~P  383 (444)
                      +|++++|+.++++++++.+
T Consensus       316 ~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          316 LGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HTCHHHHHHHHHHHHHC--
T ss_pred             cCChHHHHHHHHHHHHHHH
Confidence            9999999999999999887

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=2.8e-24  Score=228.84  Aligned_cols=173  Identities=14%  Similarity=0.035  Sum_probs=154.1

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      ..|+++++|++||.++..+|++++|+++|+++++++|+++.+|++||.+|..+|++++|+..|++++  +++|+++.+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al--~l~P~~~~a~~   81 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS   81 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHH
Confidence            3599999999999999999999999999999999999999999999999999999999999999999  89999887776


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR  315 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~  315 (444)
                      .+|.++                                        ..           .|++++|++.|++++ +++|+
T Consensus        82 nLg~~l----------------------------------------~~-----------~g~~~~A~~~~~kAl-~l~P~  109 (723)
T 4gyw_A           82 NMGNTL----------------------------------------KE-----------MQDVQGALQCYTRAI-QINPA  109 (723)
T ss_dssp             HHHHHH----------------------------------------HH-----------TTCHHHHHHHHHHHH-HHCTT
T ss_pred             HHHHHH----------------------------------------HH-----------cCCHHHHHHHHHHHH-HhCCC
Confidence            555443                                        22           245788888899999 89999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ++.+++++|.++..+|++++|+..|++|++++|++ ..+|.++|.++..+|++++|+..+++++++.|
T Consensus       110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence            99999999999999999999999999999999998 59999999999999999999999999988876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=3e-23  Score=189.80  Aligned_cols=217  Identities=12%  Similarity=0.067  Sum_probs=177.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI  236 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~  236 (444)
                      |.+++++..+|.++...|++++|+..|++++.++| .++.+++++|.++...|++++|+..|++++  ..+|+++.++..
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~   81 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI--KKNYNLANAYIG   81 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCSHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH--HhCcchHHHHHH
Confidence            67889999999999999999999999999999999 999999999999999999999999999999  899999999988


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          237 ASKICGEYPDLAEEGATFASRALECLGDGCDQ--MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      +|.++. ..|++++|+..++++++..|.+...  ....+++.+|.++           ...|++++|++.|++++ +++|
T Consensus        82 l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~A~~~~~~al-~~~p  148 (228)
T 4i17_A           82 KSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF-----------QQAGNIEKAEENYKHAT-DVTS  148 (228)
T ss_dssp             HHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHT-TSSC
T ss_pred             HHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH-----------HHhccHHHHHHHHHHHH-hcCC
Confidence            887765 4688999999999999976554211  1124566666665           34788999999999999 8999


Q ss_pred             C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       315 ~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                      +  ++.+++++|.++...|     ...++++..+.+.+ ...+  .+......+.|++|+.+++++++++|  ++..++.
T Consensus       149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~-~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~  218 (228)
T 4i17_A          149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSN-KEKY--ASEKAKADAAFKKAVDYLGEAVTLSP--NRTEIKQ  218 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTC-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCC-HHHH--HHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHH
Confidence            9  8899999999987654     45577788887775 2444  34445667888999999999999999  8888888


Q ss_pred             HHHHHHH
Q 013375          393 TKAKVQL  399 (444)
Q Consensus       393 ~la~~~~  399 (444)
                      .++.+..
T Consensus       219 ~l~~i~~  225 (228)
T 4i17_A          219 MQDQVKA  225 (228)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            7777653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.91  E-value=5.8e-24  Score=198.85  Aligned_cols=233  Identities=15%  Similarity=0.042  Sum_probs=202.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013375          168 SFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE  243 (444)
Q Consensus       168 g~~l~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~  243 (444)
                      +..+...|++++|+..|+++++.    +|.++.+|+.+|.++...|++++|+..|++++  ..+|+++.++..+|.++. 
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~-   88 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLT-   88 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHH-
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHH-
Confidence            33455678999999999999998    45678999999999999999999999999999  899999999998888765 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375          244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL  323 (444)
Q Consensus       244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l  323 (444)
                      ..|++++|+.+|+++++..|.+     ..+++.+|.++...           |++++|+..|++++ +++|+++.....+
T Consensus        89 ~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~  151 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYG-----------GRDKLAQDDLLAFY-QDDPNDPFRSLWL  151 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCChHHHHHH
Confidence            4789999999999999976544     57899999998764           67999999999999 9999999887777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHh
Q 013375          324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQ  401 (444)
Q Consensus       324 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~--~~~~~~~~la~~~~~~  401 (444)
                      +.. ...|++++|+..+++++...|++. ..|. ++.++...+++++|+..+++++...|+.  ++..+++.+|.++..+
T Consensus       152 ~~~-~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  228 (275)
T 1xnf_A          152 YLA-EQKLDEKQAKEVLKQHFEKSDKEQ-WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL  228 (275)
T ss_dssp             HHH-HHHHCHHHHHHHHHHHHHHSCCCS-THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH-HHhcCHHHHHHHHHHHHhcCCcch-HHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence            755 666999999999999999999984 6665 7778888999999999999999887710  2278999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhh
Q 013375          402 GQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       402 g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      |++++|+..|++++++.|+...
T Consensus       229 g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          229 GDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             TCHHHHHHHHHHHHTTCCTTCH
T ss_pred             CCHHHHHHHHHHHHhCCchhHH
Confidence            9999999999999999886544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.90  E-value=2.2e-22  Score=193.37  Aligned_cols=187  Identities=7%  Similarity=-0.101  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHCCCchHHHH
Q 013375          139 EEAILLLMILLRKVALK-RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-RYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       139 ~eAi~~l~~~~~~~~l~-~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~~g~~~~A~~  216 (444)
                      ++|+..+     +.++. ..|++..+|..+|.++...|++++|.+.|+++++++|++++ +|.++|.++.+.|++++|+.
T Consensus        81 ~~A~~~~-----~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~  155 (308)
T 2ond_A           81 DEAANIY-----ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHH-----HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHH-----HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH
Confidence            7888775     55667 68999999999999999999999999999999999999997 99999999999999999999


Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375          217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT  296 (444)
Q Consensus       217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~  296 (444)
                      .|++++  +.+|.+..+++..+.+.+...|+                                                 
T Consensus       156 ~~~~a~--~~~p~~~~~~~~~a~~~~~~~~~-------------------------------------------------  184 (308)
T 2ond_A          156 IFKKAR--EDARTRHHVYVTAALMEYYCSKD-------------------------------------------------  184 (308)
T ss_dssp             HHHHHH--TSTTCCTHHHHHHHHHHHHTSCC-------------------------------------------------
T ss_pred             HHHHHH--hcCCCCHHHHHHHHHHHHHHcCC-------------------------------------------------
Confidence            999999  89998877665443332222334                                                 


Q ss_pred             hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                       +++|+..|++++ +.+|+++.+|..+|.++...|++++|+..|++++..   +|+.....|..++.++...|++++|..
T Consensus       185 -~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~  262 (308)
T 2ond_A          185 -KSVAFKIFELGL-KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             -HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             -HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             455555555555 555655556655555555556666666666666553   333113555555555555566666666


Q ss_pred             HHHHHHhhcC
Q 013375          374 ILNAALDQTG  383 (444)
Q Consensus       374 ~~~~al~~~P  383 (444)
                      +++++++..|
T Consensus       263 ~~~~a~~~~p  272 (308)
T 2ond_A          263 VEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcc
Confidence            6666665555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.90  E-value=4.1e-22  Score=180.07  Aligned_cols=214  Identities=19%  Similarity=0.121  Sum_probs=191.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375          190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM  269 (444)
Q Consensus       190 ~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~  269 (444)
                      .+|+++.+|+.+|.++...|++++|+..|++++  ..+|+++.++..++.++. ..|++++|+.+++++++..|.+    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~----   75 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDAL--KSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDS----   75 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC----
Confidence            468899999999999999999999999999999  899999999988887765 4789999999999999975543    


Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE  347 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  347 (444)
                       ..++..+|.++...          .|++++|+..|++++ +  .+|+++.+++.+|.++...|++++|+..|+++++.+
T Consensus        76 -~~~~~~l~~~~~~~----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  143 (225)
T 2vq2_A           76 -AEINNNYGWFLCGR----------LNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ  143 (225)
T ss_dssp             -HHHHHHHHHHHHTT----------TCCHHHHHHHHHHHH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             -hHHHHHHHHHHHHh----------cCcHHHHHHHHHHHH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             46788899888654          056899999999999 9  777889999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       348 P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      |++ ..+|..+|.++...|++++|+.+++++++..|. ++...+..++.++...|+.++|...++.++++.|+....
T Consensus       144 ~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  218 (225)
T 2vq2_A          144 PQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL  218 (225)
T ss_dssp             TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence            999 599999999999999999999999999999982 367788889999999999999999999999988876653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=1.4e-21  Score=183.75  Aligned_cols=206  Identities=14%  Similarity=0.067  Sum_probs=159.8

Q ss_pred             CCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----CCCchHHHHHHHHhhcCCCCCC
Q 013375          158 EWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPK  229 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----~g~~~~A~~~~~~al~~~~~P~  229 (444)
                      |.++.++..+|.++..    .|++++|+..|+++++.+  ++.+++++|.++..    .|++++|+..|++++  ..  +
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~--~  108 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC--DL--K  108 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT--T
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH--Hc--C
Confidence            4445566777777777    888888888888887764  78888888888888    888888888888888  44  4


Q ss_pred             ChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375          230 CLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV  306 (444)
Q Consensus       230 ~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~  306 (444)
                      ++.+++.+|.++..   ..+++++|+.+|+++++.. +      ..+++.+|.+|.....       ..+++++|+..|+
T Consensus       109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~------~~a~~~lg~~~~~~~~-------~~~~~~~A~~~~~  174 (273)
T 1ouv_A          109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-D------GDGCTILGSLYDAGRG-------TPKDLKKALASYD  174 (273)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-C------HHHHHHHHHHHHHTSS-------SCCCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-c------HHHHHHHHHHHHcCCC-------CCCCHHHHHHHHH
Confidence            67777777766543   1577888888888888742 1      4577788887764100       0256899999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 013375          307 SAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAA  378 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~a  378 (444)
                      +++ +.  +++.+++++|.++..    .+++++|+..|+++++.+|   ..++..+|.++..    .+++++|+.+|++|
T Consensus       175 ~a~-~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          175 KAC-DL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             HHH-HT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             HHH-HC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            999 76  568899999999999    9999999999999998865   3889999999998    89999999999999


Q ss_pred             HhhcCCCCcHHHH
Q 013375          379 LDQTGKWEQGELL  391 (444)
Q Consensus       379 l~~~P~~~~~~~~  391 (444)
                      ++..|  ++...+
T Consensus       249 ~~~~~--~~a~~~  259 (273)
T 1ouv_A          249 CKLGA--KGACDI  259 (273)
T ss_dssp             HHHTC--HHHHHH
T ss_pred             HHcCC--HHHHHH
Confidence            99988  554433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=3.5e-22  Score=203.86  Aligned_cols=226  Identities=12%  Similarity=-0.008  Sum_probs=189.3

Q ss_pred             HhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcH-HHHHHHHHHHHHHHH
Q 013375           75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNI-EEAILLLMILLRKVA  153 (444)
Q Consensus        75 ~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~eAi~~l~~~~~~~~  153 (444)
                      ..+++++|+..+++++..    +|.+.. ....++.                    .+...|++ ++|+..+     +.+
T Consensus        80 ~~~~~~~al~~l~~~~~~----~~~~a~-~~~~lg~--------------------~~~~~g~~~~~A~~~~-----~~a  129 (474)
T 4abn_A           80 VQEEMEKTLQQMEEVLGS----AQVEAQ-ALMLKGK--------------------ALNVTPDYSPEAEVLL-----SKA  129 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTT----CCCCHH-HHHHHHH--------------------HHTSSSSCCHHHHHHH-----HHH
T ss_pred             HHHHHHHHHHHHHHHhcc----CchhHH-HHHHHHH--------------------HHHhccccHHHHHHHH-----HHH
Confidence            355678889999988887    443222 2233443                    34456788 9999886     556


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC---------CCchHHHHHHHHhhcC
Q 013375          154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLLSG  224 (444)
Q Consensus       154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---------g~~~~A~~~~~~al~~  224 (444)
                      +..+|+++++|..+|.++...|++++|+.+|+++++++|+ ..+|+++|.++...         |++++|+..|++++  
T Consensus       130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al--  206 (474)
T 4abn_A          130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV--  206 (474)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH--
Confidence            7889999999999999999999999999999999999999 79999999999999         99999999999999  


Q ss_pred             CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013375          225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA  304 (444)
Q Consensus       225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~  304 (444)
                      .++|+++.++..+|.++...                             ++..|.              ..+++++|+..
T Consensus       207 ~~~p~~~~~~~~lg~~~~~~-----------------------------~~~~~~--------------~~g~~~~A~~~  243 (474)
T 4abn_A          207 QMDVLDGRSWYILGNAYLSL-----------------------------YFNTGQ--------------NPKISQQALSA  243 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH-----------------------------HHHTTC--------------CHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHH-----------------------------HHhhcc--------------ccchHHHHHHH
Confidence            89999998887776654321                             111111              02578999999


Q ss_pred             HHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          305 LVSAARSTNM---RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       305 ~~~al~~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      |++++ +++|   +++.+|+++|.++..+|++++|+..|+++++++|++ ..+|..++.++..+|++++|+..+.+.
T Consensus       244 ~~~al-~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          244 YAQAE-KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHH-HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHH-HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999 9999   999999999999999999999999999999999999 599999999999999999999876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.90  E-value=5.6e-23  Score=203.19  Aligned_cols=242  Identities=10%  Similarity=0.022  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC------
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------  230 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~------  230 (444)
                      .++.+|..+...|++++|+..|++++++      .+..+.+++++|.++...|++++|+..+++++  .+.++.      
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~  182 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY--EIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHhCccchHH
Confidence            4456999999999999999999999987      33356899999999999999999999999999  664443      


Q ss_pred             -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375          231 -LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA  308 (444)
Q Consensus       231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a  308 (444)
                       ..++..+|.++ ...|++++|+.+++++++..+.. +......+++++|.+|..+           |++++|+..|+++
T Consensus       183 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------g~~~~A~~~~~~a  250 (383)
T 3ulq_A          183 LLQCHSLFATNF-LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ-----------SQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence             34566666665 55799999999999999975432 2334567899999999765           6799999999999


Q ss_pred             HHh-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccC---HHHHHHH
Q 013375          309 ARS-----TN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKR---YEDAETI  374 (444)
Q Consensus       309 l~~-----~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~---~~eA~~~  374 (444)
                      + +     .+ |..+.+++++|.++..+|++++|+.++++++++.+     .. ...+..+|.++...|+   +++|+..
T Consensus       251 l-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~  328 (383)
T 3ulq_A          251 I-AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-LSEFEFLKSLYLSGPDEEAIQGFFDF  328 (383)
T ss_dssp             H-HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred             H-HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9 8     57 88899999999999999999999999999999853     33 2446789999999999   8888888


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +++. ...|  +...++..+|.++..+|++++|+..|++++++.++-.+
T Consensus       329 ~~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          329 LESK-MLYA--DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HHHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HHHC-cCHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8887 4445  56788999999999999999999999999999886544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=197.35  Aligned_cols=246  Identities=15%  Similarity=0.073  Sum_probs=195.1

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC-
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-  226 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~-  226 (444)
                      .+|....++..+|.++...|++++|+..|++++++        .|....+++.+|.++...|++++|+..|++++  .. 
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~   99 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL--AIR   99 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHH
Confidence            34677789999999999999999999999999984        78888999999999999999999999999999  55 


Q ss_pred             -------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-----CCCcchhhhHHHHHhhhhhhhhhhhhhchHHH
Q 013375          227 -------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL-----GDGCDQMESTANCLLGISLSAQSKVAITDFDR  294 (444)
Q Consensus       227 -------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-----~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~  294 (444)
                             +|....++..++.++ ...|++++|+.+++++++..     +.+  .....++..+|.++...          
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~----------  166 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREKVLGKDH--PDVAKQLNNLALLCQNQ----------  166 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTT----------
T ss_pred             HHHhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHc----------
Confidence                   355566777777765 55799999999999999964     221  23467888999998765          


Q ss_pred             HhhHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC---------CC-----h
Q 013375          295 ATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG---------SN-----L  352 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------~~-----~  352 (444)
                       |++++|+..|++++ .+        +|..+.+++.+|.++...|++++|+..|++++++.|+         ..     .
T Consensus       167 -~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  244 (311)
T 3nf1_A          167 -GKYEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA  244 (311)
T ss_dssp             -TCHHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred             -CCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence             57899999999999 88        7888889999999999999999999999999986543         21     1


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      ..+..++..+...+++.+|+..+.+++...|  ....++..+|.++..+|++++|+..|++++++.|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          245 EEREECKGKQKDGTSFGEYGGWYKACKVDSP--TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHC-------CCSCCCC---------CH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhcCchhhHHHHHHHHHHHhhcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            2333444455566777788889999999999  89999999999999999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.89  E-value=4.9e-22  Score=201.55  Aligned_cols=226  Identities=12%  Similarity=-0.017  Sum_probs=175.3

Q ss_pred             CCCHHHHHHHHHHHHhcCC----HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC---CchHHHHHHHHhhcCCCCCCC
Q 013375          158 EWDPSILDHLSFAFSIAGD----LSSLATQIEELLPGIINRKERYHILALCYYGAG---EDLVALNLLRTLLSGSEDPKC  230 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g---~~~~A~~~~~~al~~~~~P~~  230 (444)
                      +.++.+++.+|.++...+.    .+.+...++.+...+|.   ++++||.+|...|   ++++|+..|++++  ...|..
T Consensus       138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa--~~g~~~  212 (452)
T 3e4b_A          138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV--SRGTVT  212 (452)
T ss_dssp             HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTTCSC
T ss_pred             CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH--HCCCHH
Confidence            4567788888888888874    44555567777766655   8899999999999   8899999999999  788888


Q ss_pred             hHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375          231 LPALLIASKICGEYP----DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV  306 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~----~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~  306 (444)
                      ...++.+|.++ ...    +++++|+.+|+++.   +.+     ..+++.+|.+|....        ..+++++|+..|+
T Consensus       213 a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa---~g~-----~~a~~~Lg~~~~~~~--------~~~d~~~A~~~~~  275 (452)
T 3e4b_A          213 AQRVDSVARVL-GDATLGTPDEKTAQALLEKIA---PGY-----PASWVSLAQLLYDFP--------ELGDVEQMMKYLD  275 (452)
T ss_dssp             HHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG---GGS-----THHHHHHHHHHHHSG--------GGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc---CCC-----HHHHHHHHHHHHhCC--------CCCCHHHHHHHHH
Confidence            87767777665 333    68889999999987   332     468888888844211        1367889999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHH
Q 013375          307 SAARSTNMRDLSILYRLSLEYAEQR-----KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNA  377 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~  377 (444)
                      +++ +.  +++.++++||.+|. .|     ++++|+.+|+++.   |++ ..++++||.+|..    ..++++|+.+|++
T Consensus       276 ~Aa-~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~  347 (452)
T 3e4b_A          276 NGR-AA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-VAADYYLGQIYRRGYLGKVYPQKALDHLLT  347 (452)
T ss_dssp             HHH-HT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-HHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred             HHH-HC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence            988 54  58899999998888 55     8999999999998   787 4899999988876    3489999999999


Q ss_pred             HHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 013375          378 ALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAA  417 (444)
Q Consensus       378 al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l  417 (444)
                      |.+.    .++.+++++|.++..    ..++++|..+|+++.+.
T Consensus       348 Aa~~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          348 AARN----GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             HHTT----TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             HHhh----ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence            8863    456788889988864    45888999999888753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=4.3e-20  Score=190.69  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH-------HHHHHHHHHHHh-hCCCCHHHHH
Q 013375          250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA-------KALQALVSAARS-TNMRDLSILY  321 (444)
Q Consensus       250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-------eA~~~~~~al~~-~~P~~~~a~~  321 (444)
                      +++..|++++...|.+     ..+|+.+|..+.......    ...|+++       +|+..|++++ + ++|+++.+|+
T Consensus       256 ~a~~~y~~al~~~p~~-----~~~w~~~~~~~~~~~~~~----~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~  325 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHH-----PDIWYEAAQYLEQSSKLL----AEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYF  325 (530)
T ss_dssp             HHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH----HTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHH
T ss_pred             HHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhchhh----hhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHH
Confidence            6677888888866544     467888887765410000    0023333       7788888888 7 6788888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH-HH
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ-LV  400 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~-~~  400 (444)
                      .+|.++...|++++|...|+++++++|+++..+|..+|.++..+|++++|+.+|++|++..|  .+...+...+.+. ..
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~~~  403 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYC  403 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHHHHHHHH
Confidence            88888888888888888888888887776324777777777777777777777777777766  5555555544442 34


Q ss_pred             hCCHHHHHHHHHHHHHHHHhhh
Q 013375          401 QGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       401 ~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .|++++|...|+++++..|++.
T Consensus       404 ~~~~~~A~~~~e~al~~~p~~~  425 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKKYGDIP  425 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCChhHHHHHHHHHHHHCCCCH
Confidence            6777777777777777776543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.89  E-value=1.1e-21  Score=183.32  Aligned_cols=208  Identities=13%  Similarity=0.045  Sum_probs=157.0

Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL  231 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~  231 (444)
                      ...|.+++.++.+|..+...|++++|+..|+++++.+|++   +.+++.+|.++..+|++++|+..|++++  ..+|+++
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~p~~~   86 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI--QIYQIDP   86 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHCCCCc
Confidence            3456777777777777777777777777777777777777   7777777777777777777777777777  6666543


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375          232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS  311 (444)
Q Consensus       232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~  311 (444)
                      ..                                     ..+++.+|.++...+...   ....|++++|+..|++++ .
T Consensus        87 ~~-------------------------------------~~a~~~lg~~~~~~~~~~---~~~~~~~~~A~~~~~~~l-~  125 (261)
T 3qky_A           87 RV-------------------------------------PQAEYERAMCYYKLSPPY---ELDQTDTRKAIEAFQLFI-D  125 (261)
T ss_dssp             TH-------------------------------------HHHHHHHHHHHHHHCCCT---TSCCHHHHHHHHHHHHHH-H
T ss_pred             hh-------------------------------------HHHHHHHHHHHHHhcccc---cccchhHHHHHHHHHHHH-H
Confidence            21                                     234455555554310000   001367999999999999 9


Q ss_pred             hCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHc-------
Q 013375          312 TNMRDLSIL-----------------YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQ-------  365 (444)
Q Consensus       312 ~~P~~~~a~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~-------  365 (444)
                      .+|+++.+.                 +.+|.++...|++++|+..|+++++..|+++  ..++..+|.++..+       
T Consensus       126 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~  205 (261)
T 3qky_A          126 RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA  205 (261)
T ss_dssp             HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence            999998777                 8899999999999999999999999999952  36899999999977       


Q ss_pred             ---cCHHHHHHHHHHHHhhcCCCCcH---HHHHHHHHHHHHhCCHHHH
Q 013375          366 ---KRYEDAETILNAALDQTGKWEQG---ELLRTKAKVQLVQGQLKGA  407 (444)
Q Consensus       366 ---g~~~eA~~~~~~al~~~P~~~~~---~~~~~la~~~~~~g~~~~A  407 (444)
                         |++++|+..|+++++.+|  ++.   .+...++.+...+++++++
T Consensus       206 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          206 RQPERYRRAVELYERLLQIFP--DSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             GHHHHHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccchHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHHHHhhhh
Confidence               999999999999999999  663   5556666676666666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.89  E-value=1e-22  Score=216.76  Aligned_cols=188  Identities=9%  Similarity=-0.080  Sum_probs=120.0

Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc--------CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE  226 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~  226 (444)
                      ..+|+++.++...|   ...|++++|++.|++++        +.+|+++++|+.+|.++..+|++++|+..|++++  +.
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~  462 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA--ER  462 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh--cc
Confidence            45678888887766   77899999999999999        8889999999999999999999999999999999  78


Q ss_pred             CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375          227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV  306 (444)
Q Consensus       227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~  306 (444)
                      +|++..+++.+|.+++. .|++++|+..|+++++..|.+     ..+++++|.++...           |++++ ++.|+
T Consensus       463 ~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~-----~~~~~~lg~~~~~~-----------g~~~~-~~~~~  524 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGE-----LAPKLALAATAELA-----------GNTDE-HKFYQ  524 (681)
T ss_dssp             HCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHH-----------TCCCT-TCHHH
T ss_pred             CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------CChHH-HHHHH
Confidence            88888877766655433 455555555555555533322     23455555554432           33445 55555


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375          307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR  367 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~  367 (444)
                      +++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++...|+
T Consensus       525 ~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          525 TVW-STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHTC----
T ss_pred             HHH-HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHHHccCC
Confidence            555 5555555555555555555555555555555555555554 3555555555544444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=1e-21  Score=179.57  Aligned_cols=205  Identities=9%  Similarity=-0.006  Sum_probs=174.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375          191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP-KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM  269 (444)
Q Consensus       191 ~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P-~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~  269 (444)
                      .+.++++++++|.++...|++++|+..|++++  .++| .+..+++.+|.++ ...|++++|+.+++++++..|.     
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~-----   74 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYL--KLTNNQDSVTAYNCGVCA-DNIKKYKEAADYFDIAIKKNYN-----   74 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTCS-----
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHH--hccCCCCcHHHHHHHHHH-HHhhcHHHHHHHHHHHHHhCcc-----
Confidence            35678999999999999999999999999999  8998 8888888776654 5579999999999999995443     


Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-------SILYRLSLEYAEQRKLNAAHYYAKM  342 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~  342 (444)
                      ...+++.+|.++..+           |++++|+..|++++ +++|+++       .+++++|.++...|++++|+..|++
T Consensus        75 ~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  142 (228)
T 4i17_A           75 LANAYIGKSAAYRDM-----------KNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH  142 (228)
T ss_dssp             HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence            257899999998765           67899999999999 9999999       6799999999999999999999999


Q ss_pred             HHhhcCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          343 LLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       343 al~l~P~--~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      +++++|+  + ..+|.++|.++..+|+     ..++++..+.+  .+...  ..+......+.+++|+..|++++++.|+
T Consensus       143 al~~~p~~~~-~~~~~~l~~~~~~~~~-----~~~~~a~~~~~--~~~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          143 ATDVTSKKWK-TDALYSLGVLFYNNGA-----DVLRKATPLAS--SNKEK--YASEKAKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HTTSSCHHHH-HHHHHHHHHHHHHHHH-----HHHHHHGGGTT--TCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhcCCCccc-HHHHHHHHHHHHHHHH-----HHHHHHHhccc--CCHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999  8 5999999999977654     45677777777  44333  3455666778899999999999999998


Q ss_pred             hhhhc
Q 013375          421 QTKTF  425 (444)
Q Consensus       421 ~~~~~  425 (444)
                      +.+..
T Consensus       213 ~~~~~  217 (228)
T 4i17_A          213 RTEIK  217 (228)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.88  E-value=1.5e-21  Score=197.97  Aligned_cols=366  Identities=15%  Similarity=0.061  Sum_probs=249.4

Q ss_pred             HHHHhhhhcccchHHHHHHHHHHHHHHHhh--h-------cCCCC---CCCCccc-cHHHHHHHHHHHHHHHHHHhC---
Q 013375           14 FLKAKCLQGLGRFKEAAQSCKVILDIVESS--F-------AEGFP---ENLGADC-KLQETLNRAVELLPELWKLAD---   77 (444)
Q Consensus        14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~--~-------~~~~~---~~~~~~~-~l~~~~~~a~~~l~~~~~~~g---   77 (444)
                      ...|..+.+.|++++|++.|+++++.....  .       ..+.+   .....++ +.-+....+...+|.++...|   
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~   86 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT   86 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence            346777777888888888888876542110  0       00111   0000000 000112346667777565555   


Q ss_pred             --ChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCC---------------CccccccCccccCCCcHHH
Q 013375           78 --APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCP---------------PNLRSQMGSSFVPRNNIEE  140 (444)
Q Consensus        78 --~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~---------------~~~~~~~~~~~~~~~~~~e  140 (444)
                        ++++|+.+|+++++..   ++.    ....++.++..+......               +...+.++.+|...+.+++
T Consensus        87 ~~~~~~A~~~~~~Aa~~g---~~~----A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           87 EAEHHEAESLLKKAFANG---EGN----TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CSS----CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred             CcCHHHHHHHHHHHHHCC---CHH----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence              7789999999998862   111    134566666654321110               0001123334444443433


Q ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC----CCchH
Q 013375          141 AILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG---DLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLV  213 (444)
Q Consensus       141 Ai~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----g~~~~  213 (444)
                      ++..... +.+.+.   +.++.+++.+|.++...|   ++++|+..|+++....|..+..+++||.+|...    +++++
T Consensus       160 ~~~~a~~-~~~~a~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          160 HLDDVER-ICKAAL---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             GHHHHHH-HHHHHT---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             CHHHHHH-HHHHHH---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            3333111 123332   445669999999999999   999999999999999999999999999999776    79999


Q ss_pred             HHHHHHHhhcCCCCCCChHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhch
Q 013375          214 ALNLLRTLLSGSEDPKCLPALLIASKICG--EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD  291 (444)
Q Consensus       214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~--~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~  291 (444)
                      |+..|+++.     |+++.+++.+|.+++  ...+++++|+.+|+++++. .      ...+++.||.+|.. |...   
T Consensus       236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g------~~~A~~~Lg~~y~~-G~g~---  299 (452)
T 3e4b_A          236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D------QPRAELLLGKLYYE-GKWV---  299 (452)
T ss_dssp             HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHH-CSSS---
T ss_pred             HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHc-CCCC---
Confidence            999999965     889999999998855  5578999999999999983 2      25789999999873 2100   


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH---
Q 013375          292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA---  364 (444)
Q Consensus       292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~---  364 (444)
                         ..++++|+..|++++    |+++.++++||.+|..    .+++++|+..|+++.+  ++++ .+.++||.+|..   
T Consensus       300 ---~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~-~A~~~Lg~~y~~G~g  369 (452)
T 3e4b_A          300 ---PADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQN-SADFAIAQLFSQGKG  369 (452)
T ss_dssp             ---CCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCT-THHHHHHHHHHSCTT
T ss_pred             ---CCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChH-HHHHHHHHHHHhCCC
Confidence               127899999999885    9999999999999887    4599999999999977  4564 899999999975   


Q ss_pred             -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHh
Q 013375          365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ--GQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       365 -~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~~~  420 (444)
                       .+++++|+.+|++|.+..+    ..+...++.+...+  ++..+|....++-....+.
T Consensus       370 ~~~d~~~A~~~~~~A~~~g~----~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~  424 (452)
T 3e4b_A          370 TKPDPLNAYVFSQLAKAQDT----PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT  424 (452)
T ss_dssp             BCCCHHHHHHHHHHHHTTCC----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence             4689999999999998754    45566666664332  3555666666666555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.88  E-value=5e-21  Score=183.04  Aligned_cols=227  Identities=10%  Similarity=-0.037  Sum_probs=172.5

Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC--CchHHHHHHHHhhcCCCCCCChHHHHHHHHHH----hcC--CC
Q 013375          175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAG--EDLVALNLLRTLLSGSEDPKCLPALLIASKIC----GEY--PD  246 (444)
Q Consensus       175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g--~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~----~~~--~~  246 (444)
                      ...++|+.+++++|.++|++..+|+..|.++...|  ++++++..+.+++  ..+|++..++...+.+.    ...  .+
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L--~~nPk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA--LDNEKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH--HHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH--HHCcccHHHHHHHHHHHHHHHHhccccC
Confidence            34467888888888888888888888888888888  8888888888888  78888888887766654    221  15


Q ss_pred             CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH--HHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375          247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA--KALQALVSAARSTNMRDLSILYRLS  324 (444)
Q Consensus       247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~--eA~~~~~~al~~~~P~~~~a~~~lg  324 (444)
                      ++++++.++.++++..|.+     ..+|++.|.++...           +.++  ++++.+++++ +.||.|..+|.+.+
T Consensus       125 ~~~~EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l-----------~~~~~~~EL~~~~~~i-~~d~~N~sAW~~R~  187 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPKN-----HHVWSYRKWLVDTF-----------DLHNDAKELSFVDKVI-DTDLKNNSAWSHRF  187 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCTTCHHHHHHHHHHH-HHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------cccChHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence            6778888888888865543     46788888777554           3345  7888888888 88888888888888


Q ss_pred             HHHHHcCC------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH-HHHHHHHHHhhc---CCCCcHHHHHHH
Q 013375          325 LEYAEQRK------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQT---GKWEQGELLRTK  394 (444)
Q Consensus       325 ~~~~~~g~------~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e-A~~~~~~al~~~---P~~~~~~~~~~l  394 (444)
                      .++...++      ++++++++++++.++|++ ..+|+.++.++...|+..+ ....+.+++++.   |  .+..++..+
T Consensus       188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~al~~l  264 (306)
T 3dra_A          188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV--TSSFALETL  264 (306)
T ss_dssp             HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE--SCHHHHHHH
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC--CCHHHHHHH
Confidence            88887776      888888888888888888 4888888888888887554 445677777665   6  677888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHH-HHHhhhh
Q 013375          395 AKVQLVQGQLKGAVETYTHLLA-ALQVQTK  423 (444)
Q Consensus       395 a~~~~~~g~~~~A~~~~~~al~-l~~~~~~  423 (444)
                      +.++.+.|+.++|+++|+.+.+ +.|.+.+
T Consensus       265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~  294 (306)
T 3dra_A          265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSN  294 (306)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence            8888888888888888888876 5665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.87  E-value=1.1e-21  Score=177.64  Aligned_cols=179  Identities=17%  Similarity=0.062  Sum_probs=126.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHH----------------HHHHHHHCCCchHHHHHHHHhhc
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI----------------LALCYYGAGEDLVALNLLRTLLS  223 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~l~~~g~~~~A~~~~~~al~  223 (444)
                      +++.+...|..+...|++++|+..|+++++.+|+++++|+.                +|.++...|++++|+..|++++ 
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-   81 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-   81 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence            45566778888888888888888888888888888888888                7777777777777777777777 


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375          224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ  303 (444)
Q Consensus       224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~  303 (444)
                       .++|+++.+++.+                                        |.++..           .|++++|+.
T Consensus        82 -~~~p~~~~~~~~l----------------------------------------g~~~~~-----------~g~~~~A~~  109 (208)
T 3urz_A           82 -QKAPNNVDCLEAC----------------------------------------AEMQVC-----------RGQEKDALR  109 (208)
T ss_dssp             -HHCTTCHHHHHHH----------------------------------------HHHHHH-----------HTCHHHHHH
T ss_pred             -HHCCCCHHHHHHH----------------------------------------HHHHHH-----------cCCHHHHHH
Confidence             6677666555444                                        444432           245778888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375          304 ALVSAARSTNMRDLSILYRLSLEYAEQRK--LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~  381 (444)
                      .|++++ +++|+++.+++++|.+|...|+  ...+...|++++..+|.  ..+|+.+|.++...|+|++|+.+|++|+++
T Consensus       110 ~~~~al-~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          110 MYEKIL-QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHH-HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            888888 8888888888888888776653  45567777777654443  256777788888888888888888888888


Q ss_pred             cCCCCcHHHHHHHHHH
Q 013375          382 TGKWEQGELLRTKAKV  397 (444)
Q Consensus       382 ~P~~~~~~~~~~la~~  397 (444)
                      +|  +. .+...+..+
T Consensus       187 ~P--~~-~~~~~l~~i  199 (208)
T 3urz_A          187 FP--ST-EAQKTLDKI  199 (208)
T ss_dssp             SC--CH-HHHHHHHHH
T ss_pred             CC--CH-HHHHHHHHH
Confidence            88  43 344444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.86  E-value=1e-20  Score=186.83  Aligned_cols=242  Identities=14%  Similarity=0.056  Sum_probs=202.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC------
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------  230 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~------  230 (444)
                      .++.+|..+...|++++|+..|++++++.      |..+.+++++|.++...|++++|+..+++++  .+.++.      
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~  180 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL--DIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HHHHhCCCchhh
Confidence            56788999999999999999999999873      3357799999999999999999999999999  554432      


Q ss_pred             -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375          231 -LPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA  308 (444)
Q Consensus       231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a  308 (444)
                       ..++..+|.++ ...|++++|+.+++++++..+. .+......++.++|.+|..+           |++++|+..|+++
T Consensus       181 ~~~~~~~lg~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~~a  248 (378)
T 3q15_A          181 TIQSLFVIAGNY-DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-----------GDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence             33555666665 5579999999999999997532 22334567899999999765           6799999999999


Q ss_pred             HHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccC---HHHHHHHH
Q 013375          309 ARS-----TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKR---YEDAETIL  375 (444)
Q Consensus       309 l~~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~---~~eA~~~~  375 (444)
                      + .     .+|..+.+++++|.++..+|++++|+.++++++++.+     .. ...+..++.++...|+   +.+|+.++
T Consensus       249 l-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          249 A-KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-KELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             H-HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH-HHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             H-HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            9 9     8899999999999999999999999999999999854     33 3456778888888888   88888888


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ++. ...|  +...++..+|.++...|++++|+..|++++++.++-.+
T Consensus       327 ~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          327 EKK-NLHA--YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             HHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhC-CChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            873 3344  56778889999999999999999999999999886655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=8.8e-21  Score=177.19  Aligned_cols=205  Identities=13%  Similarity=0.025  Sum_probs=170.7

Q ss_pred             cccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---CHHHHH
Q 013375          126 SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD---PSILDHLSFAFSIAGDLSSLATQIEELLPGIIN---RKERYH  199 (444)
Q Consensus       126 ~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~---~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~  199 (444)
                      +..+..+...|++++|+..+     +.++...|++   +.+++.+|.++...|++++|+..|+++++..|+   .+.+++
T Consensus        19 ~~~a~~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           19 FERAMEFYNQGKYDRAIEYF-----KAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-----HHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHH-----HHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            45677889999999999986     5678889998   899999999999999999999999999999775   478999


Q ss_pred             HHHHHHHH--------CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          200 ILALCYYG--------AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       200 ~la~~l~~--------~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                      .+|.++..        .|++++|+..|++++  ..+|+++.+......+               .....        ...
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~~---------------~~~~~--------~~~  148 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFI--DRYPNHELVDDATQKI---------------RELRA--------KLA  148 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH--HHCTTCTTHHHHHHHH---------------HHHHH--------HHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHH--HHCcCchhHHHHHHHH---------------HHHHH--------HHH
Confidence            99999999        999999999999999  8999988765432221               11111        123


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHH
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---DLSILYRLSLEYAEQ----------RKLNAAHY  338 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~---~~~a~~~lg~~~~~~----------g~~~~A~~  338 (444)
                      ..++.+|.+|...           |++++|+..|++++ +..|+   .+.+++.+|.++..+          |++++|+.
T Consensus       149 ~~~~~la~~~~~~-----------g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~  216 (261)
T 3qky_A          149 RKQYEAARLYERR-----------ELYEAAAVTYEAVF-DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE  216 (261)
T ss_dssp             HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence            5678899988764           67999999999999 99999   567999999999977          99999999


Q ss_pred             HHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHH
Q 013375          339 YAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       339 ~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~  372 (444)
                      .|+++++..|+++  ..+...++.++...++++++.
T Consensus       217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999985  145667777777777776543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.86  E-value=3.2e-20  Score=177.44  Aligned_cols=238  Identities=13%  Similarity=0.065  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhcCCCCCCHHHHHHHHHHH----HHC---
Q 013375          138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG--DLSSLATQIEELLPGIINRKERYHILALCY----YGA---  208 (444)
Q Consensus       138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~l----~~~---  208 (444)
                      .++|+.+     .+.++..+|++..+|+..+.++...|  ++++++..+++++..+|++..+|+..+.++    ...   
T Consensus        49 s~~aL~~-----t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           49 SERALHI-----TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             SHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHH-----HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence            3577766     36778999999999999999999999  999999999999999999999999999999    777   


Q ss_pred             CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375          209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK  286 (444)
Q Consensus       209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~  286 (444)
                      +++++++..+.+++  ..+|++..++...+.+. ...+.++  +++.+++++++..+.+     ..||.+.|.++...+.
T Consensus       124 ~~~~~EL~~~~~~l--~~~pkny~aW~~R~~vl-~~l~~~~~~~EL~~~~~~i~~d~~N-----~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          124 FDPYREFDILEAML--SSDPKNHHVWSYRKWLV-DTFDLHNDAKELSFVDKVIDTDLKN-----NSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             CCTHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCTTCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHSSGG
T ss_pred             CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhcccChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence            89999999999999  89999999999887665 4467777  9999999999975544     5799999988876542


Q ss_pred             hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhc---CCCChHHHHHHHHHH
Q 013375          287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA-AHYYAKMLLKLE---GGSNLKGWLLMARIL  362 (444)
Q Consensus       287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~-A~~~~~~al~l~---P~~~~~~~~~la~~l  362 (444)
                      ..     ....++++++.+++++ .++|+|..+|++++.++...|+..+ ....+.+++.++   |.+ ..++..++.++
T Consensus       196 ~~-----~~~~~~eEl~~~~~aI-~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~  268 (306)
T 3dra_A          196 LA-----TDNTIDEELNYVKDKI-VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIY  268 (306)
T ss_dssp             GC-----CHHHHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHH
T ss_pred             cc-----hhhhHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHH
Confidence            11     0123899999999999 9999999999999999999998555 667888888887   888 49999999999


Q ss_pred             HHccCHHHHHHHHHHHHh-hcCCCCcHHHHHHHHHH
Q 013375          363 SAQKRYEDAETILNAALD-QTGKWEQGELLRTKAKV  397 (444)
Q Consensus       363 ~~~g~~~eA~~~~~~al~-~~P~~~~~~~~~~la~~  397 (444)
                      .+.|++++|+.+|+++.+ .+|  .....|..++..
T Consensus       269 ~~~~~~~~A~~~~~~l~~~~Dp--ir~~yW~~~~~~  302 (306)
T 3dra_A          269 TQQKKYNESRTVYDLLKSKYNP--IRSNFWDYQISK  302 (306)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHT
T ss_pred             HccCCHHHHHHHHHHHHhccCh--HHHHHHHHHHhh
Confidence            999999999999999997 799  899999888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.85  E-value=2e-19  Score=176.53  Aligned_cols=284  Identities=13%  Similarity=-0.021  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013375           63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI  142 (444)
Q Consensus        63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi  142 (444)
                      ..+....|.++...|++++|+..+++++...+..++..                                          
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------------   51 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS------------------------------------------   51 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH------------------------------------------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH------------------------------------------
Confidence            45666778888999999999999999988721111100                                          


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHCCCchHHHH
Q 013375          143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~g~~~~A~~  216 (444)
                                       ...++..+|.++...|++++|...+++++.+.|...      .+++++|.++...|++++|+.
T Consensus        52 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  114 (373)
T 1hz4_A           52 -----------------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE  114 (373)
T ss_dssp             -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                             011345677777778888888888888877654332      336778888888888888888


Q ss_pred             HHHHhhcCCCC--------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh
Q 013375          217 LLRTLLSGSED--------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA  288 (444)
Q Consensus       217 ~~~~al~~~~~--------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~  288 (444)
                      .|++++  .+.        |....++..++.+++ ..|++++|+.+++++++..+...+.....++..+|.++...    
T Consensus       115 ~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~----  187 (373)
T 1hz4_A          115 TQEKAF--QLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR----  187 (373)
T ss_dssp             HHHHHH--HHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH----
T ss_pred             HHHHHH--HHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc----
Confidence            888887  443        223344555565554 35788888888888888655432222346777888887654    


Q ss_pred             hchHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHH
Q 013375          289 ITDFDRATRQAKALQALVSAARSTNM--RDLSILY-----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLM  358 (444)
Q Consensus       289 ~~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~-----~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~l  358 (444)
                             |++++|+..+++++ .+.+  +++..+.     .++.++...|++++|...+++++...|..+   ...+..+
T Consensus       188 -------g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l  259 (373)
T 1hz4_A          188 -------GDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  259 (373)
T ss_dssp             -------TCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             -------CCHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence                   67899999999998 7632  3322222     244557899999999999999998877531   1367889


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          359 ARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      |.++..+|++++|+..+++++...+..    +...++..+|.++..+|++++|...|++++++.+.
T Consensus       260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~  325 (373)
T 1hz4_A          260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999775410    12357888999999999999999999999998874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=2.3e-21  Score=184.03  Aligned_cols=265  Identities=14%  Similarity=0.068  Sum_probs=164.0

Q ss_pred             HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375            9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR   88 (444)
Q Consensus         9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~   88 (444)
                      ..++++.+|.++...|++++|+..++++++..++......           +....++..+|.+|...|++++|+..|++
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-----------PDVATMLNILALVYRDQNKYKDAANLLND   94 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4678999999999999999999999999987655321111           12456888999999999999999999999


Q ss_pred             HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375           89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS  168 (444)
Q Consensus        89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg  168 (444)
                      ++..    ....                                                    .-...|....++..+|
T Consensus        95 al~~----~~~~----------------------------------------------------~~~~~~~~~~~~~~l~  118 (311)
T 3nf1_A           95 ALAI----REKT----------------------------------------------------LGKDHPAVAATLNNLA  118 (311)
T ss_dssp             HHHH----HHHH----------------------------------------------------HCTTCHHHHHHHHHHH
T ss_pred             HHHH----HHHH----------------------------------------------------hCCCChHHHHHHHHHH
Confidence            9886    1000                                                    0001122344566777


Q ss_pred             HHHHhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC--------CCCChH
Q 013375          169 FAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLP  232 (444)
Q Consensus       169 ~~l~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~--------~P~~~~  232 (444)
                      .++...|++++|+..|++++++.        |....+++++|.++...|++++|+..|++++  ..        +|....
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~  196 (311)
T 3nf1_A          119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL--EIYQTKLGPDDPNVAK  196 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHTSCTTCHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHhCCCCHHHHH
Confidence            77777777777777777777652        5556677777777777777777777777777  44        455555


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA  308 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a  308 (444)
                      ++..++.++. ..|++++|+.+++++++..+..    ........+...+......+.     ....+.+.+|+..++++
T Consensus       197 ~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~  270 (311)
T 3nf1_A          197 TKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK-----QKDGTSFGEYGGWYKAC  270 (311)
T ss_dssp             HHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------------CCSCCCC------
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhhc
Confidence            5665655543 3567777777777777642110    000011122222222211110     01223455667777777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       309 l~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      + ..+|.++.+++.+|.++..+|++++|+.+|++++++.|+
T Consensus       271 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          271 K-VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             C-CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            7 777777777777777777777777777777777777765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.85  E-value=1.3e-20  Score=165.59  Aligned_cols=170  Identities=16%  Similarity=0.071  Sum_probs=142.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375          157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI  236 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~  236 (444)
                      +|...+.+..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++  ..+| ++..+..
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~--~~~p-~~~~~~~   78 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP--LEYQ-DNSYKSL   78 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC--GGGC-CHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh--hccC-ChHHHHH
Confidence            355566788999999999999999999999999999999999999999999999999999999999  8999 7654332


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC
Q 013375          237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD  316 (444)
Q Consensus       237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~  316 (444)
                      .+.+.+.                .                                  .+...+|+..|++++ +++|++
T Consensus        79 ~~~~~~~----------------~----------------------------------~~~~~~a~~~~~~al-~~~P~~  107 (176)
T 2r5s_A           79 IAKLELH----------------Q----------------------------------QAAESPELKRLEQEL-AANPDN  107 (176)
T ss_dssp             HHHHHHH----------------H----------------------------------HHTSCHHHHHHHHHH-HHSTTC
T ss_pred             HHHHHHH----------------h----------------------------------hcccchHHHHHHHHH-HhCCCC
Confidence            2211100                0                                  011235789999999 999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      +.+++++|.++...|++++|+..|+++++++|++. ..+|.++|.++..+|++++|+..|++++.
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999852 26999999999999999999999999985

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=1.3e-20  Score=170.41  Aligned_cols=187  Identities=10%  Similarity=0.038  Sum_probs=155.8

Q ss_pred             CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013375          194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA  273 (444)
Q Consensus       194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a  273 (444)
                      +++.++..|..+...|++++|+..|++++  ..+|+++.+++..+.   .  ..                   .......
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~---~--~~-------------------~~~~~~~   56 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTI--ALNIDRTEMYYWTNV---D--KN-------------------SEISSKL   56 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHS---C--TT-------------------SHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHhhh---c--ch-------------------hhhhHHH
Confidence            57788999999999999999999999999  899999988765321   1  00                   0112334


Q ss_pred             HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH
Q 013375          274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK  353 (444)
Q Consensus       274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~  353 (444)
                      .+.+|.++...           |++++|+..|++++ +++|+++.+++++|.++...|++++|+..|+++++++|++ ..
T Consensus        57 ~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~  123 (208)
T 3urz_A           57 ATELALAYKKN-----------RNYDKAYLFYKELL-QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LA  123 (208)
T ss_dssp             HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred             HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HH
Confidence            56688888664           67999999999999 9999999999999999999999999999999999999999 59


Q ss_pred             HHHHHHHHHHHccC--HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          354 GWLLMARILSAQKR--YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       354 ~~~~la~~l~~~g~--~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      +|+++|.++..+|+  .+.+...+++++...|   ...+++++|.++...|++++|+..|++++++.|+..
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            99999999987765  4567788888875444   345788999999999999999999999999999643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=2.4e-19  Score=156.31  Aligned_cols=120  Identities=13%  Similarity=0.115  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375          298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA  377 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~  377 (444)
                      +++|+..+++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|++ ..++..+|.++...|++++|+.++++
T Consensus        58 ~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~  135 (186)
T 3as5_A           58 VDRGTELLERSL-ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKI  135 (186)
T ss_dssp             HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            445555555555 5555555555555555555555555555555555555555 35555555555555555555555555


Q ss_pred             HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       378 al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      +++..|  ++..+++.+|.++...|++++|+..|++++++.|+.
T Consensus       136 ~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          136 ALGLRP--NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            555555  555555555555555555555555555555555543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=2.1e-21  Score=166.45  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCC
Q 013375          167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD  246 (444)
Q Consensus       167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~  246 (444)
                      ||.++...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+..|++++  .++|+++.++..+|.+      
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al--~~~p~~~~a~~~lg~~------   74 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI--NVQERDPKAHRFLGLL------   74 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHH------
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHH------
Confidence            45555555555555555555555555555555555555555555555555555555  4555554444333222      


Q ss_pred             CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375          247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE  326 (444)
Q Consensus       247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~  326 (444)
                                                        +..           .|++++|+..|++++ +++|+++.+++++|.+
T Consensus        75 ----------------------------------~~~-----------~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~  108 (150)
T 4ga2_A           75 ----------------------------------YEL-----------EENTDKAVECYRRSV-ELNPTQKDLVLKIAEL  108 (150)
T ss_dssp             ----------------------------------HHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHH
T ss_pred             ----------------------------------HHH-----------cCchHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence                                              111           123455555555555 5555555555555555


Q ss_pred             HHHcCCHHHHHHH-HHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375          327 YAEQRKLNAAHYY-AKMLLKLEGGSNLKGWLLMARILSAQK  366 (444)
Q Consensus       327 ~~~~g~~~~A~~~-~~~al~l~P~~~~~~~~~la~~l~~~g  366 (444)
                      +...|++++|... +++|++++|+++ .+|..++.++..+|
T Consensus       109 ~~~~~~~~~aa~~~~~~al~l~P~~~-~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          109 LCKNDVTDGRAKYWVERAAKLFPGSP-AVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHCSSSSHHHHHHHHHHHHSTTCH-HHHHHHHHHHHTCC
T ss_pred             HHHcCChHHHHHHHHHHHHHhCcCCH-HHHHHHHHHHHHhC
Confidence            5555555544433 355555555553 55555555555544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=1.8e-19  Score=157.22  Aligned_cols=168  Identities=17%  Similarity=0.163  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      ..++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++  ..+|+++.++..+   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~---   82 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL--ADAPDNVKVATVL---   82 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHH---
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHH---
Confidence            45677788888888888888888888888888888888888888888888888888888888  6777766554433   


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                                                           |.++..           .|++++|+..|++++ ..+|+++.++
T Consensus        83 -------------------------------------a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~  113 (186)
T 3as5_A           83 -------------------------------------GLTYVQ-----------VQKYDLAVPLLIKVA-EANPINFNVR  113 (186)
T ss_dssp             -------------------------------------HHHHHH-----------HTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred             -------------------------------------HHHHHH-----------hcCHHHHHHHHHHHH-hcCcHhHHHH
Confidence                                                 333322           245788888888888 8888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      +.+|.++...|++++|+..++++++.+|++ ..++..+|.++..+|++++|+.+++++++..|
T Consensus       114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          114 FRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            888888888888999999999888888888 48888888888888889999988888888888

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=1.3e-20  Score=179.60  Aligned_cols=213  Identities=7%  Similarity=-0.038  Sum_probs=167.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC------hHHH
Q 013375          167 LSFAFSIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------LPAL  234 (444)
Q Consensus       167 lg~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~------~~a~  234 (444)
                      .|.++...|++++|+.+|++++.+.+      ..+.+|.++|.+|..+|++++|+..|++++  .+.|+.      ..++
T Consensus        43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al--~l~~~~g~~~~~a~~~  120 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRGANFK  120 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHH
Confidence            36788899999999999999998743      236799999999999999999999999999  777753      3466


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN  313 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  313 (444)
                      ..+|.++....|++++|+.+|++++++.+.... .....++..+|.++..+           |++++|+..|++++ ++.
T Consensus       121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~  188 (292)
T 1qqe_A          121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-----------GQYIEASDIYSKLI-KSS  188 (292)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHH
Confidence            667776544349999999999999997654321 22246788899988765           67999999999999 999


Q ss_pred             CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH-----HHHHHHHHH--HccCHHHHHHHHHHHH
Q 013375          314 MRDLS-------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG-----WLLMARILS--AQKRYEDAETILNAAL  379 (444)
Q Consensus       314 P~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~-----~~~la~~l~--~~g~~~eA~~~~~~al  379 (444)
                      |+++.       +++++|.++..+|++++|+..|+++++++|++. ..     +..++..+.  ..+++++|+..|++++
T Consensus       189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            98764       679999999999999999999999999999974 43     344555554  4578999999999999


Q ss_pred             hhcCCCCcHHHHHHHHH
Q 013375          380 DQTGKWEQGELLRTKAK  396 (444)
Q Consensus       380 ~~~P~~~~~~~~~~la~  396 (444)
                      .++|  .+..++...-.
T Consensus       268 ~l~~--~~~~~~~~~k~  282 (292)
T 1qqe_A          268 RLDK--WKITILNKIKE  282 (292)
T ss_dssp             CCCH--HHHHHHHHHHH
T ss_pred             ccHH--HHHHHHHHHHH
Confidence            9999  66655554433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=5e-21  Score=164.13  Aligned_cols=141  Identities=11%  Similarity=0.024  Sum_probs=116.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013375          243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR  322 (444)
Q Consensus       243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~  322 (444)
                      ...|++++|+..+++++...|.     ...+++.+|.+|...           |++++|++.|++++ +++|+++.+|++
T Consensus         8 ~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~-----------~~~~~A~~~~~~al-~~~p~~~~a~~~   70 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEA-----------KEYDLAKKYICTYI-NVQERDPKAHRF   70 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred             HHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHH
Confidence            3445555555555555542111     234566677777554           57899999999999 999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH-HHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013375          323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAALDQTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~-~~~al~~~P~~~~~~~~~~la~~~~~~  401 (444)
                      +|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|... +++|++++|  +++.++..++.++..+
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--GSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--TCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999 59999999999999999887765 599999999  8999999999999888


Q ss_pred             CC
Q 013375          402 GQ  403 (444)
Q Consensus       402 g~  403 (444)
                      |+
T Consensus       148 G~  149 (150)
T 4ga2_A          148 GE  149 (150)
T ss_dssp             CC
T ss_pred             Cc
Confidence            85

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.84  E-value=1.7e-20  Score=199.63  Aligned_cols=175  Identities=14%  Similarity=0.028  Sum_probs=154.5

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013375          133 VPRNNIEEAILLLMILLRKVAL--------KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC  204 (444)
Q Consensus       133 ~~~~~~~eAi~~l~~~~~~~~l--------~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  204 (444)
                      ...+++++|+..+     +.++        ..+|++.+++..+|.++...|++++|++.|+++++.+|+++.+|+++|.+
T Consensus       402 ~~~~~~~~A~~~~-----~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  476 (681)
T 2pzi_A          402 TVLSQPVQTLDSL-----RAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVA  476 (681)
T ss_dssp             TTTCCHHHHHHHH-----HHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             ccccCHHHHHHHH-----HHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence            4578899999876     4456        77899999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                      +..+|++++|+..|++++  +++|+++.+++.+|.++. ..|++++ +.+|+++++..|.+     ..+++++|.++...
T Consensus       477 ~~~~g~~~~A~~~~~~al--~l~P~~~~~~~~lg~~~~-~~g~~~~-~~~~~~al~~~P~~-----~~a~~~lg~~~~~~  547 (681)
T 2pzi_A          477 ELLTGDYDSATKHFTEVL--DTFPGELAPKLALAATAE-LAGNTDE-HKFYQTVWSTNDGV-----ISAAFGLARARSAE  547 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHH--HHSTTCSHHHHHHHHHHH-HHTCCCT-TCHHHHHHHHCTTC-----HHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHH-HcCChHH-HHHHHHHHHhCCch-----HHHHHHHHHHHHHc
Confidence            999999999999999999  899999999998887764 4688999 99999999965544     57899999999765


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL  333 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~  333 (444)
                                 |++++|++.|++++ +++|+++.+++++|.++...++.
T Consensus       548 -----------g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~~~~~  584 (681)
T 2pzi_A          548 -----------GDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLSGRST  584 (681)
T ss_dssp             -----------TCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-----
T ss_pred             -----------CCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHccCCC
Confidence                       67999999999999 99999999999999999887763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.84  E-value=1e-19  Score=179.72  Aligned_cols=234  Identities=10%  Similarity=-0.033  Sum_probs=187.2

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC-------CCHHHHHH
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEW---DPSILDHLSFAFSIAGDLSSLATQIEELLPGII-------NRKERYHI  200 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~---~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~  200 (444)
                      .+...|++++|+..+..++.  .....|+   ...++..+|.++...|++++|+..|++++++.+       ....++++
T Consensus       112 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAES--KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT--TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHH--HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            45567899999998743321  1122343   457999999999999999999999999998743       34568999


Q ss_pred             HHHHHHHCCCchHHHHHHHHhhcCCCCCCCh------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHH
Q 013375          201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTA  273 (444)
Q Consensus       201 la~~l~~~g~~~~A~~~~~~al~~~~~P~~~------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a  273 (444)
                      +|.++..+|++++|+..|++++  .+.|+..      .++..+|.++ ...|++++|+.++++++++...... +....+
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  266 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAY--SMAEAEKQPQLMGRTLYNIGLCK-NSQSQYEDAIPYFKRAIAVFEESNILPSLPQA  266 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            9999999999999999999999  6655432      3666676665 4579999999999999996432222 334788


Q ss_pred             HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Q 013375          274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-----NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLK  345 (444)
Q Consensus       274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~-----~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~  345 (444)
                      ++.+|.++...           |++++|+..|++++ ++     +|.....+..+|.++...|+   +++|+..+++. .
T Consensus       267 ~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~  333 (383)
T 3ulq_A          267 YFLITQIHYKL-----------GKIDKAHEYHSKGM-AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M  333 (383)
T ss_dssp             HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence            99999999765           67999999999999 88     45555556789999999999   89999999988 4


Q ss_pred             hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ..|.. ..++..+|.++..+|++++|+.+++++++...
T Consensus       334 ~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          334 LYADL-EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             CHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45555 47899999999999999999999999998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=2.5e-20  Score=177.65  Aligned_cols=218  Identities=14%  Similarity=0.004  Sum_probs=172.9

Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC------ChHHHHHHHHHHhcCCCCHH
Q 013375          176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK------CLPALLIASKICGEYPDLAE  249 (444)
Q Consensus       176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~------~~~a~~~~~~~~~~~~~~~~  249 (444)
                      ++++|+.+|+++              |.+|...|++++|+..|++++  .+.+.      ...++..+|.+ +...|+++
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~   94 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA--DYQKKAGNEDEAGNTYVEAYKC-FKSGGNSV   94 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-HHHTTCHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHH-HHHCCCHH
Confidence            599999999988              778999999999999999999  66432      24566666665 45679999


Q ss_pred             HHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHH
Q 013375          250 EGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYR  322 (444)
Q Consensus       250 eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~  322 (444)
                      +|+.+|++++++.+... ......++..+|.+|..+          .|++++|+..|++++ ++.|++      ..++.+
T Consensus        95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~----------lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~  163 (292)
T 1qqe_A           95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND----------LHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIK  163 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----------hcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHH
Confidence            99999999999764321 122356788899988652          157999999999999 998865      578999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH-----H
Q 013375          323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL-----L  391 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-----~  391 (444)
                      +|.++..+|++++|+..|+++++++|+++.      .+|.++|.++..+|++++|+.+|+++++++|  +....     +
T Consensus       164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~l  241 (292)
T 1qqe_A          164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP--NFADSRESNFL  241 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCcHHHHHH
Confidence            999999999999999999999999998741      1688999999999999999999999999999  54432     3


Q ss_pred             HHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          392 RTKAKVQL--VQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       392 ~~la~~~~--~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ..++..+.  ..+++++|+..|++++.+.|....
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~  275 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT  275 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence            34455443  467899999999999888886654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.83  E-value=1.4e-18  Score=170.45  Aligned_cols=293  Identities=15%  Similarity=0.039  Sum_probs=216.1

Q ss_pred             hHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHH
Q 013375            4 HAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETI   83 (444)
Q Consensus         4 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~   83 (444)
                      ....+..+.+..+|..+...|++++|...++++++..        |...      ......++..+|.++...|++++|+
T Consensus         8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~   73 (373)
T 1hz4_A            8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL--------PPGW------FYSRIVATSVLGEVLHCKGELTRSL   73 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTC------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCc------hhHHHHHHHHHHHHHHhcCcHHHHH
Confidence            3456677889999999999999999999999998752        2110      0113356778899999999999999


Q ss_pred             HHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013375           84 MSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI  163 (444)
Q Consensus        84 ~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~  163 (444)
                      ..|++++..    .+..                                   +...                   ....+
T Consensus        74 ~~~~~al~~----~~~~-----------------------------------~~~~-------------------~~~~~   95 (373)
T 1hz4_A           74 ALMQQTEQM----ARQH-----------------------------------DVWH-------------------YALWS   95 (373)
T ss_dssp             HHHHHHHHH----HHHT-----------------------------------TCHH-------------------HHHHH
T ss_pred             HHHHHHHHH----HHhc-----------------------------------CcHH-------------------HHHHH
Confidence            999999987    2210                                   0000                   00124


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-----
Q 013375          164 LDHLSFAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-----  230 (444)
Q Consensus       164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-----  230 (444)
                      +..+|.++...|++++|+..|++++++.        |....++.++|.++...|++++|+..+++++  ...|+.     
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~  173 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI--EVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTSCGGGG
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhhccCcHHH
Confidence            5678888888888888888888888764        4456677888999999999999999999988  565542     


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH--HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375          231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSA  308 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a  308 (444)
                      ..++..++.++. ..|++++|+.+++++++..+.........+..  .++.++.           ..|++++|...++++
T Consensus       174 ~~~~~~la~~~~-~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          174 LQCLAMLIQCSL-ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ-----------MTGDKAAAANWLRHT  241 (373)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH-----------HCCCHHHHHHHHHhC
Confidence            234555666554 46888999999999888643321111111111  1222232           247899999999999


Q ss_pred             HHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          309 ARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       309 l~~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      + ...|.+    ..++..+|.++...|++++|+..+++++...+..     ...++..+|.++..+|++++|...+++++
T Consensus       242 ~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          242 A-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             C-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             C-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9 888764    3467899999999999999999999999886542     12478889999999999999999999999


Q ss_pred             hhcC
Q 013375          380 DQTG  383 (444)
Q Consensus       380 ~~~P  383 (444)
                      ...+
T Consensus       321 ~~~~  324 (373)
T 1hz4_A          321 KLAN  324 (373)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=2.7e-19  Score=163.72  Aligned_cols=206  Identities=10%  Similarity=-0.034  Sum_probs=142.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH---H
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP---A  233 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~---a  233 (444)
                      .+.+++.+|..+...|++++|+..|+++++..|++   +++++.+|.++...|++++|+..|++++  +.+|+++.   +
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCcHHHH
Confidence            46788999999999999999999999999988876   4799999999999999999999999999  89999875   5


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375          234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN  313 (444)
Q Consensus       234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  313 (444)
                      ++.+|.++... +.     ..                ...+..++..+..           .|++++|+..|++++ +.+
T Consensus        81 ~~~~g~~~~~~-~~-----~~----------------~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~l-~~~  126 (225)
T 2yhc_A           81 MYMRGLTNMAL-DD-----SA----------------LQGFFGVDRSDRD-----------PQQARAAFSDFSKLV-RGY  126 (225)
T ss_dssp             HHHHHHHHHHH-HC-----------------------------------C-----------CHHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHHHhh-hh-----hh----------------hhhhhccchhhcC-----------cHHHHHHHHHHHHHH-HHC
Confidence            56555544321 10     00                1122333433332           357899999999999 999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HH
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG---EL  390 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~  390 (444)
                      |+++.++..+..+..                 +.+.. ......+|.++..+|++++|+..|+++++..|  +++   .+
T Consensus       127 P~~~~a~~a~~~l~~-----------------~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a  186 (225)
T 2yhc_A          127 PNSQYTTDATKRLVF-----------------LKDRL-AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--DTQATRDA  186 (225)
T ss_dssp             TTCTTHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TSHHHHHH
T ss_pred             cCChhHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--CCCccHHH
Confidence            999876643221111                 11111 23445667777777777777777777777777  443   56


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ++.+|.++.++|++++|+..++++....|+.
T Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          187 LPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            7777777777777777777777776655544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.82  E-value=1.9e-18  Score=166.25  Aligned_cols=228  Identities=13%  Similarity=0.011  Sum_probs=155.8

Q ss_pred             hcCCH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC----------chHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013375          173 IAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASKIC  241 (444)
Q Consensus       173 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~----------~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~  241 (444)
                      ..|.+ ++|+.++++++.++|++..+|+..+.++...|+          +++++..+..++  ..+|++..++...+.+.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L--~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH
Confidence            44555 367777777777777777777777777777665          567777777777  67777777777666554


Q ss_pred             hcCCC--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhh-HHHHHHHHHHHHHhhCCCCHH
Q 013375          242 GEYPD--LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATR-QAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       242 ~~~~~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~-~~eA~~~~~~al~~~~P~~~~  318 (444)
                      .. .+  .+++++.++.++++..|.+     ..||.+.|.+....           +. .+++++.+.+++ +.+|.|..
T Consensus       119 ~~-l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l-----------~~~~~eel~~~~~~I-~~~p~N~S  180 (331)
T 3dss_A          119 SR-LPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQA-----------AVAPAEELAFTDSLI-TRNFSNYS  180 (331)
T ss_dssp             HH-CSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHH-HHCSCCHH
T ss_pred             hc-cCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------CcCHHHHHHHHHHHH-HHCCCCHH
Confidence            33 34  3677777777777754443     45777777766543           23 467777888888 78888888


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----------cCHHHHHH
Q 013375          319 ILYRLSLEYAEQ--------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----------KRYEDAET  373 (444)
Q Consensus       319 a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-----------g~~~eA~~  373 (444)
                      +|.+++.++...              +.++++++++.+++.++|++ ..+|+.+..++...           +.+++++.
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~  259 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE  259 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence            888887777766              45777888888888888887 47776555555444           45777888


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKVQL---VQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +++++++..|  ++.-.+..++.+..   ..|..++....+.+++++.|.+.+
T Consensus       260 ~~~elle~~p--d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~  310 (331)
T 3dss_A          260 SCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  310 (331)
T ss_dssp             HHHHHHHHCT--TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHhhCc--ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence            8888888888  66333333322221   346677777788888877777655

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=3.9e-20  Score=172.65  Aligned_cols=208  Identities=18%  Similarity=0.117  Sum_probs=141.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC--------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-
Q 013375          192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL-  262 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-  262 (444)
                      |..+.+++.+|.++...|++++|+..|++++  .+        +|....++..+|.++ ...|++++|+.+++++++.. 
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~  116 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDAL--AIREKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIRE  116 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHTCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHcCCcchHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555  33        233333444444433 33455555555555555532 


Q ss_pred             ---CCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcC
Q 013375          263 ---GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQR  331 (444)
Q Consensus       263 ---~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~--------~P~~~~a~~~lg~~~~~~g  331 (444)
                         +++ ......++..+|.++...           |++++|+..|++++ .+        +|....++.++|.++..+|
T Consensus       117 ~~~~~~-~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g  183 (283)
T 3edt_B          117 KVLGKF-HPDVAKQLNNLALLCQNQ-----------GKAEEVEYYYRRAL-EIYATRLGPDDPNVAKTKNNLASCYLKQG  183 (283)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCC-ChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence               111 123457888899988765           57899999999999 88        7888899999999999999


Q ss_pred             CHHHHHHHHHHHHhh---------cCCCChHHHHHHHHHHHHccC------HHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013375          332 KLNAAHYYAKMLLKL---------EGGSNLKGWLLMARILSAQKR------YEDAETILNAALDQTGKWEQGELLRTKAK  396 (444)
Q Consensus       332 ~~~~A~~~~~~al~l---------~P~~~~~~~~~la~~l~~~g~------~~eA~~~~~~al~~~P~~~~~~~~~~la~  396 (444)
                      ++++|+..+++++++         +|.. ...|..++......+.      +.++...++......|  +...++..+|.
T Consensus       184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~la~  260 (283)
T 3edt_B          184 KYQDAETLYKEILTRAHEKEFGSVNGDN-KPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP--TVNTTLRSLGA  260 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSSCCSSC-CCHHHHHHHHHHTTCCCCC------------CCCCCCH--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCcchhH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence            999999999999997         4555 3788888887776554      4444444544444556  67889999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHH
Q 013375          397 VQLVQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       397 ~~~~~g~~~~A~~~~~~al~l~  418 (444)
                      ++..+|++++|+..|++++++.
T Consensus       261 ~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          261 LYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.82  E-value=2.2e-19  Score=170.77  Aligned_cols=171  Identities=13%  Similarity=0.069  Sum_probs=148.4

Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL  234 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~  234 (444)
                      ...|.+++.+..+|..+...|++++|+..|+++++.+|+++++++.+|.++...|++++|+..|++++  ..+|+.....
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~--~~~p~~~~~~  188 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP--LQDQDTRYQG  188 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC--GGGCSHHHHH
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc--hhhcchHHHH
Confidence            34599999999999999999999999999999999999999999999999999999999999999999  8899543222


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375          235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM  314 (444)
Q Consensus       235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P  314 (444)
                      + .+.+                                       .+..           .++.++|+..|++++ +.+|
T Consensus       189 ~-~~~~---------------------------------------~l~~-----------~~~~~~a~~~l~~al-~~~P  216 (287)
T 3qou_A          189 L-VAQI---------------------------------------ELLX-----------QAADTPEIQQLQQQV-AENP  216 (287)
T ss_dssp             H-HHHH---------------------------------------HHHH-----------HHTSCHHHHHHHHHH-HHCT
T ss_pred             H-HHHH---------------------------------------HHHh-----------hcccCccHHHHHHHH-hcCC
Confidence            2 1111                                       1111           134567899999999 9999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--NLKGWLLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      +++.+++++|.++...|++++|+..|+++++++|++  . .++.+++.++..+|+.++|+..|++++.
T Consensus       217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~-~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG-QTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc-hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999999999999999999987  5 8999999999999999999999999885

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.81  E-value=1.5e-19  Score=158.81  Aligned_cols=171  Identities=17%  Similarity=0.033  Sum_probs=135.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013375          191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME  270 (444)
Q Consensus       191 ~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~  270 (444)
                      +|...+.++.+|..+...|++++|+..|++++  ..+|+++.+++.+|.++.                            
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~----------------------------   51 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLL----------------------------   51 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHH----------------------------
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHH----------------------------
Confidence            45555667788888888888888888888888  778877776665554432                            


Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY-AEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~  349 (444)
                                  .           .|++++|+..|++++ ..+| ++..+..++.+. ...++..+|+..++++++++|+
T Consensus        52 ------------~-----------~g~~~~A~~~~~~a~-~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~  106 (176)
T 2r5s_A           52 ------------E-----------TKQFELAQELLATIP-LEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD  106 (176)
T ss_dssp             ------------H-----------TTCHHHHHHHHTTCC-GGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred             ------------H-----------CCCHHHHHHHHHHhh-hccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence                        2           245677888888888 8888 777766666443 2334455689999999999999


Q ss_pred             CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      + ..+|+.+|.++..+|++++|+..|+++++.+|++.+..++.++|.++..+|+.++|+..|++++..
T Consensus       107 ~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          107 N-FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            9 599999999999999999999999999999993334679999999999999999999999999864

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.81  E-value=1e-17  Score=161.08  Aligned_cols=242  Identities=11%  Similarity=-0.024  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Q 013375          139 EEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD----------LSSLATQIEELLPGIINRKERYHILALCYYGA  208 (444)
Q Consensus       139 ~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~  208 (444)
                      ++|+.+     .+.++..+|++..+|+..+.++...|+          +++++..++.++..+|.+..+|+..+.++...
T Consensus        47 ~eaL~~-----t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l  121 (331)
T 3dss_A           47 ESVLEL-----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  121 (331)
T ss_dssp             HHHHHH-----HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHH-----HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence            477776     367889999999999999999998876          68999999999999999999999999999999


Q ss_pred             CC--chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013375          209 GE--DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL-AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS  285 (444)
Q Consensus       209 g~--~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~-~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~  285 (444)
                      |+  +++++..+.+++  ..+|.|..++...+.+... .|. .++++.+++++++..|.+     ..||+++|.++....
T Consensus       122 ~~~~~~~EL~~~~k~l--~~dprNy~AW~~R~~vl~~-l~~~~~eel~~~~~~I~~~p~N-----~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          122 PEPNWARELELCARFL--EADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLH  193 (331)
T ss_dssp             SSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHHS
T ss_pred             CcccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhh
Confidence            95  899999999999  8999999999988777544 566 699999999999976554     578999998887652


Q ss_pred             hhhhchH---HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhcCCCC
Q 013375          286 KVAITDF---DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----------RKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       286 ~~~~~~~---~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~al~l~P~~~  351 (444)
                      .......   ...+.++++++.+.+++ .++|+|..+|+++..++...           +.++++++.+++++++.|++ 
T Consensus       194 ~~~~~~~~~~~~~~~~~eEle~~~~ai-~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-  271 (331)
T 3dss_A          194 PQPDSGPQGRLPENVLLKELELVQNAF-FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-  271 (331)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred             hccccccccccchHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence            1110000   01256899999999999 99999999998887776655           46899999999999999997 


Q ss_pred             hHHHHHHHHHHH---HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          352 LKGWLLMARILS---AQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       352 ~~~~~~la~~l~---~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      .-++..++.+..   ..|.+++...++.+.++++|  ....-|.-++.-
T Consensus       272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp--~r~~~y~d~~~~  318 (331)
T 3dss_A          272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--MRAAYLDDLRSK  318 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG--GGHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc--chhhHHHHHHHH
Confidence            344444443332   35788999999999999999  666666555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.81  E-value=8.4e-19  Score=166.78  Aligned_cols=169  Identities=15%  Similarity=-0.008  Sum_probs=153.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                      |++++.++.+|..+...|++++|+..|++++  ..+|+++.+++.+|.++..                            
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~----------------------------  163 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAW--QLSNQNGEIGLLLAETLIA----------------------------  163 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHH----------------------------
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHH----------------------------
Confidence            8899999999999999999999999999999  8999998887766655432                            


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                                             .|++++|+..|++++ ..+|++...+...+..+...++.++|+..|+++++++|++ 
T Consensus       164 -----------------------~g~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~-  218 (287)
T 3qou_A          164 -----------------------LNRSEDAEAVLXTIP-LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED-  218 (287)
T ss_dssp             -----------------------TTCHHHHHHHHTTSC-GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-
T ss_pred             -----------------------CCCHHHHHHHHHhCc-hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-
Confidence                                   245788888888888 8999878788888888999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375          352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ--GELLRTKAKVQLVQGQLKGAVETYTHLLAA  417 (444)
Q Consensus       352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l  417 (444)
                      ..+++++|.++...|++++|+..|+++++.+|  ++  ..++.+++.++..+|+.++|...|++++..
T Consensus       219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          219 AALATQLALQLHQVGRNEEALELLFGHLRXDL--TAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            59999999999999999999999999999999  66  899999999999999999999999999874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.81  E-value=5.7e-20  Score=157.75  Aligned_cols=121  Identities=10%  Similarity=0.113  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375          298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA  377 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~  377 (444)
                      ...+-..+++++ .++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|+|++|+.+|++
T Consensus        18 ~~~~~~~l~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           18 AINSGATLKDIN-AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-VDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             HHHTSCCTGGGC-CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHCCCCHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            344556788999 9999999999999999999999999999999999999999 59999999999999999999999999


Q ss_pred             HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       378 al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      +++++|  +++.+|+++|.++..+|++++|+..|++++++.|+..
T Consensus        96 al~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           96 AFALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999  8999999999999999999999999999999998654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.80  E-value=7.7e-19  Score=160.64  Aligned_cols=176  Identities=11%  Similarity=-0.053  Sum_probs=118.0

Q ss_pred             CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013375          194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME  270 (444)
Q Consensus       194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~  270 (444)
                      .++.++++|..++..|++++|+..|++++  ...|+++   .+++.+|.+++ ..|++++|+..|+++++..|.+..  .
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~--~   77 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPN--I   77 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTT--H
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCc--H
Confidence            57789999999999999999999999999  7888764   46666665544 357777777777777776554421  2


Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..+++.+|.++...+.                            .....+..++.++...|++++|+..|+++++..|++
T Consensus        78 ~~a~~~~g~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~  129 (225)
T 2yhc_A           78 DYVMYMRGLTNMALDD----------------------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS  129 (225)
T ss_dssp             HHHHHHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhhhh----------------------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence            3466777776654321                            111234445556666788888999999999888888


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      + .++..+..+.                 .+.+  ......+.+|.++...|++++|+..|+++++..|+..
T Consensus       130 ~-~a~~a~~~l~-----------------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          130 Q-YTTDATKRLV-----------------FLKD--RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             T-THHHHHHHHH-----------------HHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             h-hHHHHHHHHH-----------------HHHH--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            5 5554322211                 1112  2234457899999999999999999999999988754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.79  E-value=2.4e-18  Score=166.26  Aligned_cols=248  Identities=10%  Similarity=-0.051  Sum_probs=190.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      +..+++..+..++...+..++|++.++++|.++|++..+|+..+.++...| .+++++..+.+++  ..+|++..++...
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L--~~nPKny~aW~hR  129 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA--VQNLKSYQVWHHR  129 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCCCcHHHHHHH
Confidence            344455566666666777788999999999999999999999999999888 4889999999999  8899999888877


Q ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC
Q 013375          238 SKICGEYPD-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD  316 (444)
Q Consensus       238 ~~~~~~~~~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~  316 (444)
                      +.+.....+ ++++++.++.++++..|.+     ..+|.+.+.++...+......   .....++++.+++++ +.+|.|
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-----y~AW~~R~wvl~~l~~~~~~~---~~~~~eELe~~~k~I-~~dp~N  200 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKN-----YHTWAYLHWLYSHFSTLGRIS---EAQWGSELDWCNEML-RVDGRN  200 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTC-----HHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHH-HHCTTC
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccccccc---hhhHHHHHHHHHHHH-HhCCCC
Confidence            766544325 7788899999998854443     568888888876654321000   012349999999999 999999


Q ss_pred             HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH--------------------H
Q 013375          317 LSILYRLSLEYAEQRK-------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY--------------------E  369 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~--------------------~  369 (444)
                      ..+|++.+.++...++       ++++++++++++.++|++ ..+|+.+..++...|+-                    .
T Consensus       201 ~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n-~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (349)
T 3q7a_A          201 NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN-VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIE  279 (349)
T ss_dssp             HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCCcccccccccccccccccccch
Confidence            9999999999999987       799999999999999999 59999999999888774                    2


Q ss_pred             HHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHh
Q 013375          370 DAETILNAALDQT------GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL-AALQV  420 (444)
Q Consensus       370 eA~~~~~~al~~~------P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~~~  420 (444)
                      +-...+...+...      +  ....++..++.++...|+.++|+++|+.+. +..|-
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~--~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi  335 (349)
T 3q7a_A          280 TVEAFGFPMPSDPLPEDTPL--PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM  335 (349)
T ss_dssp             ------CCCCC-CCCSSCCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred             hHHHHHHHHHhcccccccCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence            3333333333322      3  577899999999999999999999999986 34443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.79  E-value=8.6e-19  Score=172.89  Aligned_cols=254  Identities=9%  Similarity=-0.002  Sum_probs=173.6

Q ss_pred             HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375           12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL   91 (444)
Q Consensus        12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~   91 (444)
                      .++.+|..+...|++++|+..|+++++.....     ++        .+....++..+|.+|...|++++|+..|++++.
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~--------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~  169 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----SD--------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD  169 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----CC--------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            56778888888888888888888888654321     11        112456777888888888888888888888887


Q ss_pred             cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375           92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF  171 (444)
Q Consensus        92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l  171 (444)
                      .    .+..                                   +.+.                  +....++..+|.++
T Consensus       170 ~----~~~~-----------------------------------~~~~------------------~~~~~~~~~lg~~y  192 (378)
T 3q15_A          170 I----YQNH-----------------------------------PLYS------------------IRTIQSLFVIAGNY  192 (378)
T ss_dssp             H----HHTS-----------------------------------TTCH------------------HHHHHHHHHHHHHH
T ss_pred             H----HHhC-----------------------------------CCch------------------hhHHHHHHHHHHHH
Confidence            6    1100                                   0000                  01234567888888


Q ss_pred             HhcCCHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC-----CCCCChHHHHHHHHH
Q 013375          172 SIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGS-----EDPKCLPALLIASKI  240 (444)
Q Consensus       172 ~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~-----~~P~~~~a~~~~~~~  240 (444)
                      ...|++++|++.|++++++.+      ....+++++|.++..+|++++|+..|++++  .     .+|..+.++..+|.+
T Consensus       193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA--KVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHhhCChhHHHHHHHHHHH
Confidence            888888888888888887532      234678888888888899999999998888  7     777777777777777


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                      +.. .|++++|+.++++++++.+.............++..+...+..        ..+.+|+..+++.  ...|+...++
T Consensus       271 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~--------~~~~~al~~~~~~--~~~~~~~~~~  339 (378)
T 3q15_A          271 LCK-AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE--------RKIHDLLSYFEKK--NLHAYIEACA  339 (378)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH--------HHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHH-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHhC--CChhHHHHHH
Confidence            654 6888889999988888754422211122334455554433210        2356777777652  3445556677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEG  348 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P  348 (444)
                      ..+|.++...|++++|+.+|++++++..
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            7778888888888888888887776643

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=8.1e-19  Score=145.72  Aligned_cols=114  Identities=12%  Similarity=-0.025  Sum_probs=105.6

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC
Q 013375          307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE  386 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~  386 (444)
                      ++. .+||+.++++.++|.++.+.|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..|+++++++|  +
T Consensus         4 r~a-~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~   79 (126)
T 4gco_A            4 RLA-YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDS--K   79 (126)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred             HHH-HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--h
Confidence            455 7999999999999999999999999999999999999999 59999999999999999999999999999999  8


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       387 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      +..+|+++|.++..+|++++|+..|++++++.|++.+.
T Consensus        80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA  117 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence            99999999999999999999999999999999987663

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=4.5e-18  Score=141.20  Aligned_cols=114  Identities=12%  Similarity=0.090  Sum_probs=107.3

Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      .+.++..+|..+...           |++++|++.|++++ +++|+++.+|+++|.++..+|++++|+..|+++++++|+
T Consensus        12 ~a~~~~~~G~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A           12 LAQEEKNKGNEYFKK-----------GDYPTAMRHYNEAV-KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            367888999998765           67999999999999 999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      + ..+|.++|.++..+|++++|+..|+++++++|  ++..++..++.++
T Consensus        80 ~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P--~~~~a~~~l~~~l  125 (126)
T 4gco_A           80 F-IKGYIRKAACLVAMREWSKAQRAYEDALQVDP--SNEEAREGVRNCL  125 (126)
T ss_dssp             C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHC
T ss_pred             h-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc--CCHHHHHHHHHhc
Confidence            9 59999999999999999999999999999999  9999999988764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.78  E-value=1.7e-19  Score=168.96  Aligned_cols=219  Identities=12%  Similarity=-0.015  Sum_probs=179.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHH-------HHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHIL-------ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      +..|..+ ..+++..|.+.|.+++.++|+.+++|..+       +.++...+++.+++..+++++  .+.|+...+++..
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~   87 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI   87 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc
Confidence            3445555 68999999999999999999999999999       899999999999999999999  9999987766531


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL  317 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~  317 (444)
                      ++++    |+.           + .+-.   .....+..++.++..           .|++++|.+.|..++ ..+|++.
T Consensus        88 ~g~y----~~~-----------~-~~v~---~r~dl~LayA~~L~~-----------~g~y~eA~~~l~~~~-~~~p~~~  136 (282)
T 4f3v_A           88 GGLY----GDI-----------T-YPVT---SPLAITMGFAACEAA-----------QGNYADAMEALEAAP-VAGSEHL  136 (282)
T ss_dssp             CTTT----CCC-----------E-EECS---SHHHHHHHHHHHHHH-----------HTCHHHHHHHHTSSC-CTTCHHH
T ss_pred             CCcc----ccc-----------c-cccC---CHhHHHHHHHHHHHH-----------CCCHHHHHHHHHHHH-hcCCchH
Confidence            2211    000           0 1111   012344555555544           467999999999999 9999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCC-cHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWE-QGELLRT  393 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~--P~~~-~~~~~~~  393 (444)
                       +++.+|.++.+.|++++|+..|++++... |.....+++++|.++..+|++++|+.+|++++...  |  . ..+++++
T Consensus       137 -~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P--~~~~da~~~  213 (282)
T 4f3v_A          137 -VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE--ACARAIAWY  213 (282)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTT--TTHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCc--cccHHHHHH
Confidence             99999999999999999999999887753 22112589999999999999999999999999654  6  4 6789999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          394 KAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       394 la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      +|.++..+|+.++|...|+++++..|+
T Consensus       214 ~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          214 LAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999997

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.78  E-value=1.3e-18  Score=162.22  Aligned_cols=233  Identities=16%  Similarity=0.050  Sum_probs=178.2

Q ss_pred             CCCcHHHHHHHHHHHHH--HHHHh-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--------CCCCHHHHHHHH
Q 013375          134 PRNNIEEAILLLMILLR--KVALK-RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILA  202 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~--~~~l~-~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la  202 (444)
                      ..|++++|+..+..++.  +.+.. ..|..+.++..+|.++...|++++|+..|++++++        +|....++.++|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45666677776644421  22222 23667789999999999999999999999999976        577788999999


Q ss_pred             HHHHHCCCchHHHHHHHHhhcCCC--------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc---CCCcchhhh
Q 013375          203 LCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL---GDGCDQMES  271 (444)
Q Consensus       203 ~~l~~~g~~~~A~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~---~~~~~~~~~  271 (444)
                      .++...|++++|+..|++++  ..        +|....++..+|.++ ...|++++|+.+++++++..   .+...+...
T Consensus        93 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRAL--EIREKVLGKFHPDVAKQLNNLALLC-QNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH--HHHHHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHH--HHHHHHcCCCChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999  66        466677788777765 45799999999999999962   111122346


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCC------HHHH
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---------NMRDLSILYRLSLEYAEQRK------LNAA  336 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~---------~P~~~~a~~~lg~~~~~~g~------~~~A  336 (444)
                      .++..+|.++...           |++++|+..|++++ ++         +|.....+..++......+.      +.++
T Consensus       170 ~~~~~la~~~~~~-----------g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T 3edt_B          170 KTKNNLASCYLKQ-----------GKYQDAETLYKEIL-TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY  237 (283)
T ss_dssp             HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred             HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            7889999998765           67899999999999 87         67777788888887776444      4555


Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          337 HYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       337 ~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      ...++......|+. ..++..+|.++..+|++++|+.+++++++..
T Consensus       238 ~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          238 GSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             -----CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            55555555556666 4899999999999999999999999999753

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=5.5e-18  Score=176.46  Aligned_cols=165  Identities=13%  Similarity=-0.011  Sum_probs=93.6

Q ss_pred             cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013375          174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT  253 (444)
Q Consensus       174 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~  253 (444)
                      .|++++|++.|+++++.+|+++.+|+++|.++...|++++|+..|++++  .++|+++.++..+|.++.. .|+      
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~-~g~------   72 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVARLGRVRWT-QQR------   72 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTSTTCHHHHHHHHHHHHH-TTC------
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-CCC------
Confidence            4788999999999999999999999999999999999999999999999  8999888777666555432 344      


Q ss_pred             HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013375          254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL  333 (444)
Q Consensus       254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~  333 (444)
                                                                  +++|++.|++++ +++|+++.+++++|.++..+|++
T Consensus        73 --------------------------------------------~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~  107 (568)
T 2vsy_A           73 --------------------------------------------HAEAAVLLQQAS-DAAPEHPGIALWLGHALEDAGQA  107 (568)
T ss_dssp             --------------------------------------------HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             --------------------------------------------HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCH
Confidence                                                        455555555555 55555555555555555555555


Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~---g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      ++|++.|+++++++|++ ..++.++|.++..+   |++++|+..++++++.+|  ++...+..++
T Consensus       108 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~  169 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEE-PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV--GAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC--CCSCHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC--cccChHHHhC
Confidence            55555555555555555 35555555555555   555555555555555555  4444444333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=4e-18  Score=146.17  Aligned_cols=84  Identities=8%  Similarity=0.025  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375          298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA  377 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~  377 (444)
                      +++|+..|++++ .++|+++.+|+++|.++..+|++++|+..|+++++++|+++ .+|+++|.++..+|++++|+.+|++
T Consensus        52 ~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~-~~~~~lg~~~~~lg~~~eA~~~~~~  129 (151)
T 3gyz_A           52 IEEAEVFFRFLC-IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY-TPVFHTGQCQLRLKAPLKAKECFEL  129 (151)
T ss_dssp             HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444444 44444444444444444444444444444444444444442 4444444444444444444444444


Q ss_pred             HHhhcC
Q 013375          378 ALDQTG  383 (444)
Q Consensus       378 al~~~P  383 (444)
                      ++++.|
T Consensus       130 al~l~~  135 (151)
T 3gyz_A          130 VIQHSN  135 (151)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            444444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.76  E-value=9.9e-20  Score=177.31  Aligned_cols=164  Identities=15%  Similarity=0.019  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---------
Q 013375          246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---------  316 (444)
Q Consensus       246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---------  316 (444)
                      +.+++|+..++++++..|     ....++..+|.++...           +++++|+..|++++ .++|++         
T Consensus       127 ~~~~~A~~~~~~a~~~~p-----~~a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~  189 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKL-----EQSTIVKERGTVYFKE-----------GKYKQALLQYKKIV-SWLEYESSFSNEEAQ  189 (336)
T ss_dssp             EEEECCCCGGGCCHHHHH-----HHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHTTTCCCCCSHHHH
T ss_pred             eecccccchhcCCHHHHH-----HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHhhccccCChHHHH
Confidence            445556666665555322     1256677777777654           56788888888888 888888         


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375          317 ------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL  390 (444)
Q Consensus       317 ------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  390 (444)
                            ..+++++|.++..+|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+..|+++++++|  ++..+
T Consensus       190 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a  266 (336)
T 1p5q_A          190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAA  266 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHH
Confidence                  6999999999999999999999999999999999 59999999999999999999999999999999  89999


Q ss_pred             HHHHHHHHHHhCCHHHH-HHHHHHHHHHHHhhhhhccCcc
Q 013375          391 LRTKAKVQLVQGQLKGA-VETYTHLLAALQVQTKTFSSDK  429 (444)
Q Consensus       391 ~~~la~~~~~~g~~~~A-~~~~~~al~l~~~~~~~~~~~~  429 (444)
                      +..++.++..+|++++| ...|+++++......+......
T Consensus       267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  306 (336)
T 1p5q_A          267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEA  306 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            99999999999999999 6689999988776666544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=9.2e-18  Score=159.10  Aligned_cols=199  Identities=13%  Similarity=-0.018  Sum_probs=163.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA  237 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~  237 (444)
                      |.++..+..+|.++...|++++|+..|++++..+|+++.+|+++|.++..+|++++|+..|++++  .++|+++.+++.+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL--ELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCCHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999  8999999999988


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375          238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL  317 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~  317 (444)
                      |.++. ..|++++|+..|+++++..|.+...+...++..+                   +..++........ ...|.++
T Consensus        79 g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~  137 (281)
T 2c2l_A           79 GQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------------------RIAKKKRWNSIEE-RRIHQES  137 (281)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------------------HHHHHHHHHHHHH-TCCCCCC
T ss_pred             HHHHH-HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------------------HHHHHHHHHHHHH-HHHhhhH
Confidence            87765 5789999999999999976543222212222211                   1234444555566 7889999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhc
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQT  382 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-g~~~eA~~~~~~al~~~  382 (444)
                      .+...++.++  .|++++|++.++++++++|++ ......++.++... +++++|...|.++.+..
T Consensus       138 ~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          138 ELHSYLTRLI--AAERERELEECQRNHEGHEDD-GHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             HHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHhhhccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            9988888765  689999999999999999987 47777777777666 77899999999887644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.75  E-value=1e-15  Score=167.29  Aligned_cols=308  Identities=11%  Similarity=0.035  Sum_probs=213.9

Q ss_pred             HHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCcc-----ccHHH---HHHHHHH--------HHHHHHHHhCCh
Q 013375           16 KAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGAD-----CKLQE---TLNRAVE--------LLPELWKLADAP   79 (444)
Q Consensus        16 ~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~l~~---~~~~a~~--------~l~~~~~~~g~~   79 (444)
                      ..++|...|.+.+|++.+++++-. ++.+.    ++....     +.+..   -......        ..|.++...|.+
T Consensus       991 ~vKaf~~aglp~EaieLLEKivl~-~s~fs----~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A          991 TVKAFMTADLPNELIELLEKIVLD-NSVFS----EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHcC-CCccc----ccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence            455666899999999999998822 11000    000000     00000   0111222        257889999999


Q ss_pred             HHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC
Q 013375           80 RETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW  159 (444)
Q Consensus        80 ~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~  159 (444)
                      +||+..|+++-..    + .       .. ..++                   ...+++++|+...         . ..+
T Consensus      1066 EEAf~IYkKa~~~----~-~-------A~-~VLi-------------------e~i~nldrAiE~A---------e-rvn 1103 (1630)
T 1xi4_A         1066 EEAFAIFRKFDVN----T-S-------AV-QVLI-------------------EHIGNLDRAYEFA---------E-RCN 1103 (1630)
T ss_pred             HHHHHHHHHcCCH----H-H-------HH-HHHH-------------------HHHhhHHHHHHHH---------H-hcC
Confidence            9999999997532    1 1       01 1111                   1245788888764         1 257


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-hHHHHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIAS  238 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-~~a~~~~~  238 (444)
                      .+.+|+.+|.++...|++++|+.+|.++     ++++.|+.+|.++...|++++|++.|..|.  +..|+. +...  ++
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mAr--k~~~e~~Idt~--La 1174 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKARESYVETE--LI 1174 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhcccccccHH--HH
Confidence            8999999999999999999999999886     889999999999999999999999999999  666542 3322  33


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~  318 (444)
                       .++.+.+++++ +..|   ++  .++     ...+..+|..+...           |++++|+..|.++-         
T Consensus      1175 -faYAKl~rlee-le~f---I~--~~n-----~ad~~~iGd~le~e-----------g~YeeA~~~Y~kA~--------- 1222 (1630)
T 1xi4_A         1175 -FALAKTNRLAE-LEEF---IN--GPN-----NAHIQQVGDRCYDE-----------KMYDAAKLLYNNVS--------- 1222 (1630)
T ss_pred             -HHHHhhcCHHH-HHHH---Hh--CCC-----HHHHHHHHHHHHhc-----------CCHHHHHHHHHhhh---------
Confidence             34455678764 4433   32  222     24566788888664           57899999998763         


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      .|..+|.++.++|++++|++.+++|     .+ ..+|...+.+....|+|..|..+... +..+|  +   -+..++..+
T Consensus      1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n-~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~--d---eLeeli~yY 1290 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQAAVDGARKA-----NS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA--D---ELEELINYY 1290 (1630)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHh-----CC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH--H---HHHHHHHHH
Confidence            6889999999999999999999998     33 37787777777777778877777663 55555  3   333667777


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          399 LVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ...|.+++|+..|+++|.+.+.+.+
T Consensus      1291 e~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A         1291 QDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred             HHcCCHHHHHHHHHHHhccChhHhH
Confidence            7778888888888777777665544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=1.2e-17  Score=142.70  Aligned_cols=118  Identities=14%  Similarity=0.067  Sum_probs=113.0

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      ..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+.+|++++.++
T Consensus         8 ~~~~~al-~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            8 GTIAMLN-EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CSHHHHT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHH-cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4688999 9999999999999999999999999999999999999999 5999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      |  +++.+++++|.++..+|++++|+..|++++++.|++...
T Consensus        86 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           86 I--XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             C--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            9  899999999999999999999999999999999976543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.75  E-value=1.9e-16  Score=152.93  Aligned_cols=239  Identities=9%  Similarity=0.000  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC-C-CchHH
Q 013375          138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGA-G-EDLVA  214 (444)
Q Consensus       138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-g-~~~~A  214 (444)
                      .++|+.+.     +.++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|+..+.++... + +++++
T Consensus        70 se~AL~lt-----~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           70 SERALELT-----EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CHHHHHHH-----HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence            45677653     6678999999999999999999999 599999999999999999999999999999998 8 99999


Q ss_pred             HHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375          215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--------EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK  286 (444)
Q Consensus       215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--------eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~  286 (444)
                      +..+.+++  ..+|+|..++...+.+. ...+.++        +++.+++++++..+.+     ..||++.|.++...+.
T Consensus       145 L~~~~k~L--~~dpkNy~AW~~R~wvl-~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-----~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          145 IEYIHGSL--LPDPKNYHTWAYLHWLY-SHFSTLGRISEAQWGSELDWCNEMLRVDGRN-----NSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHT--SSCTTCHHHHHHHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHH--HhCCCCHHHHHHHHHHH-HHhccccccchhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence            99999999  99999999998776664 3344555        9999999999975544     5799999998877543


Q ss_pred             hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhh
Q 013375          287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL--------------------NAAHYYAKMLLKL  346 (444)
Q Consensus       287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l  346 (444)
                      ...    ....++++++.+++++ .++|+|..+|+++..++...|+.                    .+-...+...+..
T Consensus       217 ~~~----~~~~~~eELe~~~~aI-~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (349)
T 3q7a_A          217 AET----SSRSLQDELIYILKSI-HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD  291 (349)
T ss_dssp             CCC----CHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred             ccc----chHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence            110    1124789999999999 99999999999999999887764                    3344444444443


Q ss_pred             c------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHH
Q 013375          347 E------GGSNLKGWLLMARILSAQKRYEDAETILNAAL-DQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       347 ~------P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al-~~~P~~~~~~~~~~la~~  397 (444)
                      .      +.+ .-++..++.++..+|+.++|+.+|+... +.+|  -....|..++..
T Consensus       292 ~~~~~~~~~s-~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp--ir~~yw~~~~~~  346 (349)
T 3q7a_A          292 PLPEDTPLPV-PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ--MRAGYWEFRRRE  346 (349)
T ss_dssp             CCCSSCCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHH
T ss_pred             ccccccCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh--HHHHHHHHHHHh
Confidence            3      455 4899999999999999999999999987 6788  778888777654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.75  E-value=7e-17  Score=146.38  Aligned_cols=190  Identities=16%  Similarity=0.080  Sum_probs=147.5

Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCC----CHHHHHHH
Q 013375          179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD----LAEEGATF  254 (444)
Q Consensus       179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~----~~~eA~~~  254 (444)
                      +|+..|+++.+.  +++.++++||.+|...|++++|+..|++++  .  ++++.+++.+|.++..  +    ++++|+.+
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~--~g~~~a~~~lg~~y~~--~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAA--A--QGDGDALALLAQLKIR--NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--H--TTCHHHHHHHHHHTTS--STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--H--cCCHHHHHHHHHHHHc--CCCCCCHHHHHHH
Confidence            466777777764  778888888888888888888888888888  3  4677788777776544  4    78888888


Q ss_pred             HHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH---
Q 013375          255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAE---  329 (444)
Q Consensus       255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~~lg~~~~~---  329 (444)
                      |+++++.  .+     ..+++.||.+|..-..       -.+++++|+..|++++ +.+|  +++.++++||.+|..   
T Consensus        76 ~~~A~~~--g~-----~~a~~~Lg~~y~~g~g-------~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g  140 (212)
T 3rjv_A           76 AEKAVEA--GS-----KSGEIVLARVLVNRQA-------GATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVH  140 (212)
T ss_dssp             HHHHHHT--TC-----HHHHHHHHHHHTCGGG-------SSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHC--CC-----HHHHHHHHHHHHcCCC-------CccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCC
Confidence            8888762  21     4678888888764110       0246899999999999 9988  459999999999999   


Q ss_pred             -cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-c-----CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          330 -QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-K-----RYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       330 -~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-g-----~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                       .+++++|+.+|++++++ |.++ .++++||.+|... |     ++++|+.+|++|++..+    ..+...++.+
T Consensus       141 ~~~d~~~A~~~~~~A~~~-~~~~-~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~----~~A~~~l~~l  209 (212)
T 3rjv_A          141 GPEDDVKASEYFKGSSSL-SRTG-YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF----DTGCEEFDRI  209 (212)
T ss_dssp             SSCCHHHHHHHHHHHHHT-SCTT-HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC----HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHc-CCCH-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHh
Confidence             88999999999999998 6665 8999999999765 3     89999999999998754    3455555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.73  E-value=5.6e-17  Score=168.81  Aligned_cols=156  Identities=10%  Similarity=-0.099  Sum_probs=128.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375          246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL  325 (444)
Q Consensus       246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~  325 (444)
                      |++++|+..|+++++..|.+     ..+++.+|.++...           |++++|++.|++++ +++|+++.+++++|.
T Consensus         3 g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~   65 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQD-----FVAWLMLADAELGM-----------GDTTAGEMAVQRGL-ALHPGHPEAVARLGR   65 (568)
T ss_dssp             ------------------CC-----HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-TTSTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Confidence            45667777777777744332     45677777777654           57899999999999 999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh---C
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ---G  402 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~---g  402 (444)
                      ++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|+++++.+|  ++..++.++|.++..+   |
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g  142 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWR  142 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999 59999999999999999999999999999999  8999999999999999   9


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 013375          403 QLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       403 ~~~~A~~~~~~al~l~~~~  421 (444)
                      ++++|++.|+++++..|+.
T Consensus       143 ~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             THHHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHhcCCcc
Confidence            9999999999999998864

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.73  E-value=5.7e-17  Score=155.47  Aligned_cols=228  Identities=13%  Similarity=0.044  Sum_probs=161.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI-AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV  213 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~  213 (444)
                      .|++++|..++..     +.+..+..          +.. .+++++|+..|+++              |.+|...|++++
T Consensus         4 ~~~~~eA~~~~~~-----a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~   54 (307)
T 2ifu_A            4 AQKISEAHEHIAK-----AEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQ   54 (307)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHH-----HHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHH
Confidence            4577888877532     22322321          112 47888888887765              667888888888


Q ss_pred             HHHHHHHhhcCCCCCCC------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhh
Q 013375          214 ALNLLRTLLSGSEDPKC------LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSK  286 (444)
Q Consensus       214 A~~~~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~  286 (444)
                      |+..|.+++  .+.+..      ..++..+|.+ +...|++++|+.+|++++++.... +......++..+|.+|..   
T Consensus        55 A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~---  128 (307)
T 2ifu_A           55 AKDAYLQEA--EAHANNRSLFHAAKAFEQAGMM-LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP---  128 (307)
T ss_dssp             HHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---
Confidence            888888888  555432      2344444444 455678888888888888864322 122335678888888854   


Q ss_pred             hhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHH
Q 013375          287 VAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGW  355 (444)
Q Consensus       287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~  355 (444)
                               |++++|+..|++++ .+.|.+      ..++.++|.++..+|++++|+.+|++++++.|++.     ..++
T Consensus       129 ---------g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  198 (307)
T 2ifu_A          129 ---------LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC  198 (307)
T ss_dssp             ---------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence                     46899999999999 888765      57889999999999999999999999999987653     2478


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHHHHHHHHHhCCHHHHHH
Q 013375          356 LLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRTKAKVQLVQGQLKGAVE  409 (444)
Q Consensus       356 ~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~la~~~~~~g~~~~A~~  409 (444)
                      ..+|.++..+|++++|+.+|++++ ..|+...   ...+..++..+ ..|+.+....
T Consensus       199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          199 IAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            889999999999999999999999 9983211   12233444444 5666654443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.73  E-value=2e-17  Score=139.80  Aligned_cols=118  Identities=18%  Similarity=0.115  Sum_probs=110.2

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      ..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|++++.++
T Consensus         5 ~~l~~al-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLR-GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHH-cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            5788899 9999999999999999999999999999999999999999 5999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      |  +++.+++++|.++..+|++++|+..|++++++.|++...
T Consensus        83 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  122 (142)
T 2xcb_A           83 I--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH  122 (142)
T ss_dssp             T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred             C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence            9  899999999999999999999999999999999976654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=3.4e-15  Score=163.20  Aligned_cols=292  Identities=11%  Similarity=0.020  Sum_probs=213.5

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      .+.|++.|+++++.|++++|+..|.++         + .              ..++...+.++.+.|++++|+.+|..+
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---------d-D--------------~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---------D-D--------------PSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc---------C-C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            578899999999999999999988653         0 1              135666788899999999999999998


Q ss_pred             hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375           90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF  169 (444)
Q Consensus        90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~  169 (444)
                      .+.    +++..  +...++.                    .|.+.+++++ +..+        + ..| +...+..+|.
T Consensus      1161 rk~----~~e~~--Idt~Laf--------------------aYAKl~rlee-le~f--------I-~~~-n~ad~~~iGd 1203 (1630)
T 1xi4_A         1161 RKK----ARESY--VETELIF--------------------ALAKTNRLAE-LEEF--------I-NGP-NNAHIQQVGD 1203 (1630)
T ss_pred             Hhh----ccccc--ccHHHHH--------------------HHHhhcCHHH-HHHH--------H-hCC-CHHHHHHHHH
Confidence            887    21110  0111222                    2233456654 3322        1 234 4456667999


Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013375          170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE  249 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~  249 (444)
                      .+...|++++|..+|.++        ..|..+|.+|..+|++++|++++++|.  .     +.+|...+..|.. .|++.
T Consensus      1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~--n-----~~aWkev~~acve-~~Ef~ 1267 (1630)
T 1xi4_A         1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--S-----TRTWKEVCFACVD-GKEFR 1267 (1630)
T ss_pred             HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC--C-----HHHHHHHHHHHhh-hhHHH
Confidence            999999999999999986        588999999999999999999999987  2     3566655556654 57787


Q ss_pred             HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013375          250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE  329 (444)
Q Consensus       250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~  329 (444)
                      .|..+... +...        +.-+..++..|.           +.|.+++|+..+++++ .++|.+...+..||.++.+
T Consensus      1268 LA~~cgl~-Iiv~--------~deLeeli~yYe-----------~~G~feEAI~LlE~aL-~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1268 LAQMCGLH-IVVH--------ADELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHh-hhcC--------HHHHHHHHHHHH-----------HcCCHHHHHHHHHHHh-ccChhHhHHHHHHHHHHHh
Confidence            88777664 3211        122334444443           3578999999999999 9999999999999988876


Q ss_pred             --cCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHH
Q 013375          330 --QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGEL  390 (444)
Q Consensus       330 --~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~------------~P~~~~~~~  390 (444)
                        -++..++++.|...+.+.|     ++ ...|..+..+|.+.|+|+.|+..+-.....            .+  .|+++
T Consensus      1327 y~peklmEhlk~f~~rini~k~~r~~e~-~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv--~n~el 1403 (1630)
T 1xi4_A         1327 FKPQKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVEL 1403 (1630)
T ss_pred             CCHHHHHHHHHHHHHhcccchHhHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc--ccHHH
Confidence              4688999999999999888     66 489999999999999999999554443322            44  68898


Q ss_pred             HHHHHHHHHHhC
Q 013375          391 LRTKAKVQLVQG  402 (444)
Q Consensus       391 ~~~la~~~~~~g  402 (444)
                      ++.-..-+...+
T Consensus      1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHHHHHHhhC
Confidence            888877777655

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.72  E-value=1.2e-17  Score=160.19  Aligned_cols=208  Identities=13%  Similarity=0.024  Sum_probs=167.2

Q ss_pred             cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013375          174 AGDLSSLATQIEELLPGIINRKERYHILALCYYG-AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA  252 (444)
Q Consensus       174 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~  252 (444)
                      .|++++|.+.++++.+..+..          ++. .|++++|+..|.++.  .               ++...|++++|+
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~--~---------------~~~~~g~~~~A~   56 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA--V---------------AFKNAKQLEQAK   56 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH--H---------------HHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH--H---------------HHHHcCCHHHHH
Confidence            578889999999888765542          122 588999999999876  1               234468999999


Q ss_pred             HHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--C----HHHHHHHHH
Q 013375          253 TFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--D----LSILYRLSL  325 (444)
Q Consensus       253 ~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~----~~a~~~lg~  325 (444)
                      .+|.+++++.+.. +......++..+|.+|..+           |++++|+..|++++ ++.+.  +    ..++.++|.
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~  124 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-----------QRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGK  124 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Confidence            9999999975422 1223356788899988764           57899999999999 88542  2    468899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----HHHHHHHHH
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GELLRTKAK  396 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~----~~~~~~la~  396 (444)
                      +|.. |++++|+.+|++|+++.|+..     ..++.++|.++..+|+|++|+.+|++++++.|+...    ..++..+|.
T Consensus       125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~  203 (307)
T 2ifu_A          125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL  203 (307)
T ss_dssp             HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            9998 999999999999999988641     368899999999999999999999999998772111    347888999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          397 VQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       397 ~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ++..+|++++|+..|++++ +.|...
T Consensus       204 ~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          204 VQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            9999999999999999999 877543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.72  E-value=7e-18  Score=166.80  Aligned_cols=302  Identities=12%  Similarity=0.024  Sum_probs=161.2

Q ss_pred             HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375           11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL   90 (444)
Q Consensus        11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL   90 (444)
                      +.|..+|.++.+.|++++|++.|.++-+          +              .++...+..+...|++++|+.+++.++
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika~D----------~--------------~~y~~V~~~ae~~g~~EeAi~yl~~ar   88 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKADD----------P--------------SSYMEVVQAANTSGNWEELVKYLQMAR   88 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCC----------H--------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            5788888888888888888888865311          1              133444456677888899988888887


Q ss_pred             CcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375           91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA  170 (444)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~  170 (444)
                      +.    .++  ..+.                    ..+...|.+.|+++++...+          ..| +..+|..+|..
T Consensus        89 k~----~~~--~~i~--------------------~~Li~~Y~Klg~l~e~e~f~----------~~p-n~~a~~~IGd~  131 (449)
T 1b89_A           89 KK----ARE--SYVE--------------------TELIFALAKTNRLAELEEFI----------NGP-NNAHIQQVGDR  131 (449)
T ss_dssp             ----------------------------------------------CHHHHTTTT----------TCC------------
T ss_pred             Hh----Ccc--chhH--------------------HHHHHHHHHhCCHHHHHHHH----------cCC-cHHHHHHHHHH
Confidence            75    111  0011                    11224566678888876542          224 44699999999


Q ss_pred             HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013375          171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE  250 (444)
Q Consensus       171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e  250 (444)
                      +...|++++|..+|.++        ..|..||.++..+|++++|+.+|+++-       ++..|......|.. .|+++.
T Consensus       132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~-~~ef~l  195 (449)
T 1b89_A          132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD-GKEFRL  195 (449)
T ss_dssp             -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHH-cCcHHH
Confidence            99999999999999977        478899999999999999999999984       45666666666755 678888


Q ss_pred             HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013375          251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE-  329 (444)
Q Consensus       251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~-  329 (444)
                      |..+....+ .   +++     -...+...|.           +.|++++|+..+++++ .++|.+..++..||.+|.+ 
T Consensus       196 A~~~~l~L~-~---~ad-----~l~~lv~~Ye-----------k~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          196 AQMCGLHIV-V---HAD-----ELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHTTTTTT-T---CHH-----HHHHHHHHHH-----------HTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH-h---CHh-----hHHHHHHHHH-----------HCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhc
Confidence            877665422 1   111     1112334443           4578999999999999 9999999999999998875 


Q ss_pred             -cCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHHH
Q 013375          330 -QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGELL  391 (444)
Q Consensus       330 -~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~------------~P~~~~~~~~  391 (444)
                       .+++.++++.|...+.+.|     +++ ..|..+..+|...++|+.|+...-.....            .+  .|.+++
T Consensus       255 ~p~k~~ehl~~~~~~ini~k~~~~~~~~-~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv--~n~ely  331 (449)
T 1b89_A          255 KPQKMREHLELFWSRVNIPKVLRAAEQA-HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVELY  331 (449)
T ss_dssp             CHHHHHHHHHHHSTTSCHHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC--SSTHHH
T ss_pred             CHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhch--hHHHHH
Confidence             4689999999999999999     874 99999999999999999999877665544            55  688888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          392 RTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       392 ~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      +.....+.  ++.+.++..+..++
T Consensus       332 Ykai~fyl--~~~p~~l~~ll~~l  353 (449)
T 1b89_A          332 YRAIQFYL--EFKPLLLNDLLMVL  353 (449)
T ss_dssp             HHHHHHHH--HHCGGGHHHHHHHH
T ss_pred             HHHHHHHH--hcCHHHHHHHHHHH
Confidence            87766666  44566677777776

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.71  E-value=2.2e-17  Score=154.77  Aligned_cols=198  Identities=13%  Similarity=0.005  Sum_probs=154.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHH-------
Q 013375          135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHL-------SFAFSIAGDLSSLATQIEELLPGIINRKERYHI-------  200 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~l-------g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------  200 (444)
                      .++.++|...+     ..++..+|+..++|..+       +.++...+++.+++..+++.+.+.|+...++++       
T Consensus        19 ~~d~~~A~~~F-----~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           19 PMSEARSLDLF-----TEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred             CCCHHHHHHHH-----HHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence            46788888875     56678999999999999       899999999999999999999998887666666       


Q ss_pred             --------------HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Q 013375          201 --------------LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC  266 (444)
Q Consensus       201 --------------la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~  266 (444)
                                    +|.+|...|++++|...|..++  ...|+++ +.+..+.+++. .+++++|+.++++++. .++  
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~--~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~-~~d--  166 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP--VAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGK-WPD--  166 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC--CTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGG-CSC--
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhc-cCC--
Confidence                          8899999999999999999999  8999888 77777766654 6788888888876655 221  


Q ss_pred             chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375          267 DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN--MR-DLSILYRLSLEYAEQRKLNAAHYYAKML  343 (444)
Q Consensus       267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~--P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a  343 (444)
                      +.....+++++|.++...           |++++|+..|++++ ...  |. .+++++++|.++.++|+.++|...|+++
T Consensus       167 ~~~~~~a~~~LG~al~~L-----------G~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANL-----------ALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            112235677777777554           56778888888777 544  55 5567778888888888888888888888


Q ss_pred             HhhcCCCChHHHHHH
Q 013375          344 LKLEGGSNLKGWLLM  358 (444)
Q Consensus       344 l~l~P~~~~~~~~~l  358 (444)
                      ++.+|+ + .++..|
T Consensus       235 ~a~~P~-~-~~~~aL  247 (282)
T 4f3v_A          235 QTTHPE-P-KVAAAL  247 (282)
T ss_dssp             HHHSCC-H-HHHHHH
T ss_pred             HhcCCc-H-HHHHHH
Confidence            888777 4 655544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.70  E-value=2.6e-16  Score=134.33  Aligned_cols=107  Identities=10%  Similarity=0.103  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------CChH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh---
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-------SNLK-----GWLLMARILSAQKRYEDAETILNAALDQ---  381 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~~~-----~~~~la~~l~~~g~~~eA~~~~~~al~~---  381 (444)
                      +..+.++|..+...|++++|+..|++|++++|+       + ..     +|.++|.++..+|+|++|+.+|++||++   
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~-~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD-HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh-hccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            457889999999999999999999999999999       4 24     9999999999999999999999999999   


Q ss_pred             ----cCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013375          382 ----TGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS  426 (444)
Q Consensus       382 ----~P~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  426 (444)
                          +|  ++..+|    +++|.++..+|++++|+.+|++++++.|++.....
T Consensus        90 ~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A           90 RGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             HCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             cccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence                99  999999    99999999999999999999999999998766443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=8.7e-16  Score=126.01  Aligned_cols=134  Identities=22%  Similarity=0.232  Sum_probs=125.3

Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                      .+++.+|.++...           |++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++..+|++ 
T Consensus         2 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-   68 (136)
T 2fo7_A            2 EAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-   68 (136)
T ss_dssp             HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-
T ss_pred             cHHHHHHHHHHHc-----------CcHHHHHHHHHHHH-HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-
Confidence            3577788877654           67899999999999 9999999999999999999999999999999999999998 


Q ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      ..+|..+|.++...|++++|+.++++++...|  ++..+++.+|.++...|++++|+..|++++++.|+
T Consensus        69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            59999999999999999999999999999999  88999999999999999999999999999988764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=1.6e-16  Score=135.52  Aligned_cols=118  Identities=11%  Similarity=-0.056  Sum_probs=102.9

Q ss_pred             HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013375          254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL  333 (444)
Q Consensus       254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~  333 (444)
                      .|+++++.. |+    ...+++.+|.++...           |++++|+..|++++ .++|+++.+|+++|.++...|++
T Consensus         9 ~~~~al~~~-p~----~~~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~   71 (148)
T 2vgx_A            9 TIAMLNEIS-SD----TLEQLYSLAFNQYQS-----------GXYEDAHXVFQALC-VLDHYDSRFFLGLGACRQAMGQY   71 (148)
T ss_dssp             SHHHHTTCC-HH----HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHcCC-Hh----hHHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-HcCcccHHHHHHHHHHHHHHhhH
Confidence            456666632 21    256777888887654           67999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      ++|+..|+++++++|+++ .+|+++|.++..+|++++|+.+|++++++.|  +++...
T Consensus        72 ~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~  126 (148)
T 2vgx_A           72 DLAIHSYSYGAVMDIXEP-RFPFHAAECLLQXGELAEAESGLFLAQELIA--NXPEFX  126 (148)
T ss_dssp             HHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT--TCGGGH
T ss_pred             HHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CCCcch
Confidence            999999999999999995 9999999999999999999999999999999  665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.68  E-value=3e-18  Score=166.79  Aligned_cols=201  Identities=10%  Similarity=-0.001  Sum_probs=161.4

Q ss_pred             CCcHHHHHHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHhhcCCCCCCHHHH
Q 013375          135 RNNIEEAILLLMILLRKV----ALKRIEWDPSILDHLSFAFS------------IAGDLSSLATQIEELLPGIINRKERY  198 (444)
Q Consensus       135 ~~~~~eAi~~l~~~~~~~----~l~~~p~~~~~~~~lg~~l~------------~~g~~~~A~~~~~~al~~~p~~~~~~  198 (444)
                      .+.+++|+..+     +.    .+...|+.  +|..+|....            ..+++++|++.|++++..+|+++.+|
T Consensus        78 ~~~~e~al~~~-----~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~  150 (336)
T 1p5q_A           78 PYGLERAIQRM-----EKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV  150 (336)
T ss_dssp             CHHHHHHHTTC-----CTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred             chHHHHHHhcC-----CCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence            34577776643     22    34556665  5556665443            56778889999999999999999999


Q ss_pred             HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013375          199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG  278 (444)
Q Consensus       199 ~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg  278 (444)
                      +++|.++...|++++|+..|++++  .++|++...           ..  +++.       +.     ......+++++|
T Consensus       151 ~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~-----------~~--~~~~-------~~-----~~~~~~~~~nla  203 (336)
T 1p5q_A          151 KERGTVYFKEGKYKQALLQYKKIV--SWLEYESSF-----------SN--EEAQ-------KA-----QALRLASHLNLA  203 (336)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH--HHTTTCCCC-----------CS--HHHH-------HH-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH--HHhhccccC-----------Ch--HHHH-------HH-----HHHHHHHHHHHH
Confidence            999999999999999999999999  889987531           00  1111       10     012356889999


Q ss_pred             hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      .++...           +++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++..+
T Consensus       204 ~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l  270 (336)
T 1p5q_A          204 MCHLKL-----------QAFSAAIESCNKAL-ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQL  270 (336)
T ss_dssp             HHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHH
T ss_pred             HHHHHc-----------CCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHH
Confidence            999765           67999999999999 9999999999999999999999999999999999999999 5999999


Q ss_pred             HHHHHHccCHHHH-HHHHHHHHhhc
Q 013375          359 ARILSAQKRYEDA-ETILNAALDQT  382 (444)
Q Consensus       359 a~~l~~~g~~~eA-~~~~~~al~~~  382 (444)
                      +.++..+|++++| ...|++.+...
T Consensus       271 ~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          271 AVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999 56778777543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.68  E-value=1.9e-15  Score=129.64  Aligned_cols=138  Identities=12%  Similarity=0.023  Sum_probs=124.5

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +..++.+|.++...           |++++|+..|++++ ..+|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus        13 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           13 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            56778888887654           67999999999999 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT--KAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                       ..+|..+|.++..+|++++|+.+++++++.+|  ++..++..  ++..+...|++++|+..++++.++.+....
T Consensus        81 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  152 (166)
T 1a17_A           81 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI  152 (166)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence             59999999999999999999999999999999  78888744  555588999999999999999988875443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.67  E-value=1.5e-15  Score=137.46  Aligned_cols=181  Identities=9%  Similarity=-0.069  Sum_probs=155.2

Q ss_pred             hHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhch
Q 013375          212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD  291 (444)
Q Consensus       212 ~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~  291 (444)
                      .+|+..|+++.  .  .+++.+++.+|.++.. .+++++|+.+|+++++.  .+     ..+++.+|.+|...+.     
T Consensus         3 ~eA~~~~~~aa--~--~g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~--g~-----~~a~~~lg~~y~~~g~-----   65 (212)
T 3rjv_A            3 TEPGSQYQQQA--E--AGDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQ--GD-----GDALALLAQLKIRNPQ-----   65 (212)
T ss_dssp             -CTTHHHHHHH--H--TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHTTSSTT-----
T ss_pred             chHHHHHHHHH--H--CCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCC-----
Confidence            46889999999  3  4889999988888655 68999999999999984  22     5789999999876211     


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHH-
Q 013375          292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSA-  364 (444)
Q Consensus       292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P--~~~~~~~~~la~~l~~-  364 (444)
                         ..++++|+..|++++ .  ++++.++++||.+|..    .+++++|+.+|+++++..|  ++ ..++++||.++.. 
T Consensus        66 ---~~~~~~A~~~~~~A~-~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-~~a~~~Lg~~y~~g  138 (212)
T 3rjv_A           66 ---QADYPQARQLAEKAV-E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-VDAQMLLGLIYASG  138 (212)
T ss_dssp             ---SCCHHHHHHHHHHHH-H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH-HHHHHHHHHHHHHT
T ss_pred             ---CCCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch-HHHHHHHHHHHHcC
Confidence               126899999999998 4  6899999999999998    8999999999999999998  34 4999999999999 


Q ss_pred             ---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHHHHH
Q 013375          365 ---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-G-----QLKGAVETYTHLLAALQ  419 (444)
Q Consensus       365 ---~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~l~~  419 (444)
                         .+++++|+.+|++|++. |  .+..+++++|.++..- |     ++++|+..|+++.+.-.
T Consensus       139 ~g~~~d~~~A~~~~~~A~~~-~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          139 VHGPEDDVKASEYFKGSSSL-S--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             SSSSCCHHHHHHHHHHHHHT-S--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence               88999999999999998 6  5778999999999764 3     89999999999998743

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2e-15  Score=124.25  Aligned_cols=115  Identities=15%  Similarity=0.075  Sum_probs=98.6

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +..++.+|..+...           |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         4 a~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A            4 AEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            45677788777654           57889999999999 8999999999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHH
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQT------GKWEQGELLRTKAKVQLV  400 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~------P~~~~~~~~~~la~~~~~  400 (444)
                       ..+|..+|.++..+|++++|+..|+++++++      |  ++..++..++.+...
T Consensus        72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p--~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLYYKASQQ  124 (126)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch--hHHHHHHHHHHHHHh
Confidence             5899999999999999999999999999998      8  788888877776544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.67  E-value=2.1e-16  Score=133.54  Aligned_cols=114  Identities=11%  Similarity=-0.069  Sum_probs=101.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..+++.+|.++...           |++++|+..|++++ ..+|+++.+|+.+|.++...|++++|+..|+++++++|++
T Consensus        18 ~~~~~~~a~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A           18 LEQLYALGFNQYQA-----------GKWDDAQKIFQALC-MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHH-----------ccHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45667777777554           67999999999999 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      + .+|+.+|.++..+|++++|+.+|+++++..|  +++.....+..+..
T Consensus        86 ~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~  131 (142)
T 2xcb_A           86 P-RFPFHAAECHLQLGDLDGAESGFYSARALAA--AQPAHEALAARAGA  131 (142)
T ss_dssp             T-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TCGGGHHHHHHHHH
T ss_pred             c-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCcchHHHHHHHHH
Confidence            6 9999999999999999999999999999999  77666555544433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=7e-16  Score=160.17  Aligned_cols=195  Identities=10%  Similarity=0.005  Sum_probs=166.1

Q ss_pred             HHhcCCH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC----------chHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375          171 FSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASK  239 (444)
Q Consensus       171 l~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~----------~~~A~~~~~~al~~~~~P~~~~a~~~~~~  239 (444)
                      +...|++ ++|++.+++++.++|++..+|+..+.++...|+          +++++..+++++  ..+|++..+|...+.
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l--~~~pK~y~aW~hR~w  115 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCW  115 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH--HhCCCCHHHHHHHHH
Confidence            4455555 688999999999999999999999999999988          788888888888  788888877766554


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013375          240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI  319 (444)
Q Consensus       240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a  319 (444)
                      +.. ..++                                                .+++++++.+.+++ ++||.|..+
T Consensus       116 ~l~-~l~~------------------------------------------------~~~~~el~~~~k~l-~~d~~N~~a  145 (567)
T 1dce_A          116 LLS-RLPE------------------------------------------------PNWARELELCARFL-EADERNFHC  145 (567)
T ss_dssp             HHH-TCSS------------------------------------------------CCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred             HHH-Hccc------------------------------------------------ccHHHHHHHHHHHH-hhccccccH
Confidence            432 1110                                                03578999999999 999999999


Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHhhcCC
Q 013375          320 LYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ--------------KRYEDAETILNAALDQTGK  384 (444)
Q Consensus       320 ~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~--------------g~~~eA~~~~~~al~~~P~  384 (444)
                      |++.|+++...| .++++++++.++++++|.+ ..+|+.++.++...              +++++|++++++|+..+| 
T Consensus       146 W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-  223 (567)
T 1dce_A          146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-  223 (567)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-
Confidence            999999999999 9999999999999999999 59999999999885              678999999999999999 


Q ss_pred             CCcHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHh
Q 013375          385 WEQGELLRTKAKVQLVQGQLKG------------AVETYTHLLAALQV  420 (444)
Q Consensus       385 ~~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~l~~~  420 (444)
                       ++..+|++++.++...+++++            |+..|.+++.+.|.
T Consensus       224 -~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          224 -NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             -SCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             -CCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence             899999999999999988766            56667777776664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.66  E-value=4.4e-16  Score=136.12  Aligned_cols=125  Identities=15%  Similarity=0.148  Sum_probs=116.8

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHccCH--HHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRY--EDA  371 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~-l~~~g~~--~eA  371 (444)
                      .+++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKI-RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHH-HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcchHHH
Confidence            467899999999999 9999999999999999999999999999999999999999 5999999999 8899999  999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +.+++++++.+|  ++..+++.+|.++..+|++++|+..|++++++.|+...
T Consensus       101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999  89999999999999999999999999999999987654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.7e-15  Score=124.73  Aligned_cols=105  Identities=15%  Similarity=0.040  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      |.++..++.+|..+...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..++++++.+|  ++..+++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~   77 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIR   77 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence            5667899999999999999999999999999999999 59999999999999999999999999999999  89999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          394 KAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       394 la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      +|.++..+|++++|+..|++++++.|+.
T Consensus        78 lg~~~~~~~~~~~A~~~~~~al~~~p~~  105 (126)
T 3upv_A           78 KATAQIAVKEYASALETLDAARTKDAEV  105 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=2.9e-16  Score=148.73  Aligned_cols=197  Identities=10%  Similarity=0.011  Sum_probs=156.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                      |.++.+++.+|..+...|++++|+..|++++  ..+|+++.++..+|.++. ..|++++|+..++++++..|.+     .
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~-----~   72 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQS-----V   72 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTC-----H
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC-----H
Confidence            6788999999999999999999999999999  899999999988877654 4789999999999999854433     5


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                      .+++.+|.++...           |++++|+..|++++ +++|+++..+........   +..++...........|.++
T Consensus        73 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  137 (281)
T 2c2l_A           73 KAHFFLGQCQLEM-----------ESYDEAIANLQRAY-SLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQES  137 (281)
T ss_dssp             HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhH
Confidence            7888999988764           57899999999999 999987544333332222   23334444445556677775


Q ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Q 013375          352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLA  416 (444)
Q Consensus       352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  416 (444)
                       .....++.++  .|++++|+..++++++.+|  ++..+...++.++... +++++|...|+++.+
T Consensus       138 -~i~~~l~~l~--~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          138 -ELHSYLTRLI--AAERERELEECQRNHEGHE--DDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             -HHHHHHHHHH--HHHHHHHHTTTSGGGTTTS--CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             -HHHHHHHHHH--HHHHHHHHHHHHhhhcccc--chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence             7777787765  6999999999999999999  8888888887777666 678888888888765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.63  E-value=3.4e-15  Score=134.11  Aligned_cols=133  Identities=14%  Similarity=0.069  Sum_probs=120.6

Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                      ..++.+|.++...           |++++|+..|++++    +.++.+++++|.++...|++++|+..|+++++++|++ 
T Consensus         7 ~~~~~~g~~~~~~-----------~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-   70 (213)
T 1hh8_A            7 ISLWNEGVLAADK-----------KDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-   70 (213)
T ss_dssp             HHHHHHHHHHHHT-----------TCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHHHHHh-----------CCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-
Confidence            4567778777654           67999999999887    3378999999999999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375          352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG----------------ELLRTKAKVQLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al  415 (444)
                      ..+|.++|.++..+|++++|+..|+++++..|  ++.                .+++++|.++..+|++++|+..|++++
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR--GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            59999999999999999999999999999888  555                999999999999999999999999999


Q ss_pred             HHHHhhh
Q 013375          416 AALQVQT  422 (444)
Q Consensus       416 ~l~~~~~  422 (444)
                      ++.|+..
T Consensus       149 ~~~p~~~  155 (213)
T 1hh8_A          149 SMKSEPR  155 (213)
T ss_dssp             TTCCSGG
T ss_pred             HcCcccc
Confidence            9988653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.63  E-value=3.6e-15  Score=123.66  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=82.5

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +.++..+|.++..+           |++++|+..|++++ +++|+++.+|+++|.+|..+|++++|+..|+++++++|++
T Consensus         8 A~a~~~lG~~~~~~-----------~~~~~A~~~y~~Al-~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQ-----------KDFEKAHVHYDKAI-ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            45677788887654           56888888888888 8888888888888888888888888888888888888875


Q ss_pred             C------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          351 N------LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       351 ~------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .      +.+|..+|.++..+|++++|+.+|++++...|
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            3      14677788888888888888888888888887

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.63  E-value=1.1e-15  Score=126.81  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-------
Q 013375          315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-------  387 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~-------  387 (444)
                      +.+.++.++|.++.+.|++++|+..|++|++++|++ ..+|.++|.++..+|+|++|+..++++++++|  ++       
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~   82 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR--ETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc--ccchhhHHH
Confidence            446688999999999999999999999999999999 59999999999999999999999999999988  43       


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ..+++++|.++..+|++++|+..|++++++.|+.
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            3588999999999999999999999999987753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.63  E-value=1.9e-14  Score=136.63  Aligned_cols=185  Identities=13%  Similarity=0.090  Sum_probs=135.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                      |+....+...+..+...|++++|+..+++++  ...|........                                  .
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l--~~~~~~~~~~~~----------------------------------~  115 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------L  115 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTCCCCHHHHHH----------------------------------H
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--ccccCChhHHHH----------------------------------H
Confidence            3445566777888888999999999999888  666654321100                                  1


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLL-  344 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al-  344 (444)
                      ..++.+|.++...           |++++|+..|++++ .+.+..      ..+++++|.+|..+|++++|+.+|++++ 
T Consensus       116 ~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~  183 (293)
T 2qfc_A          116 QWQYYVAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHHTS-----------SCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-----------CCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1233344444332           45778888888887 765544      5688899999999999999999999998 


Q ss_pred             --hhcCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHH-HHHHHHH
Q 013375          345 --KLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGA-VETYTHL  414 (444)
Q Consensus       345 --~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~----~~~~~~~la~~~~~~g~~~~A-~~~~~~a  414 (444)
                        ...|++.   ..++.++|.++..+|+|++|+.+++++++..++.+    ...+++++|.++..+|++++| ...|+++
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence              4455531   15888999999999999999999999998765101    278889999999999999999 7779999


Q ss_pred             HHHHHhhhhh
Q 013375          415 LAALQVQTKT  424 (444)
Q Consensus       415 l~l~~~~~~~  424 (444)
                      +.+.....+.
T Consensus       264 l~~~~~~~~~  273 (293)
T 2qfc_A          264 SFFFDILEMH  273 (293)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHhCcH
Confidence            9988765543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.63  E-value=4.7e-15  Score=128.08  Aligned_cols=114  Identities=16%  Similarity=0.122  Sum_probs=104.4

Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      .+.+++.+|.++...           +++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+
T Consensus        10 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A           10 ESDKLKSEGNAAMAR-----------KEYSKAIDLYTQAL-SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            467788899888764           67999999999999 999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      + ..+|+++|.++..+|++++|+.+|+++++++|  ++..+|+.++...
T Consensus        78 ~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~l~~  123 (164)
T 3sz7_A           78 Y-SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG--NGGSDAMKRGLET  123 (164)
T ss_dssp             C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHH
Confidence            9 59999999999999999999999999999999  7877777766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.63  E-value=1e-14  Score=119.54  Aligned_cols=133  Identities=23%  Similarity=0.291  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013375          196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC  275 (444)
Q Consensus       196 ~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~  275 (444)
                      ++|+.+|.++...|++++|+..|++++  ..+|+++.++..                                       
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~---------------------------------------   40 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPRSAEAWYN---------------------------------------   40 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHH---------------------------------------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHH--HcCCcchhHHHH---------------------------------------
Confidence            456666777777777777777777766  555655443332                                       


Q ss_pred             HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH
Q 013375          276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW  355 (444)
Q Consensus       276 ~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  355 (444)
                       +|.++..           .+++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++..+|++ ..+|
T Consensus        41 -~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~  106 (136)
T 2fo7_A           41 -LGNAYYK-----------QGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAW  106 (136)
T ss_dssp             -HHHHHHH-----------HTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             -HHHHHHH-----------hcCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHH
Confidence             2333222           245677777777777 7777777777788888888888888888888888887777 4777


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          356 LLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       356 ~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ..+|.++...|++++|+.++++++..+|
T Consensus       107 ~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A          107 YNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            7788888888888888888888877777

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2.8e-16  Score=163.21  Aligned_cols=200  Identities=10%  Similarity=-0.058  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013375          138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD----------LSSLATQIEELLPGIINRKERYHILALCYYG  207 (444)
Q Consensus       138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~  207 (444)
                      .++|+..+     +.++..+|++..+|+..+.++...|+          ++++++.+++++..+|++..+|++.+.++..
T Consensus        45 ~eeal~~~-----~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           45 DESVLELT-----SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHH-----HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35777764     66789999999999999999999998          9999999999999999999999999999999


Q ss_pred             CC--CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013375          208 AG--EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS  285 (444)
Q Consensus       208 ~g--~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~  285 (444)
                      .|  ++++|+..+.+++  ..+|++..+|...+.+........++++++++++|+..|.+     ..+|+++|.++....
T Consensus       120 l~~~~~~~el~~~~k~l--~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-----~saW~~r~~ll~~l~  192 (567)
T 1dce_A          120 LPEPNWARELELCARFL--EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLH  192 (567)
T ss_dssp             CSSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-----HHHHHHHHHHHHHHS
T ss_pred             cccccHHHHHHHHHHHH--hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-----ccHHHHHHHHHHhhc
Confidence            99  6699999999999  89999999999888776553338999999999999965544     579999999887642


Q ss_pred             hhhhch---HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhhcCCC
Q 013375          286 KVAITD---FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA------------AHYYAKMLLKLEGGS  350 (444)
Q Consensus       286 ~~~~~~---~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~------------A~~~~~~al~l~P~~  350 (444)
                      ......   ....+.+++|++.+.+++ .++|+|..+|++++.++...+++++            |+..|.+++.++|..
T Consensus       193 ~~~~~~~~~~~~~~~~~eel~~~~~ai-~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          193 PQPDSGPQGRLPENVLLKELELVQNAF-FTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             CCCCSSSCCSSCHHHHHHHHHHHHHHH-HHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred             ccccccccccccHHHHHHHHHHHHHHH-hhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence            211000   001257899999999999 9999999999999999999999777            777899999999873

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.63  E-value=6.9e-15  Score=132.05  Aligned_cols=166  Identities=10%  Similarity=-0.001  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG  242 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~  242 (444)
                      .++.+|.++...|++++|+..|++++  +| ++.+|+++|.++...|++++|+..|++++  ..+|+++.+++.+|.++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCccchHHHHHHHHHHH
Confidence            46789999999999999999999997  33 78999999999999999999999999999  899999988888777654


Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013375          243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR  322 (444)
Q Consensus       243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~  322 (444)
                      . .|++++|+.+|+++++..|.+..           ..+..                       ..+ ..+|.++.++++
T Consensus        83 ~-~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~-----------------------~~~-~~~~~~~~~~~~  126 (213)
T 1hh8_A           83 Q-TEKYDLAIKDLKEALIQLRGNQL-----------IDYKI-----------------------LGL-QFKLFACEVLYN  126 (213)
T ss_dssp             H-TTCHHHHHHHHHHHHHTTTTCSE-----------EECGG-----------------------GTB-CCEEEHHHHHHH
T ss_pred             H-cccHHHHHHHHHHHHHhCCCccH-----------HHHHH-----------------------hcc-ccCccchHHHHH
Confidence            4 67888888888888885544321           00111                       112 466777799999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375          323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      +|.++..+|++++|+..|+++++++|++.             .++.++|+..+.+.....
T Consensus       127 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------~~~~~~a~~~~~~~~~~~  173 (213)
T 1hh8_A          127 IAFMYAKKEEWKKAEEQLALATSMKSEPR-------------HSKIDKAMECVWKQKLYE  173 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSGG-------------GGHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHcCcccc-------------cchHHHHHHHHHhccccc
Confidence            99999999999999999999999999863             245566666666554433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.62  E-value=4.5e-15  Score=128.24  Aligned_cols=109  Identities=14%  Similarity=-0.020  Sum_probs=104.4

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      .+|.++.+++.+|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|+++++++|  ++..+|
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~   82 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-PIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAW   82 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHH
Confidence            457778999999999999999999999999999999999 59999999999999999999999999999999  899999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       392 ~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +++|.++..+|++++|+..|++++++.|++..
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            99999999999999999999999999998765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.62  E-value=5.5e-16  Score=138.40  Aligned_cols=119  Identities=13%  Similarity=0.024  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDL----------------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMA  359 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la  359 (444)
                      +++++|+..|++++ .+.|+++                .+++++|.++..+|++++|+..|+++++++|++ ..+++.+|
T Consensus        52 ~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg  129 (198)
T 2fbn_A           52 NEINEAIVKYKEAL-DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKLG  129 (198)
T ss_dssp             TCHHHHHHHHHHHH-HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc-HHHHHHHH
Confidence            34555555555555 5555555                789999999999999999999999999999998 59999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHH
Q 013375          360 RILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV-ETYTHLLAAL  418 (444)
Q Consensus       360 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~  418 (444)
                      .++..+|++++|+.+|+++++++|  ++..++..++.++..+++.+++. ..|++.+...
T Consensus       130 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          130 VANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999  89999999999999999988887 6666665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=9.5e-15  Score=120.16  Aligned_cols=120  Identities=18%  Similarity=0.125  Sum_probs=111.5

Q ss_pred             hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375          269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG  348 (444)
Q Consensus       269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  348 (444)
                      ....+++.+|.++...           +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..|+++++++|
T Consensus        14 ~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~   81 (133)
T 2lni_A           14 DLALMVKNKGNECFQK-----------GDYPQAMKHYTEAI-KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP   81 (133)
T ss_dssp             CHHHHHHHHHHHHHHT-----------TCSHHHHHHHHHHH-TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred             ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            3467889999988664           57899999999999 99999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013375          349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ  403 (444)
Q Consensus       349 ~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~  403 (444)
                      ++ ..+|..+|.++...|++++|+.+++++++.+|  ++..++..++.++..+|+
T Consensus        82 ~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           82 TF-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHHHTC
T ss_pred             Cc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcC
Confidence            98 59999999999999999999999999999999  889999999999988774

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.61  E-value=2.6e-14  Score=135.74  Aligned_cols=179  Identities=12%  Similarity=0.045  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013375          197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL  276 (444)
Q Consensus       197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~  276 (444)
                      .+...+..+...|++++|+..+++++  ...|.++.....                                  ...+..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~----------------------------------~~~~~~  120 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------LQWQYY  120 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH--TTCCCCHHHHHH----------------------------------HHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHh--ccccCChHHHHH----------------------------------HHHHHH
Confidence            34445778888999999999999999  666665542100                                  011222


Q ss_pred             hhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---
Q 013375          277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---  347 (444)
Q Consensus       277 lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---  347 (444)
                      +|.++...           +++++|+..|++++ .+.+..      ..+++++|.+|..+|++++|+.+|++++++-   
T Consensus       121 l~~~~~~~-----------~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  188 (293)
T 3u3w_A          121 VAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL  188 (293)
T ss_dssp             HHHHHTTS-----------SCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcc-----------cCHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence            34433322           35677777777777 654433      2378999999999999999999999999532   


Q ss_pred             ----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q 013375          348 ----GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQ-LKGAVETYTHLLAAL  418 (444)
Q Consensus       348 ----P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~  418 (444)
                          |.. ..++.++|.++..+|+|++|+.+++++++..++.    .-..+++++|.++..+|+ +++|+..|++++.+.
T Consensus       189 ~~~~~~~-~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          189 HDNEEFD-VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             SCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             ccchhHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                222 3588999999999999999999999999887521    127899999999999995 699999999999999


Q ss_pred             Hhhhhh
Q 013375          419 QVQTKT  424 (444)
Q Consensus       419 ~~~~~~  424 (444)
                      ....+.
T Consensus       268 ~~~~~~  273 (293)
T 3u3w_A          268 DILEMH  273 (293)
T ss_dssp             HHTTCT
T ss_pred             HHhCCH
Confidence            866553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=4.4e-15  Score=122.05  Aligned_cols=101  Identities=12%  Similarity=-0.000  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      .++.+|.++.+.|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+|+++++++|  ++..+++.+|.++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence            46777777777788888888888888888877 47777788888778888888888888888877  7777777788888


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          399 LVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ..+|++++|+..|++++++.|+..
T Consensus        96 ~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC------
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCC
Confidence            788888888888888777777543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.61  E-value=1.8e-14  Score=119.74  Aligned_cols=108  Identities=13%  Similarity=-0.051  Sum_probs=102.4

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL  390 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  390 (444)
                      ..+|.++..++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..++++++.+|  ++..+
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~   79 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKA   79 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHH
Confidence            4678999999999999999999999999999999999999 59999999999999999999999999999999  89999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ++.+|.++..+|++++|+..|++++++.|++
T Consensus        80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence            9999999999999999999999999999984

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.61  E-value=6.7e-16  Score=152.67  Aligned_cols=288  Identities=14%  Similarity=0.061  Sum_probs=137.8

Q ss_pred             hhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChH
Q 013375           20 LQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAE   99 (444)
Q Consensus        20 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~   99 (444)
                      +++.|++++|.+-++++ .         .|              .++..+|..+.+.|++++|+..|.++-      ||.
T Consensus        13 l~~~~~ld~A~~fae~~-~---------~~--------------~vWs~La~A~l~~g~~~eAIdsfika~------D~~   62 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERC-N---------EP--------------AVWSQLAKAQLQKGMVKEAIDSYIKAD------DPS   62 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhC-C---------Ch--------------HHHHHHHHHHHHcCCHHHHHHHHHcCC------CHH
Confidence            45677888887766654 1         12              366788899999999999999997741      332


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 013375          100 TTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSS  179 (444)
Q Consensus       100 ~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~  179 (444)
                      ...                        ..+..+...|++++|+..+..     +.+. ..++.+...++.+|.+.|++++
T Consensus        63 ~y~------------------------~V~~~ae~~g~~EeAi~yl~~-----ark~-~~~~~i~~~Li~~Y~Klg~l~e  112 (449)
T 1b89_A           63 SYM------------------------EVVQAANTSGNWEELVKYLQM-----ARKK-ARESYVETELIFALAKTNRLAE  112 (449)
T ss_dssp             ----------------------------------------------------------------------------CHHH
T ss_pred             HHH------------------------HHHHHHHhCCCHHHHHHHHHH-----HHHh-CccchhHHHHHHHHHHhCCHHH
Confidence            211                        111234457889999986532     2232 3347788899999999999999


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013375          180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRAL  259 (444)
Q Consensus       180 A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al  259 (444)
                      +.+.++.     | +..+|..+|..+...|++++|...|.++-          .+..++. |+.++|++++|++.|+++.
T Consensus       113 ~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA~-~L~~Lg~yq~AVea~~KA~  175 (449)
T 1b89_A          113 LEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLAS-TLVHLGEYQAAVDGARKAN  175 (449)
T ss_dssp             HTTTTTC-----C-----------------CTTTHHHHHHHTT----------CHHHHHH-HHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHHH-HHHHhccHHHHHHHHHHcC
Confidence            8887752     4 44699999999999999999999999863          2333444 5667899999999999992


Q ss_pred             HHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013375          260 ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYY  339 (444)
Q Consensus       260 ~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  339 (444)
                      .          ...|...+.++...           |+++.|..+... + ..+|++   ...+...|.+.|++++|+..
T Consensus       176 ~----------~~~Wk~v~~aCv~~-----------~ef~lA~~~~l~-L-~~~ad~---l~~lv~~Yek~G~~eEai~l  229 (449)
T 1b89_A          176 S----------TRTWKEVCFACVDG-----------KEFRLAQMCGLH-I-VVHADE---LEELINYYQDRGYFEELITM  229 (449)
T ss_dssp             C----------HHHHHHHHHHHHHT-----------TCHHHHHHTTTT-T-TTCHHH---HHHHHHHHHHTTCHHHHHHH
T ss_pred             C----------chhHHHHHHHHHHc-----------CcHHHHHHHHHH-H-HhCHhh---HHHHHHHHHHCCCHHHHHHH
Confidence            1          35677766666543           578899887775 5 566655   44688899999999999999


Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375          340 AKMLLKLEGGSNLKGWLLMARILSAQ--KRYEDAETILNAALDQTGK---WEQGELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       340 ~~~al~l~P~~~~~~~~~la~~l~~~--g~~~eA~~~~~~al~~~P~---~~~~~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      +++++.++|.+ ...|..+|.++.+-  ++..|++..|...+.+.|-   -++..+|..+..++...++++.|+...
T Consensus       230 Le~aL~le~ah-~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          230 LEAALGLERAH-MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHHTTSTTCC-HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhCCcHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            99999999999 69999999998776  6788888888776655440   024577889999999999999988654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=2.5e-14  Score=116.87  Aligned_cols=120  Identities=13%  Similarity=0.029  Sum_probs=111.9

Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      ...+++.+|.++...           +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..++++++++|+
T Consensus        11 ~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A           11 EAERLKTEGNEQMKV-----------ENFEAAVHFYGKAI-ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            356778888887654           67999999999999 999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013375          350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL  404 (444)
Q Consensus       350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~  404 (444)
                      + ..+|..+|.++...|++++|+.+++++++..|  ++..++..+|.++..+|++
T Consensus        79 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 Y-SKAYGRMGLALSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTTC
T ss_pred             C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhcC
Confidence            9 59999999999999999999999999999999  8999999999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.60  E-value=5.8e-15  Score=121.30  Aligned_cols=101  Identities=17%  Similarity=0.024  Sum_probs=89.1

Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL  352 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  352 (444)
                      .++.+|..+...           |++++|+..|++++ +.+|+++.+|+.+|.++...|++++|+..|+++++++|++ .
T Consensus        19 ~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~   85 (121)
T 1hxi_A           19 NPMEEGLSMLKL-----------ANLAEAALAFEAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-I   85 (121)
T ss_dssp             CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred             hHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Confidence            466777777554           67999999999999 9999999999999999999999999999999999999999 5


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~  388 (444)
                      .+|..+|.++...|++++|+.+++++++.+|  ++.
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~  119 (121)
T 1hxi_A           86 AVHAALAVSHTNEHNANAALASLRAWLLSQP--QYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCC
Confidence            9999999999999999999999999999999  554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.60  E-value=6e-15  Score=125.63  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=87.0

Q ss_pred             HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 013375          292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL----------NAAHYYAKMLLKLEGGSNLKGWLLMARI  361 (444)
Q Consensus       292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~~la~~  361 (444)
                      ..|.+++++|++.|++++ +++|+++++|+++|.++...+++          ++|+..|++|++++|++ ..+|+++|.+
T Consensus        12 ~~r~~~feeA~~~~~~Ai-~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~a   89 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTY-KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Confidence            356788999999999999 99999999999999999999875          59999999999999999 5999999999


Q ss_pred             HHHcc-----------CHHHHHHHHHHHHhhcCCCCcHH
Q 013375          362 LSAQK-----------RYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       362 l~~~g-----------~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      |..+|           ++++|+.+|++|++++|  ++..
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P--~~~~  126 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNTH  126 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC--CCHH
Confidence            99885           89999999999999999  7653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.59  E-value=5.6e-15  Score=126.06  Aligned_cols=107  Identities=15%  Similarity=0.008  Sum_probs=95.3

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-------DLS-----ILYRLSLEYAEQRKLNAAHY  338 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-------~~~-----a~~~lg~~~~~~g~~~~A~~  338 (444)
                      +..+...|..+...           |++++|+..|++++ +++|+       +..     +|+++|.++..+|++++|+.
T Consensus        11 a~~~~~~G~~l~~~-----------g~~eeAi~~Y~kAL-~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A           11 AYLALSDAQRQLVA-----------GEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            34567788877654           67999999999999 99999       544     99999999999999999999


Q ss_pred             HHHHHHhh-------cCCCChHHH----HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375          339 YAKMLLKL-------EGGSNLKGW----LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR  392 (444)
Q Consensus       339 ~~~~al~l-------~P~~~~~~~----~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  392 (444)
                      .|++||++       +|++ ..+|    +++|.++..+|++++|+..|++|+++.|  ++..+.-
T Consensus        79 ~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p--~d~~~~~  140 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE--ERKGETP  140 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HCCSCCT
T ss_pred             HHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHH
Confidence            99999999       9999 5999    9999999999999999999999999999  6544433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.59  E-value=1.3e-14  Score=126.60  Aligned_cols=127  Identities=15%  Similarity=0.105  Sum_probs=108.4

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375          244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL  323 (444)
Q Consensus       244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l  323 (444)
                      ..|++++|+..++++++..|.+     ..+++.+|.++...           |++++|+..|++++ +++|+++.+++.+
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l   84 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWQ-----------NDYSNSLLAYRQAL-QLRGENAELYAAL   84 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHCSCHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence            4577888889999998865443     46788888888654           57899999999999 9999999999999


Q ss_pred             HHH-HHHcCCH--HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375          324 SLE-YAEQRKL--NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL  390 (444)
Q Consensus       324 g~~-~~~~g~~--~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  390 (444)
                      |.+ +...|++  ++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+++++++.+|  ++...
T Consensus        85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~  151 (177)
T 2e2e_A           85 ATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNS--PRINR  151 (177)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTSCH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCccH
Confidence            999 7899998  99999999999999998 59999999999999999999999999999999  55443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.59  E-value=1.4e-15  Score=135.70  Aligned_cols=179  Identities=10%  Similarity=-0.074  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      +....+.+......|+++++.+.++......+..+..+..+|..++..|++++|+..|++++  .+.|+++.....    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~----   77 (198)
T 2fbn_A            4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQ----   77 (198)
T ss_dssp             ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCH----
T ss_pred             cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchh----
Confidence            34455667777788889888888887777777788999999999999999999999999999  888887632100    


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL  320 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~  320 (444)
                                ......+.+          ...+++.+|.++...           +++++|+..|++++ +++|+++.++
T Consensus        78 ----------~~~~~~~~~----------~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~  125 (198)
T 2fbn_A           78 ----------ILLDKKKNI----------EISCNLNLATCYNKN-----------KDYPKAIDHASKVL-KIDKNNVKAL  125 (198)
T ss_dssp             ----------HHHHHHHHH----------HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHH
T ss_pred             ----------hHHHHHHHH----------HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCcccHHHH
Confidence                      001111111          246788899998764           67999999999999 9999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH-HHHHHH
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE-TILNAA  378 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~-~~~~~a  378 (444)
                      +++|.++..+|++++|+..|+++++++|++ ..++..++.++..+++++++. ..+.+.
T Consensus       126 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          126 YKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 599999999999998888776 333333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.58  E-value=1.9e-16  Score=160.55  Aligned_cols=159  Identities=12%  Similarity=0.037  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013375          175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF  254 (444)
Q Consensus       175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~  254 (444)
                      +++++|+..|++++..+|+.+.+|+++|.+++..|++++|+..|++++  .++|++....             .++..  
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~-------------~~~~~--  310 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIV--SWLEMEYGLS-------------EKESK--  310 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHTTCCSCC-------------HHHHH--
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHhcccccCC-------------hHHHH--
Confidence            345566666666666666666777777777777777777777777777  5666553210             00000  


Q ss_pred             HHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013375          255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN  334 (444)
Q Consensus       255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~  334 (444)
                         .+       ......+|+++|.+|...           +++++|+..|++++ +++|+++.+++++|.+|..+|+++
T Consensus       311 ---~~-------~~~~~~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~~g~a~~~~g~~~  368 (457)
T 1kt0_A          311 ---AS-------ESFLLAAFLNLAMCYLKL-----------REYTKAVECCDKAL-GLDSANEKGLYRRGEAQLLMNEFE  368 (457)
T ss_dssp             ---HH-------HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred             ---HH-------HHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHccCHH
Confidence               00       012245677777777654           56778888888888 788888888888888888888888


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       335 ~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      +|+..|+++++++|++. .++..++.++..+|++++|..
T Consensus       369 ~A~~~~~~al~l~P~~~-~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          369 SAKGDFEKVLEVNPQNK-AARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888774 778888888888887777664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.58  E-value=7.9e-14  Score=132.36  Aligned_cols=178  Identities=7%  Similarity=-0.037  Sum_probs=137.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL  231 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~  231 (444)
                      |.....+...+..+...|++++|++.|+++++..|...      ..++.+|.++...|++++|+..|++++  ...++..
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~  149 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGI  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH--TTCCCSS
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHhcCC
Confidence            44455667788899999999999999999999887755      346778999999999999999999999  6655431


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375          232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS  311 (444)
Q Consensus       232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~  311 (444)
                      ...                                  ....+++.+|.+|..+           |++++|+..|++++ .
T Consensus       150 ~~~----------------------------------~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~kal-~  183 (293)
T 2qfc_A          150 DVY----------------------------------QNLYIENAIANIYAEN-----------GYLKKGIDLFEQIL-K  183 (293)
T ss_dssp             CTT----------------------------------HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred             chH----------------------------------HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-H
Confidence            100                                  0123566666666553           45677777777776 4


Q ss_pred             h---CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHH-HHHHHHH
Q 013375          312 T---NMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDA-ETILNAA  378 (444)
Q Consensus       312 ~---~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA-~~~~~~a  378 (444)
                      +   .|++.    .+++++|.+|..+|++++|+.+|++++++.++..     ..++.++|.++..+|++++| ..++++|
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            4   34433    5889999999999999999999999999875410     37899999999999999999 7889999


Q ss_pred             HhhcC
Q 013375          379 LDQTG  383 (444)
Q Consensus       379 l~~~P  383 (444)
                      +.+..
T Consensus       264 l~~~~  268 (293)
T 2qfc_A          264 SFFFD  268 (293)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=1.5e-14  Score=124.59  Aligned_cols=119  Identities=19%  Similarity=0.137  Sum_probs=104.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST------------------NMRDLSILYRLSLEYAEQRK  332 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~------------------~P~~~~a~~~lg~~~~~~g~  332 (444)
                      +..+...|..+...           |++++|+..|++++ .+                  +|.++.+++++|.++..+|+
T Consensus        11 a~~~~~~G~~~~~~-----------~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~   78 (162)
T 3rkv_A           11 VEALRQKGNELFVQ-----------KDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD   78 (162)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            45677888887654           67999999999999 99                  77888999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHHHhCCH
Q 013375          333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG-ELLRTKAKVQLVQGQL  404 (444)
Q Consensus       333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~la~~~~~~g~~  404 (444)
                      +++|+..++++++++|++ ..+|+.+|.++..+|++++|+..|+++++++|  ++. .+...++.+....++.
T Consensus        79 ~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           79 LHEAEETSSEVLKREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHP--AAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 59999999999999999999999999999999  787 6666666666554433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.57  E-value=9.5e-14  Score=114.08  Aligned_cols=123  Identities=11%  Similarity=-0.047  Sum_probs=98.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375          190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM  269 (444)
Q Consensus       190 ~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~  269 (444)
                      ..|.++.+|+.+|.++...|++++|+..|++++  ..+|+++.++..+|.++.                           
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~---------------------------   61 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAI--KRNPKDAKLYSNRAACYT---------------------------   61 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHT---------------------------
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHH---------------------------
Confidence            457788889999999999999999999999999  788887766655444331                           


Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                                   .           .+++++|+..|++++ +.+|+++.+++++|.++...|++++|+..|+++++++|+
T Consensus        62 -------------~-----------~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           62 -------------K-----------LLEFQLALKDCEECI-QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             -------------T-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             -------------H-----------hccHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence                         1           135678888888888 888888888888888888888899999999988888888


Q ss_pred             CChHHHHHHHHHHHHccC
Q 013375          350 SNLKGWLLMARILSAQKR  367 (444)
Q Consensus       350 ~~~~~~~~la~~l~~~g~  367 (444)
                      +. .++..++.++..+|+
T Consensus       117 ~~-~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          117 CK-EAADGYQRCMMAQYN  133 (133)
T ss_dssp             GT-HHHHHHHHHHHHHTC
T ss_pred             ch-HHHHHHHHHHHHhcC
Confidence            84 888888888877664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.57  E-value=9.1e-14  Score=118.97  Aligned_cols=133  Identities=14%  Similarity=0.048  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375          195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN  274 (444)
Q Consensus       195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~  274 (444)
                      +..|+.+|.++...|++++|+..|++++  ..+|+++.++..                                      
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~--------------------------------------   52 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAI--ELNPSNAIYYGN--------------------------------------   52 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHH--------------------------------------
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCChHHHHH--------------------------------------
Confidence            4567777777777777777777777777  666666544433                                      


Q ss_pred             HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375          275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG  354 (444)
Q Consensus       275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  354 (444)
                        +|.++..           .|++++|+..|++++ .++|+++.+++++|.++...|++++|+..|+++++++|++ ..+
T Consensus        53 --~a~~~~~-----------~~~~~~A~~~~~~a~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~  117 (166)
T 1a17_A           53 --RSLAYLR-----------TECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDA  117 (166)
T ss_dssp             --HHHHHHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHH
T ss_pred             --HHHHHHH-----------cCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHH
Confidence              3333322           245778888888888 8888888888888888888888888888888888888887 477


Q ss_pred             HHHHHH--HHHHccCHHHHHHHHHHHHhhc
Q 013375          355 WLLMAR--ILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       355 ~~~la~--~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      +..++.  .+...|++++|+..+.++....
T Consensus       118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          118 KMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            754444  4778888888888888876554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=3.5e-14  Score=118.02  Aligned_cols=117  Identities=15%  Similarity=0.100  Sum_probs=105.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +..++.+|.++...           |++++|+..|++++ .++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         9 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVG-----------RKYPEAAACYGRAI-TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            56788899888764           67999999999999 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhC
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-----QGELLRTKAKVQLVQG  402 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~~~la~~~~~~g  402 (444)
                       ..+|..+|.++..+|++++|+.+|+++++..|  +     +..++..+..+.....
T Consensus        77 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           77 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCCCTTHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh--hHHHHHHHHHHHHHHHHHHHHH
Confidence             59999999999999999999999999999999  5     5666666666654443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.55  E-value=1.9e-13  Score=110.52  Aligned_cols=117  Identities=20%  Similarity=0.241  Sum_probs=107.7

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..+++.+|.++...           +++++|++.|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|++
T Consensus         9 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence            46778888887654           67899999999999 9999999999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG  402 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g  402 (444)
                       ..+|..+|.++...|++++|+.+++++++.+|  ++..++..+|.++..+|
T Consensus        77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcc
Confidence             59999999999999999999999999999999  89999999999887765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=1.6e-13  Score=109.87  Aligned_cols=113  Identities=17%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..+++.+|.++...           |++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..++++++++|++
T Consensus         4 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (118)
T 1elw_A            4 VNELKEKGNKALSV-----------GNIDDALQCYSEAI-KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   71 (118)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence            45677788877654           67999999999999 9999999999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                       ..+|..+|.++...|++++|+.+++++++.+|  ++..++..++.+.
T Consensus        72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~  116 (118)
T 1elw_A           72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA--NNPQLKEGLQNME  116 (118)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHhh
Confidence             59999999999999999999999999999999  8999999888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.55  E-value=4.9e-15  Score=150.16  Aligned_cols=153  Identities=12%  Similarity=0.023  Sum_probs=125.0

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC--------
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--------  316 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~--------  316 (444)
                      .+++++|+..++++++..+     ..+.++..+|.++...           +++++|+..|++++ +++|++        
T Consensus       247 l~~~~~A~~~~~~~~~~~~-----~~a~~~~~~G~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~  309 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKL-----EQAAIVKEKGTVYFKG-----------GKYMQAVIQYGKIV-SWLEMEYGLSEKES  309 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHH-----HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHTTCCSCCHHHH
T ss_pred             hhhcccCcchhhcCHHHHH-----HHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHhcccccCChHHH
Confidence            3455666666666665322     1356788888887654           57889999999999 899988        


Q ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          317 -------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       317 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                             ..+++++|.++.++|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+..|++|++++|  ++..
T Consensus       310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~  386 (457)
T 1kt0_A          310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKA  386 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHH
Confidence                   6999999999999999999999999999999999 59999999999999999999999999999999  8999


Q ss_pred             HHHHHHHHHHHhCCHHHHHH-HHHHHHHH
Q 013375          390 LLRTKAKVQLVQGQLKGAVE-TYTHLLAA  417 (444)
Q Consensus       390 ~~~~la~~~~~~g~~~~A~~-~~~~al~l  417 (444)
                      ++..++.++..+|++++|.. .|++.+.-
T Consensus       387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          387 ARLQISMCQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999998874 45555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.54  E-value=1.1e-14  Score=115.75  Aligned_cols=107  Identities=14%  Similarity=0.118  Sum_probs=101.2

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC--cHH
Q 013375          312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE--QGE  389 (444)
Q Consensus       312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~--~~~  389 (444)
                      ++|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+++++++..|  +  +..
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~   77 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-SKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKD   77 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHH
Confidence            479999999999999999999999999999999999998 59999999999999999999999999999999  8  899


Q ss_pred             HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhh
Q 013375          390 LLRTKAKVQLVQ-GQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       390 ~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~~  421 (444)
                      +++.+|.++..+ |++++|++.+++++...|..
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            999999999999 99999999999999877643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.53  E-value=3e-15  Score=152.47  Aligned_cols=136  Identities=12%  Similarity=0.005  Sum_probs=118.3

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +.++..+|.++..+           |++++|++.|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         6 a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            6 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HTTSSSSSSSTTTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            34566677777654           67999999999999 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHH
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV--QLVQGQLKGAVETYT-----------HLLAA  417 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~l  417 (444)
                       ..+|.++|.++..+|++++|+..|+++++.+|  ++..++..++.+  +..+|++++|++.|+           +++++
T Consensus        74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~  150 (477)
T 1wao_1           74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTI  150 (477)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCC
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccc
Confidence             59999999999999999999999999999999  888899999988  889999999999999           66665


Q ss_pred             HHhh
Q 013375          418 LQVQ  421 (444)
Q Consensus       418 ~~~~  421 (444)
                      .|+.
T Consensus       151 ~~~~  154 (477)
T 1wao_1          151 EDEY  154 (477)
T ss_dssp             CTTC
T ss_pred             cccc
Confidence            5544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.53  E-value=1.2e-14  Score=118.29  Aligned_cols=100  Identities=14%  Similarity=0.072  Sum_probs=87.9

Q ss_pred             HhhHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375          295 ATRQAKALQALVSAARST---NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                      .|++++|+..|++++ ++   +|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.++|.++..+|++++|
T Consensus         3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence            467899999999999 99   69999999999999999999999999999999999999 59999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      +..+++++...|  ++..+......+.
T Consensus        81 ~~~~~~al~~~p--~~~~~~~~~~ai~  105 (117)
T 3k9i_A           81 VELLLKIIAETS--DDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHTHHHHH
T ss_pred             HHHHHHHHHhCC--CcHHHHHHHHHHH
Confidence            999999999999  7877654443333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.52  E-value=9.6e-14  Score=119.54  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------cCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKL------------------EGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      +..+..+|..+...|++++|+..|++++.+                  +|.+ ..+|.++|.++..+|+|++|+..++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            567899999999999999999999999999                  8887 599999999999999999999999999


Q ss_pred             HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ++++|  ++..+|+.+|.++..+|++++|+..|++++++.|++.
T Consensus        90 l~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           90 LKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            99999  8999999999999999999999999999999999876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.52  E-value=1.7e-13  Score=112.45  Aligned_cols=116  Identities=14%  Similarity=0.095  Sum_probs=96.9

Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      +++.+|.++...           |++++|+..|++++ ..+|+++   .+++.+|.++...|++++|+..|++++..+|+
T Consensus         4 ~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKN-----------GKYDDASQLFLSFL-ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            456667666543           67899999999999 9999998   79999999999999999999999999999999


Q ss_pred             C---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013375          350 S---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ  403 (444)
Q Consensus       350 ~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~  403 (444)
                      +   + .+++.+|.++..+|++++|+.+|+++++..|  ++..+...+..+....++
T Consensus        72 ~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           72 HDKAA-GGLLKLGLSQYGEGKNTEAQQTLQQVATQYP--GSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             STTHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TSHHHHHHHHHHHHHC--
T ss_pred             CcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHhh
Confidence            7   4 7799999999999999999999999999999  787777766666554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.51  E-value=4.2e-13  Score=127.31  Aligned_cols=170  Identities=10%  Similarity=0.004  Sum_probs=119.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH------HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh------HH
Q 013375          166 HLSFAFSIAGDLSSLATQIEELLPGIINRKE------RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PA  233 (444)
Q Consensus       166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~------~a  233 (444)
                      .....+...|++++|+..|++++...+..++      .++.+|.++...|++++|+..|++++  .+.++..      .+
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al--~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH--HTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHhcccccHHHHHHH
Confidence            3466788999999999999999998887766      33358999999999999999999999  5544322      24


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375          234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN  313 (444)
Q Consensus       234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  313 (444)
                      +..+|.++ ...|++++|+.+|+++++.....+                                            ...
T Consensus       158 ~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------------~~~  192 (293)
T 3u3w_A          158 ENAIANIY-AENGYLKKGIDLFEQILKQLEALH--------------------------------------------DNE  192 (293)
T ss_dssp             HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSS--------------------------------------------CCH
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhcc--------------------------------------------cch
Confidence            56666554 557899999999999997431100                                            011


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccC-HHHHHHHHHHHHhhc
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKR-YEDAETILNAALDQT  382 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~-~~eA~~~~~~al~~~  382 (444)
                      |..+.+++++|.+|..+|++++|+.++++++++.++..     ..++.++|.++..+|+ +++|+.+|++|+.+.
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            22245566777777777777777777777776654431     2567777777777773 577777777777554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.50  E-value=2.3e-14  Score=139.41  Aligned_cols=138  Identities=12%  Similarity=0.086  Sum_probs=90.2

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-----------------SILYRLSLEYAEQRKL  333 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~-----------------~a~~~lg~~~~~~g~~  333 (444)
                      +..+..+|..+...           +++++|+..|++++ .++|++.                 .+++++|.++..+|++
T Consensus       179 a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~  246 (338)
T 2if4_A          179 ADRRKMDGNSLFKE-----------EKLEEAMQQYEMAI-AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY  246 (338)
T ss_dssp             HHHHHHHHHHTCSS-----------SCCHHHHHHHHHHH-HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            45677888887664           57899999999999 9999988                 4999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCCHHHHHHHHH
Q 013375          334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQLKGAVETYT  412 (444)
Q Consensus       334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~-~~~~g~~~~A~~~~~  412 (444)
                      ++|+..|+++++++|++ ..+|+++|.++..+|++++|+.+|+++++++|  ++..++..++.+ ....+..+++...|+
T Consensus       247 ~~A~~~~~~al~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          247 DEAIGHCNIVLTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred             HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 59999999999999999999999999999999  899999999998 455677888999999


Q ss_pred             HHHHHHHhhhh
Q 013375          413 HLLAALQVQTK  423 (444)
Q Consensus       413 ~al~l~~~~~~  423 (444)
                      +++...|++..
T Consensus       324 ~~l~~~p~~~~  334 (338)
T 2if4_A          324 GIFKGKDEGGA  334 (338)
T ss_dssp             -----------
T ss_pred             HhhCCCCCCCC
Confidence            99999987654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.50  E-value=1.8e-13  Score=121.42  Aligned_cols=163  Identities=11%  Similarity=-0.005  Sum_probs=119.4

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh------hCCCCHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS------TNMRDLS  318 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~------~~P~~~~  318 (444)
                      .|++++|+..++.+.. .+.    ....++..+|.++...           |++++|+..|++++ .      ..|..+.
T Consensus         5 ~g~~~~A~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~   67 (203)
T 3gw4_A            5 AHDYALAERQAQALLA-HPA----TASGARFMLGYVYAFM-----------DRFDEARASFQALQ-QQAQKSGDHTAEHR   67 (203)
T ss_dssp             --CHHHHHHHHHHHHT-STT----THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHTTCCHHHHHH
T ss_pred             cccHHHHHHHHHHhcC-ChH----HHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-HHHHHcCCcHHHHH
Confidence            4566666664433322 221    1355667777776554           46777888888777 6      4556677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----H
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----G  388 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~----~  388 (444)
                      +++++|.++...|++++|+..+++++++   .|++   ...++.++|.++..+|++++|+.+++++++..++..+    .
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  147 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA  147 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence            8899999999999999999999999998   3422   1357889999999999999999999999976431112    3


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      .++.++|.++..+|++++|+..+++++++.+...+.
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  183 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS  183 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            446889999999999999999999999998876553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.50  E-value=1.3e-14  Score=141.07  Aligned_cols=157  Identities=10%  Similarity=0.051  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375          192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES  271 (444)
Q Consensus       192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~  271 (444)
                      +.....|+.+|..++..|++++|+..|++++  .+.|++..         +...++.+++...+              ..
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~---------~~~~~~~~~~~~~l--------------~~  230 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAI--AYMGDDFM---------FQLYGKYQDMALAV--------------KN  230 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHH--HHSCHHHH---------HTCCHHHHHHHHHH--------------HT
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHhccchh---------hhhcccHHHHHHHH--------------HH
Confidence            4456789999999999999999999999999  88887642         22344554544322              13


Q ss_pred             HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                      .+++++|.++...           +++++|+..|++++ +++|+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus       231 ~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          231 PCHLNIAACLIKL-----------KRYDEAIGHCNIVL-TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             HHHHHHHHHHHTT-----------TCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            4789999999765           57899999999999 99999999999999999999999999999999999999995


Q ss_pred             hHHHHHHHHHH-HHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375          352 LKGWLLMARIL-SAQKRYEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       352 ~~~~~~la~~l-~~~g~~~eA~~~~~~al~~~P~~~~~  388 (444)
                       .++..++.+. ...+..+++...|.+++...|  ++.
T Consensus       299 -~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p--~~~  333 (338)
T 2if4_A          299 -AIRRELRALAEQEKALYQKQKEMYKGIFKGKD--EGG  333 (338)
T ss_dssp             --------------------------------------
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCC
Confidence             9999999884 455778889999999999999  553

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.50  E-value=5e-13  Score=108.00  Aligned_cols=110  Identities=19%  Similarity=0.264  Sum_probs=100.3

Q ss_pred             hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          311 STNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       311 ~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      ..+|.+ +.+++.+|.++...|++++|+..|++++..+|++ ..+|..+|.++...|++++|+.++++++...|  ++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~   78 (125)
T 1na0_A            2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE   78 (125)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred             CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHH
Confidence            467877 8899999999999999999999999999999998 59999999999999999999999999999999  8999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       390 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +++.+|.++...|++++|+..|++++++.|+...
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  112 (125)
T 1na0_A           79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE  112 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence            9999999999999999999999999999886654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.7e-13  Score=113.67  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=90.9

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ  387 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~  387 (444)
                      ..+|+++..++.+|..+...|++++|+..|+++++++|++   . .+|..+|.++...|++++|+.+++++++.+|  ++
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~   98 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA-VLHRNRAACHLKLEDYDKAETEASKAIEKDG--GD   98 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CC
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cC
Confidence            4567888888888888888888888888888888888875   4 7788888888888888888888888888888  77


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ..+++.+|.++..+|++++|+..|++++++.|++..
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  134 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV  134 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence            888888888888888888888888888888776554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=2.5e-13  Score=110.75  Aligned_cols=110  Identities=13%  Similarity=-0.011  Sum_probs=103.7

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL  390 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  390 (444)
                      ..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++...|++++|+.++++++...|  ++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~   82 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKA   82 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHH
Confidence            5667888999999999999999999999999999999998 59999999999999999999999999999999  89999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ++.+|.++...|++++|+..|++++++.|+...
T Consensus        83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  115 (131)
T 2vyi_A           83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNET  115 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence            999999999999999999999999999886544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.48  E-value=2.2e-13  Score=111.82  Aligned_cols=109  Identities=12%  Similarity=0.092  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELL  391 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~  391 (444)
                      +.+++.+|.++...|++++|+..|+++++.+|+++.  .+++.+|.++..+|++++|+.+|+++++..|  ++   ..++
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~   79 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--THDKAAGGL   79 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSTTHHHHH
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--CCcccHHHH
Confidence            346889999999999999999999999999999831  6999999999999999999999999999999  77   8899


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 013375          392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS  427 (444)
Q Consensus       392 ~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~  427 (444)
                      +.+|.++..+|++++|+..|+++++..|+.......
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            999999999999999999999999999977665443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.48  E-value=5.8e-13  Score=126.27  Aligned_cols=208  Identities=14%  Similarity=0.021  Sum_probs=153.1

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC--CChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013375          180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPALLIASKICGEYPDLAEEGATFASR  257 (444)
Q Consensus       180 A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P--~~~~a~~~~~~~~~~~~~~~~eA~~~~~~  257 (444)
                      |+..|++.+...+.+..+++.+|.++...|++++|++.+.+++  ..+|  ++.+++...+.+++. .|+.+.|.+.+++
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~  161 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDN  161 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence            6788888888766677777889999999999999999999998  7776  788888777777665 6889999999998


Q ss_pred             HHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHH
Q 013375          258 ALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNA  335 (444)
Q Consensus       258 al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~g~~~~  335 (444)
                      +.+. +++..........++..++.....       ..+++.+|+..|+++. ...|+  ++..+++   ++..+|++++
T Consensus       162 ~~~~-~~d~~~~~d~~l~~Laea~v~l~~-------g~~~~q~A~~~f~El~-~~~p~~~~~~lLln---~~~~~g~~~e  229 (310)
T 3mv2_B          162 YTNA-IEDTVSGDNEMILNLAESYIKFAT-------NKETATSNFYYYEELS-QTFPTWKTQLGLLN---LHLQQRNIAE  229 (310)
T ss_dssp             HHHH-SCHHHHHHHHHHHHHHHHHHHHHH-------TCSTTTHHHHHHHHHH-TTSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred             HHhc-CccccccchHHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHH-HhCCCcccHHHHHH---HHHHcCCHHH
Confidence            8774 331000001223333333222110       0136889999999998 88887  4556666   8999999999


Q ss_pred             HHHHHHHHHhh----------cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013375          336 AHYYAKMLLKL----------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK  405 (444)
Q Consensus       336 A~~~~~~al~l----------~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~  405 (444)
                      |...+++++++          +|+++ .++.++..+...+|+  +|..+++++.+.+|  +++.+.-..    .+...||
T Consensus       230 Ae~~L~~l~~~~p~~~~k~~~~p~~~-~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P--~hp~i~d~~----~k~~~Fd  300 (310)
T 3mv2_B          230 AQGIVELLLSDYYSVEQKENAVLYKP-TFLANQITLALMQGL--DTEDLTNQLVKLDH--EHAFIKHHQ----EIDAKFD  300 (310)
T ss_dssp             HHHHHHHHHSHHHHTTTCHHHHSSHH-HHHHHHHHHHHHTTC--TTHHHHHHHHHTTC--CCHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHhcccccccccCCCCCH-HHHHHHHHHHHHhCh--HHHHHHHHHHHhCC--CChHHHHHH----HHHHHHH
Confidence            99999998887          58884 999888888888897  99999999999999  777654432    2334455


Q ss_pred             HHHHHH
Q 013375          406 GAVETY  411 (444)
Q Consensus       406 ~A~~~~  411 (444)
                      ++..-|
T Consensus       301 ~~~~ky  306 (310)
T 3mv2_B          301 ELVRKY  306 (310)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            554433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=5e-13  Score=111.99  Aligned_cols=115  Identities=13%  Similarity=0.034  Sum_probs=105.5

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLE  347 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  347 (444)
                      ...++.+|..+...           +++++|+..|++++ +.+|++   +.+++++|.++...|++++|+..|++++.++
T Consensus        28 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           28 VEQLRKEGNELFKC-----------GDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            56778888887664           67999999999999 999998   8999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013375          348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV  400 (444)
Q Consensus       348 P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~  400 (444)
                      |++ ..+|..+|.++..+|++++|+.+|+++++.+|  ++..++..++.+...
T Consensus        96 ~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           96 GGD-VKALYRRSQALEKLGRLDQAVLDLQRCVSLEP--KNKVFQEALRNISGP  145 (148)
T ss_dssp             SCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHCS
T ss_pred             ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHhh
Confidence            999 59999999999999999999999999999999  888988888777543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=4.1e-13  Score=107.51  Aligned_cols=105  Identities=13%  Similarity=0.034  Sum_probs=99.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      .+.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++...|++++|+..++++++..|  ++..+++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a   79 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHH
Confidence            46789999999999999999999999999999998 59999999999999999999999999999999  8999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          396 KVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       396 ~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .++..+|++++|+..|++++++.|+...
T Consensus        80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~  107 (118)
T 1elw_A           80 AALEFLNRFEEAKRTYEEGLKHEANNPQ  107 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999999999886654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.48  E-value=3.5e-15  Score=152.06  Aligned_cols=162  Identities=14%  Similarity=0.059  Sum_probs=99.6

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS  324 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg  324 (444)
                      .|++++|+.+|+++++..|.+     ..+++++|.++..+           +++++|++.|++++ +++|+++.+++++|
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~l~p~~~~~~~~lg   81 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSN-----AIYYGNRSLAYLRT-----------ECYGYALGDATRAI-ELDKKYIKGYYRRA   81 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HSCTTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence            344444444444444432221     34555556555443           45778888888888 88888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH--HHHccCHHHHHHHHH-----------HHHhhcCCCC-----
Q 013375          325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI--LSAQKRYEDAETILN-----------AALDQTGKWE-----  386 (444)
Q Consensus       325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~--l~~~g~~~eA~~~~~-----------~al~~~P~~~-----  386 (444)
                      .++..+|++++|++.|+++++++|++. .++..++.+  +..+|++++|+..++           ++++..|++.     
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  160 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE  160 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCT-THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence            888888888888888888888888874 788777777  777788888888888           7777766310     


Q ss_pred             ----cHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhhhhh
Q 013375          387 ----QGELLRTKAKVQLVQGQ--LKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       387 ----~~~~~~~la~~~~~~g~--~~~A~~~~~~al~l~~~~~~~  424 (444)
                          ....+..+...+...+.  .++....+.++.++.....+.
T Consensus       161 ~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~  204 (477)
T 1wao_1          161 DGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTL  204 (477)
T ss_dssp             GGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSE
T ss_pred             cccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCe
Confidence                01111122222223333  345556788888887776653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.45  E-value=4.3e-13  Score=131.99  Aligned_cols=125  Identities=14%  Similarity=0.047  Sum_probs=115.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS----------------TNMRDLSILYRLSLEYAEQRKLN  334 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~----------------~~P~~~~a~~~lg~~~~~~g~~~  334 (444)
                      +..+..+|..+...           +++++|+..|++++ +                ++|.++.+++++|.++..+|+++
T Consensus       223 a~~~~~~g~~~~~~-----------g~~~~Ai~~y~kAl-~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~  290 (370)
T 1ihg_A          223 SEDLKNIGNTFFKS-----------QNWEMAIKKYTKVL-RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ  290 (370)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence            34577788877654           67999999999999 8                88999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013375          335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET  410 (444)
Q Consensus       335 ~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~  410 (444)
                      +|+..|+++++++|++ ..+|+.+|.++..+|++++|+..|++|++++|  ++..++..++.++..+++.+++...
T Consensus       291 ~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          291 GAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCchh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 59999999999999999999999999999999  8999999999999999988887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=9.8e-13  Score=131.06  Aligned_cols=206  Identities=9%  Similarity=-0.021  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH-----------------HHHHHHHHHHHHCCCchHHHHHHHHhhcC
Q 013375          162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-----------------ERYHILALCYYGAGEDLVALNLLRTLLSG  224 (444)
Q Consensus       162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~l~~~g~~~~A~~~~~~al~~  224 (444)
                      .....-|..+...|++++|++.|.++++.+|...                 .++.++|.+|...|++++|+..|.+++  
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~--   82 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST--   82 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH--
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence            3445567778888999999999999998887754                 357888999999999999999998888  


Q ss_pred             CCCCCChHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhH
Q 013375          225 SEDPKCLPAL-----LIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQ  298 (444)
Q Consensus       225 ~~~P~~~~a~-----~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~  298 (444)
                      ...+....+.     ....+.++...|..++|+.++++++...... .......++..+|.+|...           |++
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~  151 (434)
T 4b4t_Q           83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK-----------KQY  151 (434)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH-----------TCH
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc-----------cCh
Confidence            5544432221     1112233444566666666666666542211 1112233444444444332           334


Q ss_pred             HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcc
Q 013375          299 AKALQALVSAARST------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQK  366 (444)
Q Consensus       299 ~eA~~~~~~al~~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~~la~~l~~~g  366 (444)
                      ++|+..+++++ ..      .|...+++..+|.++...|++++|...+++++.+.|..+      ...+..+|.++...|
T Consensus       152 ~~A~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~  230 (434)
T 4b4t_Q          152 KDSLALINDLL-REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK  230 (434)
T ss_dssp             HHHHHHHHHHH-HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            45555554444 32      222233444445555555555555555555544432210      123334444444444


Q ss_pred             CHHHHHHHHHHHHhh
Q 013375          367 RYEDAETILNAALDQ  381 (444)
Q Consensus       367 ~~~eA~~~~~~al~~  381 (444)
                      +|++|..+|.++++.
T Consensus       231 ~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          231 DYKTAFSYFFESFES  245 (434)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            555555544444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.45  E-value=6.7e-13  Score=108.33  Aligned_cols=116  Identities=13%  Similarity=0.175  Sum_probs=97.7

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +.+++.+|.++...           |++++|+..|++++ ..+|+++.+++++|.++...|++++|+..|++++.++|++
T Consensus         4 ~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            4 ALKEKELGNDAYKK-----------KDFDTALKHYDKAK-ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            45677788777654           57899999999999 9999999999999999999999999999999999998875


Q ss_pred             -------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375          351 -------NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG  402 (444)
Q Consensus       351 -------~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g  402 (444)
                             . .+|..+|.++...|++++|+.+|+++++..|  + ...+..++.+....+
T Consensus        72 ~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           72 REDYRQIA-KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--T-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             TTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHHHH
T ss_pred             chhHHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHHH
Confidence                   4 7889999999999999999999999999888  3 667777777665543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.45  E-value=1.1e-12  Score=116.31  Aligned_cols=165  Identities=13%  Similarity=0.011  Sum_probs=117.8

Q ss_pred             HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013375          171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE  250 (444)
Q Consensus       171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e  250 (444)
                      +...|++++|.+.++......+..+.+++.+|.++...|++++|+..|++++  .+.               ...+.   
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~---------------~~~~~---   61 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ--QQA---------------QKSGD---   61 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHH---------------HTTCC---
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHH---------------HHcCC---
Confidence            3456777777774444444333567777777777777777777777777777  211               01111   


Q ss_pred             HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh---CCCC----HHHHHHH
Q 013375          251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---NMRD----LSILYRL  323 (444)
Q Consensus       251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~---~P~~----~~a~~~l  323 (444)
                                      ......++..+|.++...           |++++|+..|++++ ++   .|++    ..+++++
T Consensus        62 ----------------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~l  113 (203)
T 3gw4_A           62 ----------------HTAEHRALHQVGMVERMA-----------GNWDAARRCFLEER-ELLASLPEDPLAASANAYEV  113 (203)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHcCccHHHHHHHHHHH
Confidence                            112346777888887654           57899999999999 87   4433    4678999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          324 SLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       324 g~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      |.++...|++++|+..+++++++.+...     ..++.++|.++..+|++++|+.++++++++..
T Consensus       114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754321     23468999999999999999999999998765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.45  E-value=7.2e-13  Score=112.03  Aligned_cols=140  Identities=14%  Similarity=0.008  Sum_probs=118.7

Q ss_pred             hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375          270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKML  343 (444)
Q Consensus       270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~~~a  343 (444)
                      ...++..+|.++...           +++++|+..|++++ .+.|...      .++.++|.++...|++++|+..++++
T Consensus         8 ~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788888888664           57899999999999 8866543      48899999999999999999999999


Q ss_pred             HhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          344 LKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       344 l~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      +++.+...     ..++..+|.++..+|++++|+.+++++++..++.    ....++..+|.++..+|++++|+..++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99876531     3678899999999999999999999999774311    23577899999999999999999999999


Q ss_pred             HHHHHhh
Q 013375          415 LAALQVQ  421 (444)
Q Consensus       415 l~l~~~~  421 (444)
                      +++.++.
T Consensus       156 ~~~~~~~  162 (164)
T 3ro3_A          156 LEISREV  162 (164)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.43  E-value=7.3e-13  Score=108.08  Aligned_cols=104  Identities=12%  Similarity=0.097  Sum_probs=97.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------
Q 013375          314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------  387 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~------  387 (444)
                      |..+.+++.+|.++...|++++|+..|++++.++|++ ..++..+|.++...|++++|+.++++++...|  ++      
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~   77 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--ENREDYRQ   77 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HSTTCHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--ccchhHHH
Confidence            4457889999999999999999999999999999998 59999999999999999999999999999988  65      


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          388 -GELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       388 -~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                       ..+++.+|.++...|++++|+..|++++++.|+
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence             899999999999999999999999999998763

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.42  E-value=1.3e-12  Score=105.49  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      +|+..|++++ +.+|+++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|++++
T Consensus         3 ~a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5889999999 9999999999999999999999999999999999999999 5999999999999999999999999999


Q ss_pred             hhcC
Q 013375          380 DQTG  383 (444)
Q Consensus       380 ~~~P  383 (444)
                      +..|
T Consensus        81 ~~~~   84 (115)
T 2kat_A           81 AAAQ   84 (115)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            9988

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.42  E-value=3e-13  Score=115.14  Aligned_cols=93  Identities=11%  Similarity=0.015  Sum_probs=86.1

Q ss_pred             HHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY----------EDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       328 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      .+.+++++|++.++++++++|++ .++|.++|.++..++++          ++|+..|++||+++|  ++..+|+++|.+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~-aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLD-ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence            45678999999999999999999 59999999999999886          599999999999999  899999999999


Q ss_pred             HHHhC-----------CHHHHHHHHHHHHHHHHhhhh
Q 013375          398 QLVQG-----------QLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       398 ~~~~g-----------~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +..+|           ++++|+.+|++++++.|++..
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            99885           899999999999999997643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=3.4e-13  Score=109.59  Aligned_cols=93  Identities=16%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             HcCCHHHHHHHHHHHHhh---cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013375          329 EQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK  405 (444)
Q Consensus       329 ~~g~~~~A~~~~~~al~l---~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~  405 (444)
                      .+|++++|+..|++++++   +|++ ..+|.++|.++..+|++++|+.+++++++.+|  ++..+++++|.++..+|+++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~   78 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYE   78 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHH
Confidence            368999999999999999   7988 59999999999999999999999999999999  89999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 013375          406 GAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       406 ~A~~~~~~al~l~~~~~~~  424 (444)
                      +|+..|++++++.|+....
T Consensus        79 ~A~~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           79 QGVELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhCCCcHHH
Confidence            9999999999999877654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.40  E-value=4.8e-12  Score=119.94  Aligned_cols=177  Identities=14%  Similarity=-0.041  Sum_probs=142.4

Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC--
Q 013375          153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII--NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--  228 (444)
Q Consensus       153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P--  228 (444)
                      .+...+.+..++..+|.++...|++++|+..+.+.+..+|  ++.+++..++.++..+||.+.|.+.+++..  +.+|  
T Consensus        92 l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~--~~~~d~  169 (310)
T 3mv2_B           92 LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT--NAIEDT  169 (310)
T ss_dssp             TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSCHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCccc
Confidence            3444456677788999999999999999999999999997  899999999999999999999999999998  7899  


Q ss_pred             ----CChHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375          229 ----KCLPALLIASKICG-EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ  303 (444)
Q Consensus       229 ----~~~~a~~~~~~~~~-~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~  303 (444)
                          +.+...+..+.+.+ ...+++.+|...|+++.+..|..   .....+++   ++.           +.|++++|.+
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~---~~~~lLln---~~~-----------~~g~~~eAe~  232 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW---KTQLGLLN---LHL-----------QQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH---HHHHHHHH---HHH-----------HHTCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc---ccHHHHHH---HHH-----------HcCCHHHHHH
Confidence                34444444454333 23458999999999988754320   01122222   443           3578999999


Q ss_pred             HHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375          304 ALVSAARST----------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       304 ~~~~al~~~----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  351 (444)
                      .++.++ +.          +|+|++++.|+..+...+|+  +|.++++++..++|+++
T Consensus       233 ~L~~l~-~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          233 IVELLL-SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHHH-SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HHHHHH-HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            999888 77          59999999999999999998  99999999999999996

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.40  E-value=9.6e-13  Score=104.37  Aligned_cols=105  Identities=10%  Similarity=-0.013  Sum_probs=97.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC--ChHHH
Q 013375          157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK--CLPAL  234 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~--~~~a~  234 (444)
                      +|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++  ..+|+  ++.++
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~   79 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI--NVIEDEYNKDVW   79 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTSCCTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCcccchHHHH
Confidence            588899999999999999999999999999999999999999999999999999999999999999  89999  99998


Q ss_pred             HHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Q 013375          235 LIASKICGEYP-DLAEEGATFASRALECLGD  264 (444)
Q Consensus       235 ~~~~~~~~~~~-~~~~eA~~~~~~al~~~~~  264 (444)
                      ..++.++ ... |++++|+.++++++...|+
T Consensus        80 ~~l~~~~-~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           80 AAKADAL-RYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHH-TTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHH-HHHhCCHHHHHHHHHHHhhcccC
Confidence            8887765 568 8999999999999996554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.39  E-value=2.8e-11  Score=127.57  Aligned_cols=230  Identities=9%  Similarity=-0.005  Sum_probs=186.8

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHH-HHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013375          178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL-NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS  256 (444)
Q Consensus       178 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~-~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~  256 (444)
                      +.....|++++...|.+++.|+.+|..+...|+.++|. .+|++|+  ...|++...++..+.+. ...|++++|...|+
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi--~~~P~s~~Lwl~~a~~e-e~~~~~e~aR~iye  402 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ--QCIPNSAVLAFSLSEQY-ELNTKIPEIETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhCCHHHHHHHHH
Confidence            44567899999999999999999999999999999997 9999999  89999988777666654 44688999999999


Q ss_pred             HHHHHcC----------CCcch-------hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh-CCCCHH
Q 013375          257 RALECLG----------DGCDQ-------MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDLS  318 (444)
Q Consensus       257 ~al~~~~----------~~~~~-------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~P~~~~  318 (444)
                      ++++..+          |..+.       ....+|.......           .+.+..+.|...|.+|+ +. .+..+.
T Consensus       403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e-----------rR~~~l~~AR~vf~~A~-~~~~~~~~~  470 (679)
T 4e6h_A          403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM-----------KRIQGLAASRKIFGKCR-RLKKLVTPD  470 (679)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHH-HTGGGSCTH
T ss_pred             HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhcCCCChH
Confidence            9998531          11000       0122344333332           23467899999999999 77 556678


Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK  396 (444)
Q Consensus       319 a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~la~  396 (444)
                      +|...|.+..+.+ +++.|.+.|+++++..|++ ...|...+..+...|+.+.|..+|++|+...|+. ....+|.....
T Consensus       471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~  549 (679)
T 4e6h_A          471 IYLENAYIEYHISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF  549 (679)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            8888787777665 5999999999999999998 4999999999999999999999999999988711 25678888899


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          397 VQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       397 ~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .....|..+.+...++++++..|+...
T Consensus       550 fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          550 FESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            999999999999999999999997644

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=7.6e-13  Score=105.40  Aligned_cols=95  Identities=15%  Similarity=0.034  Sum_probs=87.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------HH
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------GE  389 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~------~~  389 (444)
                      ++.+++.+|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..++++++.+|  ++      ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS--TAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--STTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CccHHHHHHH
Confidence            56889999999999999999999999999999999 59999999999999999999999999999999  77      88


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          390 LLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       390 ~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      +++.+|.++..+|++++|+..+++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHH
Confidence            999999999999988877765543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.32  E-value=2.9e-11  Score=127.46  Aligned_cols=217  Identities=7%  Similarity=-0.127  Sum_probs=177.4

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC--
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLA-TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--  226 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~--  226 (444)
                      ++.++...|.++++|...+..+...|+.++|. ..|++++...|.+...|+.++......|++++|..+|++++  ..  
T Consensus       332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l--~~l~  409 (679)
T 4e6h_A          332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI--DRIH  409 (679)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHH
Confidence            56677889999999999999999999999997 99999999999999999999999999999999999999999  43  


Q ss_pred             ---------CCC-----------ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375          227 ---------DPK-----------CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK  286 (444)
Q Consensus       227 ---------~P~-----------~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~  286 (444)
                               .|.           ...++...+....+ .+..+.|...|.++++..++..    ...|...+......  
T Consensus       410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~~~~~----~~lyi~~A~lE~~~--  482 (679)
T 4e6h_A          410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVT----PDIYLENAYIEYHI--  482 (679)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTGGGSC----THHHHHHHHHHHTT--
T ss_pred             HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHh--
Confidence                     253           23355555554433 4678999999999998523221    23333333222111  


Q ss_pred             hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Q 013375          287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSA  364 (444)
Q Consensus       287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~~la~~l~~  364 (444)
                              .++.+.|...|++++ +..|+++..|...+......|+.+.|...|++|+...|+  .....|.........
T Consensus       483 --------~~d~e~Ar~ife~~L-k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~  553 (679)
T 4e6h_A          483 --------SKDTKTACKVLELGL-KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK  553 (679)
T ss_dssp             --------TSCCHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred             --------CCCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence                    134689999999999 999999999999999999999999999999999999884  224788888899999


Q ss_pred             ccCHHHHHHHHHHHHhhcCC
Q 013375          365 QKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~~P~  384 (444)
                      .|..+.+..+.+++++..|+
T Consensus       554 ~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          554 VGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             TCCSHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999994

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.32  E-value=8.5e-12  Score=122.71  Aligned_cols=141  Identities=10%  Similarity=0.048  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375          195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN  274 (444)
Q Consensus       195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~  274 (444)
                      +..|..+|..+...|++++|+..|++++  .+.|+.+.          .  ..       ..+..+.     ......++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl--~~~~~~~~----------~--~~-------~~~~~~~-----~~~~~~~~  276 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVL--RYVEGSRA----------A--AE-------DADGAKL-----QPVALSCV  276 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHH----------H--SC-------HHHHGGG-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhhcCcc----------c--cC-------hHHHHHH-----HHHHHHHH
Confidence            4568899999999999999999999999  55443210          0  00       1111111     11235788


Q ss_pred             HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375          275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG  354 (444)
Q Consensus       275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  354 (444)
                      +++|.++..+           +++++|+..+++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+
T Consensus       277 ~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~  343 (370)
T 1ihg_A          277 LNIGACKLKM-----------SDWQGAVDSCLEAL-EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAI  343 (370)
T ss_dssp             HHHHHHHHHT-----------TCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred             HHHHHHHHhc-----------cCHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHH
Confidence            9999998764           67999999999999 9999999999999999999999999999999999999999 599


Q ss_pred             HHHHHHHHHHccCHHHHHHH
Q 013375          355 WLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       355 ~~~la~~l~~~g~~~eA~~~  374 (444)
                      +..++.++..+++++++...
T Consensus       344 ~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          344 QAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.32  E-value=6.2e-12  Score=99.22  Aligned_cols=86  Identities=12%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      .+|+++.+++++|.++...|++++|+..|+++++++|+++ .+|..+|.++..+|++++|+..|++++++.|+..+....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            5799999999999999999999999999999999999995 999999999999999999999999999988722233333


Q ss_pred             HHHHHHH
Q 013375          392 RTKAKVQ  398 (444)
Q Consensus       392 ~~la~~~  398 (444)
                      ..+..++
T Consensus        81 ~~l~~~l   87 (100)
T 3ma5_A           81 SELQDAK   87 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.31  E-value=1.8e-11  Score=93.66  Aligned_cols=88  Identities=19%  Similarity=0.285  Sum_probs=80.7

Q ss_pred             hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375          312 TNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL  390 (444)
Q Consensus       312 ~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  390 (444)
                      ++| +++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+++++++.+|  ++..+
T Consensus         3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~   79 (91)
T 1na3_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEA   79 (91)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred             CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCHHH
Confidence            344 467899999999999999999999999999999999 59999999999999999999999999999999  89999


Q ss_pred             HHHHHHHHHHhC
Q 013375          391 LRTKAKVQLVQG  402 (444)
Q Consensus       391 ~~~la~~~~~~g  402 (444)
                      +.++|.++..+|
T Consensus        80 ~~~l~~~~~~~g   91 (91)
T 1na3_A           80 KQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999988765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=5.4e-11  Score=95.80  Aligned_cols=87  Identities=20%  Similarity=0.158  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      ++|+..|+++++++|++ ..+|..+|.++...|++++|+.+|+++++.+|  ++..+|+++|.++..+|++++|+..|++
T Consensus         2 ~~a~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN-MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            36899999999999999 59999999999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 013375          414 LLAALQVQTK  423 (444)
Q Consensus       414 al~l~~~~~~  423 (444)
                      ++++.|+..+
T Consensus        79 al~~~~~~~~   88 (115)
T 2kat_A           79 GLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHhcccccc
Confidence            9999997654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.6e-10  Score=114.98  Aligned_cols=227  Identities=13%  Similarity=0.016  Sum_probs=156.8

Q ss_pred             HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375           12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL   91 (444)
Q Consensus        12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~   91 (444)
                      +....|..+.+.|+|++|++.|.++++..+.....  ..............+.++..+|.+|...|++++|+..|+++++
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSA--AAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSB--SSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchh--HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999764321100  0000011122334678899999999999999999999999998


Q ss_pred             cCCCCChHHH-HHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH-HHhhCCCCHHHHHHHHH
Q 013375           92 PCWNLDAETT-AKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV-ALKRIEWDPSILDHLSF  169 (444)
Q Consensus        92 ~~~~~~~~~~-~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~-~l~~~p~~~~~~~~lg~  169 (444)
                      ..+....... ..+...++                    .++...|.+++|+..+..++.-. -....+.-..++..+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~--------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~  143 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIE--------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLAT  143 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHH--------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHH--------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            7211111111 11111122                    23445678999998775442111 11222334568899999


Q ss_pred             HHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC---Ch--H-HHHHH
Q 013375          170 AFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK---CL--P-ALLIA  237 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~---~~--~-a~~~~  237 (444)
                      ++...|++++|+..+++++..      .|...+++..+|.+|...|++++|...|++++  ...|.   .+  . .....
T Consensus       144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~  221 (434)
T 4b4t_Q          144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR--TAANSIYCPTQTVAELDLM  221 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHhhcCCCchHHHHHHHHH
Confidence            999999999999999988754      45567899999999999999999999999998  44432   21  1 22333


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHc
Q 013375          238 SKICGEYPDLAEEGATFASRALECL  262 (444)
Q Consensus       238 ~~~~~~~~~~~~eA~~~~~~al~~~  262 (444)
                      .+..+...+++++|..+|.++++..
T Consensus       222 ~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          222 SGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            4455677899999999999999854

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.24  E-value=3.8e-12  Score=101.28  Aligned_cols=95  Identities=9%  Similarity=-0.059  Sum_probs=85.8

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..+++.+|.++...           |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQ-----------GLYREAVHCYDQLI-TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            46788899888765           67999999999999 9999999999999999999999999999999999999997


Q ss_pred             ------ChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          351 ------NLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       351 ------~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                            . .++..+|.++...|++++|+..+++.
T Consensus        72 ~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           72 EHVAIRS-KLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             TSHHHHH-HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             cHHHHHH-HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence                  5 78999999999999998887766543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.23  E-value=9e-11  Score=98.86  Aligned_cols=141  Identities=13%  Similarity=-0.009  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375          195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN  274 (444)
Q Consensus       195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~  274 (444)
                      ..+++.+|.++...|++++|+..|++++  ...|+..                                  +......++
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~----------------------------------~~~~~~~~~   52 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRL--LIAKEFG----------------------------------DKAAERIAY   52 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHT----------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHhC----------------------------------CchHHHHHH
Confidence            4567777777777777777777777777  3322100                                  011123466


Q ss_pred             HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375          275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG  348 (444)
Q Consensus       275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  348 (444)
                      ..+|.++...           |++++|+..|++++ .+.+..      ..+++++|.++...|++++|+..+++++++.+
T Consensus        53 ~~l~~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           53 SNLGNAYIFL-----------GEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            7777777654           56888888888888 776543      56889999999999999999999999998754


Q ss_pred             CCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          349 GSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       349 ~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ...     ..++..+|.++..+|++++|+.+++++++...
T Consensus       121 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          121 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            321     35788999999999999999999999998865

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.21  E-value=3.4e-11  Score=94.04  Aligned_cols=94  Identities=12%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK-GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      .+.+|.++...|++++|+..|+++++++|++ .. +|..+|.++..+|++++|+.+|+++++.+|  ++..++.+     
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~-----   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP--DSPALQAR-----   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHH-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHH-----
Confidence            3577888888999999999999999999988 48 899999999999999999999999999999  77777654     


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          399 LVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                         +.+.+++..|++++.+.|++...
T Consensus        75 ---~~~~~a~~~~~~~~~~~p~~~~~   97 (99)
T 2kc7_A           75 ---KMVMDILNFYNKDMYNQLEHHHH   97 (99)
T ss_dssp             ---HHHHHHHHHHCCTTHHHHCCSSC
T ss_pred             ---HHHHHHHHHHHHHhccCcccccC
Confidence               56788888888888888866543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.17  E-value=7.1e-11  Score=93.04  Aligned_cols=77  Identities=8%  Similarity=0.001  Sum_probs=70.1

Q ss_pred             hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      .+|++ ..+|+.+|.++..+|++++|+.+|+++++.+|  ++..+|+++|.++..+|++++|+..|++++++.+...+..
T Consensus         2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A            2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence            47998 59999999999999999999999999999999  8999999999999999999999999999999998776543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.14  E-value=4.7e-10  Score=85.56  Aligned_cols=83  Identities=18%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ..+++.+|.++...           +++++|+..|++++ +.+|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus         9 ~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            56788899888654           67999999999999 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcc
Q 013375          351 NLKGWLLMARILSAQK  366 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g  366 (444)
                       ..++.++|.++..+|
T Consensus        77 -~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 -AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -HHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHhcC
Confidence             599999999987664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.09  E-value=2.1e-10  Score=89.45  Aligned_cols=79  Identities=18%  Similarity=0.040  Sum_probs=73.5

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      .|++++|+..|++++ +.+|+++. +++++|.++..+|++++|+..|+++++++|++. .++..        +.+.+|+.
T Consensus        13 ~~~~~~A~~~~~~al-~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~--------~~~~~a~~   82 (99)
T 2kc7_A           13 QGDIENALQALEEFL-QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQAR--------KMVMDILN   82 (99)
T ss_dssp             HTCHHHHHHHHHHHH-HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-HHHHH--------HHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHH--------HHHHHHHH
Confidence            467999999999999 99999999 999999999999999999999999999999995 87754        78889999


Q ss_pred             HHHHHHhhcC
Q 013375          374 ILNAALDQTG  383 (444)
Q Consensus       374 ~~~~al~~~P  383 (444)
                      .|++++..+|
T Consensus        83 ~~~~~~~~~p   92 (99)
T 2kc7_A           83 FYNKDMYNQL   92 (99)
T ss_dssp             HHCCTTHHHH
T ss_pred             HHHHHhccCc
Confidence            9999999888

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.09  E-value=2e-09  Score=99.74  Aligned_cols=112  Identities=14%  Similarity=0.052  Sum_probs=88.9

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ-----RKLNAAHYYAKML  343 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~-----g~~~~A~~~~~~a  343 (444)
                      ..+++-.|+++..-......+....+...+|...+++++ ++||+  +..+|..||.+|...     |+.++|..+|++|
T Consensus       152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl-eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA  230 (301)
T 3u64_A          152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC-DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL  230 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH-HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence            455555665554321110011112346789999999999 99999  788999999999995     9999999999999


Q ss_pred             HhhcCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhcC
Q 013375          344 LKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQTG  383 (444)
Q Consensus       344 l~l~P~~~~~~~~~la~~l~~~-g~~~eA~~~~~~al~~~P  383 (444)
                      ++++|+.....++..|..+... |++++|..++++|+...|
T Consensus       231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred             HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence            9999975249999999999885 999999999999999888

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.08  E-value=2.2e-09  Score=103.53  Aligned_cols=122  Identities=11%  Similarity=-0.017  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---C-----CHHHHHHHHH--HHHhhcCCCChHHHHHHHHHHHHc
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---R-----KLNAAHYYAK--MLLKLEGGSNLKGWLLMARILSAQ  365 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~---g-----~~~~A~~~~~--~al~l~P~~~~~~~~~la~~l~~~  365 (444)
                      ..+.+|+.+|++|+ +++|+++.++-.++.++...   +     ........++  .++.++|.+ ..++..++.++...
T Consensus       213 ~~~~~A~~l~e~Al-~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~-a~~~~alal~~l~~  290 (372)
T 3ly7_A          213 KSLNRASELLGEIV-QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL-SIIYQIKAVSALVK  290 (372)
T ss_dssp             HHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC-HHHHHHHHHHHHhC
Confidence            35789999999999 99999999999988888531   1     1111111222  234678888 49999999999999


Q ss_pred             cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      |++++|+..+++|+.++|   +...|..+|.++...|++++|++.|++|+.+.|...
T Consensus       291 gd~d~A~~~l~rAl~Ln~---s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLEM---SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            999999999999999998   467889999999999999999999999999999664

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.05  E-value=9.6e-07  Score=89.90  Aligned_cols=212  Identities=8%  Similarity=-0.054  Sum_probs=157.9

Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013375          177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS  256 (444)
Q Consensus       177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~  256 (444)
                      .+.....|++++...|..+..|+.++..+...|+.++|..+|++|+  .. |.+...++..+..  ...+   +.   ++
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi--~~-P~~~~l~~~y~~~--~e~~---~~---~~  263 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI--EM-SDGMFLSLYYGLV--MDEE---AV---YG  263 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CCSSHHHHHHHHH--TTCT---HH---HH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hC-CCcHHHHHHHHhh--cchh---HH---HH
Confidence            3456789999999999999999999999999999999999999999  67 9987766543332  1111   11   33


Q ss_pred             HHHHHcC--CC------cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013375          257 RALECLG--DG------CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYA  328 (444)
Q Consensus       257 ~al~~~~--~~------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~  328 (444)
                      ++.+...  ..      ........|.......           .+.+..+.|...|+++. . .+....+|...|.+..
T Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~-----------~r~~~~~~AR~i~~~A~-~-~~~~~~v~i~~A~lE~  330 (493)
T 2uy1_A          264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYV-----------LKKRGLELFRKLFIELG-N-EGVGPHVFIYCAFIEY  330 (493)
T ss_dssp             HHHHHTC----------CHHHHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHT-T-SCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhhhhcccccHHHHHHHHHHH-----------HHcCCHHHHHHHHHHhh-C-CCCChHHHHHHHHHHH
Confidence            3333210  00      0000112233322222           23456899999999993 3 3346777777776666


Q ss_pred             HcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHH
Q 013375          329 EQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA  407 (444)
Q Consensus       329 ~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A  407 (444)
                      ..+ +.+.|...|+++++..|+.+ ..|...+..+...|+.+.|...|+++    +  ....+|..........|+.+.+
T Consensus       331 ~~~~d~~~ar~ife~al~~~~~~~-~~~~~yid~e~~~~~~~~aR~l~er~----~--k~~~lw~~~~~fE~~~G~~~~~  403 (493)
T 2uy1_A          331 YATGSRATPYNIFSSGLLKHPDST-LLKEEFFLFLLRIGDEENARALFKRL----E--KTSRMWDSMIEYEFMVGSMELF  403 (493)
T ss_dssp             HHHCCSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHS----C--CBHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHCCChHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH----H--HHHHHHHHHHHHHHHCCCHHHH
Confidence            655 69999999999999999985 88888888889999999999999998    4  5678888888888999999999


Q ss_pred             HHHHHHHHHHHH
Q 013375          408 VETYTHLLAALQ  419 (444)
Q Consensus       408 ~~~~~~al~l~~  419 (444)
                      ...+++++....
T Consensus       404 r~v~~~~~~~~~  415 (493)
T 2uy1_A          404 RELVDQKMDAIK  415 (493)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998665

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.03  E-value=6.4e-10  Score=112.94  Aligned_cols=147  Identities=13%  Similarity=0.001  Sum_probs=113.3

Q ss_pred             HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375            9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR   88 (444)
Q Consensus         9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~   88 (444)
                      .+.....++..+..+|+|++|+..|+++|++.++.+..+.|.           +...+..+|.+|..+|++++|+.+|++
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~-----------~a~~~~nLa~~y~~~g~~~eA~~~~~~  376 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY-----------VLRLLSIASEVLSYLQAYEEASHYARR  376 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            445566788889999999999999999999987765443332           567889999999999999999999999


Q ss_pred             HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375           89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS  168 (444)
Q Consensus        89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg  168 (444)
                      +|.+    -       ...++                                             ..+|+-...+++||
T Consensus       377 aL~i----~-------~~~lG---------------------------------------------~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          377 MVDG----Y-------MKLYH---------------------------------------------HNNAQLGMAVMRAG  400 (490)
T ss_dssp             HHHH----H-------HHHSC---------------------------------------------TTCHHHHHHHHHHH
T ss_pred             HHHH----H-------HHHcC---------------------------------------------CCCHHHHHHHHHHH
Confidence            9987    0       00000                                             11233334678999


Q ss_pred             HHHHhcCCHHHHHHHHHhhcCC-----CCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          169 FAFSIAGDLSSLATQIEELLPG-----IINR---KERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       169 ~~l~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .+|..+|++++|+..|++|+++     .|++   .+...+|+.++..+|++++|+..|+++.
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999854     4454   4556678888888888888888888876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.01  E-value=8.3e-09  Score=99.51  Aligned_cols=153  Identities=10%  Similarity=-0.007  Sum_probs=109.4

Q ss_pred             CCCCCCHHHHHH--HHHHHHHCCC---chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013375          189 PGIINRKERYHI--LALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG  263 (444)
Q Consensus       189 ~~~p~~~~~~~~--la~~l~~~g~---~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  263 (444)
                      ..-|.++++|-.  .|..++..+.   +.+|+.+|++|+  +++|++..++..++..+..               +....
T Consensus       188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al--~lDP~~a~A~A~la~a~~~---------------~~~~~  250 (372)
T 3ly7_A          188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV--QSSPEFTYARAEKALVDIV---------------RHSQH  250 (372)
T ss_dssp             HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH---------------HHHHS
T ss_pred             ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH---------------HhccC
Confidence            334566555433  4666666544   467888888888  8888888887654433210               00011


Q ss_pred             CCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375          264 DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML  343 (444)
Q Consensus       264 ~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  343 (444)
                      +...                         ........|+... .++ ..+|.++.++..+|.++...|++++|+..+++|
T Consensus       251 ~~~~-------------------------~~~~~l~~a~~a~-~a~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rA  303 (372)
T 3ly7_A          251 PLDE-------------------------KQLAALNTEIDNI-VTL-PELNNLSIIYQIKAVSALVKGKTDESYQAINTG  303 (372)
T ss_dssp             CCCH-------------------------HHHHHHHHHHHHH-HTC-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCch-------------------------hhHHHHHHHHHHH-Hhc-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            1100                         0001123344422 466 788999999999999999999999999999999


Q ss_pred             HhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          344 LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       344 l~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      ++++|+  +.+|..+|.++.-.|++++|++.|++|+.++|  ....
T Consensus       304 l~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P--~~~t  345 (372)
T 3ly7_A          304 IDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP--GANT  345 (372)
T ss_dssp             HHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--SHHH
T ss_pred             HhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcCh
Confidence            999985  58999999999999999999999999999999  5543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.01  E-value=8.5e-09  Score=86.24  Aligned_cols=110  Identities=20%  Similarity=0.086  Sum_probs=99.4

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDA  371 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA  371 (444)
                      +++++|+..|+++. +..+.+  +.  ||.+|...+.+++|++.|+++.+.  ++ ..+++++|.++..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa-~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKAC-ELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NS-GNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHH-HTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHH-cCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHcCCCCCccHHHH
Confidence            46899999999999 887444  44  999999999999999999999887  56 5999999999998    8999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAA  417 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l  417 (444)
                      +.+|++|.+.    .++.+++++|.++..    .+++++|+..|+++.+.
T Consensus        81 ~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           81 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9999999976    478999999999999    99999999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.01  E-value=8.7e-09  Score=86.16  Aligned_cols=120  Identities=17%  Similarity=0.075  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375          246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL  325 (444)
Q Consensus       246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~  325 (444)
                      +++++|+.+|+++.+.-++       .+.  +|.+|...           ...++|+..|+++. +.  +++.++++||.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~-------~a~--lg~~y~~g-----------~~~~~A~~~~~~Aa-~~--g~~~a~~~Lg~   65 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM-------FGC--LSLVSNSQ-----------INKQKLFQYLSKAC-EL--NSGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT-------THH--HHHHTCTT-----------SCHHHHHHHHHHHH-HT--TCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH-------hhh--HHHHHHcC-----------CCHHHHHHHHHHHH-cC--CCHHHHHHHHH
Confidence            4678999999999985322       244  88887653           34567999999999 76  89999999999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          326 EYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       326 ~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      +|..    .+++++|+..|++|.+.  .+ ..++++||.++..    .+++++|+.+|++|.+..    +..+..+++
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~l~  136 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG----SEDACGILN  136 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHC-
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHh
Confidence            9999    89999999999999886  56 4999999999999    899999999999999874    445555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.00  E-value=2.3e-09  Score=99.37  Aligned_cols=114  Identities=17%  Similarity=0.114  Sum_probs=98.7

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHc-----c
Q 013375          305 LVSAARSTNMRDLSILYRLSLEYAE---Q--R------KLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQ-----K  366 (444)
Q Consensus       305 ~~~al~~~~P~~~~a~~~lg~~~~~---~--g------~~~~A~~~~~~al~l~P~--~~~~~~~~la~~l~~~-----g  366 (444)
                      +.+++...+|+++++++..|.+...   .  |      ...+|...+++|++++|+  + ..+|..+|.+|...     |
T Consensus       140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~-GsA~~~LG~lY~~vPp~~gG  218 (301)
T 3u64_A          140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE-GAVWNVLTKFYAAAPESFGG  218 (301)
T ss_dssp             HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHSCTTTTC
T ss_pred             HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc-CHHHHHHHHHHHhCCCccCC
Confidence            3444448899999999999888754   1  2      357899999999999999  5 36999999999995     9


Q ss_pred             CHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Q 013375          367 RYEDAETILNAALDQTGKWEQ-GELLRTKAKVQLV-QGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       367 ~~~eA~~~~~~al~~~P~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~~~~  421 (444)
                      +.++|..+|++|++++|  +. ...++..|..+.. +|++++|...+++++...|..
T Consensus       219 d~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          219 GMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             CHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999  64 9999999999988 499999999999999988863

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.96  E-value=4.8e-09  Score=81.43  Aligned_cols=70  Identities=17%  Similarity=0.057  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          313 NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      +|+|++++..+|.+++..++   .++|...++++++++|++ ..++..+|.+++..|+|++|+.+|+++++.+|
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            79999999999999987666   799999999999999999 59999999999999999999999999999999

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.91  E-value=4.7e-07  Score=92.20  Aligned_cols=240  Identities=8%  Similarity=-0.072  Sum_probs=152.2

Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHhhc-CCCCCCChHHHHHHHHHHhc---CCCCHH
Q 013375          175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLS-GSEDPKCLPALLIASKICGE---YPDLAE  249 (444)
Q Consensus       175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~-~~~A~~~~~~al~-~~~~P~~~~a~~~~~~~~~~---~~~~~~  249 (444)
                      |+++.+...|++++...| +.+.|..+.......|. .+.....|+.++. ...+|.+...+......+..   ..++.+
T Consensus        28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~  106 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE  106 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence            778888888888888777 77788877777666653 3456677777773 02366666666544333211   123456


Q ss_pred             HHHHHHHHHHHHcCCCcchhhhHHHHHhhhh-----------------------hhhhhhhhh----------chHHHH-
Q 013375          250 EGATFASRALECLGDGCDQMESTANCLLGIS-----------------------LSAQSKVAI----------TDFDRA-  295 (444)
Q Consensus       250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~-----------------------~~~~~~~~~----------~~~~~~-  295 (444)
                      .+...|+++|. .|..........+......                       |........          .+.++. 
T Consensus       107 ~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          107 KIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            67778888887 4443211100111110000                       000000000          001111 


Q ss_pred             -------hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH-------
Q 013375          296 -------TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-------  361 (444)
Q Consensus       296 -------~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~-------  361 (444)
                             +..+.....|++++ ...|.++..|+..+..+.+.|+.++|...|++|+.. |.+. ..|...+..       
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al-~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~~~e~~~~~  262 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYIL-DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGLVMDEEAVY  262 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHHHTTCTHHH
T ss_pred             CccCcchhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHhhcchhHHH
Confidence                   11345678999999 999999999999999999999999999999999999 9874 666544432       


Q ss_pred             ---------------------------------HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC-CHHHH
Q 013375          362 ---------------------------------LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG-QLKGA  407 (444)
Q Consensus       362 ---------------------------------l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g-~~~~A  407 (444)
                                                       +...+..+.|...|++| . .|+ ....+|...|.+....| +++.|
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~a  339 (493)
T 2uy1_A          263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATP  339 (493)
T ss_dssp             HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHH
Confidence                                             22356788899999999 4 442 35677777787777777 58999


Q ss_pred             HHHHHHHHHHHHhhh
Q 013375          408 VETYTHLLAALQVQT  422 (444)
Q Consensus       408 ~~~~~~al~l~~~~~  422 (444)
                      ...|+.+++..|+..
T Consensus       340 r~ife~al~~~~~~~  354 (493)
T 2uy1_A          340 YNIFSSGLLKHPDST  354 (493)
T ss_dssp             HHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHCCCCH
Confidence            999999988766543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.91  E-value=3.1e-09  Score=107.86  Aligned_cols=121  Identities=9%  Similarity=-0.004  Sum_probs=102.6

Q ss_pred             HhhHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--hHHHHHHH
Q 013375          295 ATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLMA  359 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~--~~~~~~la  359 (444)
                      .|++++|+..|++++ ++     .|+++   .++.+||.+|..+|++++|+.++++++++.     |+|+  +..+++||
T Consensus       322 qg~~~eA~~l~~~aL-~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          322 EGLYHEVVKLCRECL-EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            478999999999998 74     45565   567899999999999999999999999863     6664  35688999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhh-----cCCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013375          360 RILSAQKRYEDAETILNAALDQ-----TGKWEQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       360 ~~l~~~g~~~eA~~~~~~al~~-----~P~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  418 (444)
                      .+|..+|+|++|+..|++|+++     -|  ++   .....+++.++.++|++++|...|+++.+-.
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~--~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGP--SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999964     35  44   5666789999999999999999999997644

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.90  E-value=1.3e-08  Score=85.47  Aligned_cols=98  Identities=11%  Similarity=0.037  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhc-C-CCChHHHHHHHHHHHHccCHHHH
Q 013375          297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLE-G-GSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~-P-~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                      ....+.+.|.+.+ ..+|.+.++.+++|+++.+.+   ++++++..++..++.+ | ++ .++++++|..+++.|+|++|
T Consensus        13 ~l~~~~~~y~~e~-~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~-rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHH-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch-HHHHHHHHHHHHHccCHHHH
Confidence            4678889999999 999999999999999999998   6779999999999999 8 44 59999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      +.+++++|+..|  +|..+...+-.+.
T Consensus        91 ~~y~~~lL~ieP--~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           91 LKYVRGLLQTEP--QNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--CCHHHHHHHHHHH
Confidence            999999999999  8888877765554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.80  E-value=2.4e-08  Score=77.38  Aligned_cols=74  Identities=11%  Similarity=-0.027  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375          157 IEWDPSILDHLSFAFSIAGD---LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       157 ~p~~~~~~~~lg~~l~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      +|++++++..+|.++...++   .++|...++++++++|+++.+++.+|..++..|+|++|+..+++++  ..+|+++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l--~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL--DSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCcc
Confidence            58999999999999987665   6999999999999999999999999999999999999999999999  88998544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.52  E-value=2.5e-07  Score=92.36  Aligned_cols=86  Identities=14%  Similarity=0.149  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC--hHHHHHHHH
Q 013375          296 TRQAKALQALVSAARST-----NMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMAR  360 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~-----~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~  360 (444)
                      |++++|+..|++++ ++     .|+++.   ++.+||.+|..+|++++|+.++++++++     -|+++  +..+++||.
T Consensus       312 g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          312 KSPSELLEICELSQ-EKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             SCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH-HHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            57899999999998 73     566664   5689999999999999999999999875     35553  356889999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhc
Q 013375          361 ILSAQKRYEDAETILNAALDQT  382 (444)
Q Consensus       361 ~l~~~g~~~eA~~~~~~al~~~  382 (444)
                      +|..+|+|++|+..|++|+++.
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.52  E-value=6.7e-07  Score=75.08  Aligned_cols=99  Identities=12%  Similarity=0.012  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC-C-CCHHHHHHHHHH
Q 013375          249 EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-M-RDLSILYRLSLE  326 (444)
Q Consensus       249 ~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~-P-~~~~a~~~lg~~  326 (444)
                      ..+...|.+.++..+++     ..+.+.+|.++....        ..++.++++..++.++ +.+ | ++.+.+|+||..
T Consensus        15 ~~~~~~y~~e~~~~~~~-----~~~~F~ya~~Lv~S~--------~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~   80 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRSK--------YNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVG   80 (152)
T ss_dssp             HHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHTCS--------SHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCc-----HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHH
Confidence            34556667776633322     567888888886532        1246789999999999 888 7 678999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 013375          327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL  362 (444)
Q Consensus       327 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l  362 (444)
                      ++++|+|++|+++++++|+++|++. .+......+-
T Consensus        81 ~~kl~~Y~~A~~y~~~lL~ieP~n~-QA~~Lk~~ie  115 (152)
T 1pc2_A           81 NYRLKEYEKALKYVRGLLQTEPQNN-QAKELERLID  115 (152)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Confidence            9999999999999999999999994 8877655543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.51  E-value=2.5e-07  Score=92.39  Aligned_cols=92  Identities=7%  Similarity=-0.011  Sum_probs=78.0

Q ss_pred             HcCCHHHHHHHHHHHHhh-----cCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-----CC-CCcHHHHHHHH
Q 013375          329 EQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT-----GK-WEQGELLRTKA  395 (444)
Q Consensus       329 ~~g~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~-----P~-~~~~~~~~~la  395 (444)
                      ..|++++|+..|++++++     .|+|+  +..+.++|.+|..+|+|++|+.+++++++..     |+ ++-...++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            358999999999999985     45653  3568899999999999999999999999652     30 04467789999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          396 KVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       396 ~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      .++..+|++++|+..|+++++|...
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~  414 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEV  414 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.51  E-value=1.2e-06  Score=69.09  Aligned_cols=79  Identities=8%  Similarity=-0.008  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-------GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG  388 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~  388 (444)
                      ++.-.+.+|..+...|++..|+..|++|+...+       .. ..++..+|.++.++|++++|+.++++++++.|  ++.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~-~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P--~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDP--EHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH
Confidence            456678999999999999999999999998752       23 47899999999999999999999999999999  888


Q ss_pred             HHHHHHHHH
Q 013375          389 ELLRTKAKV  397 (444)
Q Consensus       389 ~~~~~la~~  397 (444)
                      .+..+++.+
T Consensus        81 ~~~~n~~~~   89 (104)
T 2v5f_A           81 RANGNLKYF   89 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHhhHHHH
Confidence            888877633

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.39  E-value=1.1e-06  Score=69.44  Aligned_cols=76  Identities=21%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG-------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP  232 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~  232 (444)
                      ++.-.+.+|..+...|+|..|+..|+.|++.       .+..++++.+||.++..+|++++|+..+++++  .++|++..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~~   81 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQR   81 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHH
Confidence            4556788999999999999999999999975       35678999999999999999999999999999  89999988


Q ss_pred             HHHHH
Q 013375          233 ALLIA  237 (444)
Q Consensus       233 a~~~~  237 (444)
                      +..+.
T Consensus        82 ~~~n~   86 (104)
T 2v5f_A           82 ANGNL   86 (104)
T ss_dssp             HHHHH
T ss_pred             HHhhH
Confidence            76544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.37  E-value=1.7e-06  Score=86.41  Aligned_cols=95  Identities=16%  Similarity=0.079  Sum_probs=74.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhh-----cCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-----CC-CCcHHHHH
Q 013375          326 EYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT-----GK-WEQGELLR  392 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~-----P~-~~~~~~~~  392 (444)
                      -+..+|++++|+..+++++++     .|+|+  ...+.++|.+|..+|+|++|+.+++++++..     |+ ++-...++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            355678999999999999875     35553  3567889999999999999999999998542     30 03356688


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          393 TKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       393 ~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      ++|.++..+|++++|+..|+++++|...
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.37  E-value=1.2e-06  Score=87.45  Aligned_cols=87  Identities=14%  Similarity=0.069  Sum_probs=75.2

Q ss_pred             HHhhHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--hHHHHHH
Q 013375          294 RATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLM  358 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~--~~~~~~l  358 (444)
                      +.|++++|++.+++++ ++     .|+++   .++.+||.+|..+|++++|+.++++++++.     |+++  +..+++|
T Consensus       299 ~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            4578999999999999 75     56665   467899999999999999999999999763     6664  2468899


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh
Q 013375          359 ARILSAQKRYEDAETILNAALDQ  381 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~  381 (444)
                      |.+|..+|++++|+..+++|+++
T Consensus       378 a~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999965

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.36  E-value=4.2e-06  Score=67.72  Aligned_cols=100  Identities=12%  Similarity=0.017  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHH
Q 013375          297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA---AHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~  372 (444)
                      ....+...|.+.+ ..++.+.++.+++|+++...++...   ++..++..+.-+ |...-++++.||..+++.|+|++|+
T Consensus        16 ~l~~~~~~y~~e~-~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           16 DLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            4567888999999 8999999999999999999887777   999999999987 6333589999999999999999999


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          373 TILNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       373 ~~~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      .+++..|+..|  +|..+...+..+..
T Consensus        95 ~~~~~lL~~eP--~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           95 KYVRGLLQTEP--QNNQAKELERLIDK  119 (126)
T ss_dssp             HHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence            99999999999  88888877766544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.97  E-value=0.0012  Score=67.14  Aligned_cols=115  Identities=8%  Similarity=0.008  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHHccCHHHHH
Q 013375          296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMARILSAQKRYEDAE  372 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~~la~~l~~~g~~~eA~  372 (444)
                      +..++|.+.|++.. ... +.|..++..+-..+.+.|++++|+..|++..+  +.|+  ...|..+-..+.+.|+.++|.
T Consensus        84 ~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~  160 (501)
T 4g26_A           84 PGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAY  160 (501)
T ss_dssp             HHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHH
Confidence            45788999999987 543 44778899999999999999999999999876  4576  488999999999999999999


Q ss_pred             HHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          373 TILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       373 ~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      ..+++..+.  .|   +...|..+-..+.+.|+.++|.+.+++.-+
T Consensus       161 ~l~~~M~~~G~~P---d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          161 EVDAHMVESEVVP---EEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHTTCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCC---CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            999998864  46   667788899999999999999999988754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.85  E-value=0.00051  Score=56.40  Aligned_cols=96  Identities=8%  Similarity=0.038  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      ....+.|.+-.  .++-++++.|++|+++.+..+.   .+++..++..+.-+|+..-++++.+|..+.++|+|++|..++
T Consensus        23 ~~lr~qY~~E~--~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~  100 (144)
T 1y8m_A           23 EILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV  100 (144)
T ss_dssp             HHHHHHHHHTT--STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence            33444444332  2467899999999999998755   479999999999999765689999999999999999999999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHH
Q 013375          376 NAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       376 ~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      +..|+..|  +|..+...+..+.
T Consensus       101 d~lL~~eP--~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A          101 DTLFEHER--NNKQVGALKSMVE  121 (144)
T ss_dssp             HHHHHTCC--CCHHHHHHHHHHH
T ss_pred             HHHHhcCC--CcHHHHHHHHHHH
Confidence            99999999  8888777665554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.80  E-value=0.00016  Score=59.82  Aligned_cols=109  Identities=13%  Similarity=0.028  Sum_probs=91.6

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhcCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          312 TNMRDLSILYRLSLEYAEQRKL------NAAHYYAKMLLKLEGGSN-------LKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       312 ~~P~~~~a~~~lg~~~~~~g~~------~~A~~~~~~al~l~P~~~-------~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      ..|+|++.|......+...|+.      ++-++.|++|++.-|-..       ...|...|.. ...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            6899999999999999988999      899999999998776521       2456666655 5669999999999999


Q ss_pred             HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +.+..  ..+.+|...|.....+|+.+.|...+.+++.+.|+...
T Consensus        87 ~~~hK--kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           87 RANCK--KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHCT--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHhH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            99876  67999999999999999999999999999998886544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.75  E-value=0.00029  Score=57.13  Aligned_cols=84  Identities=6%  Similarity=0.012  Sum_probs=72.7

Q ss_pred             CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375          315 RDLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL  391 (444)
Q Consensus       315 ~~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  391 (444)
                      -.+.+.+++|+++.+..+.   .+++..++..++-+|...-++++.+|..+.+.|+|++|+.+++..|+..|  +|..+.
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP--~N~QA~  115 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNKQVG  115 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT--TCHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CCHHHH
Confidence            4678999999999998755   47999999999999965458999999999999999999999999999999  888888


Q ss_pred             HHHHHHHHH
Q 013375          392 RTKAKVQLV  400 (444)
Q Consensus       392 ~~la~~~~~  400 (444)
                      ..+..+..+
T Consensus       116 ~Lk~~Ie~k  124 (134)
T 3o48_A          116 ALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.73  E-value=0.00015  Score=58.65  Aligned_cols=82  Identities=21%  Similarity=0.136  Sum_probs=73.1

Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhhcCCC-C-CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013375          154 LKRIEWDPSILDHLSFAFSIAGDLSS---LATQIEELLPGI-I-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP  228 (444)
Q Consensus       154 l~~~p~~~~~~~~lg~~l~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P  228 (444)
                      +...+...++.+++|.+|.+..+...   ++..++..++.+ | ..-+..|.||..+++.|+|++|...++.+|  +.+|
T Consensus        28 ~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL--~~eP  105 (126)
T 1nzn_A           28 KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL--QTEP  105 (126)
T ss_dssp             HHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCT
T ss_pred             hccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCC
Confidence            45567889999999999999988766   999999999987 5 678999999999999999999999999999  8999


Q ss_pred             CChHHHHHH
Q 013375          229 KCLPALLIA  237 (444)
Q Consensus       229 ~~~~a~~~~  237 (444)
                      +|..+..+.
T Consensus       106 ~n~QA~~Lk  114 (126)
T 1nzn_A          106 QNNQAKELE  114 (126)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999887543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.70  E-value=0.0018  Score=65.65  Aligned_cols=174  Identities=9%  Similarity=0.007  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHH
Q 013375           67 ELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLM  146 (444)
Q Consensus        67 ~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~  146 (444)
                      ..+-..+.+.|++++|+..|+++.+..-.++.....    .+-..+...+.           .......+..++|..++.
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn----~Li~~c~~~~~-----------~~~~~~~~~l~~A~~lf~   94 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYN----VLLYVCSLAEA-----------ATESSPNPGLSRGFDIFK   94 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHH----HHHHHHTTCCC-----------CSSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH----HHHHHHHhCCc-----------hhhhhhcchHHHHHHHHH
Confidence            333466789999999999999998763222322111    11111111110           011234556788887762


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC
Q 013375          147 ILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGS  225 (444)
Q Consensus       147 ~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~  225 (444)
                          +-...-.+-|...|..+-.++.+.|++++|.+.|++..+.. ..+...|..+-..|.+.|+.++|..+|++-.+..
T Consensus        95 ----~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A           95 ----QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE  170 (501)
T ss_dssp             ----HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ----HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence                21222234477889999999999999999999999887542 3367889999999999999999999999988656


Q ss_pred             CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013375          226 EDPKCLPALLIASKICGEYPDLAEEGATFASRALEC  261 (444)
Q Consensus       226 ~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~  261 (444)
                      ..|+... +..+...+ ...|+.++|...+++.-+.
T Consensus       171 ~~Pd~~t-y~~Li~~~-~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          171 VVPEEPE-LAALLKVS-MDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             CCCCHHH-HHHHHHHH-HHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHHHH-hhCCCHHHHHHHHHHHHHh
Confidence            7787543 33333443 3478999999999998774

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.36  E-value=0.0046  Score=51.17  Aligned_cols=54  Identities=6%  Similarity=-0.077  Sum_probs=41.9

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      ++.++|.+.|+.++ .++...+.+|...|..-.++|++..|.+.+.+|+.+.|..
T Consensus        74 ~D~d~aR~vy~~a~-~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           74 QEPDDARDYFQMAR-ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HCGGGCHHHHHHHH-HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             cCHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            45677788888888 7777777777777777778888888888888888887774

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.25  E-value=0.00098  Score=56.25  Aligned_cols=52  Identities=10%  Similarity=-0.038  Sum_probs=41.8

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375          295 ATRQAKALQALVSAARSTNMRDLS---------ILYRLSLEYAEQRKLNAAHYYAKMLLKLE  347 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~  347 (444)
                      .+.|+-|+-....++ .+..++++         +++.+|.+++..|+|..|...|++||.+.
T Consensus        33 ~~LY~sA~~La~lLl-Sl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           33 AGLHSNVRLLSSLLL-TLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             TTCHHHHHHHHHHHH-HHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH-HhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            356888888887766 55544444         78999999999999999999999997654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.22  E-value=0.0017  Score=52.57  Aligned_cols=82  Identities=12%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      ..+.+.++.++..-.        ...+..++|..++..+ +.+|. .-+.+|.||..++++|+|++|.++.+..|++.|+
T Consensus        40 ~qt~F~yAw~Lv~S~--------~~~d~~~GI~LLe~l~-~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           40 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             HHHHHHHHHHHHHSS--------CHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            466777777665421        1235679999999999 89994 5789999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHH
Q 013375          350 SNLKGWLLMARIL  362 (444)
Q Consensus       350 ~~~~~~~~la~~l  362 (444)
                      +. .+......|-
T Consensus       111 N~-QA~~Lk~~Ie  122 (134)
T 3o48_A          111 NK-QVGALKSMVE  122 (134)
T ss_dssp             CH-HHHHHHHHHH
T ss_pred             CH-HHHHHHHHHH
Confidence            94 8777655543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.15  E-value=0.0032  Score=53.15  Aligned_cols=92  Identities=21%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc---CCC-----
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--------LKGWLLMARILSAQKRYEDAETILNAALDQT---GKW-----  385 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~---P~~-----  385 (444)
                      .-...+...|.|+.|+-....++.+..+++        .+++..+|.+++.+|+|..|...|++||...   |+.     
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            334456678999999999999887765443        1378889999999999999999999998542   210     


Q ss_pred             ---------------CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          386 ---------------EQGELLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       386 ---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                                     ...++.|..+.|+.++|++++|+..++.
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                           1237889999999999999999998764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.09  E-value=0.0025  Score=52.31  Aligned_cols=81  Identities=12%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      ....|+++.++..-.        ...+..+++..++..+ ..+|. .-+.+|.||..++++|+|++|.++++..|++.|+
T Consensus        39 ~~t~F~YAw~Lv~S~--------~~~di~~GI~LLe~l~-~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           39 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             HHHHHHHHHHHHHSS--------SHHHHHHHHHHHHHHH-HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            456677777665421        1245679999999999 89984 5689999999999999999999999999999999


Q ss_pred             CChHHHHHHHHH
Q 013375          350 SNLKGWLLMARI  361 (444)
Q Consensus       350 ~~~~~~~~la~~  361 (444)
                      +. ++..+...+
T Consensus       110 n~-QA~~Lk~~I  120 (144)
T 1y8m_A          110 NK-QVGALKSMV  120 (144)
T ss_dssp             CH-HHHHHHHHH
T ss_pred             cH-HHHHHHHHH
Confidence            94 777665544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.022  Score=60.18  Aligned_cols=113  Identities=12%  Similarity=0.020  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHh--------hcCCCC---------hHHHHH
Q 013375          298 QAKALQALVSAARSTNMRDLSILYRLSLEYAE--Q-RKLNAAHYYAKMLLK--------LEGGSN---------LKGWLL  357 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~--~-g~~~~A~~~~~~al~--------l~P~~~---------~~~~~~  357 (444)
                      ++.|+..+++.. ..+|... +++..+.+...  . .+--+|+....++++        +.+.+.         ...+..
T Consensus       265 ~~~a~~~le~L~-~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~  342 (754)
T 4gns_B          265 VDFTIDYLKGLT-KKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI  342 (754)
T ss_dssp             HHHHHHHHHHHH-HHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence            588999999999 9999764 33333333221  2 233468877777764        223321         123444


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       358 la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      -+..+..+|+|+-|+.+.++|+...|  ..+..|+.++.+|..+|+++.|+-.+...
T Consensus       343 Qa~FLl~K~~~elAL~~Ak~AV~~aP--seF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          343 QTNFLLNRGDYELALGVSNTSTELAL--DSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhcCc--hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            47778888999999999999999999  89999999999999999999999887665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.42  E-value=0.0023  Score=58.40  Aligned_cols=124  Identities=13%  Similarity=0.001  Sum_probs=92.0

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHccCHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MARILSAQKRYEDAET  373 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~-la~~l~~~g~~~eA~~  373 (444)
                      .+..++|++.....| +.+|.|++....|-..+.-.|+++.|.+.++-+.+++|+.. ..-.. ...|..        . 
T Consensus        10 ~g~L~~al~~~~~~V-R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~-~~a~~yr~lI~a--------E-   78 (273)
T 1zbp_A           10 EGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-PGASQLRHLVKA--------A-   78 (273)
T ss_dssp             TTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHH--------H-
T ss_pred             CCCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHH--------H-
Confidence            467899999999999 99999999999999999999999999999999999999973 33222 111111        1 


Q ss_pred             HHHHHH-h--hcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCcc
Q 013375          374 ILNAAL-D--QTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK  429 (444)
Q Consensus       374 ~~~~al-~--~~P~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~  429 (444)
                      ..+..+ .  ..|.    +.........+......|+.++|.+.-.++++..|...++.....
T Consensus        79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~~~~  141 (273)
T 1zbp_A           79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS  141 (273)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred             HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcCCCC
Confidence            112222 1  1121    023445566788888899999999999999999987777555433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.15  E-value=0.22  Score=48.40  Aligned_cols=95  Identities=18%  Similarity=0.121  Sum_probs=52.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcC--CCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc----CCC-CcHHHH
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEG--GSN---LKGWLLMARILSAQKRYEDAETILNAALDQT----GKW-EQGELL  391 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~----P~~-~~~~~~  391 (444)
                      .||..|...|++.+|.+.+.+.+.--.  |+.   .+.+..-..++..+|++.++..++.+|....    |+| -.+.+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            566666666666666666666654211  111   2344455556666666666666666665332    200 013334


Q ss_pred             HHHHHHHH-HhCCHHHHHHHHHHHHH
Q 013375          392 RTKAKVQL-VQGQLKGAVETYTHLLA  416 (444)
Q Consensus       392 ~~la~~~~-~~g~~~~A~~~~~~al~  416 (444)
                      ..-|..+. ..++|.+|...|-++++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            45566666 66666666666666553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.87  E-value=0.16  Score=49.35  Aligned_cols=66  Identities=14%  Similarity=0.019  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       354 ~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      +...++..+...|++.+|+..+.+++..+|  -+..+|..+-.++...|+..+|+..|+++-+...+.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~e  238 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  238 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            344566677778888888888888888888  777788888888888888888888888877655443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.46  E-value=0.093  Score=52.77  Aligned_cols=65  Identities=11%  Similarity=-0.021  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 013375          297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS  363 (444)
Q Consensus       297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~  363 (444)
                      .+..|...|.+|+ .+.|++...++.||.+....|+.-+|+-+|-|++.....++ .++.++..++.
T Consensus       167 ~~~~A~~~Y~~A~-~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~-~a~~nL~~~f~  231 (497)
T 1ya0_A          167 QTSQAESYYRHAA-QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AASTNLQKALS  231 (497)
T ss_dssp             CHHHHHHHHHHHH-HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh-hHHHHHHHHHH
Confidence            4567777777777 77777777777777777777777777777777776665563 77777766554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.16  Score=53.65  Aligned_cols=59  Identities=19%  Similarity=0.177  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      .+.--+..+...|+++-|++..++|+.+.|.. ..+|..|+.+|..+|+|+.|+-.+...
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444666778899999999999999999998 699999999999999999999887655

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.11  E-value=3.4  Score=42.56  Aligned_cols=116  Identities=11%  Similarity=-0.007  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYR----LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~----lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                      .+.+.|...+.+.. ...+-+......    +|.-+...+...++...+.+.....+++ .......+. ....|+++.|
T Consensus       228 ~d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~-Alr~~d~~~a  304 (618)
T 1qsa_A          228 QDAENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRM-ALGTGDRRGL  304 (618)
T ss_dssp             HCHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHH-HHHHTCHHHH
T ss_pred             cCHHHHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHH-HHHCCCHHHH
Confidence            35688888888876 554445443332    2333333454678888888876554443 233233344 4467999999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      ..++++.-...+  ......|=+|.++..+|+.++|...|+++..
T Consensus       305 ~~~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          305 NTWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999977655433  4567777789999999999999999999875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.64  E-value=2.4  Score=41.10  Aligned_cols=181  Identities=14%  Similarity=0.010  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375           62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA  141 (444)
Q Consensus        62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA  141 (444)
                      -+.++..+|.+|.+.|+.++-..........=..+.-.-+..+.+.+-....  .                ++ +..+.-
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~--~----------------~~-~~~~~~   78 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFL--D----------------MD-AGTGIE   78 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHT--T----------------SC-CCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHh--c----------------CC-CcHHHH
Confidence            3578899999999999999999988877554111121112222222222211  0                01 122333


Q ss_pred             HHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCC--CHHHHHHHHHHHHHCCCc
Q 013375          142 ILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELLPG----IIN--RKERYHILALCYYGAGED  211 (444)
Q Consensus       142 i~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~l~~~g~~  211 (444)
                      +.+...++...   .+.+-..    +-..+|..|...|++.+|...+.+.++-    +..  -.+.+..-..+|...|++
T Consensus        79 ~~~~~~~~~~a---~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~  155 (394)
T 3txn_A           79 VQLCKDCIEWA---KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL  155 (394)
T ss_dssp             HHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH
Confidence            33332221110   1011111    1227899999999999998888777642    211  235666678889999999


Q ss_pred             hHHHHHHHHhhcC--C--CCCCChHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCC
Q 013375          212 LVALNLLRTLLSG--S--EDPKCLPALLIASKICGE-YPDLAEEGATFASRALECLGD  264 (444)
Q Consensus       212 ~~A~~~~~~al~~--~--~~P~~~~a~~~~~~~~~~-~~~~~~eA~~~~~~al~~~~~  264 (444)
                      .++...|.++.+.  .  .+|.-...+...+++++. ..+++++|..+|-.+++-.+.
T Consensus       156 ~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~  213 (394)
T 3txn_A          156 PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS  213 (394)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence            9999999988621  1  122211223344566666 789999999999998875543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.43  E-value=0.62  Score=45.23  Aligned_cols=60  Identities=10%  Similarity=-0.120  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      +...++..+...|++++|+..+.+++..+|-+ -.+|..+-.++...|+..+|+..|++.-
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556677788999999999999999999998 4899999999999999999999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.42  E-value=1.3  Score=46.61  Aligned_cols=48  Identities=8%  Similarity=0.011  Sum_probs=38.7

Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .....|++++|.+..+.     .+++..|..+|..+...|+++.|+.+|.++=
T Consensus       661 ~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34567899988887542     3578899999999999999999999999876

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.06  E-value=0.5  Score=39.78  Aligned_cols=102  Identities=11%  Similarity=0.032  Sum_probs=75.1

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH--hh--cCCC--
Q 013375          312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL--DQ--TGKW--  385 (444)
Q Consensus       312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al--~~--~P~~--  385 (444)
                      +-|..++--..++.++.-.|.+..|+-.+.+   +   +...+.+..+.++.+.++|..|+..+++.+  +.  +|+.  
T Consensus        28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l---NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~  101 (242)
T 3kae_A           28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L---NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA  101 (242)
T ss_dssp             HC----CTHHHHHHHHHHTTCHHHHHHHHHT---C---CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred             HccCChHHHhhhhhhhhhcchHhHHHHHHHh---c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence            4566667778889999999999998877632   2   225777778999999999999999999999  22  3321  


Q ss_pred             ---------CcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375          386 ---------EQGE-LLRTKAKVQLVQGQLKGAVETYTHLLAALQ  419 (444)
Q Consensus       386 ---------~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~~  419 (444)
                               .+.+ .+..+|.++.+.|..+||+..|.....+.+
T Consensus       102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence                     2333 345679999999999999999988776543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.03  E-value=0.2  Score=50.30  Aligned_cols=80  Identities=10%  Similarity=-0.076  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      ..+..||.+..-...++.|..+|.+|+.++|++ ...++.||.+....|+.-+|+-+|-+++....  ....+..++..+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~--Pf~~a~~nL~~~  229 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKF--PFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB--CCHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCC--CChhHHHHHHHH
Confidence            357789999888899999999999999999999 59999999999999999999999999997655  477778888777


Q ss_pred             HHH
Q 013375          398 QLV  400 (444)
Q Consensus       398 ~~~  400 (444)
                      +..
T Consensus       230 f~~  232 (497)
T 1ya0_A          230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.98  E-value=1.2  Score=37.59  Aligned_cols=99  Identities=18%  Similarity=0.275  Sum_probs=71.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC------------
Q 013375          158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS------------  225 (444)
Q Consensus       158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~------------  225 (444)
                      |..++-..+++..+.-.|.+..++-.+..     -+...+.+.-+.+|....+|..|+.+++..++.+            
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            66666677889999999999998877653     3456777778999999999999999999988322            


Q ss_pred             ---CCCCChHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013375          226 ---EDPKCLPALL-IASKICGEYPDLAEEGATFASRALECL  262 (444)
Q Consensus       226 ---~~P~~~~a~~-~~~~~~~~~~~~~~eA~~~~~~al~~~  262 (444)
                         .+|.+-+... .+|.+| .+.|..+||+.++.+...+.
T Consensus       105 ~ffvd~~DkEfFy~l~a~ll-tq~g~r~EaI~y~~~Sf~~~  144 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLC-TLSGYREEGIGHYVRSFGKS  144 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC
T ss_pred             eeeeccchHHHHHHHHHHHH-HHhcCHHHhhhHhhhhcCCc
Confidence               2344444443 345554 56789999999999887753

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.58  E-value=1.1  Score=38.18  Aligned_cols=98  Identities=12%  Similarity=0.023  Sum_probs=56.8

Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET  373 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~  373 (444)
                      ..|+++.|.+..+    ++  ++...|..||......|+++-|+.+|+++=     + ..   .+..+|...|+.+.-..
T Consensus        17 ~lg~l~~A~e~a~----~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D-~~---~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           17 EYGNLDAALDEAK----KL--NDSITWERLIQEALAQGNASLAEMIYQTQH-----S-FD---KLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HTTCHHHHHHHHH----HH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C-HH---HHHHHHHHHTCHHHHHH
T ss_pred             hcCCHHHHHHHHH----Hh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C-HH---HHHHHHHHhCCHHHHHH
Confidence            4566666666544    33  567888888888888888888888888772     2 12   23344555677665444


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375          374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH  413 (444)
Q Consensus       374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  413 (444)
                      .-+.|....-   + .   ....++..+|+++++++.|.+
T Consensus        82 la~iA~~~g~---~-n---~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           82 MQNIAQTRED---F-G---SMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHTTC---H-H---HHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHCcc---H-H---HHHHHHHHcCCHHHHHHHHHH
Confidence            4444433321   1 1   112233445566666555533

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.06  E-value=1.7  Score=47.21  Aligned_cols=93  Identities=12%  Similarity=-0.084  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-----hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLL-----KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELL  391 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al-----~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~  391 (444)
                      .+..|=..|.+.|++++|...|.+..     ...|+  ...|+.+-..+.+.|+.++|+..|++..+.  .|   |...|
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P---DvvTY  203 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP---DLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---CHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---cHHHH
Confidence            34455556666677777777775432     23454  466776666677777777777777766643  34   44556


Q ss_pred             HHHHHHHHHhCCH-HHHHHHHHHHHH
Q 013375          392 RTKAKVQLVQGQL-KGAVETYTHLLA  416 (444)
Q Consensus       392 ~~la~~~~~~g~~-~~A~~~~~~al~  416 (444)
                      ..+-..+.+.|+. ++|...+++..+
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            5565666666663 566666666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.89  E-value=4.2  Score=42.73  Aligned_cols=76  Identities=9%  Similarity=-0.083  Sum_probs=53.2

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCChHHHHHHHHHHHHcc
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSNLKGWLLMARILSAQK  366 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~~~~~~la~~l~~~g  366 (444)
                      .|++++|.+..+      ..+++..|-.+|..+.+.|+++.|+.+|.++=.        ...++ .+.+..++.+....|
T Consensus       665 ~~~~~~A~~~~~------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~-~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          665 VGQLTLARDLLT------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN-KEGLVTLAKDAETTG  737 (814)
T ss_dssp             HTCHHHHHHHHT------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-HHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHH------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC-HHHHHHHHHHHHHcC
Confidence            367788877633      346789999999999999999999999998622        22333 245555666666666


Q ss_pred             CHHHHHHHHHH
Q 013375          367 RYEDAETILNA  377 (444)
Q Consensus       367 ~~~eA~~~~~~  377 (444)
                      ++..|..+|.+
T Consensus       738 ~~~~A~~~~~~  748 (814)
T 3mkq_A          738 KFNLAFNAYWI  748 (814)
T ss_dssp             CHHHHHHHHHH
T ss_pred             chHHHHHHHHH
Confidence            66666655433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.57  E-value=0.91  Score=41.34  Aligned_cols=57  Identities=12%  Similarity=0.038  Sum_probs=53.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .+.+.|++++|+......++-+|.+ +.....+-.++.-.|+++.|...++-+.+++|
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p   62 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFP   62 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            3556799999999999999999999 69999999999999999999999999999999

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.65  E-value=0.87  Score=44.82  Aligned_cols=118  Identities=16%  Similarity=0.040  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      +++.+..+++-. ..+..-..++..+|..|.+.|++++|.+.|.++.....  ++..+.+.....+....+++..+...+
T Consensus       113 l~~~~~~~~~~~-~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~  191 (429)
T 4b4t_R          113 LNEKIQKLEEDD-EGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKL  191 (429)
T ss_dssp             HHHHHHHHHHCC-SCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHhhc-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            444444443322 23333456789999999999999999999999987553  333467777888888899999999999


Q ss_pred             HHHHhhcCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          376 NAALDQTGKWEQ----GELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       376 ~~al~~~P~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      .++-.......+    ..+....|.++...++|.+|...|-.++.
T Consensus       192 ~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          192 EAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            998765321122    23445667778889999999998877654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.76  E-value=0.16  Score=50.81  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=59.3

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHH--------------HHHHH-HhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375          311 STNMRDLSILYRLSLEYAEQRKLNAAHY--------------YAKML-LKLEGGSNLKGWLLMARILSAQKRYEDAETIL  375 (444)
Q Consensus       311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~--------------~~~~a-l~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~  375 (444)
                      .+|+=.+.+|++.+.++...|+......              .++.| +..|++..+..|+.+-..|...+.|+.|....
T Consensus       175 tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lv  254 (523)
T 4b4t_S          175 SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFI  254 (523)
T ss_dssp             ----------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHH
Confidence            4566778889999998888887765432              22222 23344433467888888899999999999999


Q ss_pred             HHHHhhcCCC--Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          376 NAALDQTGKW--EQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       376 ~~al~~~P~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      .++.  +|..  .+   ...+|..|.+..-+++|.+|.+++..|+..+|...
T Consensus       255 sk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          255 SKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            9884  5521  11   45667889999999999999999999998777543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.18  E-value=11  Score=31.89  Aligned_cols=56  Identities=21%  Similarity=0.190  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      .|++..+.++   ...|+++.|.+..+..     ++..-|..||...+..|+++-|+.+|+++=
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            4555544443   4679999999888765     678899999999999999999999999876

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.25  E-value=3.4  Score=44.96  Aligned_cols=96  Identities=10%  Similarity=-0.030  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS  238 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~  238 (444)
                      .|+.+-..|++.|+.++|...|+..-..    -..+...|+.|-..|.+.|+.++|..+|++-.+....||....-....
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            3455555666666666666666443211    123455666666666666666666666666554345554332222222


Q ss_pred             HHHhcCCCC-HHHHHHHHHHHHH
Q 013375          239 KICGEYPDL-AEEGATFASRALE  260 (444)
Q Consensus       239 ~~~~~~~~~-~~eA~~~~~~al~  260 (444)
                      +.|  +.|+ .++|...+++..+
T Consensus       209 glc--K~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          209 CMG--RQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHH--HHTCCHHHHHHHHHHHHH
T ss_pred             HHH--hCCCcHHHHHHHHHHHHH
Confidence            222  1233 3455566655555

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.09  E-value=0.79  Score=45.90  Aligned_cols=141  Identities=10%  Similarity=0.093  Sum_probs=58.9

Q ss_pred             HhcCCCCHHHHHHHHHHHH--HHcCC----CcchhhhHHHHHhhhhhhhhhhhhhchH--HHHh-hHHHHHHHHHHHHHh
Q 013375          241 CGEYPDLAEEGATFASRAL--ECLGD----GCDQMESTANCLLGISLSAQSKVAITDF--DRAT-RQAKALQALVSAARS  311 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al--~~~~~----~~~~~~~~a~~~lg~~~~~~~~~~~~~~--~~~~-~~~eA~~~~~~al~~  311 (444)
                      ++...+++++|..+....+  +.+..    .-+...+..|++.+.++...+.......  .... =...=+..++.+.-.
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3444566666666665544  22211    1123456788888887766543211000  0000 001223455555402


Q ss_pred             hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          312 TNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       312 ~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .|+.. +..++-+=..|...+.++.|.....++.  .|...      +..++.+|.++..+++|.+|..++..|+...|
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            23332 2344556677888999999999999995  45421      24456789999999999999999999999887

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.23  E-value=19  Score=35.35  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCC----hHHHHHHHHHHHHccCHHHHHHHHHHHHh---hcCCCCc--H
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL-EGGSN----LKGWLLMARILSAQKRYEDAETILNAALD---QTGKWEQ--G  388 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~----~~~~~~la~~l~~~g~~~eA~~~~~~al~---~~P~~~~--~  388 (444)
                      ....|+.++...|++.+|...+.....- .-.+.    .+.+.....++...+++..|...+.++..   ..+.+..  .
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            3467888999999999999999887532 11111    35677778888899999999999988742   1220011  3


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ..+...|.++...++|.+|-.+|..+++.....
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~  251 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK  251 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence            455677888999999999999999998866543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.94  E-value=25  Score=32.70  Aligned_cols=41  Identities=2%  Similarity=-0.205  Sum_probs=30.2

Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375          179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      +|+..-.+.-...-++++.|..+|..|...|++.+|..+|-
T Consensus       118 ~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          118 GMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            34444333333345789999999999999999999999886

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.39  E-value=4.3  Score=45.15  Aligned_cols=103  Identities=16%  Similarity=0.057  Sum_probs=78.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hcCC-------------------C--ChHHHHHHHHHHHH
Q 013375          307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK-LEGG-------------------S--NLKGWLLMARILSA  364 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~-------------------~--~~~~~~~la~~l~~  364 (444)
                      ..+ ..-|.++-.-|-+|.++...|++++|..+|++|-. +.++                   .  ....|..+..++..
T Consensus       833 ~l~-~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~  911 (1139)
T 4fhn_B          833 QLI-GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE  911 (1139)
T ss_dssp             HHH-HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred             HHh-hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH
Confidence            345 56788888889999999999999999999998732 1111                   0  01356677788888


Q ss_pred             ccCHHHHHHHHHHHHhhcCCCCcH----HHHHHHHHHHHHhCCHHHHHHHH
Q 013375          365 QKRYEDAETILNAALDQTGKWEQG----ELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~~P~~~~~----~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      .|.++.++.....|++..+. ++.    ..|.++=+.....|+|++|-.+.
T Consensus       912 ~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL  961 (1139)
T 4fhn_B          912 ESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVAL  961 (1139)
T ss_dssp             TSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred             cCCHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence            99999999999999987642 232    36777777888999999986555

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.25  E-value=9.8  Score=42.28  Aligned_cols=55  Identities=13%  Similarity=0.076  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375          164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL  222 (444)
Q Consensus       164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al  222 (444)
                      ...+...+...|+++-+.+.    +...|.++..-|-+|.++...|++++|..+|+++-
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa  869 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  869 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            33455567777888766553    34456677778999999999999999999999986

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=81.65  E-value=19  Score=29.22  Aligned_cols=80  Identities=14%  Similarity=-0.012  Sum_probs=62.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375          134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV  213 (444)
Q Consensus       134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~  213 (444)
                      +.++...-+..+         .+...+.+....--..+..+|+-++-...+...+.-++-+++..+.+|.+|.+.|+..+
T Consensus        73 ~C~NlKrVi~C~---------~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~  143 (172)
T 1wy6_A           73 KCQNLKSVVECG---------VINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERD  143 (172)
T ss_dssp             GCSCTHHHHHHH---------HHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhhcHHHHHHHH---------HHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhh
Confidence            456666666553         12244555555555678899999999999999888888899999999999999999999


Q ss_pred             HHHHHHHhh
Q 013375          214 ALNLLRTLL  222 (444)
Q Consensus       214 A~~~~~~al  222 (444)
                      |...+.+|.
T Consensus       144 a~eLl~~AC  152 (172)
T 1wy6_A          144 ATTLLIEAC  152 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999998

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.51  E-value=4.5  Score=39.64  Aligned_cols=102  Identities=13%  Similarity=-0.024  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH---H
Q 013375          162 SILDHLSFAFSIAGDLSSLATQIEELLPGI---INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL---L  235 (444)
Q Consensus       162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~---~  235 (444)
                      .++..+|..+.+.|++++|.++|.++....   ....+.++....++...+++..+...+.++-.......++...   -
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            477899999999999999999999987543   3457889999999999999999999999975201122222221   1


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLG  263 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~  263 (444)
                      ...++.+...+++.+|...|-.++....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            1223344557899999999988887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.83
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.69
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.64
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.64
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.62
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.6
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.59
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.55
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.44
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.26
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.21
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.92
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.42
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.37
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.34
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.64
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.58
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.02
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	84.53
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	82.85
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.57

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=286.25  Aligned_cols=342  Identities=16%  Similarity=0.095  Sum_probs=197.2

Q ss_pred             HHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013375           14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC   93 (444)
Q Consensus        14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~   93 (444)
                      +.+|..+++.|+|++|++.|+++++.        .|.+           ..++..+|.+|.+.|++++|+..|+++++. 
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-   62 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQ--------EPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-   62 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            46788899999999999999999876        3432           257888899999999999999999999998 


Q ss_pred             CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH------------------------
Q 013375           94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL------------------------  149 (444)
Q Consensus        94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~------------------------  149 (444)
                         +|.+... ...++..+..                    .|++++|+..+....                        
T Consensus        63 ---~p~~~~a-~~~l~~~~~~--------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (388)
T d1w3ba_          63 ---NPLLAEA-YSNLGNVYKE--------------------RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME  118 (388)
T ss_dssp             ---CTTCHHH-HHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS
T ss_pred             ---CCCCHHH-HHHHHHHhhh--------------------hcccccccccccccccccccccccccccccccccccccc
Confidence               5544332 2344444332                    233444443321110                        


Q ss_pred             -----HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcC
Q 013375          150 -----RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG  224 (444)
Q Consensus       150 -----~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~  224 (444)
                           ........+.........+......+....+...+.+.+...|+++.++..+|..+...|++++|...+++++  
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--  196 (388)
T d1w3ba_         119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--  196 (388)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--
T ss_pred             ccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHH--
Confidence                 0011122233333444444445555555555555555555555555555555555555555555555555555  


Q ss_pred             CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013375          225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA  304 (444)
Q Consensus       225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~  304 (444)
                      ..+|+++.++..+|.++ ...|++++|+..+++++...+..     ...+..+|.++...           |++++|+..
T Consensus       197 ~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~  259 (388)
T d1w3ba_         197 TLDPNFLDAYINLGNVL-KEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVYYEQ-----------GLIDLAIDT  259 (388)
T ss_dssp             HHCTTCHHHHHHHHHHH-HTTTCTTHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHH
T ss_pred             HhCcccHHHHHHHhhhh-hccccHHHHHHHHHHhHHHhhhH-----HHHHHHHHHHHHHC-----------CCHHHHHHH
Confidence            55555555555554443 23455555555555555533222     33445555555432           345555555


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013375          305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       305 ~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~  384 (444)
                      |++++ +++|+++.+++++|.++...|++++|+..+++++...|.+ ...+..+|.++..+|++++|+..|+++++.+| 
T Consensus       260 ~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-  336 (388)
T d1w3ba_         260 YRRAI-ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-  336 (388)
T ss_dssp             HHHHH-HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-
T ss_pred             HHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc-chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence            55555 5555555555555555555555555555555555555555 35555555555555555555555555555555 


Q ss_pred             CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375          385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~  422 (444)
                       +++.+++++|.++..+|++++|+..|++++++.|++.
T Consensus       337 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         337 -EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             -TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence             5555555555555555555555555555555555443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=281.08  Aligned_cols=342  Identities=17%  Similarity=0.086  Sum_probs=282.8

Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375           10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA   89 (444)
Q Consensus        10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a   89 (444)
                      .++++.+|.++.++|++++|+..|+++|+.        .|..           ..++..+|.+|...|++++|+..|.++
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~-----------~~a~~~l~~~~~~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL-----------AEAYSNLGNVYKERGQLQEAIEHYRHA   93 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHhhhhccccccccccccc
Confidence            568999999999999999999999999987        3442           358889999999999999999999999


Q ss_pred             hCcCCCCChHHHHHHHHHHHHHHhhhcCCCC------------CCc--cccccCccccCCCcHHHHHHHHHHHHHHHHHh
Q 013375           90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETC------------PPN--LRSQMGSSFVPRNNIEEAILLLMILLRKVALK  155 (444)
Q Consensus        90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~------------~~~--~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~  155 (444)
                      ++.    +|...... ...............            +..  ............+....+...+     ...+.
T Consensus        94 ~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  163 (388)
T d1w3ba_          94 LRL----KPDFIDGY-INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY-----LKAIE  163 (388)
T ss_dssp             HHH----CTTCHHHH-HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH-----HHHHH
T ss_pred             ccc----cccccccc-ccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH-----HHhhc
Confidence            998    33322211 111111111111000            000  0001111222333444444432     34567


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      ..|+++.++..+|..+...|++++|...++++++.+|+++++|..+|.++...|++++|+..|++++  ..+|.+...+.
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~  241 (388)
T d1w3ba_         164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL--SLSPNHAVVHG  241 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH--HHCTTCHHHHH
T ss_pred             cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhH--HHhhhHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999999  89999999998


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375          236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR  315 (444)
Q Consensus       236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~  315 (444)
                      .+|.++.. .|++++|+..|+++++..|.+     ..+++.+|.++...           +++++|++.|++++ ...|.
T Consensus       242 ~l~~~~~~-~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~  303 (388)
T d1w3ba_         242 NLACVYYE-QGLIDLAIDTYRRAIELQPHF-----PDAYCNLANALKEK-----------GSVAEAEDCYNTAL-RLCPT  303 (388)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHTCSSC-----HHHHHHHHHHHHHH-----------SCHHHHHHHHHHHH-HHCTT
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHhhh-ccCCc
Confidence            88877654 689999999999999965443     56889999998764           67899999999999 99999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA  395 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la  395 (444)
                      ++.++..+|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|++|++++|  +++.+|.++|
T Consensus       304 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~lg  380 (388)
T d1w3ba_         304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG  380 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT--TCHHHHHHHH
T ss_pred             cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence            99999999999999999999999999999999999 59999999999999999999999999999999  8999999999


Q ss_pred             HHHHHhCC
Q 013375          396 KVQLVQGQ  403 (444)
Q Consensus       396 ~~~~~~g~  403 (444)
                      .++.++|+
T Consensus       381 ~~~~~~~D  388 (388)
T d1w3ba_         381 NTLKEMQD  388 (388)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHcCC
Confidence            99999885

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-29  Score=242.16  Aligned_cols=252  Identities=13%  Similarity=0.074  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      ....+..|..+...|++++|+..|+++++.+|+++++|+.+|.++...|++++|+..|.+++  .++|+++.++..+|.+
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~   96 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL--ELKPDNQTALMALAVS   96 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh--cccccccccccccccc
Confidence            33456789999999999999999999999999999999999999999999999999999999  8999999988887766


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCcchhh----hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC
Q 013375          241 CGEYPDLAEEGATFASRALECLGDGCDQME----STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD  316 (444)
Q Consensus       241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~  316 (444)
                      + ...|++++|+..+++++...|.......    ......++......     ......+.+.+|+..|++++ .++|++
T Consensus        97 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~al-~~~p~~  169 (323)
T d1fcha_          97 F-TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL-----GSLLSDSLFLEVKELFLAAV-RLDPTS  169 (323)
T ss_dssp             H-HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT-----HHHHHHHHHHHHHHHHHHHH-HHSTTS
T ss_pred             c-cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhH-----HHHHHhhHHHHHHHHHHHHH-HHhhcc
Confidence            5 4578899999999999986544321110    00111111111110     01134567899999999999 999974


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013375          317 --LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK  394 (444)
Q Consensus       317 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l  394 (444)
                        +.+++.+|.++...|++++|+..|++++..+|++ ..+|..+|.++..+|++++|+.+|+++++.+|  +++.+|+++
T Consensus       170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~l  246 (323)
T d1fcha_         170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNL  246 (323)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHhhhhccccccccccccc-ccchhhhhhcccccccchhHHHHHHHHHHHhh--ccHHHHHHH
Confidence              6788999999999999999999999999999999 59999999999999999999999999999999  899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          395 AKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       395 a~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      |.++..+|++++|+..|++++++.|+..+.
T Consensus       247 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         247 GISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            999999999999999999999999987654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-29  Score=237.40  Aligned_cols=261  Identities=15%  Similarity=0.079  Sum_probs=218.5

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375          131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE  210 (444)
Q Consensus       131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~  210 (444)
                      .+...|++++|+..+     +.+++.+|+++++|..+|.++...|++++|+.+|+++++++|+++..|+.+|.++...|+
T Consensus        28 ~~~~~g~~~~A~~~~-----~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          28 RRLQEGDLPNAVLLF-----EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHTTCHHHHHHHH-----HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            345678999999986     667899999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcCCCCCCChHHHHHHHHH--------------HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013375          211 DLVALNLLRTLLSGSEDPKCLPALLIASKI--------------CGEYPDLAEEGATFASRALECLGDGCDQMESTANCL  276 (444)
Q Consensus       211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~--------------~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~  276 (444)
                      +++|+..|++++  ..+|+...........              .+...+.+.+|+..|+++++..|...   ...++..
T Consensus       103 ~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~---~~~~~~~  177 (323)
T d1fcha_         103 QRQACEILRDWL--RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI---DPDVQCG  177 (323)
T ss_dssp             HHHHHHHHHHHH--HTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC---CHHHHHH
T ss_pred             ccccccchhhHH--HhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc---ccccchh
Confidence            999999999999  8999865432110000              00112467789999999999755432   2567888


Q ss_pred             hhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHH
Q 013375          277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL  356 (444)
Q Consensus       277 lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  356 (444)
                      +|.++...           |++++|+..|++++ ..+|+++.+|+++|.++..+|++++|+..|+++++++|++ ..+|.
T Consensus       178 l~~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~  244 (323)
T d1fcha_         178 LGVLFNLS-----------GEYDKAVDCFTAAL-SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IRSRY  244 (323)
T ss_dssp             HHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred             hHHHHHHH-----------HHHhhhhccccccc-ccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc-HHHHH
Confidence            89888664           67999999999999 9999999999999999999999999999999999999999 59999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          357 LMARILSAQKRYEDAETILNAALDQTGKWEQGE-----------LLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       357 ~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      ++|.++..+|++++|+..|++|++++|  ++..           +|..++.++..+|+.+.+...-.+.|+
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l~  313 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALNMQR--KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS  313 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHH--TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC--cChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCHH
Confidence            999999999999999999999999999  5544           455667777777777666555544443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=220.96  Aligned_cols=246  Identities=11%  Similarity=0.066  Sum_probs=216.6

Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHhhcCCCCCCChHH
Q 013375          155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDPKCLPA  233 (444)
Q Consensus       155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~-~~~A~~~~~~al~~~~~P~~~~a  233 (444)
                      ..+|+..+++..+|.++.+.+++++|+++|+++|+++|++..+|+++|.++...|+ +++|+..+++++  ..+|++..+
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al--~~~p~~~~a  114 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--EEQPKNYQV  114 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHH--HHHHhhhhH
Confidence            34577888999999999999999999999999999999999999999999999885 899999999999  899999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375          234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN  313 (444)
Q Consensus       234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~  313 (444)
                      +...|.++ ...|++++|+.++++++++.|.+     ..+|+++|.++...           +++++|++.|++++ +++
T Consensus       115 ~~~~~~~~-~~l~~~~eAl~~~~kal~~dp~n-----~~a~~~~~~~~~~~-----------~~~~~Al~~~~~al-~~~  176 (315)
T d2h6fa1         115 WHHRRVLV-EWLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF-----------KLWDNELQYVDQLL-KED  176 (315)
T ss_dssp             HHHHHHHH-HHHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HHC
T ss_pred             HHHHhHHH-HhhccHHHHHHHHhhhhhhhhcc-----hHHHHHHHHHHHHH-----------HhhHHHHHHHHHHH-HHC
Confidence            99888775 55789999999999999976554     57999999999765           56899999999999 999


Q ss_pred             CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013375          314 MRDLSILYRLSLEYAEQRK------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ  387 (444)
Q Consensus       314 P~~~~a~~~lg~~~~~~g~------~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~  387 (444)
                      |+|..+|+++|.++...++      +++|+..+.+++.++|++ ..+|+.++.++... ..+++...+++++++.|++.+
T Consensus       177 p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~-~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~  254 (315)
T d2h6fa1         177 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSS  254 (315)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCC
T ss_pred             CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc-hHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCC
Confidence            9999999999999998876      689999999999999999 59999999987544 468899999999999995455


Q ss_pred             HHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhh
Q 013375          388 GELLRTKAKVQLV--QGQLKGAVETYTHLLAALQVQT  422 (444)
Q Consensus       388 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~l~~~~~  422 (444)
                      ..++..++.++..  .++.+.+...+++++++.+...
T Consensus       255 ~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~  291 (315)
T d2h6fa1         255 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA  291 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            6667777777644  4777889999999999877544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.2e-25  Score=211.13  Aligned_cols=213  Identities=8%  Similarity=0.010  Sum_probs=193.7

Q ss_pred             hcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Q 013375          187 LLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC  266 (444)
Q Consensus       187 al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~  266 (444)
                      .+..+|+..+++..+|.++...+++++|+..+++||  .++|++..++...|.++....+++++|+.+++++++..|.+ 
T Consensus        35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai--~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~-  111 (315)
T d2h6fa1          35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAI--ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-  111 (315)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-
T ss_pred             ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-
Confidence            577899999999999999999999999999999999  89999999999998886655556899999999999975544 


Q ss_pred             chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013375          267 DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL  346 (444)
Q Consensus       267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  346 (444)
                          ..+|+.+|.++...           |++++|++.|++++ +++|++..+|+++|.++...|++++|+..|++++++
T Consensus       112 ----~~a~~~~~~~~~~l-----------~~~~eAl~~~~kal-~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         112 ----YQVWHHRRVLVEWL-----------RDPSQELEFIADIL-NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             ----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ----hhHHHHHhHHHHhh-----------ccHHHHHHHHhhhh-hhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                68999999998764           67899999999999 999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHccC------HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          347 EGGSNLKGWLLMARILSAQKR------YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       347 ~P~~~~~~~~~la~~l~~~g~------~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      +|.+ ..+|.++|.++...++      +++|+..+.++++.+|  ++..+|++++.++... ..+++...+++++++.|+
T Consensus       176 ~p~n-~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P--~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         176 DVRN-NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             CTTC-HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT
T ss_pred             CCcc-HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC--CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC
Confidence            9999 5999999999988876      6899999999999999  8999999999987654 468999999999998886


Q ss_pred             hh
Q 013375          421 QT  422 (444)
Q Consensus       421 ~~  422 (444)
                      ..
T Consensus       252 ~~  253 (315)
T d2h6fa1         252 HS  253 (315)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.1e-24  Score=207.47  Aligned_cols=291  Identities=8%  Similarity=-0.094  Sum_probs=231.0

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013375           64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL  143 (444)
Q Consensus        64 ~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~  143 (444)
                      .+...+.......+..++|+..|+++|+.    +|++...+... ..++....          ..+..+...+++++|+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~al~~~~~~l~~----~P~~~~a~~~r-~~~l~~l~----------~~~~~~~~~~~~~~al~   94 (334)
T d1dcea1          30 SATQAVFQKRQAGELDESVLELTSQILGA----NPDFATLWNCR-REVLQHLE----------TEKSPEESAALVKAELG   94 (334)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHH-HHHHHHHH----------TTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHH----CCCcHHHHHHH-HHHHHHHh----------hhcchHHHHHHHHHHHH
Confidence            34444444444455569999999999999    66554333111 11111111          11123344566788887


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHhhcCCCCCCHHHHH-HHHHHHHHCCCchHHHHHHHH
Q 013375          144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGD--LSSLATQIEELLPGIINRKERYH-ILALCYYGAGEDLVALNLLRT  220 (444)
Q Consensus       144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~--~~~A~~~~~~al~~~p~~~~~~~-~la~~l~~~g~~~~A~~~~~~  220 (444)
                      .+     +.++..+|+++.+|.++|.++...++  +++|+..+++++..+|.+..+|. ..|.++...|++++|+..+++
T Consensus        95 ~~-----~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~  169 (334)
T d1dcea1          95 FL-----ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS  169 (334)
T ss_dssp             HH-----HHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred             HH-----HHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHH
Confidence            64     66788999999999999999998775  79999999999999999999875 678999999999999999999


Q ss_pred             hhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHH
Q 013375          221 LLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK  300 (444)
Q Consensus       221 al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~e  300 (444)
                      ++  ..+|++..++..+|.++ ...|++++|+..++++++..+..     .......+               ..+..++
T Consensus       170 ~i--~~~p~~~~a~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~---------------~l~~~~~  226 (334)
T d1dcea1         170 LI--TRNFSNYSSWHYRSCLL-PQLHPQPDSGPQGRLPENVLLKE-----LELVQNAF---------------FTDPNDQ  226 (334)
T ss_dssp             TT--TTTCCCHHHHHHHHHHH-HHHSCCCCSSSCCSSCHHHHHHH-----HHHHHHHH---------------HHCSSCS
T ss_pred             HH--HcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHhHHhHHHH-----HHHHHHHH---------------HhcchhH
Confidence            99  99999999999887765 45788888988888888854321     11111111               1234578


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      +...|.+++ ..+|+++.++..+|.++...|++.+|+..+.+++..+|++ ..+|..+|.++...|++++|+.+|+++++
T Consensus       227 a~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         227 SAWFYHRWL-LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             HHHHHHHHH-HSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999 9999999999999999999999999999999999999998 59999999999999999999999999999


Q ss_pred             hcCCCCcHHHHHHHHHHHHHh
Q 013375          381 QTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       381 ~~P~~~~~~~~~~la~~~~~~  401 (444)
                      ++|  ++...|..++..+...
T Consensus       305 ldP--~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         305 VDP--MRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HCG--GGHHHHHHHHHHHHHH
T ss_pred             HCc--ccHHHHHHHHHHHhHh
Confidence            999  8999999898877653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=8e-25  Score=210.36  Aligned_cols=256  Identities=9%  Similarity=-0.085  Sum_probs=223.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 013375          137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA----------GDLSSLATQIEELLPGIINRKERYHILALCYY  206 (444)
Q Consensus       137 ~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~  206 (444)
                      ..++|+..+     +.++..+|++.++|+.++.++...          |++++|+..|+++++.+|+++.+|+.+|.++.
T Consensus        44 ~~~~al~~~-----~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          44 LDESVLELT-----SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             CSHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            347888764     567889999999998887776644          34789999999999999999999999999999


Q ss_pred             HCCC--chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375          207 GAGE--DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ  284 (444)
Q Consensus       207 ~~g~--~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  284 (444)
                      ..++  +++|+..+.+++  ..+|++..++....+.++...+..++|+.+++++++..|.+     ..+|+++|.++...
T Consensus       119 ~~~~~~~~~a~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~-----~~a~~~l~~~~~~~  191 (334)
T d1dcea1         119 RLPEPNWARELELCARFL--EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQL  191 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-----HHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHH--hhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHh
Confidence            9876  789999999999  89999999887667777777899999999999999965443     57899999999765


Q ss_pred             hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013375          285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA  364 (444)
Q Consensus       285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~  364 (444)
                                 |++++|+..+++++ .+.|.+...+..    +...+..++|...|.+++..+|++. ..+..+|.++..
T Consensus       192 -----------~~~~~A~~~~~~~~-~~~~~~~~~~~~----~~~l~~~~~a~~~~~~~l~~~~~~~-~~~~~l~~~~~~  254 (334)
T d1dcea1         192 -----------HPQPDSGPQGRLPE-NVLLKELELVQN----AFFTDPNDQSAWFYHRWLLGRAEPL-FRCELSVEKSTV  254 (334)
T ss_dssp             -----------SCCCCSSSCCSSCH-HHHHHHHHHHHH----HHHHCSSCSHHHHHHHHHHSCCCCS-SSCCCCHHHHHH
T ss_pred             -----------cCHHHHHHHHHHhH-HhHHHHHHHHHH----HHHhcchhHHHHHHHHHHHhCcchh-hHHHHHHHHHHH
Confidence                       45778888888888 888877665554    3456888899999999999999985 899999999999


Q ss_pred             ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       365 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      .|++++|+..+.+++..+|  ++..+++.+|.++..+|++++|+..|++++++.|.+.+
T Consensus       255 ~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         255 LQSELESCKELQELEPENK--WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HhhHHHHHHHHHHHHhhCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            9999999999999999999  89999999999999999999999999999999997765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5e-22  Score=182.72  Aligned_cols=207  Identities=11%  Similarity=-0.011  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS  238 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~  238 (444)
                      ....+++.+|.+|...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++  .++|+++.++..+|
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL--ELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH--HHHhhhhhhHHHHH
Confidence            3556999999999999999999999999999999999999999999999999999999999999  89999999999888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375          239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS  318 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~  318 (444)
                      .++. ..|++++|+..++++++..|.+     ...+..++.++...           +..+.+........ ..++.++.
T Consensus       113 ~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~  174 (259)
T d1xnfa_         113 IALY-YGGRDKLAQDDLLAFYQDDPND-----PFRSLWLYLAEQKL-----------DEKQAKEVLKQHFE-KSDKEQWG  174 (259)
T ss_dssp             HHHH-HTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------CHHHHHHHHHHHHH-HSCCCSTH
T ss_pred             HHHH-HHhhHHHHHHHHHHHHhhcccc-----HHHHHHHHHHHHHh-----------hhHHHHHHHHHHhh-ccchhhhh
Confidence            7754 5799999999999999976544     23444555544432           22333344444444 55555542


Q ss_pred             HH---HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          319 IL---YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       319 a~---~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      ..   +.++. ....+..+.+...+...+.+.|+. ..+|+.+|.++..+|++++|+.+|++|+..+|  ++..
T Consensus       175 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~  244 (259)
T d1xnfa_         175 WNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHL-SETNFYLGKYYLSLGDLDSATALFKLAVANNV--HNFV  244 (259)
T ss_dssp             HHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--TTCH
T ss_pred             hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHH
Confidence            11   11111 123455777888888888899988 59999999999999999999999999999999  6643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5e-21  Score=175.93  Aligned_cols=222  Identities=16%  Similarity=0.059  Sum_probs=181.0

Q ss_pred             CHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013375          176 DLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG  251 (444)
Q Consensus       176 ~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA  251 (444)
                      +.+.|+..+++++..    +|..+.+|+++|.+|...|++++|+..|+++|  .++|+++.++..+|.++ ...|++++|
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al--~l~p~~~~a~~~lg~~~-~~~g~~~~A   90 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYL-TQAGNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHH-HHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhh--ccCCCCHHHHhhhchHH-HHHHHHHHh
Confidence            445555556666653    34567799999999999999999999999999  89999999999888765 557999999


Q ss_pred             HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013375          252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR  331 (444)
Q Consensus       252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g  331 (444)
                      +..|++++++.|.+     ..+++.+|.++..+           |++++|++.|++++ +++|++......++..+...+
T Consensus        91 ~~~~~~al~~~p~~-----~~a~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_          91 YEAFDSVLELDPTY-----NYAHLNRGIALYYG-----------GRDKLAQDDLLAFY-QDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHCTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHC
T ss_pred             hhhhhHHHHHHhhh-----hhhHHHHHHHHHHH-----------hhHHHHHHHHHHHH-hhccccHHHHHHHHHHHHHhh
Confidence            99999999976544     56899999998765           67899999999999 999999999999999999988


Q ss_pred             CHHHHHHHHHHHHhhcCCCChHHHHHHHHH---HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 013375          332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARI---LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV  408 (444)
Q Consensus       332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~---l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~  408 (444)
                      ..+.+..........++..  ..+......   ....+.++.+...+..++...|  +...+|+++|.++..+|++++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~  229 (259)
T d1xnfa_         154 EKQAKEVLKQHFEKSDKEQ--WGWNIVEFYLGNISEQTLMERLKADATDNTSLAE--HLSETNFYLGKYYLSLGDLDSAT  229 (259)
T ss_dssp             HHHHHHHHHHHHHHSCCCS--THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH--HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHhhccchhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--ccHHHHHHHHHHHHHCCCHHHHH
Confidence            8777777777776666654  223222211   1223556777777888888888  78899999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 013375          409 ETYTHLLAALQVQ  421 (444)
Q Consensus       409 ~~~~~al~l~~~~  421 (444)
                      ..|+++++..|+.
T Consensus       230 ~~~~~al~~~p~~  242 (259)
T d1xnfa_         230 ALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999998864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.6e-20  Score=174.44  Aligned_cols=282  Identities=13%  Similarity=-0.034  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013375           63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI  142 (444)
Q Consensus        63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi  142 (444)
                      .+.....+.+++..|++++|+..|+++|..    .|.+..                                   .    
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~----~~~~~~-----------------------------------~----   48 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEE----LPPGWF-----------------------------------Y----   48 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----CCTTCH-----------------------------------H----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CcCCCc-----------------------------------H----
Confidence            345556678899999999999999999988    332100                                   0    


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHHCCCchHHHH
Q 013375          143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN------RKERYHILALCYYGAGEDLVALN  216 (444)
Q Consensus       143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~g~~~~A~~  216 (444)
                                      ....++..+|.++...|++++|+..|++++++.|.      ...++..+|.++...|++..|+.
T Consensus        49 ----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  112 (366)
T d1hz4a_          49 ----------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE  112 (366)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            00124567888999999999999999998876433      24567888999999999999999


Q ss_pred             HHHHhhcCCCCC-----C---ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh
Q 013375          217 LLRTLLSGSEDP-----K---CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA  288 (444)
Q Consensus       217 ~~~~al~~~~~P-----~---~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~  288 (444)
                      .+.+++  .+.+     .   ....+..++.++. ..|+++++...+++++...+.........++...+..+...    
T Consensus       113 ~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  185 (366)
T d1hz4a_         113 TQEKAF--QLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR----  185 (366)
T ss_dssp             HHHHHH--HHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH----
T ss_pred             HHHHHH--HHhHhcccchhhHHHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh----
Confidence            999887  3322     1   1223444555544 46899999999999999766544444455666666666543    


Q ss_pred             hchHHHHhhHHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHH
Q 013375          289 ITDFDRATRQAKALQALVSAARSTNM-------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLM  358 (444)
Q Consensus       289 ~~~~~~~~~~~eA~~~~~~al~~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~l  358 (444)
                             +.+.++...+.++. ...+       ....++..+|.++...|++++|...+++++.+.|.++   ...+.++
T Consensus       186 -------~~~~~a~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         186 -------GDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             -------TCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             -------hhHHHHHHHHHHHH-HHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence                   45666777766666 5432       3345678889999999999999999999999887753   2467789


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh------cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          359 ARILSAQKRYEDAETILNAALDQ------TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~------~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      |.++...|++++|+..+++++..      .|  +...++..+|.++..+|++++|+..|++++++.+.
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMS--DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccCh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999843      35  56789999999999999999999999999999874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.4e-18  Score=164.51  Aligned_cols=318  Identities=15%  Similarity=0.048  Sum_probs=228.6

Q ss_pred             HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHH
Q 013375            6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMS   85 (444)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~   85 (444)
                      =.+-+|....+|.++...|++++|++.|+++|+..        |....      .....++..+|.+|...|++++|+..
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--------~~~~~------~~~~~a~~~lg~~~~~~g~~~~A~~~   73 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL--------PPGWF------YSRIVATSVLGEVLHCKGELTRSLAL   73 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------cCCCc------HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34568889999999999999999999999999762        32210      11235778899999999999999999


Q ss_pred             HHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 013375           86 YRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILD  165 (444)
Q Consensus        86 y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~  165 (444)
                      |+++++.    .+...                                   ..                   +....++.
T Consensus        74 ~~~a~~~----~~~~~-----------------------------------~~-------------------~~~~~~~~   95 (366)
T d1hz4a_          74 MQQTEQM----ARQHD-----------------------------------VW-------------------HYALWSLI   95 (366)
T ss_dssp             HHHHHHH----HHHTT-----------------------------------CH-------------------HHHHHHHH
T ss_pred             HHHHHHH----HHhhc-----------------------------------ch-------------------HHHHHHHH
Confidence            9999987    22110                                   00                   00112345


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-----hH
Q 013375          166 HLSFAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-----LP  232 (444)
Q Consensus       166 ~lg~~l~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-----~~  232 (444)
                      .++.++...|++..|...+.+++.+.        +.....+..+|.++...|+++.|...+.+++  ...+..     ..
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~  173 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI--EVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH--HHhhhhhhhhHHH
Confidence            66777777888888888887776432        2234567778899999999999999998888  444432     22


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc--chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013375          233 ALLIASKICGEYPDLAEEGATFASRALECLGDGC--DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR  310 (444)
Q Consensus       233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~--~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~  310 (444)
                      ++...+..+ ...+...++...+.++........  ......++..+|..+..           .+++++|...+++++ 
T Consensus       174 ~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~-  240 (366)
T d1hz4a_         174 CLAMLIQCS-LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-----------TGDKAAAANWLRHTA-  240 (366)
T ss_dssp             HHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-----------TTCHHHHHHHHHHSC-
T ss_pred             HHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh-----------cccHHHHHHHHHHHH-
Confidence            334444443 345778888888888888654322  12233455666666644           367899999999999 


Q ss_pred             hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375          311 STNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKL------EGGSNLKGWLLMARILSAQKRYEDAETILNAALD  380 (444)
Q Consensus       311 ~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~  380 (444)
                      ...|.+.    ..+.++|.++...|++++|+..+++++..      .|+. ..++..+|.++..+|++++|+..+++|++
T Consensus       241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL-NRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9887763    46678999999999999999999999854      4555 47899999999999999999999999998


Q ss_pred             hcCCCC-------cHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375          381 QTGKWE-------QGELLRTKAKVQLVQGQLKGAVETY  411 (444)
Q Consensus       381 ~~P~~~-------~~~~~~~la~~~~~~g~~~~A~~~~  411 (444)
                      +.++..       ....+..+...+...++.+++....
T Consensus       320 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~  357 (366)
T d1hz4a_         320 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR  357 (366)
T ss_dssp             HHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            765211       1233444555566778888877653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.2e-18  Score=174.23  Aligned_cols=232  Identities=10%  Similarity=-0.059  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375          140 EAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       140 eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      ||+..+     +.++...|+.++++.++|.++..+|++++|   |+++|..+|+.+.++...+.+..  ..|..++..++
T Consensus         4 eA~q~~-----~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYL-----RQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHH-----HHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHH
T ss_pred             HHHHHH-----HHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHH
Confidence            455544     445667799999999999999999999876   89999999988877654443332  24677888899


Q ss_pred             HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH
Q 013375          220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA  299 (444)
Q Consensus       220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  299 (444)
                      +.++....|+................+.++.++..++++++..++     ...++..+|.++...           ++.+
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~-----~~~~~~~lg~~~~~~-----------~~~~  137 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP-----CRVKSSQLGIISNKQ-----------THTS  137 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------------------------------------
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChh-----hHHHHHHhHHHHHhC-----------CCHH
Confidence            888422334443332222122111123344444444444443222     246778888887654           5678


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      +|+..+++++ ..+|.  .++.++|.++...|++++|+.+|++|+.++|++. .+|++||.++...|++.+|+.+|.+|+
T Consensus       138 ~A~~~~~~al-~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~-~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         138 AIVKPQSSSC-SYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             -----CCHHH-HHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999 87774  6889999999999999999999999999999995 999999999999999999999999999


Q ss_pred             hhcCCCCcHHHHHHHHHHHHHhCC
Q 013375          380 DQTGKWEQGELLRTKAKVQLVQGQ  403 (444)
Q Consensus       380 ~~~P~~~~~~~~~~la~~~~~~g~  403 (444)
                      ...|  +.+.++.+++.++.+..+
T Consensus       214 ~~~~--~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         214 AVKF--PFPAASTNLQKALSKALE  235 (497)
T ss_dssp             SSSB--CCHHHHHHHHHHHHHHTT
T ss_pred             hCCC--CCHHHHHHHHHHHHHhhh
Confidence            9999  899999999998876543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3e-19  Score=180.68  Aligned_cols=219  Identities=11%  Similarity=-0.029  Sum_probs=149.4

Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 013375          179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRA  258 (444)
Q Consensus       179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~a  258 (444)
                      +|+++|++|++++|+.+++|+++|.++...|++++|   |+++|  ..+|+...++.....+. .  ..+..++..+++.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i--~~dp~~a~~~~~e~~Lw-~--~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKML--VTDLEYALDKKVEQDLW-N--HAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHH--HHCHHHHHHHTHHHHHH-H--HHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHH--HcChhhHHHHhHHHHHH-H--HHHHHHHHHHHHh
Confidence            789999999999999999999999999999999987   89999  89998776653322221 1  1244677888877


Q ss_pred             HHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013375          259 LECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHY  338 (444)
Q Consensus       259 l~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~  338 (444)
                      ++.. ....... .....++.....           .+.++.|+..|+++. .++|++..++.++|.++...|+.++|+.
T Consensus        76 ~k~~-~~~~~~~-~~~~~~~~l~~a-----------~~~Y~~ai~~l~~~~-~l~~~~~~~~~~lg~~~~~~~~~~~A~~  141 (497)
T d1ya0a1          76 AKNR-ANPNRSE-VQANLSLFLEAA-----------SGFYTQLLQELCTVF-NVDLPCRVKSSQLGIISNKQTHTSAIVK  141 (497)
T ss_dssp             HSCS-SCTTTTH-HHHHHHHHHHHH-----------HHHHHHHHHHHTC-------------------------------
T ss_pred             cccc-cCccHHH-HHHHHHHHHHHH-----------HHHHHHHHHHHHHHH-CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence            7632 2211111 112223333322           357899999999999 9999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013375          339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL  418 (444)
Q Consensus       339 ~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  418 (444)
                      .+++++.++|.   .++..+|.++..+|++++|+.+|++|++++|  +++.+|+++|.++...|+..+|+.+|.+++.+.
T Consensus       142 ~~~~al~~~~~---~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P--~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         142 PQSSSCSYICQ---HCLVHLGDIARYRNQTSQAESYYRHAAQLVP--SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             -CCHHHHHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHhCCCHH---HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            99999988873   7899999999999999999999999999999  999999999999999999999999999999877


Q ss_pred             Hhhhhh
Q 013375          419 QVQTKT  424 (444)
Q Consensus       419 ~~~~~~  424 (444)
                      |....+
T Consensus       217 ~~~~~a  222 (497)
T d1ya0a1         217 FPFPAA  222 (497)
T ss_dssp             BCCHHH
T ss_pred             CCCHHH
Confidence            766553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=8.3e-16  Score=145.16  Aligned_cols=196  Identities=13%  Similarity=-0.007  Sum_probs=140.0

Q ss_pred             hHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhch
Q 013375          212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD  291 (444)
Q Consensus       212 ~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~  291 (444)
                      ++|..+|+++++ ...|++...+...+.+. ...|..++|...|+++++..|.+.    ..+|...+....         
T Consensus        81 ~~a~~i~~ral~-~~~p~~~~l~~~ya~~~-~~~~~~~~a~~i~~~~l~~~~~~~----~~~w~~~~~~~~---------  145 (308)
T d2onda1          81 DEAANIYERAIS-TLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDP----TLVYIQYMKFAR---------  145 (308)
T ss_dssp             HHHHHHHHHHHT-TTTTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSSSSCT----HHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHH-HcCCCCHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHH---------
Confidence            445555555551 12444444444333332 233455555555555554322221    123334443332         


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013375          292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED  370 (444)
Q Consensus       292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e  370 (444)
                        +.+..++|++.|++++ +..|.++..+...|..... .|+.+.|...|++++..+|++ ...|...+..+..+|+++.
T Consensus       146 --~~~~~~~ar~i~~~al-~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~-~~~w~~y~~~~~~~g~~~~  221 (308)
T d2onda1         146 --RAEGIKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNN  221 (308)
T ss_dssp             --HHHCHHHHHHHHHHHH-TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHH
T ss_pred             --HcCChHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHcCChHH
Confidence              2356789999999999 9999999999999987554 689999999999999999999 5999999999999999999


Q ss_pred             HHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013375          371 AETILNAALDQTGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS  426 (444)
Q Consensus       371 A~~~~~~al~~~P~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  426 (444)
                      |..+|++|+...|.+  +...+|..........|+.+.+...++++.++.|+......
T Consensus       222 aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~  279 (308)
T d2onda1         222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE  279 (308)
T ss_dssp             HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccch
Confidence            999999999977611  12457777888888999999999999999999997765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-16  Score=127.86  Aligned_cols=101  Identities=18%  Similarity=0.158  Sum_probs=96.5

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|++++|+..|++++ +++|+++.+|+++|.++..+|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+..
T Consensus        16 ~g~~~eAi~~~~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~   93 (117)
T d1elwa_          16 VGNIDDALQCYSEAI-KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFLNRFEEAKRT   93 (117)
T ss_dssp             TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-hcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHccCHHHHHHH
Confidence            478999999999999 9999999999999999999999999999999999999999 59999999999999999999999


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQL  399 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~  399 (444)
                      |+++++.+|  ++..++..++.+..
T Consensus        94 ~~~a~~~~p--~~~~~~~~l~~l~~  116 (117)
T d1elwa_          94 YEEGLKHEA--NNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHTTCT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHhCC--CCHHHHHHHHHHhC
Confidence            999999999  89999999888753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-16  Score=138.98  Aligned_cols=122  Identities=15%  Similarity=0.052  Sum_probs=110.2

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .+++++|++.|+    ++.|.++.+|+++|.++..+|++++|+..|++|++++|++ ..+|.++|.++..+|+|++|+..
T Consensus        18 ~~d~~~Al~~~~----~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~~~~A~~~   92 (192)
T d1hh8a_          18 KKDWKGALDAFS----AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQTEKYDLAIKD   92 (192)
T ss_dssp             TTCHHHHHHHHH----TSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-hhhHHHHHHHHHhhccHHHHHHH
Confidence            367999999997    4567889999999999999999999999999999999999 59999999999999999999999


Q ss_pred             HHHHHhhcCCC--------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          375 LNAALDQTGKW--------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       375 ~~~al~~~P~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      |++|+...|.+              ...++++++|.++..+|++++|++.+++++.+.|+.
T Consensus        93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999876531              124789999999999999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.7e-16  Score=132.22  Aligned_cols=113  Identities=15%  Similarity=0.060  Sum_probs=101.3

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|++++|+..|++++ +++|+++.+|+++|.++..+|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+..
T Consensus        23 ~~~y~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~~g~~~eA~~~  100 (159)
T d1a17a_          23 AKDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMALGKFRAALRD  100 (159)
T ss_dssp             TTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHhhhcc-ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHHHHcCCHHHHHHH
Confidence            468999999999999 9999999999999999999999999999999999999999 69999999999999999999999


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHH--HhCCHHHHHHHH
Q 013375          375 LNAALDQTGKWEQGELLRTKAKVQL--VQGQLKGAVETY  411 (444)
Q Consensus       375 ~~~al~~~P~~~~~~~~~~la~~~~--~~g~~~~A~~~~  411 (444)
                      +++++.+.|  ++..++..++.+..  ..+.+++|+...
T Consensus       101 ~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_         101 YETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999  89998888776643  334455555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=8.4e-17  Score=150.83  Aligned_cols=206  Identities=7%  Similarity=-0.037  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC------
Q 013375          163 ILDHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------  230 (444)
Q Consensus       163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~------  230 (444)
                      .|...|.++...|++++|+++|++++.+.      ++...+|.++|.+|..+|++++|+..|++++  .+.++.      
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~  116 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh--HHhhhcccchhH
Confidence            45667899999999999999999999872      3345789999999999999999999999999  665554      


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013375          231 LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA  309 (444)
Q Consensus       231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al  309 (444)
                      ..++..++.++....|++++|+.+|++++++.+.. .......++..+|.++..+           |++++|++.|++++
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~-----------g~y~~A~~~~~~~~  185 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-----------GQYIEASDIYSKLI  185 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc-----------ChHHHHHHHHHHHH
Confidence            34566677777677899999999999999875432 2233456788888888664           67999999999999


Q ss_pred             HhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH-----HHHHHHHHHH--ccCHHHHHHHH
Q 013375          310 RSTNMRDL-------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG-----WLLMARILSA--QKRYEDAETIL  375 (444)
Q Consensus       310 ~~~~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~-----~~~la~~l~~--~g~~~eA~~~~  375 (444)
                       ...|.++       ..+.+.|.++...|+++.|...++++++++|..+ ..     ...+...+..  .+++++|+..|
T Consensus       186 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~-~sre~~~l~~l~~a~~~~d~e~~~eai~~y  263 (290)
T d1qqea_         186 -KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-DSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (290)
T ss_dssp             -HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             -HhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             9998876       3567889999999999999999999999999763 33     2334444433  36799999999


Q ss_pred             HHHHhhcC
Q 013375          376 NAALDQTG  383 (444)
Q Consensus       376 ~~al~~~P  383 (444)
                      +++.+++|
T Consensus       264 ~~~~~lD~  271 (290)
T d1qqea_         264 DNFMRLDK  271 (290)
T ss_dssp             TTSSCCCH
T ss_pred             HHHhhcCH
Confidence            98887776

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=140.63  Aligned_cols=165  Identities=10%  Similarity=0.011  Sum_probs=130.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcC
Q 013375          165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY  244 (444)
Q Consensus       165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~  244 (444)
                      .+.|..+...|++++|++.|+++   .|.++.+|+++|.++..+|++++|+..|++||  +++|+++.++..+|.++ ..
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl--~ldp~~~~a~~~~g~~~-~~   82 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLY-YQ   82 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH--HHhhhhhhhHHHHHHHH-Hh
Confidence            35699999999999999999974   56688999999999999999999999999999  89999999999887765 55


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375          245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS  324 (444)
Q Consensus       245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg  324 (444)
                      .|++++|+..|++++...+++..    ..+..+|.                               ...+...++++++|
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~----~~~~~~~~-------------------------------~~~~~~~e~~~n~a  127 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQL----IDYKILGL-------------------------------QFKLFACEVLYNIA  127 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSE----EECGGGTB-------------------------------CCEEEHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCccCch----HHHHHhhh-------------------------------hcccchHHHHHHHH
Confidence            78999999999999986554421    11112222                               12233356789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .++..+|++++|++.+++|+.++|+..             ....+.|+..+.+.....|
T Consensus       128 ~~~~~~~~~~~A~~~l~~A~~~~~~~~-------------~~~~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         128 FMYAKKEEWKKAEEQLALATSMKSEPR-------------HSKIDKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSGG-------------GGHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHhhhhCCc
Confidence            999999999999999999999999852             3445666766666655555

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=5.1e-16  Score=145.40  Aligned_cols=219  Identities=14%  Similarity=0.021  Sum_probs=161.7

Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC------CChHHHHHHHHHHhcCCCCH
Q 013375          175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP------KCLPALLIASKICGEYPDLA  248 (444)
Q Consensus       175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P------~~~~a~~~~~~~~~~~~~~~  248 (444)
                      +++++|.++|.++              |.+|..+|++++|+.+|.+++  .+.+      +...++..+|. ++...|++
T Consensus        31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~--~~~~~~~~~~~~a~~~~~~g~-~y~~~~~~   93 (290)
T d1qqea_          31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA--DYQKKAGNEDEAGNTYVEAYK-CFKSGGNS   93 (290)
T ss_dssp             HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHH-HHHHTTCH
T ss_pred             ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHHHH-HHHHhCCc
Confidence            4578888776654              899999999999999999999  5522      22234555554 56678999


Q ss_pred             HHHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHH
Q 013375          249 EEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILY  321 (444)
Q Consensus       249 ~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~  321 (444)
                      ++|+.+|++++++.+... ......++..+|.++...          .+++++|++.|++++ ++.+.+      ..++.
T Consensus        94 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~A~-~l~~~~~~~~~~~~~~~  162 (290)
T d1qqea_          94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND----------LHDYAKAIDCYELAG-EWYAQDQSVALSNKCFI  162 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH----------HHHHHHHHHHHHHHH-HHHHhcCchhhhhhHHH
Confidence            999999999999754322 223356677777776432          367999999999999 875432      45689


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH-----H
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE-----L  390 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-----~  390 (444)
                      ++|.++..+|++++|+..|++++.+.|..+.      ..+...|.++...|+++.|...++++++.+|  ....     .
T Consensus       163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~--~~~~sre~~~  240 (290)
T d1qqea_         163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP--NFADSRESNF  240 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHH
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CccchHHHHH
Confidence            9999999999999999999999999988631      3467788899999999999999999999998  4322     2


Q ss_pred             HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhh
Q 013375          391 LRTKAKVQLV--QGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       391 ~~~la~~~~~--~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      ...+..++..  .+++++|+..|.++..+.|....
T Consensus       241 l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~  275 (290)
T d1qqea_         241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT  275 (290)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHH
Confidence            2333333333  45689999999888777665444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.8e-15  Score=132.87  Aligned_cols=102  Identities=14%  Similarity=-0.049  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013375          317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK  396 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~  396 (444)
                      ++.+...|..+...|++++|+..|++|+.++|++ ..+|.++|.+|...|+|++|+..|++|++++|  ++..+|+++|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--~~~~a~~~lg~   80 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQ   80 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--CcHHHHHHHHH
Confidence            3444555555555555555555555555555555 35555555555555555555555555555555  55555555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375          397 VQLVQGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       397 ~~~~~g~~~~A~~~~~~al~l~~~~  421 (444)
                      ++..+|++++|+..|++++++.|+.
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccc
Confidence            5555555555555555555555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=122.42  Aligned_cols=103  Identities=14%  Similarity=0.026  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      .-+...|..+...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..++++++++|  +++.+|+++|.+
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~   80 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-hhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHH
Confidence            345678999999999999999999999999999 59999999999999999999999999999999  899999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375          398 QLVQGQLKGAVETYTHLLAALQVQTK  423 (444)
Q Consensus       398 ~~~~g~~~~A~~~~~~al~l~~~~~~  423 (444)
                      +..+|++++|+..|++++++.|++..
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNPQ  106 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999987655

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=1.5e-15  Score=127.03  Aligned_cols=105  Identities=13%  Similarity=0.060  Sum_probs=94.1

Q ss_pred             HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 013375          293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL  362 (444)
Q Consensus       293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~----------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l  362 (444)
                      ++.+++++|+..|++++ +++|+|+++++++|.++...          +++++|+..|++|++++|++ ..+|+++|.++
T Consensus         8 ~r~~~fe~A~~~~e~al-~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTY-KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHH-hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-hHHHhhHHHHH
Confidence            56788999999999999 99999999999999999854          55689999999999999999 59999999999


Q ss_pred             HHccC-----------HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013375          363 SAQKR-----------YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       363 ~~~g~-----------~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~  401 (444)
                      ..+|+           |++|+.+|++|++++|  ++..++..++.+....
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P--~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHTHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCC--CHHHHHHHHHHHHHHH
Confidence            98764           7999999999999999  8988888887775443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.5e-16  Score=136.18  Aligned_cols=100  Identities=17%  Similarity=0.128  Sum_probs=93.4

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +..+...|..+...           |++++|+..|++++ .++|+++.+|+++|.+|...|++++|+..|++|+.++|++
T Consensus         4 a~~l~~~Gn~~~~~-----------g~~~~Ai~~~~kal-~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1           4 AQELKEQGNRLFVG-----------RKYPEAAACYGRAI-TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc
Confidence            34566778887664           67999999999999 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          351 NLKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                       ..+|.++|.++..+|+|++|+..|++|++++|
T Consensus        72 -~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          72 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence             69999999999999999999999999999988

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.4e-14  Score=133.83  Aligned_cols=215  Identities=8%  Similarity=-0.068  Sum_probs=175.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHh--------------cCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCchHH
Q 013375          150 RKVALKRIEWDPSILDHLSFAFSI--------------AGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVA  214 (444)
Q Consensus       150 ~~~~l~~~p~~~~~~~~lg~~l~~--------------~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~g~~~~A  214 (444)
                      .+.++...|.++.+|...+.-+..              .+..++|...|+++++. .|.+...|+.++.++...|++++|
T Consensus        39 yerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a  118 (308)
T d2onda1          39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV  118 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHH
Confidence            355667779999999887765433              33468899999999974 899999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHH
Q 013375          215 LNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD  293 (444)
Q Consensus       215 ~~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~  293 (444)
                      ..+|++++  ...|.+.. ++...+... ...+..++|...|+++++..|...     ..+...+......         
T Consensus       119 ~~i~~~~l--~~~~~~~~~~w~~~~~~~-~~~~~~~~ar~i~~~al~~~~~~~-----~~~~~~a~~e~~~---------  181 (308)
T d2onda1         119 HSIYNRLL--AIEDIDPTLVYIQYMKFA-RRAEGIKSGRMIFKKAREDARTRH-----HVYVTAALMEYYC---------  181 (308)
T ss_dssp             HHHHHHHH--TSSSSCTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHTSTTCCT-----HHHHHHHHHHHHT---------
T ss_pred             HHHHHHHH--HHhcCChHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHh---------
Confidence            99999999  88998754 555555554 346788999999999999655432     3444444332111         


Q ss_pred             HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHH
Q 013375          294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYED  370 (444)
Q Consensus       294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~e  370 (444)
                       .++.+.|...|++++ ...|+++..|...+..+...|+++.|...|++++...|.++   ...|..........|+.+.
T Consensus       182 -~~~~~~a~~i~e~~l-~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~  259 (308)
T d2onda1         182 -SKDKSVAFKIFELGL-KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  259 (308)
T ss_dssp             -SCCHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred             -ccCHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHH
Confidence             256789999999999 99999999999999999999999999999999999776432   3578888888888999999


Q ss_pred             HHHHHHHHHhhcC
Q 013375          371 AETILNAALDQTG  383 (444)
Q Consensus       371 A~~~~~~al~~~P  383 (444)
                      +..+++++.+..|
T Consensus       260 ~~~~~~r~~~~~~  272 (308)
T d2onda1         260 ILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCc
Confidence            9999999999999

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.60  E-value=2.9e-13  Score=124.09  Aligned_cols=232  Identities=14%  Similarity=0.060  Sum_probs=185.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----CCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375          160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLPALL  235 (444)
Q Consensus       160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----~g~~~~A~~~~~~al~~~~~P~~~~a~~  235 (444)
                      ||.+++.||..+...|++++|+++|+++.+.  ++++++++||.+|..    ..++..|...++.+.    .++++.+..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~----~~~~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC----DLNYSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----HTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc----cccccchhh
Confidence            6889999999999999999999999999764  789999999999998    678999999999998    556777777


Q ss_pred             HHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375          236 IASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST  312 (444)
Q Consensus       236 ~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~  312 (444)
                      .++.+...   ..+..+.|..+++++.+. .+      ..+...+|..+.....       .......|+..+.+..   
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-g~------~~a~~~l~~~~~~~~~-------~~~~~~~a~~~~~~~~---  137 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KY------AEGCASLGGIYHDGKV-------VTRDFKKAVEYFTKAC---  137 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHHHCSS-------SCCCHHHHHHHHHHHH---
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhh-hh------hhHHHhhcccccCCCc-------ccchhHHHHHHhhhhh---
Confidence            66665432   356788999999999883 22      3455666665543111       0124567777777766   


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcCC
Q 013375          313 NMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGK  384 (444)
Q Consensus       313 ~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~~P~  384 (444)
                      ++.++.++++||.++..    ..+...+...++++.+  +.+ ..+++++|.++..    .+++++|+.+|+++.+.   
T Consensus       138 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~-~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~---  211 (265)
T d1ouva_         138 DLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKD-SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---  211 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTC-HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---
T ss_pred             cccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccc-cccccchhhhcccCcccccchhhhhhhHhhhhcc---
Confidence            47888999999999997    5688889999998865  566 4999999999987    67899999999999877   


Q ss_pred             CCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhh
Q 013375          385 WEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQ  421 (444)
Q Consensus       385 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~~~~  421 (444)
                       .++.+++++|.++..    ..++++|+.+|+++.+.-...
T Consensus       212 -g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         212 -ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             -TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             -cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence             457899999999975    447999999999998775443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.8e-15  Score=123.87  Aligned_cols=103  Identities=11%  Similarity=0.076  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375          319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ  398 (444)
Q Consensus       319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~  398 (444)
                      .+...|..+.+.|++++|+..|+++++++|++ ..+|.++|.++...|++++|+..|+++++++|  ++..+|+.+|.++
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~   88 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhh-hhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHH
Confidence            35567889999999999999999999999999 59999999999999999999999999999999  9999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          399 LVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       399 ~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      ..+|++++|+..|++++.+.|++...
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~  114 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDA  114 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999999999999876653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.58  E-value=8.4e-15  Score=116.77  Aligned_cols=95  Identities=13%  Similarity=0.018  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      ..++++|.++.+.|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+++++++++|  ++..+|+.+|.+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~   93 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVS   93 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhccccccc-chhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHH
Confidence            346788999999999999999999999999998 59999999999999999999999999999999  899999999999


Q ss_pred             HHHhCCHHHHHHHHHHHH
Q 013375          398 QLVQGQLKGAVETYTHLL  415 (444)
Q Consensus       398 ~~~~g~~~~A~~~~~~al  415 (444)
                      +..+|++++|++.+++.|
T Consensus        94 y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHh
Confidence            999999999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.8e-14  Score=121.02  Aligned_cols=135  Identities=14%  Similarity=0.025  Sum_probs=115.2

Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHH
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---------------SILYRLSLEYAEQRKLNAAH  337 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~  337 (444)
                      .+...|..++.           .+++++|+..|++++ ...|.+.               .++.++|.+|.++|++++|+
T Consensus        15 ~l~~~G~~~~~-----------~~~~~~Ai~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~   82 (170)
T d1p5qa1          15 IVKERGTVYFK-----------EGKYKQALLQYKKIV-SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI   82 (170)
T ss_dssp             HHHHHHHHHHH-----------HTCHHHHHHHHHHHH-HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHH-----------cCCHHHHHHHHHHHH-HHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccccc
Confidence            34456666654           467999999999999 9988653               46778999999999999999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH-HHHHHHHH
Q 013375          338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV-ETYTHLLA  416 (444)
Q Consensus       338 ~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~  416 (444)
                      ..++++++++|++ +.+|..+|.++..+|+|++|+..|+++++++|  ++..+...++.+....++..+.. ..|++.++
T Consensus        83 ~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P--~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  159 (170)
T d1p5qa1          83 ESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  159 (170)
T ss_dssp             HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccccc-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 59999999999999999999999999999999  89999999999988877776554 34777766


Q ss_pred             HHHhhh
Q 013375          417 ALQVQT  422 (444)
Q Consensus       417 l~~~~~  422 (444)
                      ...+.+
T Consensus       160 ~~~~~~  165 (170)
T d1p5qa1         160 RLAEEE  165 (170)
T ss_dssp             HHHHHH
T ss_pred             HHhcch
Confidence            655443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=1.6e-14  Score=115.12  Aligned_cols=94  Identities=18%  Similarity=0.047  Sum_probs=87.9

Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL  352 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  352 (444)
                      .++.+|.++...           |++++|+..|++++ .++|+++.+|+.+|.++...|++++|+..|+++++++|++ .
T Consensus        18 ~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~   84 (112)
T d1hxia_          18 NPMEEGLSMLKL-----------ANLAEAALAFEAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-I   84 (112)
T ss_dssp             CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred             HHHHHHHHHHHH-----------hhhHHHHHHHhhhc-ccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-c
Confidence            456778877654           67999999999999 9999999999999999999999999999999999999999 5


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAAL  379 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~al  379 (444)
                      .+|..+|.++..+|++++|++++++.|
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.4e-14  Score=117.19  Aligned_cols=104  Identities=12%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHccCHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQKRYED  370 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~-~~~~~~la~~l~~~g~~~e  370 (444)
                      .+++++|.+.|++++ .++|+++++++++|+++.+.+   ++++|+..|++++..+|.+. ..+|+++|.++..+|+|++
T Consensus        12 ~~~l~~Ae~~Y~~aL-~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~   90 (122)
T d1nzna_          12 VEDLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   90 (122)
T ss_dssp             HHHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence            467999999999999 999999999999999998755   45579999999999987642 2589999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013375          371 AETILNAALDQTGKWEQGELLRTKAKVQLVQ  401 (444)
Q Consensus       371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~  401 (444)
                      |+.+|+++++++|  ++..+...++.+..+.
T Consensus        91 A~~~~~~aL~~~P--~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          91 ALKYVRGLLQTEP--QNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCc--CCHHHHHHHHHHHHHH
Confidence            9999999999999  9999999998887654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.9e-13  Score=111.47  Aligned_cols=101  Identities=14%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS  350 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  350 (444)
                      +..+-.+|..+...           +++++|+.+|++++ +++|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus         4 a~~~k~~G~~~~~~-----------~~y~~Ai~~y~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAYKK-----------KDFDTALKHYDKAK-ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            34556788887654           67999999999999 9999999999999999999999999999999999999987


Q ss_pred             C------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          351 N------LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       351 ~------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      +      +.++..+|.++..++++++|+.+|++++..+|
T Consensus        72 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            4      13566677888888999999999999999888

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=9.5e-14  Score=118.92  Aligned_cols=97  Identities=16%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC
Q 013375          307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE  386 (444)
Q Consensus       307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~  386 (444)
                      +.. .++|.+..++.++|.++.++|++++|+..|+++++++|++ ..+|+.+|.++..+|++++|+..|+++++++|  +
T Consensus        68 ~~~-~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p--~  143 (169)
T d1ihga1          68 DGA-KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAP--E  143 (169)
T ss_dssp             HHG-GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred             HHH-HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC--C
Confidence            344 6778888889999999999999999999999999999998 59999999999999999999999999999999  8


Q ss_pred             cHHHHHHHHHHHHHhCCHHHH
Q 013375          387 QGELLRTKAKVQLVQGQLKGA  407 (444)
Q Consensus       387 ~~~~~~~la~~~~~~g~~~~A  407 (444)
                      +..++..++.+.....+..++
T Consensus       144 n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         144 DKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887666555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-13  Score=118.12  Aligned_cols=138  Identities=13%  Similarity=0.009  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375          195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN  274 (444)
Q Consensus       195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~  274 (444)
                      +..+...|..++..|+|++|+..|+++|  ...|......           +.  +  ......          ....++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al--~~~~~~~~~~-----------~~--~--~~~~~~----------~~~~~~   65 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIV--SWLEYESSFS-----------NE--E--AQKAQA----------LRLASH   65 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHTTTCCCCC-----------SH--H--HHHHHH----------HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHhhhccccc-----------hH--H--Hhhhch----------hHHHHH
Confidence            4456678889999999999999999998  6666543211           00  0  000001          123467


Q ss_pred             HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375          275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG  354 (444)
Q Consensus       275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  354 (444)
                      .++|.||..+           |++++|+..+++++ .++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+
T Consensus        66 ~nla~~y~k~-----------~~~~~A~~~~~~al-~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~-~~  132 (170)
T d1p5qa1          66 LNLAMCHLKL-----------QAFSAAIESCNKAL-ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK-AA  132 (170)
T ss_dssp             HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-HH
T ss_pred             HHHHHHHHhh-----------hhcccccchhhhhh-hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH-HH
Confidence            7899998765           67999999999999 99999999999999999999999999999999999999994 99


Q ss_pred             HHHHHHHHHHccCHHHHH
Q 013375          355 WLLMARILSAQKRYEDAE  372 (444)
Q Consensus       355 ~~~la~~l~~~g~~~eA~  372 (444)
                      ...++.+....+++.+..
T Consensus       133 ~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         133 KTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988777766554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.48  E-value=5.1e-13  Score=114.21  Aligned_cols=133  Identities=14%  Similarity=0.077  Sum_probs=112.3

Q ss_pred             HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHH
Q 013375          274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---------------SILYRLSLEYAEQRKLNAAHY  338 (444)
Q Consensus       274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~  338 (444)
                      +...|..++.           .|++.+|+..|++++ ..-|...               .++.++|.+|..+|++++|+.
T Consensus        18 ~~e~G~~~~~-----------~~~~~~A~~~Y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~   85 (168)
T d1kt1a1          18 VKEKGTVYFK-----------GGKYVQAVIQYGKIV-SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE   85 (168)
T ss_dssp             HHHHHHHHHH-----------TTCHHHHHHHHHHHH-HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHH-----------cCCHHHHHHHHHHHH-HHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchh
Confidence            4445666654           467999999999999 7655432               456789999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHH
Q 013375          339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK-GAVETYTHLLAA  417 (444)
Q Consensus       339 ~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~l  417 (444)
                      .+++++.++|++ ..+|+.+|.++..+|+|++|+..|++++.++|  ++..++..++.+....++.. .....|.+.++-
T Consensus        86 ~~~~al~l~p~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P--~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1          86 CCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKAARLQIFMCQKKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            999999999999 69999999999999999999999999999999  89999999999987777665 466777777766


Q ss_pred             HHhh
Q 013375          418 LQVQ  421 (444)
Q Consensus       418 ~~~~  421 (444)
                      .+++
T Consensus       163 ~~~~  166 (168)
T d1kt1a1         163 FAEQ  166 (168)
T ss_dssp             HHTT
T ss_pred             hhhc
Confidence            6554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=2.9e-13  Score=113.92  Aligned_cols=104  Identities=13%  Similarity=0.024  Sum_probs=93.4

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDL----------------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM  358 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l  358 (444)
                      .|++.+|+..|++++ ..-|...                .++.|+|.+|.++|++++|+..|+++++++|++ ..+|+.+
T Consensus        30 ~~~y~~A~~~Y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~-~ka~~~~  107 (153)
T d2fbna1          30 KNEINEAIVKYKEAL-DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKL  107 (153)
T ss_dssp             TTCHHHHHHHHHHHH-HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-hhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh-hhhhHHh
Confidence            467999999999999 8776443                367899999999999999999999999999999 6999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375          359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG  402 (444)
Q Consensus       359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g  402 (444)
                      |.++..+|++++|+..|+++++++|  ++..+...++.+..+++
T Consensus       108 g~~~~~lg~~~~A~~~~~~al~l~P--~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         108 GVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999  89999988888766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=4.9e-13  Score=112.50  Aligned_cols=133  Identities=12%  Similarity=-0.001  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013375          196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC  275 (444)
Q Consensus       196 ~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~  275 (444)
                      ..+...|..++..|+|++|+..|++++  ..-|....              ..+.......+.+.          ...+.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al--~~~~~~~~--------------~~~~~~~~~~~~~~----------~~~~~   71 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEE--------------WDDQILLDKKKNIE----------ISCNL   71 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTT--------------CCCHHHHHHHHHHH----------HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCcchhh--------------hhhHHHHHhhhhHH----------HHHHh
Confidence            345667888999999999999999999  55554221              11111111222222          35678


Q ss_pred             HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH
Q 013375          276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW  355 (444)
Q Consensus       276 ~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  355 (444)
                      ++|.+|..+           +++++|+..+++++ +++|++..+|+++|.++..+|++++|+..|+++++++|++ ..++
T Consensus        72 Nla~~~~~l-----------~~~~~Al~~~~~al-~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~  138 (153)
T d2fbna1          72 NLATCYNKN-----------KDYPKAIDHASKVL-KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIR  138 (153)
T ss_dssp             HHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHH
T ss_pred             hHHHHHHHh-----------cccchhhhhhhccc-cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Confidence            899998765           67999999999999 9999999999999999999999999999999999999999 5999


Q ss_pred             HHHHHHHHHccC
Q 013375          356 LLMARILSAQKR  367 (444)
Q Consensus       356 ~~la~~l~~~g~  367 (444)
                      ..++.+..+.++
T Consensus       139 ~~l~~~~~kl~~  150 (153)
T d2fbna1         139 NSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998887665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=8.4e-14  Score=116.22  Aligned_cols=132  Identities=10%  Similarity=-0.026  Sum_probs=85.4

Q ss_pred             HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013375          171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE  250 (444)
Q Consensus       171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e  250 (444)
                      +.+.+.+++|+..|+++++++|+++++++++|.++...+++..+...                           .+.+++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~---------------------------~~~~~~   59 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA---------------------------KQMIQE   59 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH---------------------------HHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH---------------------------HHHHHH
Confidence            45667789999999999999999999999999988876554332211                           012234


Q ss_pred             HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013375          251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ  330 (444)
Q Consensus       251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~  330 (444)
                      |+..|++++++.|.+     ..+|+++|.+|..+|+.........+.+++|++.|++++ +++|++..++..|+.+....
T Consensus        60 Ai~~~~kAl~l~P~~-----~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal-~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          60 AITKFEEALLIDPKK-----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV-DEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHhcchh-----hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc-ccCCCHHHHHHHHHHHHHHH
Confidence            455555555533222     344555555555544332222233456889999999999 99999999998888885444


Q ss_pred             CCHHH
Q 013375          331 RKLNA  335 (444)
Q Consensus       331 g~~~~  335 (444)
                      +.+.+
T Consensus       134 ~~~~e  138 (145)
T d1zu2a1         134 QLHAE  138 (145)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-13  Score=110.77  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-------HHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-------GEL  390 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~-------~~~  390 (444)
                      ..+-++|..+...|++++|+.+|+++++++|++ ..+|.++|.++..+|+|++|+..++++++++|  ++       ..+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~--~~~~~~~~~a~~   81 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--ENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence            456789999999999999999999999999999 59999999999999999999999999999998  44       346


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375          391 LRTKAKVQLVQGQLKGAVETYTHLLAALQV  420 (444)
Q Consensus       391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~  420 (444)
                      +..+|.++..++++++|+..|++++...+.
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            778889999999999999999999987654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=3e-12  Score=109.33  Aligned_cols=148  Identities=11%  Similarity=0.024  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375          195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN  274 (444)
Q Consensus       195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~  274 (444)
                      ++.+...|..++..|+|++|+..|++|+  ...|.....             ..+.. ...           .......+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al--~~~~~~~~~-------------~~~~~-~~~-----------~~~~~~~~   67 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIV--SWLEMEYGL-------------SEKES-KAS-----------ESFLLAAF   67 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHTTCCSC-------------CHHHH-HHH-----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhhcc-------------chhhh-hhc-----------chhHHHHH
Confidence            4556778999999999999999999999  544432210             00000 000           01224567


Q ss_pred             HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375          275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG  354 (444)
Q Consensus       275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  354 (444)
                      .++|.||..+           +++++|+..+++++ .++|+++.+++++|.++..+|++++|+..|++++.++|++ ..+
T Consensus        68 ~Nla~~~~~l-----------~~~~~Ai~~~~~al-~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~  134 (168)
T d1kt1a1          68 LNLAMCYLKL-----------REYTKAVECCDKAL-GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAA  134 (168)
T ss_dssp             HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHH
T ss_pred             HhHHHHHHHh-----------hhcccchhhhhhhh-hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH
Confidence            8899998765           67999999999999 9999999999999999999999999999999999999999 499


Q ss_pred             HHHHHHHHHHccCHHH-HHHHHHHHHhhc
Q 013375          355 WLLMARILSAQKRYED-AETILNAALDQT  382 (444)
Q Consensus       355 ~~~la~~l~~~g~~~e-A~~~~~~al~~~  382 (444)
                      +..++.+....+.+.+ ....|.+..+..
T Consensus       135 ~~~l~~~~~~~~~~~e~~kk~~~~~f~~~  163 (168)
T d1kt1a1         135 RLQIFMCQKKAKEHNERDRRTYANMFKKF  163 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence            9999999888776654 445555555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.1e-14  Score=113.34  Aligned_cols=106  Identities=13%  Similarity=-0.046  Sum_probs=92.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375          321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYEDAETILNAALDQTGKWEQGELLRTKAKV  397 (444)
Q Consensus       321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~---g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~  397 (444)
                      -+++..+...+++++|++.|++++.++|++ ..+++++|+++...   +++++|+..+++++..+|+++...+|+++|.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            356778888999999999999999999999 59999999999864   45667999999999988722335689999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 013375          398 QLVQGQLKGAVETYTHLLAALQVQTKTFSS  427 (444)
Q Consensus       398 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~  427 (444)
                      +..+|++++|+.+|++++++.|++......
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l  111 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKEL  111 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence            999999999999999999999988775443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.42  E-value=5e-11  Score=108.76  Aligned_cols=235  Identities=10%  Similarity=0.008  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013375           64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL  143 (444)
Q Consensus        64 ~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~  143 (444)
                      +++..+|..+.+.|++++|+.+|+++.+..   ++.    ....++.++..+...                ..++..|+.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~----A~~~Lg~~y~~G~~~----------------~~d~~~a~~   59 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENS----GCFNLGVLYYQGQGV----------------EKNLKKAAS   59 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSS----------------CCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCc----------------chhHHHHHH
Confidence            467777888888889999999988887661   221    133445444332110                123444444


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375          144 LLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR  219 (444)
Q Consensus       144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~  219 (444)
                      .+..       ...+.++.+...+|.++..    .++.+.|...|+++...  +...+...+|..+....          
T Consensus        60 ~~~~-------a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~l~~~~~~~~----------  120 (265)
T d1ouva_          60 FYAK-------ACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGK----------  120 (265)
T ss_dssp             HHHH-------HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS----------
T ss_pred             hhcc-------cccccccchhhccccccccccccchhhHHHHHHHhhhhhh--hhhhHHHhhcccccCCC----------
Confidence            3311       1113444555555544432    23344444444444432  22333333333333211          


Q ss_pred             HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH
Q 013375          220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA  299 (444)
Q Consensus       220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  299 (444)
                                             ........+...+.+.....       ...+++.||..+......       .....
T Consensus       121 -----------------------~~~~~~~~a~~~~~~~~~~~-------~~~~~~~L~~~~~~~~~~-------~~~~~  163 (265)
T d1ouva_         121 -----------------------VVTRDFKKAVEYFTKACDLN-------DGDGCTILGSLYDAGRGT-------PKDLK  163 (265)
T ss_dssp             -----------------------SSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSS-------CCCHH
T ss_pred             -----------------------cccchhHHHHHHhhhhhccc-------ccchhhhhhhhhccCCCc-------ccccc
Confidence                                   12233444555555544421       134566666666542110       12456


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHH
Q 013375          300 KALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDA  371 (444)
Q Consensus       300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA  371 (444)
                      .+...++.+.   ++.++.++++||.++..    .+++++|+.+|+++.+..  + ..++++||.++..    .+++++|
T Consensus       164 ~~~~~~~~a~---~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~-~~a~~~LG~~y~~G~g~~~n~~~A  237 (265)
T d1ouva_         164 KALASYDKAC---DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQA  237 (265)
T ss_dssp             HHHHHHHHHH---HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             cchhhhhccc---cccccccccchhhhcccCcccccchhhhhhhHhhhhccc--C-HHHHHHHHHHHHcCCCCccCHHHH
Confidence            6777777777   36788999999988887    678999999999998764  5 4888899998875    3478899


Q ss_pred             HHHHHHHHhhcC
Q 013375          372 ETILNAALDQTG  383 (444)
Q Consensus       372 ~~~~~~al~~~P  383 (444)
                      +.+|++|.+..+
T Consensus       238 ~~~~~kAa~~g~  249 (265)
T d1ouva_         238 IENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHCcC
Confidence            999999988765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.40  E-value=7.3e-13  Score=111.75  Aligned_cols=115  Identities=10%  Similarity=0.064  Sum_probs=96.4

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhcCCCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          317 LSILYRL--SLEYAEQRKLNAAHYYAKMLLKLEGGSN-----------LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       317 ~~a~~~l--g~~~~~~g~~~~A~~~~~~al~l~P~~~-----------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      ..++..+  |..+...|++++|+..|+++++++|+.+           +.+|.++|.++..+|++++|+..+++++.+.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3455555  7788899999999999999999998753           25789999999999999999999999998754


Q ss_pred             CC---------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013375          384 KW---------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF  431 (444)
Q Consensus       384 ~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  431 (444)
                      +.         ....+++++|.++..+|++++|+..|++++++.|+..+..+.....
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~  143 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  143 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHH
Confidence            10         1244789999999999999999999999999999888776655443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=1.7e-12  Score=110.87  Aligned_cols=100  Identities=12%  Similarity=0.021  Sum_probs=84.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH----------------hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013375          322 RLSLEYAEQRKLNAAHYYAKMLL----------------KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW  385 (444)
Q Consensus       322 ~lg~~~~~~g~~~~A~~~~~~al----------------~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~  385 (444)
                      ..|..+...|++++|+..|++++                .++|.. ..+|.++|.++..+|+|++|+..|++||+++|  
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p--  108 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--  108 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhh-HHHHHHHHHHHHhhcccchhhhhhhhhhhhhh--
Confidence            44555555566666666665555                456776 58899999999999999999999999999999  


Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375          386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT  424 (444)
Q Consensus       386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~  424 (444)
                      +++.+|+++|.++..+|++++|+..|++++++.|++...
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~  147 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI  147 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999999999999999999987653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-11  Score=94.33  Aligned_cols=85  Identities=7%  Similarity=0.008  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375          316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE  389 (444)
Q Consensus       316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~  389 (444)
                      +++-.+.+|.++.++|++++|+..|++|+++.|+++      ..++.++|.++..+|++++|+.+|+++|+++|  ++..
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P--~~~~   81 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP--EHQR   81 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc--CCHH
Confidence            356789999999999999999999999999987642      36899999999999999999999999999999  8999


Q ss_pred             HHHHHHHHHHHhC
Q 013375          390 LLRTKAKVQLVQG  402 (444)
Q Consensus       390 ~~~~la~~~~~~g  402 (444)
                      ++.+++.+...++
T Consensus        82 a~~Nl~~~~~~l~   94 (95)
T d1tjca_          82 ANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999988765543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.22  E-value=2.2e-11  Score=102.43  Aligned_cols=103  Identities=15%  Similarity=-0.039  Sum_probs=85.7

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL------------SILYRLSLEYAEQRKLNAAHY  338 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~------------~a~~~lg~~~~~~g~~~~A~~  338 (444)
                      +.++..+|.+...         .+.|++++|+..|++++ +++|+.+            .+|.++|.+|..+|++++|+.
T Consensus         7 a~a~~~l~~g~~~---------~~~g~y~~Ai~~y~~Al-~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~   76 (156)
T d2hr2a1           7 VGAYLALSDAQRQ---------LVAGEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH   76 (156)
T ss_dssp             HHHHHHHHHHHHH---------HHHTCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHH-HhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhH
Confidence            4566666554332         23578999999999999 9998764            578899999999999999999


Q ss_pred             HHHHHHhhcCCCC----------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375          339 YAKMLLKLEGGSN----------LKGWLLMARILSAQKRYEDAETILNAALDQTG  383 (444)
Q Consensus       339 ~~~~al~l~P~~~----------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P  383 (444)
                      .+++++++.|+..          ..+++++|.++..+|++++|+..|++|+++.|
T Consensus        77 ~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          77 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999866310          24688999999999999999999999999876

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.21  E-value=5.8e-12  Score=115.47  Aligned_cols=127  Identities=14%  Similarity=0.026  Sum_probs=113.8

Q ss_pred             HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375          295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI  374 (444)
Q Consensus       295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~  374 (444)
                      .|++++|+..|++++ +.+|+|+.++.+||.+|...|++++|+..|+++++++|++ ..++..++.++...++.+++...
T Consensus         9 ~G~l~eAl~~l~~al-~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           9 EGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhccccHHHHHH
Confidence            578999999999999 9999999999999999999999999999999999999999 59999999999988888887776


Q ss_pred             HHHHHhh-cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          375 LNAALDQ-TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       375 ~~~al~~-~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      +.+.... .|  +....+...+.+....|+.++|.+.++++.++.|......
T Consensus        87 ~~~~~~~~~p--~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          87 AATAKVLGEN--EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             CCCEECCCSC--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             hhhhhcccCc--hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            6554433 45  6778888899999999999999999999999999876643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.4e-11  Score=90.69  Aligned_cols=81  Identities=17%  Similarity=0.055  Sum_probs=70.5

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD-------LSILYRLSLEYAEQRKLNAAHYYAKML  343 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~a  343 (444)
                      +.-.+.+|.++..+           |++++|+..|++|+ ++.|.+       ++++++||.++.+.|++++|+..|+++
T Consensus         5 addc~~lG~~~~~~-----------g~y~~A~~~~~~Al-~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_           5 AEDSFELGKVAYTE-----------ADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            45578899888765           67999999999999 887655       678999999999999999999999999


Q ss_pred             HhhcCCCChHHHHHHHHHHHH
Q 013375          344 LKLEGGSNLKGWLLMARILSA  364 (444)
Q Consensus       344 l~l~P~~~~~~~~~la~~l~~  364 (444)
                      ++++|++ ..++.+++.+...
T Consensus        73 L~l~P~~-~~a~~Nl~~~~~~   92 (95)
T d1tjca_          73 LELDPEH-QRANGNLKYFEYI   92 (95)
T ss_dssp             HHHCTTC-HHHHHHHHHHHHH
T ss_pred             HHhCcCC-HHHHHHHHHHHHH
Confidence            9999999 4999998776543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=1.9e-09  Score=92.43  Aligned_cols=106  Identities=12%  Similarity=-0.020  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------------------hHHHHHHHHHHHHccCHHHHHHHHH
Q 013375          318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---------------------LKGWLLMARILSAQKRYEDAETILN  376 (444)
Q Consensus       318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---------------------~~~~~~la~~l~~~g~~~eA~~~~~  376 (444)
                      +++.+.|..+...|++++|+..|.+|+++.|+..                     ..++..++.++..+|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4455555555556666666666666666554321                     3678899999999999999999999


Q ss_pred             HHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375          377 AALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF  425 (444)
Q Consensus       377 ~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  425 (444)
                      ++++.+|  .+..+|.+++.++..+|++.+|+..|+++.+...+.-+..
T Consensus        92 ~al~~~P--~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          92 ALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999  8999999999999999999999999999988777654443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=4.8e-09  Score=89.82  Aligned_cols=119  Identities=13%  Similarity=-0.112  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhH
Q 013375          193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST  272 (444)
Q Consensus       193 ~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~  272 (444)
                      +..+.+.+.|..+...|++++|+..|.+|+  .+.|+.+...+       ......                        
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL--~l~rG~~l~~~-------~~~~w~------------------------   55 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAAL--REWRGPVLDDL-------RDFQFV------------------------   55 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCCSSTTGGG-------TTSTTH------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hhCcccccccC-------cchHHH------------------------
Confidence            346778889999999999999999999999  88887643211       000000                        


Q ss_pred             HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375          273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL  352 (444)
Q Consensus       273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  352 (444)
                                                      ..... .+.+....++.++|.++...|++++|+..++++++++|.+ .
T Consensus        56 --------------------------------~~~r~-~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~-e  101 (179)
T d2ff4a2          56 --------------------------------EPFAT-ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR-E  101 (179)
T ss_dssp             --------------------------------HHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-H
T ss_pred             --------------------------------HHHHH-HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc-H
Confidence                                            00111 2223334566677777777777777777777777777776 4


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375          353 KGWLLMARILSAQKRYEDAETILNAA  378 (444)
Q Consensus       353 ~~~~~la~~l~~~g~~~eA~~~~~~a  378 (444)
                      .+|..++.++...|++.+|+..|+++
T Consensus       102 ~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2         102 PLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            77777777777777777777777766

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.92  E-value=4.7e-10  Score=102.48  Aligned_cols=128  Identities=12%  Similarity=-0.029  Sum_probs=96.2

Q ss_pred             HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013375          171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE  250 (444)
Q Consensus       171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e  250 (444)
                      ....|++++|++.|+++++.+|++++++..||.+|...|++++|+..|++++  +++|++..++..++.+...       
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~--~l~P~~~~~~~~l~~ll~a-------   76 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI--KLFPEYLPGASQLRHLVKA-------   76 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCGGGHHHHHHHHHHHHH-------
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHh-------
Confidence            4567999999999999999999999999999999999999999999999999  8999888776554433211       


Q ss_pred             HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013375          251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ  330 (444)
Q Consensus       251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~  330 (444)
                       .                                           +..+++...+.+.....+|++...+...+.++...
T Consensus        77 -~-------------------------------------------~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~  112 (264)
T d1zbpa1          77 -A-------------------------------------------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS  112 (264)
T ss_dssp             -H-------------------------------------------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHH
T ss_pred             -c-------------------------------------------cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhC
Confidence             0                                           11122222222211034566667777888888888


Q ss_pred             CCHHHHHHHHHHHHhhcCCCC
Q 013375          331 RKLNAAHYYAKMLLKLEGGSN  351 (444)
Q Consensus       331 g~~~~A~~~~~~al~l~P~~~  351 (444)
                      |++++|...++++.++.|+.+
T Consensus       113 gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1         113 QDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCC
T ss_pred             CCHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999988864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=4.8e-07  Score=70.99  Aligned_cols=82  Identities=6%  Similarity=-0.004  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375          317 LSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT  393 (444)
Q Consensus       317 ~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~  393 (444)
                      +++.|+.|+++....   +.++|+..++.+++.+|.+..++|++||..+.++|+|++|+.+++++|+.+|  +|..+...
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP--~n~qA~~L  112 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNKQVGAL  112 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC--CcHHHHHH
Confidence            789999999999775   4568999999999999976448999999999999999999999999999999  89888877


Q ss_pred             HHHHHHH
Q 013375          394 KAKVQLV  400 (444)
Q Consensus       394 la~~~~~  400 (444)
                      +-.+..+
T Consensus       113 ~~~Ie~~  119 (124)
T d2pqrb1         113 KSMVEDK  119 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=5.7e-07  Score=70.53  Aligned_cols=82  Identities=12%  Similarity=0.092  Sum_probs=67.5

Q ss_pred             hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375          271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG  349 (444)
Q Consensus       271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  349 (444)
                      ....|..|.++..-.        ...+..+|+.++++++ +.+|.+. +.+|+||..|+++|++++|+.+++++|+++|+
T Consensus        35 ~qt~F~YAw~Lv~S~--------~~~d~~~gI~lLe~~~-~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          35 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHHSS--------CHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHcCC--------cHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            456677777665321        1246789999999999 9999875 89999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHH
Q 013375          350 SNLKGWLLMARIL  362 (444)
Q Consensus       350 ~~~~~~~~la~~l  362 (444)
                      + ..+....-.|.
T Consensus       106 n-~qA~~L~~~Ie  117 (124)
T d2pqrb1         106 N-KQVGALKSMVE  117 (124)
T ss_dssp             C-HHHHHHHHHHH
T ss_pred             c-HHHHHHHHHHH
Confidence            9 48877766554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.37  E-value=4.3e-06  Score=67.04  Aligned_cols=110  Identities=17%  Similarity=0.067  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375          247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE  326 (444)
Q Consensus       247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~  326 (444)
                      ++++|+.+|+++.+.-  +     ..+.+.||....             .+.++|+..|+++. +  .+++.+.+.||.+
T Consensus         8 d~~~A~~~~~kaa~~g--~-----~~a~~~l~~~~~-------------~~~~~a~~~~~~aa-~--~g~~~a~~~Lg~~   64 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--E-----MFGCLSLVSNSQ-------------INKQKLFQYLSKAC-E--LNSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--C-----TTHHHHHHTCTT-------------SCHHHHHHHHHHHH-H--TTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--C-----hhhhhhhccccc-------------cCHHHHHHHHhhhh-c--ccchhhhhhHHHh
Confidence            5667888888887732  1     245566654332             34678888888877 4  4678888888888


Q ss_pred             HHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhc
Q 013375          327 YAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQT  382 (444)
Q Consensus       327 ~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~~  382 (444)
                      |..    ..++++|+++|+++.+.  .+ ..+.+.||.++..    ..++++|+.+|++|.+..
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~--g~-~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhccccchhhHHHHHHHhhhhcc--Cc-chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            775    45778888888888764  34 3777788887766    357888888888887764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.34  E-value=3.9e-06  Score=67.31  Aligned_cols=110  Identities=18%  Similarity=0.105  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDA  371 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA  371 (444)
                      .++++|+..|+++. +.+  ++.+.++||..  ...+.++|+..|+++.+.  ++ ..+.+.||.++..    ..++++|
T Consensus         7 kd~~~A~~~~~kaa-~~g--~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~--g~-~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKAC-ELN--EMFGCLSLVSN--SQINKQKLFQYLSKACEL--NS-GNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHH-HTT--CTTHHHHHHTC--TTSCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHH-HCC--Chhhhhhhccc--cccCHHHHHHHHhhhhcc--cc-hhhhhhHHHhhhhccccchhhHHH
Confidence            46899999999999 774  77788888753  457899999999999764  56 4999999999876    4679999


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAA  417 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l  417 (444)
                      +.+|+++.+.    .++.+.+++|.++..    ..++++|+..|+++.+.
T Consensus        79 ~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          79 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            9999999875    467889999999877    56899999999999764

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=1.7  Score=40.32  Aligned_cols=54  Identities=9%  Similarity=-0.105  Sum_probs=42.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375          357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL  414 (444)
Q Consensus       357 ~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  414 (444)
                      ..+..+...|+..+|...+..++...+    ..-...+|.+..+.|.++.|+....++
T Consensus       386 ~ra~~L~~~g~~~~A~~e~~~l~~~~~----~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         386 ARVRELMYWNLDNTARSEWANLVKSKS----KTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            346678889999999999988875433    344667889999999999999877665

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=2.8  Score=38.79  Aligned_cols=116  Identities=14%  Similarity=-0.009  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375          296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYA----EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA  371 (444)
Q Consensus       296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~----~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA  371 (444)
                      .+.+.|...+.... ...+-++..+........    ..+..+.|...+.....-..+. ....-.++.. ...+++..+
T Consensus       228 ~d~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~w~~~~a-l~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMA-LGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHH-HHHTCHHHH
T ss_pred             cChhHHHHHHHhhh-hcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch-HHHHHHHHHH-HHcCChHHH
Confidence            45678888888888 777777666655444443    3467788888887776555443 2333344443 456899988


Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375          372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA  416 (444)
Q Consensus       372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  416 (444)
                      ...+...-. .|. ......|=+|..+...|+.++|...|..+..
T Consensus       305 ~~~~~~l~~-~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         305 NTWLARLPM-EAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHSCT-TGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCc-ccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            888865432 231 3467778899999999999999999999864

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.02  E-value=11  Score=33.30  Aligned_cols=95  Identities=12%  Similarity=0.028  Sum_probs=61.6

Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375          130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG  209 (444)
Q Consensus       130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g  209 (444)
                      ..++..+++++|...+        .+  -++++.|..+..++....+..-|..+ ...+..   +++-...+-..+...|
T Consensus        48 ~~~v~l~~~~~avd~~--------~k--~~~~~~~k~~~~~l~~~~e~~la~i~-~~~~~~---~~d~l~~~v~~ye~~~  113 (336)
T d1b89a_          48 STLVHLGEYQAAVDGA--------RK--ANSTRTWKEVCFACVDGKEFRLAQMC-GLHIVV---HADELEELINYYQDRG  113 (336)
T ss_dssp             HHHHTTTCHHHHHHHH--------HH--HTCHHHHHHHHHHHHHTTCHHHHHHT-TTTTTT---CHHHHHHHHHHHHHTT
T ss_pred             HHHHhhccHHHHHHHH--------HH--cCCHHHHHHHHHHHHhCcHHHHHHHH-HHHhhc---CHHHHHHHHHHHHHcC
Confidence            3455566666665542        11  25778888888888887777654332 222222   3444455677788889


Q ss_pred             CchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375          210 EDLVALNLLRTLLSGSEDPKCLPALLIASKI  240 (444)
Q Consensus       210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~  240 (444)
                      .+++.+..++.++  ..++.+...+..++..
T Consensus       114 ~~e~Li~~Le~~~--~~~~~~~~~~~~L~~l  142 (336)
T d1b89a_         114 YFEELITMLEAAL--GLERAHMGMFTELAIL  142 (336)
T ss_dssp             CHHHHHHHHHHHT--TSTTCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHH--cCCccchHHHHHHHHH
Confidence            9999999999988  7788887776655543

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.53  E-value=9.8  Score=31.56  Aligned_cols=172  Identities=16%  Similarity=0.088  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHH-CCCchHHHHHHHHhhcCCCCC---CChHHHHHHH
Q 013375          164 LDHLSFAFSIAGDLSSLATQIEELLPGIINR-KERYHILALCYYG-AGEDLVALNLLRTLLSGSEDP---KCLPALLIAS  238 (444)
Q Consensus       164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~-~g~~~~A~~~~~~al~~~~~P---~~~~a~~~~~  238 (444)
                      ...++.+....++|++.+.+..+++..+|+- .+-..-|..+|-. .|....+++.+....  ...+   +......   
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie--~k~~~~~~~~~~i~---   80 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIE--QKTEGAEKKQQMAR---   80 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HC------CHHHHH---
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHcCcchhhHHHH---
Confidence            4456777888899999999999998888773 4444455555544 366666776666554  2222   2222110   


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCC----CcchhhhHHHH--HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh-
Q 013375          239 KICGEYPDLAEEGATFASRALECLGD----GCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS-  311 (444)
Q Consensus       239 ~~~~~~~~~~~eA~~~~~~al~~~~~----~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~-  311 (444)
                       - +. ..=-+|=...+..+++++..    ......+.+++  ..|..|...+..... .++..-.+.|..+|++|+ + 
T Consensus        81 -~-yk-~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~-~e~~~~~~~a~~aY~~A~-~~  155 (230)
T d2o02a1          81 -E-YR-EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAG-DDKKGIVDQSQQAYQEAF-EI  155 (230)
T ss_dssp             -H-HH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             -H-HH-HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCc-HHHHHHHHHHHHHHHHHH-HH
Confidence             0 00 00012333444444443311    11111122222  244444443332211 123344567777777766 4 


Q ss_pred             ----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013375          312 ----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK  345 (444)
Q Consensus       312 ----~~P~~~~a~---~~lg~~~~~-~g~~~~A~~~~~~al~  345 (444)
                          +.|.||--+   .|.+..+++ .|+.++|.+..++|+.
T Consensus       156 A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         156 SKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                467776433   344545444 5777777777777654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.85  E-value=12  Score=31.19  Aligned_cols=179  Identities=12%  Similarity=0.095  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--CCC-CHHHHHHHHHHHHHC-CCchHHHHHHHHhhc---CCCCCCCh
Q 013375          159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IIN-RKERYHILALCYYGA-GEDLVALNLLRTLLS---GSEDPKCL  231 (444)
Q Consensus       159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~l~~~-g~~~~A~~~~~~al~---~~~~P~~~  231 (444)
                      ...+-...++.+....++|++.+.+..++++.  +|+ +.+-..-|..+|-.. |....++..+.....   ...+++..
T Consensus         2 ~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~~   81 (236)
T d1o9da_           2 TAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHV   81 (236)
T ss_dssp             CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChHHH
Confidence            33444556777777889999999999988866  554 556566666666543 555566666644331   00111111


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CcchhhhHHH--HHhhhhhhhhhhhhhchHHHHhhHHHHHHHH
Q 013375          232 PALLIASKICGEYPDLAEEGATFASRALECLGD----GCDQMESTAN--CLLGISLSAQSKVAITDFDRATRQAKALQAL  305 (444)
Q Consensus       232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~----~~~~~~~~a~--~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~  305 (444)
                      ...    .-+ . ..=.+|=...+..+++++..    ......+.++  -..|..|...+.....+ ++..-.+.|.++|
T Consensus        82 ~~i----~~y-k-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~-e~~~~~~~a~~aY  154 (236)
T d1o9da_          82 NSI----REY-R-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGA-ERKEAAESTLTAY  154 (236)
T ss_dssp             HHH----HHH-H-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHH
T ss_pred             HHH----HHH-H-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCch-hHHHHHHHHHHHH
Confidence            110    000 0 00112223344444443211    1111112222  22444444433322211 2233456667777


Q ss_pred             HHHHHh-----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013375          306 VSAARS-----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK  345 (444)
Q Consensus       306 ~~al~~-----~~P~~~~a~---~~lg~~~~~-~g~~~~A~~~~~~al~  345 (444)
                      ++|. .     +.|.||--+   .|.+..+++ .|+.++|....++|+.
T Consensus       155 ~~A~-~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         155 KAAQ-DIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7665 3     567777432   455555554 4777777777777654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.57  E-value=10  Score=33.37  Aligned_cols=108  Identities=15%  Similarity=0.109  Sum_probs=55.9

Q ss_pred             cCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013375          128 MGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG  207 (444)
Q Consensus       128 ~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~  207 (444)
                      .+......|.++.|..++         ...++    |..+...+...++++.|.+...++     ++++.|..+...+..
T Consensus        20 i~~~c~~~~lye~A~~lY---------~~~~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~   81 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLY---------NNVSN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD   81 (336)
T ss_dssp             ---------CTTTHHHHH---------HHTTC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH---------HhCCC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Confidence            445556667777776654         11121    345556677888888888877766     567788888888777


Q ss_pred             CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013375          208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE  260 (444)
Q Consensus       208 ~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~  260 (444)
                      ..+..-|..+ ...+  ..+|+......    ..+...|.+++.+.+++.++.
T Consensus        82 ~~e~~la~i~-~~~~--~~~~d~l~~~v----~~ye~~~~~e~Li~~Le~~~~  127 (336)
T d1b89a_          82 GKEFRLAQMC-GLHI--VVHADELEELI----NYYQDRGYFEELITMLEAALG  127 (336)
T ss_dssp             TTCHHHHHHT-TTTT--TTCHHHHHHHH----HHHHHTTCHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHH-HHHh--hcCHHHHHHHH----HHHHHcCChHHHHHHHHHHHc
Confidence            7666544222 1112  24444333221    123345566666666666554