Citrus Sinensis ID: 013388

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MPSRLSSIVQEPKTLFEKGIKLLNALSELEELQPAVQQKINELNRKKTNQVTGWSHASQNSTLEWPSLKKQTLTNYDVTKALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHWQPPKSDKLVKYPNNIDLTPIEIPSLRQPSESSIKIKTDSSNVEPEKSSVQSISTPNDEIEIHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR
ccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHcccccEEEEEEEEEEEEccEEEEEEEEEccccccccccccccHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHccccccEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEccccEEEEccc
ccccccHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccHccccccccHHHHHHHHHccccccccHcHccHccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHccccEHHEEEccccccEEEEEEEEEEcccccccccccccHHHHHHHHHccccEEEEEEcccccccEEEccccHccccHHHHHcHcHEEEEEcccccccccEEEEEcccccHHHHHcccccccccccccccccccccccccEEEccccEEEEEEcc
mpsrlssivqEPKTLFEKGIKLLNALSELEELQPAVQQKINELNrkktnqvtgwshasqnstlewpslkkqtltnydvtkalrlpsrelayqgsipqqlaytrpvDEQFRRmslnfprpnaetlsrhsllgpnglyghwqppksdklvkypnnidltpieipslrqpsessikiktdssnvepekssvqsistpndeieihrteepcsmisfetseapnsadvirqpspppvlTEVQDLIAAmspqvtetecqvgnslsdafdrseplqlhISTTMMDNFMKLAKSntdknletcGILAGSLKNRKFYITALiipkqestsdscqatnEEEIFevqdkrslfplgwihthptqscfmssidvhthysyqimlpesvaivmapqdatrkhgifrltspggmsvirqcqqrgfhphdpppdggpiykpctdvymnpnlkfdvidlr
mpsrlssivqepKTLFEKGIKLLNALSELEELQPAVQQKINELNrkktnqvtgwshasqnstlewpslkkqtLTNYDVTKALRLPSRelayqgsipqqlaYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHWQPPKSDKLVKYPNNIDLTpieipslrqpsessikiktdssnvepekssvqsistpndeieIHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIipkqestsdsCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR
MPSRLSSIVQEPKTLFEKGIKLLNALSELEELQPAVQQKINELNRKKTNQVTGWSHASQNSTLEWPSLKKQTLTNYDVTKALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHWQPPKSDKLVKYPNNIDLTPIEIPSLRQPSESSIKIKTDSSNVEPEKSSVQSISTPNDEIEIHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFhphdpppdggpIYKPCTDVYMNPNLKFDVIDLR
**************LFEKGIKLLNAL**************************************WPSLKKQTLTNYDVTKALRLPSRELAYQGSIPQQLAYT***************************LGPNGLYGHWQ******LVKYPNNIDL*****************************************************************************************************************LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIP****************IFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQC****************IYKPCTDVYMNPNLKFDVI***
********************KLLNALSELEELQPAVQQKIN**********************************************************************************************************************************************************************************************************************************LQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGM******************DGGPIYKPCTDVYMNPNLKFDVIDLR
MPSRLSSIVQEPKTLFEKGIKLLNALSELEELQPAVQQKINELNRKK************NSTLEWPSLKKQTLTNYDVTKALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHWQPPKSDKLVKYPNNIDLTPIEIPSLRQPS**************************NDEIEIHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQ**********NEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR
*****SSIVQEPKTLFEKGIKLLNALSELEELQPAVQQKINELNRKKT****************************************************************SLNFPRPNAETLSRHSLLGPNGLYGHWQPPKSDKLVKYPNN***************************************************************************************************************SEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR
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MPSRLSSIVQEPKTLFEKGIKLLNAxxxxxxxxxxxxxxxxxxxxxKTNQVTGWSHASQNSTLEWPSLKKQTLTNYDVTKALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHWQPPKSDKLVKYPNNIDLTPIEIPSLRQPSESSIKIKTDSSNVEPEKSSVQSISTPNDEIEIHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
Q8VYB5507 AMSH-like ubiquitin thioe yes no 0.950 0.832 0.643 1e-155
Q5PNU3507 AMSH-like ubiquitin thioe no no 0.943 0.826 0.465 1e-102
Q6NKP9223 AMSH-like ubiquitin thioe no no 0.394 0.784 0.594 3e-67
Q54Q40715 Probable ubiquitin thioes yes no 0.454 0.282 0.454 3e-46
Q9P371435 AMSH-like protease sst2 O yes no 0.355 0.363 0.535 3e-45
Q96FJ0436 AMSH-like protease OS=Hom yes no 0.452 0.461 0.406 8e-42
Q76N33436 AMSH-like protease OS=Mus yes no 0.373 0.380 0.468 1e-41
Q5R558436 AMSH-like protease OS=Pon yes no 0.452 0.461 0.402 3e-41
O95630424 STAM-binding protein OS=H no no 0.355 0.372 0.490 1e-40
Q6TH47418 STAM-binding protein-like yes no 0.328 0.349 0.523 2e-40
>sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1 Back     alignment and function desciption
 Score =  549 bits (1415), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/426 (64%), Positives = 326/426 (76%), Gaps = 4/426 (0%)

Query: 20  IKLLNALSELEELQPAVQQKINELNRKKTNQVTGWSHASQNSTLEWPSLKKQTLTNYDVT 79
           ++LL+ L+ELE+L+P VQQ+I+EL  K   +    +H + N +L W S  K +  +YD  
Sbjct: 85  MRLLDVLTELEKLKPVVQQRIDELYPKLKPRYNVQAHPA-NGSLGWSSAVKPSFNSYDHA 143

Query: 80  KALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHW 139
           K    P     Y GS  QQ     P++E+FR+MS+NF RPN ETLS+HS+LGP GL   W
Sbjct: 144 KVRNPPGHNSGYMGSRGQQFLNAAPLEERFRKMSVNF-RPNEETLSKHSILGPGGLSAQW 202

Query: 140 QPPKSDKLVKYPNNIDLTPIEIPSLRQPSESSIKIKTDSSNVEPEKSSVQSISTPNDEIE 199
           QPPK D  V+YP+NID +P+ IPS +Q  +S   I T+ SN EPEK  V+     N++I+
Sbjct: 203 QPPKYDTKVQYPSNIDFSPVVIPSFQQLVDSKPMI-TNGSNDEPEKPIVEPSVASNEKIQ 261

Query: 200 IHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLS 259
            + TEE  SMISFE  E+ N  ++IRQPSPPPVL EVQDL+ A+ P+V E EC + NSL 
Sbjct: 262 KNYTEELSSMISFEEPESVNENNLIRQPSPPPVLAEVQDLVPALCPEVREPECMIENSLP 321

Query: 260 DAFDRSE-PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQE 318
           D   RSE PL+LHI+T+MMD FM+LAKSNT KNLETCGILAGSLKNRKFYITALIIPKQE
Sbjct: 322 DESLRSESPLELHIATSMMDTFMRLAKSNTKKNLETCGILAGSLKNRKFYITALIIPKQE 381

Query: 319 STSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAI 378
           STSDSCQATNEEEIFEVQDK+SLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPE+VAI
Sbjct: 382 STSDSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAI 441

Query: 379 VMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKF 438
           VMAPQD++R HGIFRLT+PGGM+VIR C +RGFH H  P DGGPIY  C +VYMNPNLKF
Sbjct: 442 VMAPQDSSRNHGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKF 501

Query: 439 DVIDLR 444
           DVIDLR
Sbjct: 502 DVIDLR 507
Zinc metalloprotease that cleaves 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: -
>sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2 Back     alignment and function description
>sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2 PE=2 SV=1 Back     alignment and function description
>sp|Q54Q40|D1039_DICDI Probable ubiquitin thioesterase DG1039 OS=Dictyostelium discoideum GN=DG1039 PE=3 SV=1 Back     alignment and function description
>sp|Q9P371|SST2_SCHPO AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 Back     alignment and function description
>sp|Q96FJ0|STALP_HUMAN AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2 Back     alignment and function description
>sp|Q76N33|STALP_MOUSE AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R558|STALP_PONAB AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1 Back     alignment and function description
>sp|O95630|STABP_HUMAN STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1 Back     alignment and function description
>sp|Q6TH47|STBPA_DANRE STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
255586071514 amsh, putative [Ricinus communis] gi|223 0.977 0.844 0.728 0.0
356513064509 PREDICTED: AMSH-like ubiquitin thioleste 0.954 0.833 0.663 1e-164
449516695503 PREDICTED: AMSH-like ubiquitin thioester 0.975 0.860 0.635 1e-162
449439413499 PREDICTED: AMSH-like ubiquitin thioester 0.975 0.867 0.638 1e-162
225455974506 PREDICTED: AMSH-like ubiquitin thioleste 0.968 0.849 0.638 1e-161
224133090497 predicted protein [Populus trichocarpa] 0.930 0.830 0.693 1e-160
356531196520 PREDICTED: AMSH-like ubiquitin thioleste 0.954 0.815 0.649 1e-158
357500307513 STAM-binding protein [Medicago truncatul 0.954 0.826 0.637 1e-157
356520605519 PREDICTED: AMSH-like ubiquitin thioleste 0.954 0.816 0.649 1e-156
356524439501 PREDICTED: AMSH-like ubiquitin thioleste 0.936 0.830 0.64 1e-154
>gi|255586071|ref|XP_002533700.1| amsh, putative [Ricinus communis] gi|223526395|gb|EEF28683.1| amsh, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/438 (72%), Positives = 357/438 (81%), Gaps = 4/438 (0%)

Query: 10  QEPKTLFEKGIKLLNALSELEELQPAVQQKINELNRKKTNQVTGWSHASQNSTLEWPSLK 69
           Q+ K ++ K  KLLNA+ ELE+L+PAVQQKINELNRK T+QV GW   +QN +LEWP +K
Sbjct: 78  QQSKKIYLKQ-KLLNAVKELEQLKPAVQQKINELNRKHTHQVNGWGSVNQNDSLEWPPVK 136

Query: 70  KQTLTNYDV--TKALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRH 127
           K+TLT YD   TKA+   +RE  Y GS  QQL+Y RPV EQFR+MSLNFP+P  ETLSRH
Sbjct: 137 KKTLTGYDAGATKAVIPAAREFVYHGSRTQQLSYARPVGEQFRKMSLNFPQPKEETLSRH 196

Query: 128 SLLGPNGLYGHWQPPKSDKLVKYPNNIDLTPIEIPSLRQPSESSIKIKTDSSNVEPEKSS 187
           S+LGPNGL G WQPPKSDK V YP+NIDL+P+EIP      E+ + +K DSS+ E E  S
Sbjct: 197 SILGPNGLQGQWQPPKSDKGVWYPSNIDLSPVEIPRFDSSLENGLALKLDSSSSELETLS 256

Query: 188 VQSISTPNDEIEIHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQV 247
            QS+ T ND  +  R EE   MISFET+E P   D+IRQPSPP VL EVQDLI AMSPQ 
Sbjct: 257 SQSVLTVNDNSQTSRVEELSPMISFETTETPVQTDLIRQPSPPAVLAEVQDLIPAMSPQA 316

Query: 248 TETECQVGNSLSDAFDRSE-PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRK 306
           TE E ++  S  D   RSE PLQLHISTTMM+NFMKLAK+NTD+NLETCG+LAGSLKNRK
Sbjct: 317 TEAENKMDISSPDDIVRSESPLQLHISTTMMENFMKLAKANTDRNLETCGVLAGSLKNRK 376

Query: 307 FYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHY 366
           FY+TALIIPKQESTSDSCQ TNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHY
Sbjct: 377 FYVTALIIPKQESTSDSCQTTNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHY 436

Query: 367 SYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKP 426
           SYQIMLPESVAIVMAP+D +R HGIFRLT+PGGMSVIR CQQRGFHPHD PPDGGPIYK 
Sbjct: 437 SYQIMLPESVAIVMAPRDTSRTHGIFRLTTPGGMSVIRNCQQRGFHPHDQPPDGGPIYKT 496

Query: 427 CTDVYMNPNLKFDVIDLR 444
           CTDVYMNPNLKFDVIDLR
Sbjct: 497 CTDVYMNPNLKFDVIDLR 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356513064|ref|XP_003525234.1| PREDICTED: AMSH-like ubiquitin thiolesterase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449516695|ref|XP_004165382.1| PREDICTED: AMSH-like ubiquitin thioesterase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439413|ref|XP_004137480.1| PREDICTED: AMSH-like ubiquitin thioesterase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455974|ref|XP_002278560.1| PREDICTED: AMSH-like ubiquitin thiolesterase 1 [Vitis vinifera] gi|297734223|emb|CBI15470.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133090|ref|XP_002321479.1| predicted protein [Populus trichocarpa] gi|222868475|gb|EEF05606.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531196|ref|XP_003534164.1| PREDICTED: AMSH-like ubiquitin thiolesterase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357500307|ref|XP_003620442.1| STAM-binding protein [Medicago truncatula] gi|355495457|gb|AES76660.1| STAM-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356520605|ref|XP_003528952.1| PREDICTED: AMSH-like ubiquitin thiolesterase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356524439|ref|XP_003530836.1| PREDICTED: AMSH-like ubiquitin thiolesterase 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2008184507 AMSH1 "AT1G48790" [Arabidopsis 0.950 0.832 0.626 2.8e-137
TAIR|locus:504955440507 AMSH3 "associated molecule wit 0.941 0.824 0.454 1e-91
TAIR|locus:2019903223 AMSH2 "AT1G10600" [Arabidopsis 0.486 0.968 0.474 1.8e-55
POMBASE|SPAC19B12.10435 sst2 "human AMSH/STAMBP protei 0.662 0.675 0.369 7.7e-48
DICTYBASE|DDB_G0284037715 DDB_G0284037 "MPN/PAD-1 domain 0.382 0.237 0.453 1.9e-42
ASPGD|ASPL0000038640544 AN3003 [Emericella nidulans (t 0.662 0.540 0.348 1.6e-40
UNIPROTKB|G4N2G6563 MGG_13915 "STAM-binding protei 0.635 0.500 0.335 7.7e-40
UNIPROTKB|Q96FJ0436 STAMBPL1 "AMSH-like protease" 0.355 0.362 0.472 5.7e-38
UNIPROTKB|Q17QR2423 STAMBP "STAM binding protein" 0.425 0.446 0.437 1e-36
UNIPROTKB|F1SLF9424 STAMBP "Uncharacterized protei 0.427 0.448 0.427 1.7e-36
TAIR|locus:2008184 AMSH1 "AT1G48790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
 Identities = 267/426 (62%), Positives = 319/426 (74%)

Query:    20 IKLLNALSELEELQPAVQQKINELNRKKTNQVTGWSHASQNSTLEWPSLKKQTLTNYDVT 79
             ++LL+ L+ELE+L+P VQQ+I+EL  K   +    +H + N +L W S  K +  +YD  
Sbjct:    85 MRLLDVLTELEKLKPVVQQRIDELYPKLKPRYNVQAHPA-NGSLGWSSAVKPSFNSYDHA 143

Query:    80 KALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHW 139
             K    P     Y GS  QQ     P++E+FR+MS+NF RPN ETLS+HS+LGP GL   W
Sbjct:   144 KVRNPPGHNSGYMGSRGQQFLNAAPLEERFRKMSVNF-RPNEETLSKHSILGPGGLSAQW 202

Query:   140 QPPKSDKLVKYPNNIDLTPIEIPSLRQPSESSIKIKTDSSNVEPEKSSVQSISTPNDEIE 199
             QPPK D  V+YP+NID +P+ IPS +Q  +S   I T+ SN EPEK  V+     N++I+
Sbjct:   203 QPPKYDTKVQYPSNIDFSPVVIPSFQQLVDSKPMI-TNGSNDEPEKPIVEPSVASNEKIQ 261

Query:   200 IHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLS 259
              + TEE  SMISFE  E+ N  ++IRQPSPPPVL EVQDL+ A+ P+V E EC + NSL 
Sbjct:   262 KNYTEELSSMISFEEPESVNENNLIRQPSPPPVLAEVQDLVPALCPEVREPECMIENSLP 321

Query:   260 DAFDRSE-PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQE 318
             D   RSE PL+LHI+T+MMD FM+LAKSNT KNLETCGILAGSLKNRKFYITALIIPKQE
Sbjct:   322 DESLRSESPLELHIATSMMDTFMRLAKSNTKKNLETCGILAGSLKNRKFYITALIIPKQE 381

Query:   319 STSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAI 378
             STSDSCQATNEEEIFEVQDK+SLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPE+VAI
Sbjct:   382 STSDSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAI 441

Query:   379 VMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFXXXXXXXXXXXIYKPCTDVYMNPNLKF 438
             VMAPQD++R HGIFRLT+PGGM+VIR C +RGF           IY  C +VYMNPNLKF
Sbjct:   442 VMAPQDSSRNHGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKF 501

Query:   439 DVIDLR 444
             DVIDLR
Sbjct:   502 DVIDLR 507
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:504955440 AMSH3 "associated molecule with the SH3 domain of STAM 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019903 AMSH2 "AT1G10600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC19B12.10 sst2 "human AMSH/STAMBP protein homolog, ubiquitin specific-protease" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284037 DDB_G0284037 "MPN/PAD-1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000038640 AN3003 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4N2G6 MGG_13915 "STAM-binding protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q96FJ0 STAMBPL1 "AMSH-like protease" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QR2 STAMBP "STAM binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLF9 STAMBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYB5AMSH1_ARATH3, ., 4, ., 1, 9, ., -0.64310.95040.8323yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.691
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
cd08066173 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family 1e-105
cd08058119 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) 3e-30
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 1e-22
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 7e-21
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 2e-17
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 6e-11
pfam1446498 pfam14464, Prok-JAB, Prokaryotic homologs of the J 0.001
cd08067187 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histo 0.002
cd08068244 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC3 0.003
>gnl|CDD|163697 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family Back     alignment and domain information 
 Score =  310 bits (796), Expect = e-105
 Identities = 99/176 (56%), Positives = 125/176 (71%), Gaps = 5/176 (2%)

Query: 269 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATN 328
           Q+ +   +MD F++LA+ NT +NLETCGIL G L N  F+IT LIIPKQ  TSDSCQ TN
Sbjct: 3   QVVVPADLMDKFLQLAEPNTSRNLETCGILCGKLSNNAFFITHLIIPKQSGTSDSCQTTN 62

Query: 329 EEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRK 388
           EEE+F+ QD+  L  LGWIHTHPTQ+CF+SS+D+HTH SYQ+MLPE++AIV AP+    +
Sbjct: 63  EEELFDFQDQHDLITLGWIHTHPTQTCFLSSVDLHTHCSYQLMLPEAIAIVCAPKY--NE 120

Query: 389 HGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR 444
            GIFRLT P G+  I  C++ GFHPH   P   P+Y+ C  V     LK  V+DLR
Sbjct: 121 FGIFRLTDPPGLDEILNCKKTGFHPHPKDP---PLYEDCGHVIWKDQLKVTVVDLR 173

AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, all of which are components of ESCRT-III, suggested to be required for EGFR down-regulation. The function of AMSH-LP has not been elucidated; however, it exhibits two fundamentally distinct features from AMSH: first, there is a substitution in the critical amino acid residue in the SH3-binding motif (SBM) in the human AMSH-LP, but not in its mouse ortholog, and lacks STAM-binding ability; second, AMSH-LP lacks the ability to interact with CHMP proteins. It is therefore likely that AMSH and AMSH-LP play different roles on early endosomes. Length = 173
>gnl|CDD|163689 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>gnl|CDD|222766 pfam14464, Prok-JAB, Prokaryotic homologs of the JAB domain Back     alignment and domain information
>gnl|CDD|163698 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>gnl|CDD|163699 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
KOG2880424 consensus SMAD6 interacting protein AMSH, contains 100.0
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 100.0
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 99.94
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 99.94
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.94
KOG1554 347 consensus COP9 signalosome, subunit CSN5 [Posttran 99.93
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 99.93
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 99.86
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 99.86
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.85
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 99.85
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 99.84
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 99.82
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 99.74
KOG1560 339 consensus Translation initiation factor 3, subunit 99.73
KOG1555316 consensus 26S proteasome regulatory complex, subun 99.71
cd08073108 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains 99.67
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 99.58
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 99.54
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 99.52
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 99.36
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 99.35
cd08059101 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains 99.29
TIGR03735192 PRTRC_A PRTRC system protein A. A novel genetic sy 99.25
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 99.21
cd08061274 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l 98.95
PLN03246 303 26S proteasome regulatory subunit; Provisional 98.89
TIGR02256131 ICE_VC0181 integrative and conjugative element pro 98.88
cd08063 288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 98.87
KOG17952321 consensus U5 snRNP spliceosome subunit [RNA proces 98.26
KOG1556 309 consensus 26S proteasome regulatory complex, subun 98.24
PF05021 306 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge 98.21
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 97.63
COG51782365 PRP8 U5 snRNP spliceosome subunit [RNA processing 97.31
KOG2975288 consensus Translation initiation factor 3, subunit 97.29
KOG2834 510 consensus Nuclear pore complex, rNpl4 component (s 96.12
KOG3289199 consensus Uncharacterized conserved protein encode 94.79
cd08071113 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 93.51
KOG3050 299 consensus COP9 signalosome, subunit CSN6 [Posttran 90.81
PF04002123 RadC: RadC-like JAB domain; InterPro: IPR001405 Th 89.56
TIGR00608218 radc DNA repair protein radc. This family is based 82.94
PRK00024224 hypothetical protein; Reviewed 82.56
PF14220123 DUF4329: Domain of unknown function (DUF4329) 80.58
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-61  Score=478.83  Aligned_cols=364  Identities=42%  Similarity=0.670  Sum_probs=308.3

Q ss_pred             ccccccccCcchHHHHHHHHHH-----------------HHHHhh----hhCHHHHHHHHHhhccccccccCccccCCCC
Q 013388            3 SRLSSIVQEPKTLFEKGIKLLN-----------------ALSELE----ELQPAVQQKINELNRKKTNQVTGWSHASQNS   61 (444)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~-----------------~~~ele----~lkp~~~~~~~~~n~~~~~~~~~~~~~~~~~   61 (444)
                      .|+||||.||+|+-..+.-++.                 +..|++    +||++++.+|+||-.+...+.|-..      
T Consensus        39 ~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~ey------  112 (424)
T KOG2880|consen   39 LRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEY------  112 (424)
T ss_pred             HHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHH------
Confidence            5899999999986544332222                 444554    7899999999999887766554432      


Q ss_pred             CCCCCccccccCCcccccccccCCCccceecCCcccccccCcchHHHhhcccccCCCCCcccccccccccCCCCCCCCCC
Q 013388           62 TLEWPSLKKQTLTNYDVTKALRLPSRELAYQGSIPQQLAYTRPVDEQFRRMSLNFPRPNAETLSRHSLLGPNGLYGHWQP  141 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~etlsrhs~lgp~~l~~~w~~  141 (444)
                                  +.|+.-|-                     +-.++.||+|..   .+.+||++.|++            
T Consensus       113 ------------n~y~~~K~---------------------k~~~E~~k~le~---~~~~E~e~kr~a------------  144 (424)
T KOG2880|consen  113 ------------NEYDHSKK---------------------KNLAERFKKLEV---QREEETERKRSA------------  144 (424)
T ss_pred             ------------HHHHHHHh---------------------hhHHHHHHHhhc---chhhHHHHHHHH------------
Confidence                        23333221                     116788999988   899999999988            


Q ss_pred             CCCCccccccCCCCCCcccCCCCCCCCCcccCCCCCCCCCCCCcccccccccCCCCccccCCcCCCCCCcccccCCCCcc
Q 013388          142 PKSDKLVKYPNNIDLTPIEIPSLRQPSESSIKIKTDSSNVEPEKSSVQSISTPNDEIEIHRTEEPCSMISFETSEAPNSA  221 (444)
Q Consensus       142 ~~~~~~~~yps~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (444)
                         ..++||+++.++.+.+.++++|....+.+... .+.+.++.....+++-....+.....++....++++..++....
T Consensus       145 ---q~k~Q~l~~~~f~~~~~~~~~q~~~s~~m~s~-~~~gl~e~~~~~~~~p~~~~~~~~~s~~l~~~~s~ep~~s~~~n  220 (424)
T KOG2880|consen  145 ---QTKQQQLESSQFSPLEPPSFKQLLDSGPMPSN-QSNGLPEQPIGEPLVPSNESRSLNYSELLSVLSSPEPSDSCTTN  220 (424)
T ss_pred             ---HHhhhcCCcccCCccCchHHHhhhcccCCCcC-CCCCCcCCCcCCCCcccccccccCCchhhhhccCCCcccccccc
Confidence               78999999999999999999999998887643 34455556777777766777788888888788888999999999


Q ss_pred             cccccCCCCcceeeeccccccCCCCccCCcCCCCCCCCCCCCCCC-CeEEEECHHHHHHHHHHHhccCCCCcceEEEeee
Q 013388          222 DVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSE-PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAG  300 (444)
Q Consensus       222 ~~~~~~~p~p~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG  300 (444)
                      ..+++|+++++|+.+-          .+      .+..+....+. ++.|+|+..++..|++.|++||.++.|+||+|+|
T Consensus       221 ~~~k~p~~~r~l~p~a----------~~------n~~~~~~~~~k~lr~v~ip~~l~~~Fl~la~~NT~knlETCGiL~g  284 (424)
T KOG2880|consen  221 VTIKSPSVDRVLKPGA----------TD------NSNHGESSEGKILRDVHIPERLMEVFLQLAKSNTKKNLETCGILAG  284 (424)
T ss_pred             ccccCCCCCccccccc----------cc------ccccccccCCccceEEEecHHHHHHHHHHHhhcccccchHHHHhhh
Confidence            9999999999988761          11      11111112222 8999999999999999999999999999999999


Q ss_pred             eeCCCEEEEEEEEecCCCCCCCceecCChHHHHHHHhhCCCccEEEEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEE
Q 013388          301 SLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVM  380 (444)
Q Consensus       301 ~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe~q~~rgLeiVGWYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIi  380 (444)
                      +...+.++||++++|+|++++++|.+++++++|.+|+.++|..+||+||||+++||+|++|||||++||.|+|+++||||
T Consensus       285 ~L~~n~f~IThliiPkQeatsd~C~t~neeelF~vQdq~~L~tlGWIHTHPTQt~FmSSVDlHTHcSYQiMlPEAiAIV~  364 (424)
T KOG2880|consen  285 KLERNEFYITHLIIPKQEATSDSCNTMNEEELFEVQDQHELLTLGWIHTHPTQTCFMSSVDLHTHCSYQIMLPEAIAIVC  364 (424)
T ss_pred             HhhcCcEEEEEEEeecccCCCccccccCHHHHheecccccceeeeeeecCCccchhheeccccccceeeeecchheeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCceeEEEecCCCCchhhhhcccCCCcCCCCCCCCCCCccccCceEecCCCceEEeeCC
Q 013388          381 APQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR  444 (444)
Q Consensus       381 SP~~s~~~LrAFRLtdP~Gm~~ik~C~~~gFhPh~~~~~g~~iy~~~~hv~~~~~~~~~~~dlr  444 (444)
                      +|+..  ..|+|||++|+||.++..|+++|||||..  +|+|+|++|+||||+.+.+++|+|||
T Consensus       365 aPk~~--~tGiFrLt~~~Gm~~i~~C~~~GFHpH~~--~~~pl~~~~~~v~~~~~~k~~v~dLR  424 (424)
T KOG2880|consen  365 APKSK--TTGIFRLTDPGGMEVIRGCRKKGFHPHSE--KGPPLFEHCSHVYMHHNNKLCVIDLR  424 (424)
T ss_pred             ccccC--CcceEEecCCcchHHHhhcccCCCCCCCC--CCCCceeecceeEEcCCcceeeeeCC
Confidence            99854  59999999999999999999999999975  79999999999999999999999998

>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic Back     alignment and domain information
>TIGR03735 PRTRC_A PRTRC system protein A Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>KOG1795 consensus U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG2975 consensus Translation initiation factor 3, subunit f (eIF-3f) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2834 consensus Nuclear pore complex, rNpl4 component (sc Npl4) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3289 consensus Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene [General function prediction only] Back     alignment and domain information
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family Back     alignment and domain information
>KOG3050 consensus COP9 signalosome, subunit CSN6 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions [] Back     alignment and domain information
>TIGR00608 radc DNA repair protein radc Back     alignment and domain information
>PRK00024 hypothetical protein; Reviewed Back     alignment and domain information
>PF14220 DUF4329: Domain of unknown function (DUF4329) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
2znr_A178 Crystal Structure Of The Dub Domain Of Human Amsh-L 3e-38
2znv_A178 Crystal Structure Of Human Amsh-Lp Dub Domain In Co 1e-37
3rzu_A187 The Crystal Structure Of The Catalytic Domain Of Am 2e-37
3rzv_A211 The Crystal Structure Of A E280a Mutant Of The Cata 6e-37
4b4t_V306 Near-Atomic Resolution Structural Model Of The Yeas 1e-06
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp Length = 178 Back     alignment and structure 
Iteration: 1

 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 111/169 (65%), Gaps = 7/169 (4%)
Query: 276 MMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEV 335
           +   F++LA+SNT + +ETCGIL G L + +F IT +I+PKQ +  D C   N EE+F V
Sbjct: 17  LCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNV 76
Query: 336 QDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLT 395
           QD+  L  LGWIHTHPTQ+ F+SS+D+HTH SYQ+MLPE++AIV +P+   +  GIFRLT
Sbjct: 77  QDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKH--KDTGIFRLT 134
Query: 396 SPGGMSVIRQCQQRGFXXXXXXXXXXXIYKPCTDVYMNPNLKFDVIDLR 444
           +  GM  +  C+++GF           ++  C  V +  ++K  V+DLR
Sbjct: 135 N-AGMLEVSACKKKGF---HPHTKEPRLFSICKHVLVK-DIKIIVLDLR 178
>pdb|2ZNV|A Chain A, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 178 Back     alignment and structure
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh Length = 187 Back     alignment and structure
>pdb|3RZV|A Chain A, The Crystal Structure Of A E280a Mutant Of The Catalytic Domain Of Amsh Length = 211 Back     alignment and structure
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 2e-67
2znr_A178 AMSH-like protease; metal binding protein, alterna 1e-60
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 5e-27
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 2e-25
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 4e-23
2kks_A146 Uncharacterized protein; NESG, structural genomics 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 1e-04
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 3e-04
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
 Score =  213 bits (543), Expect = 2e-67
 Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 20/228 (8%)

Query: 217 APNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTM 276
             +      +P+ PPV+          S +             D         + +   +
Sbjct: 4   GSSDCHTTVRPAKPPVVDR--------SLKPGALSNSESIPTIDGLR-----HVVVPGRL 50

Query: 277 MDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQ 336
              F++LA +NT + + TCGIL G L   +F IT ++IPKQ + SD C   NEEE+F +Q
Sbjct: 51  CPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQ 110

Query: 337 DKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTS 396
           D++ L  LGWIHTHPTQ+ F+SS+D+HTH SYQ+MLPESVAIV +P+   ++ G F+LT 
Sbjct: 111 DQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF--QETGFFKLT- 167

Query: 397 PGGMSVIRQCQQRGFHPHDPPPDGGPIYKPCTDVYMNPNLKFDVIDLR 444
             G+  I  C+Q+GFHPH       P++  C+ V +       + DLR
Sbjct: 168 DHGLEEISSCRQKGFHPH---SKDPPLFCSCSHVTVVD-RAVTITDLR 211
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Length = 273 Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Length = 565 Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Length = 146 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Length = 153 Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
2znr_A178 AMSH-like protease; metal binding protein, alterna 100.0
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 100.0
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 99.95
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 99.92
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 99.9
2kks_A146 Uncharacterized protein; NESG, structural genomics 99.89
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 99.89
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 99.78
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 99.77
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 99.69
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 99.6
4b4t_U 338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 99.05
2qlc_A126 DNA repair protein RADC homolog; MCSG, structural 93.45
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
Probab=100.00  E-value=3.8e-46  Score=344.05  Aligned_cols=172  Identities=46%  Similarity=0.850  Sum_probs=161.9

Q ss_pred             CCeEEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHHHHHHhhCCCccEE
Q 013388          266 EPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLG  345 (444)
Q Consensus       266 ~~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe~q~~rgLeiVG  345 (444)
                      .+++|.|+++++++|++||+.++.++.|+||+|+|+..++.+.|+++|+++|.+++++|++.++++++++++++++++||
T Consensus         7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vG   86 (178)
T 2znr_A            7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLG   86 (178)
T ss_dssp             SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEE
T ss_pred             CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEE
Confidence            37889999999999999999976445899999999998889999999999999999999999988999999999999999


Q ss_pred             EEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCCCceeEEEecCCCCchhhhhcccCCCcCCCCCCCCCCCcc
Q 013388          346 WIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYK  425 (444)
Q Consensus       346 WYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~~~LrAFRLtdP~Gm~~ik~C~~~gFhPh~~~~~g~~iy~  425 (444)
                      ||||||.++|+||.+|+++|++||+++|+++||||||..+  .++||||++ +||+++++|+++|||||.   +++++|+
T Consensus        87 wyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--~~~afrl~~-~g~~~~~~~~~~~f~p~~---~~~~~~~  160 (178)
T 2znr_A           87 WIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--DTGIFRLTN-AGMLEVSACKKKGFHPHT---KEPRLFS  160 (178)
T ss_dssp             EEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--EEEEEEECH-HHHHHHHHCCCCSSCCCC---CSSCSEE
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--cceEEEEEC-CcEeeecccCCCCcccCC---CCCCceE
Confidence            9999999999999999999999999999999999999985  499999995 899999999999999997   3689999


Q ss_pred             ccCceEecCCCceEEeeCC
Q 013388          426 PCTDVYMNPNLKFDVIDLR  444 (444)
Q Consensus       426 ~~~hv~~~~~~~~~~~dlr  444 (444)
                      +|+||++++++ |+|+|||
T Consensus       161 ~~~~~~~~~~~-~~~~~~r  178 (178)
T 2znr_A          161 ICKHVLVKDIK-IIVLDLR  178 (178)
T ss_dssp             ECSSEEEECCC-CEEEECC
T ss_pred             EeceEEEeCCe-eEEEecC
Confidence            99999999999 9999999
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 444
d1oi0a_121 c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeo 2e-09
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 18/116 (15%)

Query: 270 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNE 329
           + IS  ++   ++ AKS      E   +L+G     K  +  LI     S S S      
Sbjct: 4   MKISRGLLKTILEAAKSAHPD--EFIALLSG----SKDVMDELIFLPFVSGSVS------ 51

Query: 330 EEIFEV-QDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQD 384
             +  +      +   G +H+HP+ SC  S  D+           +   IV  P D
Sbjct: 52  -AVIHLDMLPIGMKVFGTVHSHPSPSCRPSEEDLSLFT----RFGKYHIIVCYPYD 102

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 99.77
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=6.2e-19  Score=151.40  Aligned_cols=109  Identities=21%  Similarity=0.223  Sum_probs=83.9

Q ss_pred             EEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHHHH-HHhhCCCccEEEE
Q 013388          269 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFE-VQDKRSLFPLGWI  347 (444)
Q Consensus       269 ~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe-~q~~rgLeiVGWY  347 (444)
                      .|.|+++++..|++||++.+  |.|+||+|+|+.+    .|+.++++++...+...       .|. .+...++.++|||
T Consensus         3 ~l~I~~~~l~~i~~hA~~~~--P~E~cGlL~G~~~----~i~~~~~~~n~~~~~~~-------~~~~~~~~~~~~ivgi~   69 (121)
T d1oi0a_           3 SMKISRGLLKTILEAAKSAH--PDEFIALLSGSKD----VMDELIFLPFVSGSVSA-------VIHLDMLPIGMKVFGTV   69 (121)
T ss_dssp             SCEECHHHHHHHHHHHHHHT--TSCCEEEEEESTT----EECEEEECCCCC--------------------CCCEEEEEE
T ss_pred             eEEECHHHHHHHHHHHHhcC--CceeEEEEEecCC----cEEEEEEcCCCCCCccc-------ccccchhhcCCeEEEEE
Confidence            47899999999999999966  9999999999754    57788888886433321       122 2467899999999


Q ss_pred             eCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCCCceeEEEec
Q 013388          348 HTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLT  395 (444)
Q Consensus       348 HSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~~~LrAFRLt  395 (444)
                      ||||+.+++||..|+.++     ..++.++||++.-.....+++|+..
T Consensus        70 HSHP~~~a~PS~~D~~~~-----~~~g~~~~Ivs~p~~~~~~~~~~~~  112 (121)
T d1oi0a_          70 HSHPSPSCRPSEEDLSLF-----TRFGKYHIIVCYPYDENSWKCYNRK  112 (121)
T ss_dssp             EEESSSCCSCCHHHHHHH-----HHSCSEEEEEETTCCTTCEEEEETT
T ss_pred             EecCCCCCCcCHHHHHhh-----hccCCEEEEEeCCCCCCCEEEEeCC
Confidence            999999999999999864     3478899999987666679999743