Citrus Sinensis ID: 013378

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
cccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccHEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHcccccccHHccccccccccccccccccccHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHccccccc
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMmalcpgldecSLAIYLSGFQQAIIGLGTLVMMpvignlsdqygrkamltlpltlsiIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLkddvpndddddltrpiiteetegvnqnesnspvkipvckkipsIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIswsawvpyATTAFSVLVVFAtpsfrsivskqvgpneqgkaqgcISGISSFanivsplifspltalflskgapfnfpgfsIMCIGLASMVAFIQSLmmshtpassksqnqccla
mgmekeikTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIiteetegvnqnesnspvkipvckKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMShtpassksqnqccla
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMltlpltlsiiplailaYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKddvpndddddLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
*******KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDV****************************VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG****GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM*****************
******I****HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD*************************KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV*PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS*******************
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE*********PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM****************
****KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD*T******ETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH**************
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
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MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
P70187490 Hippocampus abundant tran yes no 0.761 0.689 0.233 1e-15
Q96MC6490 Hippocampus abundant tran yes no 0.761 0.689 0.233 1e-15
Q5SR56506 Hippocampus abundant tran no no 0.713 0.626 0.238 3e-14
Q8CIA9507 Hippocampus abundant tran no no 0.713 0.625 0.224 6e-14
A4IF94502 Hippocampus abundant tran no no 0.713 0.631 0.241 1e-13
B2RYH9507 Hippocampus abundant tran no no 0.729 0.639 0.231 2e-12
P02982399 Tetracycline resistance p yes no 0.659 0.734 0.221 7e-12
Q07282405 Tetracycline resistance p yes no 0.668 0.733 0.220 2e-09
P02981396 Tetracycline resistance p yes no 0.668 0.75 0.207 7e-09
P51563393 Tetracycline resistance p yes no 0.677 0.765 0.233 6e-08
>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3 Back     alignment and function desciption
 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 162/386 (41%), Gaps = 48/386 (12%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 -ADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 187
            AD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 188 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 244
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 245 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 304
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 305 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG 364
           L   +G    + LGL    + +         W+ +A  A + +     P+  ++VS+   
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTAD 363

Query: 365 PNEQGKAQGCISGISSFANIVSPLIF 390
            ++QG  QG I+GI    N + P ++
Sbjct: 364 ADQQGVVQGMITGIRGLCNGLGPALY 389

Mus musculus (taxid: 10090)
>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2 Back     alignment and function description
>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3 Back     alignment and function description
>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3 Back     alignment and function description
>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1 Back     alignment and function description
>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1 Back     alignment and function description
>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 Back     alignment and function description
>sp|Q07282|TCR5_ECOLX Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1 Back     alignment and function description
>sp|P02981|TCR3_ECOLX Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1 Back     alignment and function description
>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
225428113439 PREDICTED: hippocampus abundant transcri 0.957 0.968 0.700 1e-165
224105113442 predicted protein [Populus trichocarpa] 0.961 0.966 0.661 1e-162
224083179447 predicted protein [Populus trichocarpa] 0.957 0.950 0.640 1e-160
255539072442 tetracycline transporter, putative [Rici 0.972 0.977 0.647 1e-156
118486381450 unknown [Populus trichocarpa] 0.959 0.946 0.633 1e-156
225459764442 PREDICTED: hippocampus abundant transcri 0.979 0.984 0.634 1e-154
356517952432 PREDICTED: hippocampus abundant transcri 0.959 0.986 0.622 1e-154
356509042432 PREDICTED: hippocampus abundant transcri 0.959 0.986 0.620 1e-154
357467111454 Hippocampus abundant transcript-like pro 0.966 0.944 0.578 1e-150
356574133443 PREDICTED: hippocampus abundant transcri 0.963 0.966 0.621 1e-149
>gi|225428113|ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|297744560|emb|CBI37822.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 302/431 (70%), Positives = 346/431 (80%), Gaps = 6/431 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L+HLFVTV L  F+  +V+PAITDVTM ALCPG DECSLAIYLSGFQQAIIGL
Sbjct: 1   MEK-LAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM PVIGNLSD+YGRKA+LT+P+ LSIIPLAILAY R+ + FYAY+ +RTLTAMV E
Sbjct: 60  GTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGE 119

Query: 123 GSINCLALAY-ADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 181
           GSINCLALAY ADNISE QRASAFG+L GV SA+FVCGTLAARFLST S FQ AT+VSM+
Sbjct: 120 GSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMI 179

Query: 182 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 241
           A  YMRVFLK+  P  D        + ++  G++ ++ NS  KI   KKIPS+ DLI LL
Sbjct: 180 ATVYMRVFLKETFPKGDSSQ----ALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLL 235

Query: 242 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 301
           +     SQAAVV FF+GL+EGG+QAS LYFLKA+FHFNKNQFAD+MLI G+ GTISQLLF
Sbjct: 236 KCRAAFSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLF 295

Query: 302 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 361
           MPLLAP + E KLLS+GLF  C N+F+ SI+WS WVPYA  A +   VFA P  RSI SK
Sbjct: 296 MPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPYAIAALAAFAVFANPCVRSIASK 355

Query: 362 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA 421
           QVGPNEQGKAQGCISGISS A I+SPLIFSPLTALFLS+GAPF FPGFSIMCIG ASM+A
Sbjct: 356 QVGPNEQGKAQGCISGISSSAQIISPLIFSPLTALFLSQGAPFYFPGFSIMCIGFASMIA 415

Query: 422 FIQSLMMSHTP 432
           FIQS M+   P
Sbjct: 416 FIQSTMIRAVP 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105113|ref|XP_002313691.1| predicted protein [Populus trichocarpa] gi|222850099|gb|EEE87646.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224083179|ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539072|ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis] gi|223551302|gb|EEF52788.1| tetracycline transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118486381|gb|ABK95031.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225459764|ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|302141709|emb|CBI18912.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356517952|ref|XP_003527649.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356509042|ref|XP_003523261.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357467111|ref|XP_003603840.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355492888|gb|AES74091.1| Hippocampus abundant transcript-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356574133|ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2039450456 AT2G16990 "AT2G16990" [Arabido 0.986 0.960 0.495 7.2e-107
TAIR|locus:2039440461 AT2G16980 [Arabidopsis thalian 0.954 0.919 0.469 9.4e-98
TAIR|locus:2039430446 MEE15 "maternal effect embryo 0.943 0.939 0.437 3.9e-92
TAIR|locus:2157592282 AT5G42210 "AT5G42210" [Arabido 0.572 0.900 0.511 1.8e-62
UNIPROTKB|Q5SR56506 HIATL1 "Hippocampus abundant t 0.342 0.300 0.243 2.1e-13
UNIPROTKB|A4IF94502 HIATL1 "Hippocampus abundant t 0.342 0.302 0.25 3.4e-13
UNIPROTKB|F1LX71470 Hiatl1 "Hippocampus abundant t 0.342 0.323 0.236 2.1e-12
UNIPROTKB|F1M7Q8506 Hiatl1 "Hippocampus abundant t 0.342 0.300 0.236 2.7e-12
RGD|1308377507 Hiatl1 "hippocampus abundant t 0.342 0.299 0.236 2.7e-12
MGI|MGI:1913881507 Hiatl1 "hippocampus abundant t 0.565 0.495 0.216 1.9e-11
TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 223/450 (49%), Positives = 287/450 (63%)

Query:     3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIG 61
             ME  I  L H+  TVFL  FA  MVVP ITDVT+ A+C G D+ CSLA+YL+GFQQ  IG
Sbjct:     1 MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIG 60

Query:    62 LGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVC 121
             +GT++MMPVIGNLSD+YG K +                YRR I FFY +Y  + LT+MVC
Sbjct:    61 MGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVC 120

Query:   122 EGSINCLALAY-ADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSM 180
             EG+++CLA AY A NI    R SAFGIL G+ + + + GTL ARFL     FQ + I   
Sbjct:   121 EGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFF 180

Query:   181 LAAAYMRVFLKXXXXXXXXXXLTRPIITEET-EGVNQNE------SNSPVKIPVC-KKIP 232
             +   YMRVFLK          L      +E  + +N         ++ P+K  V  KK  
Sbjct:   181 VGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYS 240

Query:   233 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL 292
             S++D+I L+++S    QA VV FFS  S+ GM+++FLYFLKA+F F+K QFADL+L+  +
Sbjct:   241 SLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITI 300

Query:   293 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT 352
              G+ISQL  +P  A  +GE KLLS GLF   INM I SISW+ WVPY TT F    +F  
Sbjct:   301 VGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVM 360

Query:   353 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIM 412
             PS   I S+QVGP EQGK QGCISG+ SF  +V+P +FSPLTALFLSK APF FPGFS++
Sbjct:   361 PSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLL 420

Query:   413 CIGLASMVAFIQSLMMSH--TPASSKSQNQ 440
             CI L+S++ F QSL++    TP  +K+ N+
Sbjct:   421 CISLSSLIGFFQSLLIKDVPTPPLNKAINK 450
GO:0008493 "tetracycline transporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SR56 HIATL1 "Hippocampus abundant transcript-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A4IF94 HIATL1 "Hippocampus abundant transcript-like protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LX71 Hiatl1 "Hippocampus abundant transcript-like protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M7Q8 Hiatl1 "Hippocampus abundant transcript-like protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1308377 Hiatl1 "hippocampus abundant transcript-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913881 Hiatl1 "hippocampus abundant transcript-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 4e-11
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 6e-10
pfam07690 346 pfam07690, MFS_1, Major Facilitator Superfamily 0.002
TIGR00880141 TIGR00880, 2_A_01_02, Multidrug resistance protein 0.002
TIGR00898505 TIGR00898, 2A0119, cation transport protein 0.002
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information 
 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 80/382 (20%), Positives = 129/382 (33%), Gaps = 43/382 (11%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+       L     E  L +           LG  +  P+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-------TAFSLGYALAQPLAG 53

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L + L L  + L +L +  S+        LR L  +         A   
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL---LVLRVLQGLGGGALFPAAAALI 110

Query: 133 ADNISERQRASAFGILLGVLSASFVCGTLAARFLST----TSAFQAATIVSMLAAAYMRV 188
           AD     +R  A G+L          G L    L++     +AF    I+++LAA    +
Sbjct: 111 ADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170

Query: 189 FLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS 248
            L    P              E++     E      +P  K +     L  LL       
Sbjct: 171 LLPRPPP--------------ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL------- 209

Query: 249 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI 308
                A            ++L   +     +      L+ +AGL G I +LL   L   +
Sbjct: 210 -----ALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 264

Query: 309 LGEAKLLSLGLFAACINMFICSISW---SAWVPYATTAFSVLVVFATPSFRSIVSKQVGP 365
               +LL   L      + +  +S    S W+  A            P+  ++VS     
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324

Query: 366 NEQGKAQGCISGISSFANIVSP 387
            E+G A G  +   S    + P
Sbjct: 325 EERGTASGLYNTAGSLGGALGP 346

Length = 346
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein Back     alignment and domain information
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 100.0
PRK03545390 putative arabinose transporter; Provisional 100.0
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 100.0
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 100.0
PRK11663434 regulatory protein UhpC; Provisional 100.0
PRK11646400 multidrug resistance protein MdtH; Provisional 100.0
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 100.0
TIGR00900365 2A0121 H+ Antiporter protein. 100.0
PRK09705393 cynX putative cyanate transporter; Provisional 100.0
PRK10489417 enterobactin exporter EntS; Provisional 100.0
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 100.0
PRK03633381 putative MFS family transporter protein; Provision 100.0
PRK10642490 proline/glycine betaine transporter; Provisional 100.0
PRK14995495 methyl viologen resistance protein SmvA; Provision 100.0
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 100.0
PRK05122399 major facilitator superfamily transporter; Provisi 100.0
PRK09874408 drug efflux system protein MdtG; Provisional 100.0
PRK10213394 nepI ribonucleoside transporter; Reviewed 100.0
TIGR00893399 2A0114 d-galactonate transporter. 100.0
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 100.0
TIGR00891405 2A0112 putative sialic acid transporter. 100.0
PRK10091382 MFS transport protein AraJ; Provisional 100.0
PRK09952438 shikimate transporter; Provisional 100.0
PRK11195393 lysophospholipid transporter LplT; Provisional 100.0
PRK12307426 putative sialic acid transporter; Provisional 100.0
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 100.0
PRK15402406 multidrug efflux system translocase MdfA; Provisio 100.0
PRK10504471 putative transporter; Provisional 100.0
PRK03699394 putative transporter; Provisional 100.0
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 100.0
PRK10406432 alpha-ketoglutarate transporter; Provisional 100.0
PRK10054395 putative transporter; Provisional 100.0
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 100.0
PRK12382392 putative transporter; Provisional 100.0
PRK10077479 xylE D-xylose transporter XylE; Provisional 100.0
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 100.0
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 100.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 100.0
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 100.0
TIGR00897402 2A0118 polyol permease family. This family of prot 100.0
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 100.0
TIGR00881379 2A0104 phosphoglycerate transporter family protein 100.0
PRK15075434 citrate-proton symporter; Provisional 100.0
PRK11652394 emrD multidrug resistance protein D; Provisional 100.0
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 100.0
PRK15403413 multidrug efflux system protein MdtM; Provisional 100.0
TIGR00895398 2A0115 benzoate transport. 100.0
PRK10133438 L-fucose transporter; Provisional 100.0
PRK10473392 multidrug efflux system protein MdtL; Provisional 100.0
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 100.0
PLN00028476 nitrate transmembrane transporter; Provisional 100.0
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 100.0
PRK15011393 sugar efflux transporter B; Provisional 100.0
TIGR00898505 2A0119 cation transport protein. 100.0
TIGR00902382 2A0127 phenyl proprionate permease family protein. 100.0
PRK11043401 putative transporter; Provisional 100.0
PRK03893496 putative sialic acid transporter; Provisional 100.0
PRK09528420 lacY galactoside permease; Reviewed 100.0
TIGR00892455 2A0113 monocarboxylate transporter 1. 100.0
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 100.0
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 100.0
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 100.0
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 100.0
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 100.0
PRK11010491 ampG muropeptide transporter; Validated 100.0
KOG0569485 consensus Permease of the major facilitator superf 100.0
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 100.0
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 100.0
KOG2615451 consensus Permease of the major facilitator superf 100.0
TIGR00896355 CynX cyanate transporter. This family of proteins 100.0
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.98
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.98
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.98
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.98
KOG2532466 consensus Permease of the major facilitator superf 99.98
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.98
PRK11902402 ampG muropeptide transporter; Reviewed 99.97
TIGR00901356 2A0125 AmpG-related permease. 99.97
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.97
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.97
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.97
KOG1330493 consensus Sugar transporter/spinster transmembrane 99.96
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.96
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.96
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.96
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.96
KOG2533495 consensus Permease of the major facilitator superf 99.96
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.96
KOG0254513 consensus Predicted transporter (major facilitator 99.95
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 99.95
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.95
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.94
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.94
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.94
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.94
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.94
PRK10429473 melibiose:sodium symporter; Provisional 99.93
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 99.93
TIGR00805 633 oat sodium-independent organic anion transporter. 99.93
PRK09669444 putative symporter YagG; Provisional 99.93
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.93
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 99.93
PRK09848448 glucuronide transporter; Provisional 99.93
COG2270438 Permeases of the major facilitator superfamily [Ge 99.93
PF13347428 MFS_2: MFS/sugar transport protein 99.92
KOG2816463 consensus Predicted transporter ADD1 (major facili 99.92
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.91
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.91
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.89
PTZ00207591 hypothetical protein; Provisional 99.89
COG2211467 MelB Na+/melibiose symporter and related transport 99.89
PRK11462460 putative transporter; Provisional 99.89
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.88
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.87
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.87
KOG2325488 consensus Predicted transporter/transmembrane prot 99.86
KOG2563480 consensus Permease of the major facilitator superf 99.77
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.74
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.73
KOG3626735 consensus Organic anion transporter [Secondary met 99.71
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 99.65
PRK10054 395 putative transporter; Provisional 99.63
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 99.63
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.58
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.56
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.56
PRK11646 400 multidrug resistance protein MdtH; Provisional 99.54
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.54
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 99.53
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 99.53
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.52
PRK10642490 proline/glycine betaine transporter; Provisional 99.52
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.51
TIGR00900 365 2A0121 H+ Antiporter protein. 99.51
PRK10489 417 enterobactin exporter EntS; Provisional 99.49
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.49
PRK09874408 drug efflux system protein MdtG; Provisional 99.49
PRK03545 390 putative arabinose transporter; Provisional 99.49
PRK11663 434 regulatory protein UhpC; Provisional 99.48
PRK09528420 lacY galactoside permease; Reviewed 99.48
PRK12382 392 putative transporter; Provisional 99.47
PRK10213 394 nepI ribonucleoside transporter; Reviewed 99.47
PRK10504 471 putative transporter; Provisional 99.47
PRK05122 399 major facilitator superfamily transporter; Provisi 99.47
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.47
PRK11195 393 lysophospholipid transporter LplT; Provisional 99.47
PRK10207 489 dipeptide/tripeptide permease B; Provisional 99.46
PRK10091 382 MFS transport protein AraJ; Provisional 99.46
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 99.46
PRK03633 381 putative MFS family transporter protein; Provision 99.45
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 99.44
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 99.44
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 99.44
PRK09584 500 tppB putative tripeptide transporter permease; Rev 99.44
PRK11043 401 putative transporter; Provisional 99.43
PLN00028 476 nitrate transmembrane transporter; Provisional 99.43
TIGR00891 405 2A0112 putative sialic acid transporter. 99.43
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.42
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.42
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.42
PRK03699 394 putative transporter; Provisional 99.41
TIGR00895 398 2A0115 benzoate transport. 99.41
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.4
PRK15011393 sugar efflux transporter B; Provisional 99.4
TIGR00893 399 2A0114 d-galactonate transporter. 99.4
PRK03893496 putative sialic acid transporter; Provisional 99.4
TIGR00899 375 2A0120 sugar efflux transporter. This family of pr 99.39
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.39
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.39
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 99.38
TIGR00897 402 2A0118 polyol permease family. This family of prot 99.38
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.38
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.37
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 99.37
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.36
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.35
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.34
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 99.32
PRK09705 393 cynX putative cyanate transporter; Provisional 99.32
PRK15403 413 multidrug efflux system protein MdtM; Provisional 99.32
PRK12307 426 putative sialic acid transporter; Provisional 99.32
PRK09556 467 uhpT sugar phosphate antiporter; Reviewed 99.32
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 99.31
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 99.3
KOG3762618 consensus Predicted transporter [General function 99.3
KOG0637498 consensus Sucrose transporter and related proteins 99.29
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 99.29
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.27
TIGR00882 396 2A0105 oligosaccharide:H+ symporter. 99.27
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.25
PRK10133 438 L-fucose transporter; Provisional 99.24
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 99.23
KOG3764 464 consensus Vesicular amine transporter [Intracellul 99.21
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.2
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.2
PRK11902 402 ampG muropeptide transporter; Reviewed 99.19
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.19
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 99.18
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.18
KOG1330 493 consensus Sugar transporter/spinster transmembrane 99.18
PRK10406 432 alpha-ketoglutarate transporter; Provisional 99.18
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.17
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.15
KOG3098461 consensus Uncharacterized conserved protein [Funct 99.15
PRK11010491 ampG muropeptide transporter; Validated 99.14
PRK09952 438 shikimate transporter; Provisional 99.13
PRK10077 479 xylE D-xylose transporter XylE; Provisional 99.13
COG2223 417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.13
TIGR00805 633 oat sodium-independent organic anion transporter. 99.12
KOG2615 451 consensus Permease of the major facilitator superf 99.11
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.1
TIGR00896 355 CynX cyanate transporter. This family of proteins 99.1
TIGR00887 502 2A0109 phosphate:H+ symporter. This model represen 99.1
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.1
PTZ00207 591 hypothetical protein; Provisional 99.09
TIGR00901 356 2A0125 AmpG-related permease. 99.09
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.08
COG2270438 Permeases of the major facilitator superfamily [Ge 99.08
TIGR00898505 2A0119 cation transport protein. 99.08
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.07
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.07
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.07
PRK15075 434 citrate-proton symporter; Provisional 99.05
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.0
COG0738 422 FucP Fucose permease [Carbohydrate transport and m 99.0
KOG2532 466 consensus Permease of the major facilitator superf 98.93
KOG3810433 consensus Micronutrient transporters (folate trans 98.93
PRK09848448 glucuronide transporter; Provisional 98.91
KOG0569485 consensus Permease of the major facilitator superf 98.91
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 98.88
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.88
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 98.85
PF13347428 MFS_2: MFS/sugar transport protein 98.84
TIGR01272310 gluP glucose/galactose transporter. Disruption of 98.84
PRK10429 473 melibiose:sodium symporter; Provisional 98.82
PRK09669 444 putative symporter YagG; Provisional 98.81
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 98.79
COG0477338 ProP Permeases of the major facilitator superfamil 98.74
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 98.7
PF13000544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 98.69
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.69
KOG3574510 consensus Acetyl-CoA transporter [Inorganic ion tr 98.68
PRK11462 460 putative transporter; Provisional 98.67
KOG2533 495 consensus Permease of the major facilitator superf 98.67
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.66
KOG0254 513 consensus Predicted transporter (major facilitator 98.66
KOG3762618 consensus Predicted transporter [General function 98.65
TIGR00788 468 fbt folate/biopterin transporter. The only functio 98.57
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 98.57
COG2211467 MelB Na+/melibiose symporter and related transport 98.56
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 98.56
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.52
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.5
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 98.39
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 98.38
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 98.38
PF1283277 MFS_1_like: MFS_1 like family 98.37
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 98.34
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 98.31
KOG2563 480 consensus Permease of the major facilitator superf 98.25
KOG3880409 consensus Predicted small molecule transporter inv 98.24
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 98.22
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 98.21
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 98.19
KOG2325 488 consensus Predicted transporter/transmembrane prot 98.19
KOG2816 463 consensus Predicted transporter ADD1 (major facili 98.08
PF1283277 MFS_1_like: MFS_1 like family 98.08
COG3202509 ATP/ADP translocase [Energy production and convers 98.08
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 97.98
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 97.97
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 97.97
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 97.78
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 97.66
COG0477 338 ProP Permeases of the major facilitator superfamil 97.4
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 97.34
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 97.25
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 97.23
KOG3626 735 consensus Organic anion transporter [Secondary met 97.15
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 96.98
KOG3098461 consensus Uncharacterized conserved protein [Funct 96.85
KOG2601503 consensus Iron transporter [Inorganic ion transpor 96.81
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 96.63
KOG0637 498 consensus Sucrose transporter and related proteins 96.59
PRK03612 521 spermidine synthase; Provisional 96.47
KOG3574 510 consensus Acetyl-CoA transporter [Inorganic ion tr 96.43
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 96.33
PRK03612521 spermidine synthase; Provisional 96.21
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 96.18
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 95.91
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 95.76
KOG3097390 consensus Predicted membrane protein [Function unk 94.43
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 93.68
KOG1237 571 consensus H+/oligopeptide symporter [Amino acid tr 93.04
PRK15015 701 carbon starvation protein A; Provisional 92.85
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 92.45
PF07857254 DUF1632: CEO family (DUF1632); InterPro: IPR012435 91.95
KOG4332 454 consensus Predicted sugar transporter [Carbohydrat 91.92
PF13000 544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 89.76
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 88.51
KOG2881294 consensus Predicted membrane protein [Function unk 86.45
KOG4830412 consensus Predicted sugar transporter [Carbohydrat 84.38
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 82.64
COG5336116 Uncharacterized protein conserved in bacteria [Fun 81.88
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-38  Score=282.38  Aligned_cols=370  Identities=16%  Similarity=0.176  Sum_probs=303.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHhHhHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccccCchHHHHH
Q 013378            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (444)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (444)
                      +..+..+.++.|.......+..+.+|++.+|        +++|....|+..+.|.++..+++|+...+.||+.||++++.
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~d--------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAAD--------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            3456677788888888899999999999844        47777999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhccCchhhHHHHHHHHhhhhcccchhhhhhhhh-hccCChhhhhHHHHHHHHHHHhhhhhHHHhH--
Q 013378           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY-ADNISERQRASAFGILLGVLSASFVCGTLAA--  163 (444)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~--  163 (444)
                      .+.++.++++++++++|   ++.+.++|++.|+ +.|.+++...++ .+..|+++|++++++...+.+++.++|..++  
T Consensus        84 ~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          84 LLALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   9999999999999 778999999999 9999999999999999999999988876555  


Q ss_pred             --HhhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccccccccCCCCCCCcCCccccCCchHHHHHHh
Q 013378          164 --RFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  241 (444)
Q Consensus       164 --~~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (444)
                        .++|||++|++.+.++++..+..+..+|  |++.+++                             ...+.++.++ .
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------------------------~~~~~~~~~~-~  207 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------------------------LPGPLRTLLR-L  207 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------------------------CCcchhHHHH-H
Confidence              4569999999999999999999999999  2111111                             0012233232 6


Q ss_pred             ccchhHHHHHHHHHHHHhhhcchhHHHHHHHhhccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhCchhHHHHHHHH
Q 013378          242 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  321 (444)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  321 (444)
                      +++|+++...+..++...+.+..++|+.+++++..|+|.+..++.+..++++..+++ ..+|++.|| +.++.+.....+
T Consensus       208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999998 666999999 888888888777


Q ss_pred             HHHHHHHhhhccC-CchHHH-HHHHHhhhhhhhHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 013378          322 ACINMFICSISWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS  399 (444)
Q Consensus       322 ~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  399 (444)
                      ..+.++.+.+..+ .+.... .+++++..............+.. ++.+..+.+++....|+|..+|..++|.++|+. +
T Consensus       286 ~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g  363 (394)
T COG2814         286 LALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-G  363 (394)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Confidence            7777776666554 333333 44456665555555566666633 588999999999999999999999999999985 4


Q ss_pred             cCCCcccchhHHHHHHHHHHHHHHHHHhcccC
Q 013378          400 KGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  431 (444)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (444)
                      +..       ..++.+++.+++..+.....++
T Consensus       364 ~~~-------~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         364 YAA-------TGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             hHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence            433       3366666666666665544443

>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>KOG3097 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2881 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
2cfq_A417 Lactose permease; transport, transport mechanism, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 4e-04
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 Back     alignment and structure
 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 53/379 (13%), Positives = 104/379 (27%), Gaps = 34/379 (8%)

Query: 54  GFQQAIIGLGTLVMMPVIGNLSDQYG-RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA 112
           G   A I L +L+  P+ G LSD+ G RK +L +   + ++      +       Y    
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 113 LRTLTAMV---CEGSINCLALAYADNISERQRASAFGILLGVLSASFVCGTLAARFL--- 166
              +  +    C  +      A+ + +S R+    FG         +  G      +   
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVS-RRSNFEFGRARMFGCVGWALGASIVGIMFTI 164

Query: 167 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP 226
           +    F   +  +++ A  +     D   +              T       ++S   + 
Sbjct: 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSS-------------ATVANAVGANHSAFSLK 211

Query: 227 VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADL 286
           +  ++     L  L    V         F          A+F     A        F  +
Sbjct: 212 LALELFRQPKLWFLS-LYVIGVSCTYDVFDQQF------ANFFTSFFATGEQGTRVFGYV 264

Query: 287 MLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAF-S 345
             +  L      + F PL+   +G    L L      + +   S + SA           
Sbjct: 265 TTMGELLNASI-MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHM 323

Query: 346 VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLTALFLSKGAPF 404
             V F        ++ Q                    A I   ++   +       G   
Sbjct: 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQG 380

Query: 405 NFPGFSIMCIGLASMVAFI 423
            +    ++ +G   +  F 
Sbjct: 381 AYLVLGLVALGFTLISVFT 399
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 100.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 100.0
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 100.0
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 100.0
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 100.0
2cfq_A417 Lactose permease; transport, transport mechanism, 100.0
2xut_A524 Proton/peptide symporter family protein; transport 99.97
1pw4_A 451 Glycerol-3-phosphate transporter; transmembrane, i 99.61
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 99.59
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.54
2xut_A 524 Proton/peptide symporter family protein; transport 99.53
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.47
2cfq_A417 Lactose permease; transport, transport mechanism, 99.47
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.17
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
Probab=100.00  E-value=2.4e-39  Score=308.95  Aligned_cols=386  Identities=12%  Similarity=0.089  Sum_probs=299.3

Q ss_pred             hhHHHHHHHHHHHHHHHhHhHhHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccccCchHHHHHHH
Q 013378            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (444)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (444)
                      .+..+.+..+...++.....+.+|.+.        +++ .+..+.|++.+++.++..++++++|+++||+|||++++.+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           29 IFLGIFFGYAAYYLVRKNFALAMPYLV--------EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHTT--------SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            345556666777777788888888775        444 55667899999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHh----ccCchhhHHHHHHHHhhhhcccchhhhhhhhh-hccCChhhhhHHHHHHHHHHHhhhhhHHHhH
Q 013378           89 TLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAY-ADNISERQRASAFGILLGVLSASFVCGTLAA  163 (444)
Q Consensus        89 ~~~~~~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~  163 (444)
                      ++.+++.+++++    +++   ++.++++|+++|++ .+...+...++ .|++|+++|++++++.+...++|.++||.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHHH-HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHH-hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    888   89999999999994 47777889999 9999999999999999999999999999998


Q ss_pred             Hh----hh-hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccccccccCCCCCCCcCCccccCCchHHH-
Q 013378          164 RF----LS-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-  237 (444)
Q Consensus       164 ~~----l~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  237 (444)
                      +.    .+ ||++|++.+++.++..++.++.+||++++.+.++++++..+..      + +.++ +   .+++.+.++. 
T Consensus       176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~-~---~~~~~~~~~~~  244 (451)
T 1pw4_A          176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP------D-DYNE-K---AEQELTAKQIF  244 (451)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------CCTHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccc------c-cchh-h---hhcccccccch
Confidence            76    36 9999999998877777777778898776543221111100000      0 0000 0   0011122222 


Q ss_pred             HHHhccchhHHHHHHHHHHHHhhhcchhHHHHHHHhhccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh--CchhHH
Q 013378          238 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL  315 (444)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~  315 (444)
                      .+..+++|.++...+..++..........+.|.|+++.+|+++.+.+......+++.+++. +..+++.||+  ++|+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~  323 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGAT  323 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhH
Confidence            3457788999998888888888888889999999999889999999999999999999997 5568999999  999888


Q ss_pred             HHHHHHHH-HHHHHhhhcc--CCchHHH-HHHHHhhhhhhhHHHHHHHhhccCCCcchhHHHHHHHHHHH-HHHHhHHHH
Q 013378          316 SLGLFAAC-INMFICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIF  390 (444)
Q Consensus       316 ~~~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~  390 (444)
                      ..+..+.. ++.+++.+.+  +.+.... .++.|++.+...+...++..|.+|+++||++.|+.+...++ |..++|.+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~  403 (451)
T 1pw4_A          324 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  403 (451)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77776665 6666666554  2333333 55667777888888899999999999999999999999999 999999999


Q ss_pred             HHHHHhhhhcCCCcccchhHHHHHHHHHHHHHHHHHh
Q 013378          391 SPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  427 (444)
Q Consensus       391 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (444)
                      |.+.+.. ++.       ..+.+.+++.+++.+....
T Consensus       404 g~l~~~~-g~~-------~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          404 GYTVDFF-GWD-------GGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHSS-CSH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CcH-------HHHHHHHHHHHHHHHHHHH
Confidence            9999875 322       2445555555555444443
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 444
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 3e-06
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 56/427 (13%), Positives = 122/427 (28%), Gaps = 15/427 (3%)

Query: 4   EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLG 63
            +   T   L   +FL  F        +     +A+ P L E   +    GF  + I + 
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIA 71

Query: 64  TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF-FYAYYALRTLTAMVCE 122
                 ++G++SD+   +  L   L L+   +  + +    +      + L  L      
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131

Query: 123 GSINCLALAYADNISERQRASAFGILLGVLS-ASFVCGTLAARFLSTTSAFQAATIVSML 181
                         S+++R     +     +    +   L    ++  + + AA  +   
Sbjct: 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191

Query: 182 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 241
            A  + +F    + +        PI   + +  +     +       +++ + +  +  +
Sbjct: 192 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE------QELTAKQIFMQYV 245

Query: 242 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 301
             +  L   A+   F  L   G+      +LK   HF  ++ +    +   AG    LL 
Sbjct: 246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 305

Query: 302 MPLL-----APILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFR 356
             +                   +  A I  ++                  L+        
Sbjct: 306 GWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG 365

Query: 357 SIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIG 415
               +       G A G          ++ +  I       F   G      G SI+ + 
Sbjct: 366 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425

Query: 416 LASMVAF 422
           L  +V  
Sbjct: 426 LLIVVMI 432

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 100.0
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 100.0
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.55
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-36  Score=287.34  Aligned_cols=341  Identities=13%  Similarity=0.063  Sum_probs=257.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhccccccccCchHHHHHHHHHhHHHHHHHHhccCc-hhhHHHHHHHHhhhhcccc
Q 013378           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEG  123 (444)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~g  123 (444)
                      |.+.+..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++. ..++.+++.|++.|++ .+
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~  131 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF-QG  131 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHH-HH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHh-hh
Confidence            346777888999999999999999999999999999999999999999999998876421 0178999999999994 47


Q ss_pred             hhhhhhhhh-hccCChhhhhHHHHHHHHHHHhhhhhHHHhHHhh-----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 013378          124 SINCLALAY-ADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPND  197 (444)
Q Consensus       124 ~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~  197 (444)
                      ...+...++ .|++|+++|++++++.+.+.++|..++|.+++..     +||+.|++.+.+.++..++.++..+|+|++.
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC  211 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc
Confidence            777888899 9999999999999999999999999998877653     7899999998888777777777788776654


Q ss_pred             CCCCCCCCcccccccccccCCCCCCCcCCccccCCchHHHHHHhccchhHHHHHHHHHHHHhhhcchhHHHHHHHhhccC
Q 013378          198 DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH  277 (444)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  277 (444)
                      ...++++...+..          ++..++.+++....+...+..++++.++......++..........+.|.|+++..+
T Consensus       212 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (447)
T d1pw4a_         212 GLPPIEEYKNDYP----------DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  281 (447)
T ss_dssp             CCCSCTTTCCC-----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             ccchhhhhhhhcc----------cchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccc
Confidence            4321111100000          000111111111223345557888999888888888888888889999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhCchhHHHHHHHH---HHHHHHHhhhcc--CCchHHH-HHHHHhhhhhh
Q 013378          278 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA---ACINMFICSISW--SAWVPYA-TTAFSVLVVFA  351 (444)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~  351 (444)
                      ++..+.+.......+..+++. +..+++.||.++++........   ..++........  +.+.... .++.+++.+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  360 (447)
T d1pw4a_         282 FALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP  360 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             cccchhhhhhhcchhhhhhhh-hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997 6668999999876543332222   222222222222  2333333 45567777778


Q ss_pred             hHHHHHHHhhccCCCcchhHHHHHHHHHHH-HHHHhHHHHHHHHHhh
Q 013378          352 TPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALF  397 (444)
Q Consensus       352 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~  397 (444)
                      .+....+..|.+|++.||++.|+.+...++ |..++|.+.|.+.|..
T Consensus       361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~  407 (447)
T d1pw4a_         361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  407 (447)
T ss_dssp             HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888899999999999999999999998887 4567899999999876
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure