Citrus Sinensis ID: 013397

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVVD
ccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEccccccEEEEEcccccccccccccEEEEEEccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEccEEEEEEEccEEEEEEccccccccccEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHcccccc
ccHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccHHcccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccHHcccccEEEEEccccccccEEEEEEcccHHHcEEEEEEEcccccccccccEEEEEcccccccccccccEEEEccccHcccccccHccccccccccccccccHHHHHHHcccccccHHHHHccccccccccccccccccccEEEEEEEEcccEEEEEEcccEEEcccccccccHHHccEEEEEccEEEEEEEHcccccccccHHHHcHHHHHcccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHccc
MKKWYGGVLIASLFMLLLLRYGfmknpigesYLTSLissnasnplewthtaaapgvqdpenssqvisiDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKlgytnrssvrkakekqcphflnkmnttdldrssfklqvpcgltqgssitiigipngllgnfridltgeplpgepdppivlHYNVRLlgdkitenpviVQNTWTlahdwgeevrcpspspekiikvdELDQcnklvgnddkrlptvstrlnnsrtsktkrffpfkqghLFVATIRvgsegiqttvdgkhitsFAYRETLEPWLVNEVRISGDLKLISVLAsglptsedsehttdlealrsyplslhkpvdLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVVD
MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKlgytnrssvrkakekqcpHFLNkmnttdldrsSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKlvgnddkrlptvstrlnnsrtsktkrffpfkqgHLFVATIRVgsegiqttvdgkHITSFAYRETLEPWLVNEVRISGDLKLISVLASGlptsedsehTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVVD
MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVVD
***WYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISS*****LEWT****************VISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMAS************************FLN***TTDLDRSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRC*******IIKVDELDQCNKLV**********************KRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASG*************EALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDR****
***WYGGVLIASLFMLLLLRYGFM*******************************************************************WNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMAS**************************************FKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEP****PDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEV***********KVDELDQCNKLV**********************KRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTT*****R***LSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVVD
MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGL**********DLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVVD
*KKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLI****SNPL***H****PGVQDP***SQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLG*************QCPHFLNKMNTTDLDRSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVV*
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iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLLLWYTIIMWDRSVVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
Q8L7F9 643 Beta-1,3-galactosyltransf yes no 0.945 0.653 0.589 1e-149
Q9ASW1 619 Probable beta-1,3-galacto no no 0.867 0.621 0.367 1e-66
Q8RX55 672 Probable beta-1,3-galacto no no 0.693 0.458 0.342 6e-40
Q8GXG6 673 Probable beta-1,3-galacto no no 0.635 0.419 0.325 3e-35
A7XDQ9 684 Probable beta-1,3-galacto no no 0.614 0.399 0.326 3e-35
Q9LV16 681 Probable beta-1,3-galacto no no 0.707 0.461 0.336 3e-34
>sp|Q8L7F9|B3GTF_ARATH Beta-1,3-galactosyltransferase 15 OS=Arabidopsis thaliana GN=B3GALT15 PE=2 SV=1 Back     alignment and function desciption
 Score =  529 bits (1363), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/434 (58%), Positives = 334/434 (76%), Gaps = 14/434 (3%)

Query: 1   MKKWYGGVLIASLFMLL-LLRYGFMKNPIGESYLTS----LISSNASNPLEWTHTAAAPG 55
           MK++YGG+L+ S+ M L + RY  +  P+ + Y+T+    +++ N + P+EW        
Sbjct: 1   MKRFYGGLLVVSMCMFLTVYRYVDLNTPVEKPYITAAASVVVTPNTTLPMEWLRITLPDF 60

Query: 56  VQDPENSSQVISID--AITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIK 113
           +++  N+ + IS D  A+  GLF ++N+SKEE++ LLTWN L+ L++++Q L NGV+AIK
Sbjct: 61  MKEARNTQEAISGDDIAVVSGLFVEQNVSKEEREPLLTWNRLESLVDNAQSLVNGVDAIK 120

Query: 114 EAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLT 173
           EAG  W +L+++VE +KL   N +  RK KE+ CP FL+KMN T+ D SS KLQ+PCGLT
Sbjct: 121 EAGIVWESLVSAVEAKKLVDVNENQTRKGKEELCPQFLSKMNATEADGSSLKLQIPCGLT 180

Query: 174 QGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWT 233
           QGSSIT+IGIP+GL+G+FRIDLTG+PLPGEPDPPI++HYNVRLLGDK TE+PVIVQN+WT
Sbjct: 181 QGSSITVIGIPDGLVGSFRIDLTGQPLPGEPDPPIIVHYNVRLLGDKSTEDPVIVQNSWT 240

Query: 234 LAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSR-------TSK 286
            + DWG E RCP   P+   KVD+LD+CNK+VG +  R  + S + N SR        SK
Sbjct: 241 ASQDWGAEERCPKFDPDMNKKVDDLDECNKMVGGEINRTSSTSLQSNTSRGVPVAREASK 300

Query: 287 TKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLIS 346
            +++FPFKQG L VAT+RVG+EG+Q TVDGKHITSFA+R+TLEPWLV+E+RI+GD +LIS
Sbjct: 301 HEKYFPFKQGFLSVATLRVGTEGMQMTVDGKHITSFAFRDTLEPWLVSEIRITGDFRLIS 360

Query: 347 VLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTE 406
           +LASGLPTSE+SEH  DLEAL+S  LS  +P+DL IGVFSTANNFKRRMAVRRTWMQY +
Sbjct: 361 ILASGLPTSEESEHVVDLEALKSPTLSPLRPLDLVIGVFSTANNFKRRMAVRRTWMQYDD 420

Query: 407 VRSGTVAVRFFVGL 420
           VRSG VAVRFFVGL
Sbjct: 421 VRSGRVAVRFFVGL 434
Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue. Involved in the biosynthesis of N-glycans containing Lewis a structures (with the combination of FUT13).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9ASW1|B3GTG_ARATH Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1 Back     alignment and function description
>sp|Q8RX55|B3GTI_ARATH Probable beta-1,3-galactosyltransferase 18 OS=Arabidopsis thaliana GN=B3GALT18 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXG6|B3GTH_ARATH Probable beta-1,3-galactosyltransferase 17 OS=Arabidopsis thaliana GN=B3GALT17 PE=2 SV=2 Back     alignment and function description
>sp|A7XDQ9|B3GTK_ARATH Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1 Back     alignment and function description
>sp|Q9LV16|B3GTJ_ARATH Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
224112259 632 predicted protein [Populus trichocarpa] 0.943 0.662 0.757 0.0
225425664 636 PREDICTED: beta-1,3-galactosyltransferas 0.945 0.660 0.749 0.0
224098882 647 predicted protein [Populus trichocarpa] 0.941 0.646 0.757 0.0
255562878 631 transferase, transferring glycosyl group 0.939 0.660 0.724 1e-179
357487041 639 Beta-1,3-galactosyltransferase [Medicago 0.941 0.654 0.693 1e-172
356499817 639 PREDICTED: beta-1,3-galactosyltransferas 0.941 0.654 0.698 1e-170
296082924 635 unnamed protein product [Vitis vinifera] 0.943 0.659 0.674 1e-163
225452833 639 PREDICTED: beta-1,3-galactosyltransferas 0.943 0.655 0.672 1e-161
356498304 613 PREDICTED: beta-1,3-galactosyltransferas 0.889 0.644 0.683 1e-158
449434780 630 PREDICTED: beta-1,3-galactosyltransferas 0.936 0.660 0.639 1e-153
>gi|224112259|ref|XP_002316134.1| predicted protein [Populus trichocarpa] gi|222865174|gb|EEF02305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/424 (75%), Positives = 356/424 (83%), Gaps = 5/424 (1%)

Query: 1   MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPE 60
           MKKWYGGVL+ASLFMLL+LRYG +KNPIG + L +  SSNAS PLEW H A  P VQ+PE
Sbjct: 1   MKKWYGGVLVASLFMLLILRYGLLKNPIGGNILLN-PSSNASKPLEWVHPAVPPAVQNPE 59

Query: 61  NSSQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWN 120
            SSQV S D I   LFA RNIS EE +SL TWNLLK LI+H+QV +NGVEAIKEAG+AW+
Sbjct: 60  TSSQVFSTDTIVSSLFAPRNISNEEHKSLQTWNLLKHLIDHAQVFANGVEAIKEAGNAWS 119

Query: 121 NLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLTQGSSITI 180
           +LMAS EEE+L YTN SS RK KEKQCPHFLNKMN T+LD S +KL +PCGLTQGSSITI
Sbjct: 120 SLMASAEEERLSYTNESSSRKVKEKQCPHFLNKMNATELDNSGYKLWLPCGLTQGSSITI 179

Query: 181 IGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGE 240
           I IP+GLLGNFRIDLTGE LPGEPDPPI+LHYNVRL GDKITE+PVIVQNTWT+AHDWGE
Sbjct: 180 ISIPDGLLGNFRIDLTGEALPGEPDPPIILHYNVRLHGDKITEDPVIVQNTWTVAHDWGE 239

Query: 241 EVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTV----STRLNNSRTSKTKRFFPFKQG 296
           E RCPSPSPEKI KVDELDQCNK+VG +D R+ ++    S R +    +K +R+FPFKQG
Sbjct: 240 EERCPSPSPEKIKKVDELDQCNKMVGRNDTRVTSMHSDHSRRSSLQEGTKARRYFPFKQG 299

Query: 297 HLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSE 356
            L VAT+RVG EGIQ TVDGKHITSFAYRETLEPWLV+EVRISGDL LISV+ASGLPTSE
Sbjct: 300 QLSVATLRVGMEGIQMTVDGKHITSFAYRETLEPWLVSEVRISGDLNLISVVASGLPTSE 359

Query: 357 DSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRF 416
           DSEH  DLE L+S PLS  K +DLFIGVFSTANNFKRRMAVRRTWMQY  VRSG VAVRF
Sbjct: 360 DSEHAVDLEVLKSAPLSPKKTLDLFIGVFSTANNFKRRMAVRRTWMQYAAVRSGAVAVRF 419

Query: 417 FVGL 420
           FVGL
Sbjct: 420 FVGL 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425664|ref|XP_002269607.1| PREDICTED: beta-1,3-galactosyltransferase 15 [Vitis vinifera] gi|296086360|emb|CBI31949.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224098882|ref|XP_002311304.1| predicted protein [Populus trichocarpa] gi|222851124|gb|EEE88671.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255562878|ref|XP_002522444.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223538329|gb|EEF39936.1| transferase, transferring glycosyl groups, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357487041|ref|XP_003613808.1| Beta-1,3-galactosyltransferase [Medicago truncatula] gi|355515143|gb|AES96766.1| Beta-1,3-galactosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356499817|ref|XP_003518733.1| PREDICTED: beta-1,3-galactosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|296082924|emb|CBI22225.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452833|ref|XP_002283624.1| PREDICTED: beta-1,3-galactosyltransferase 15-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356498304|ref|XP_003517993.1| PREDICTED: beta-1,3-galactosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|449434780|ref|XP_004135174.1| PREDICTED: beta-1,3-galactosyltransferase 15-like [Cucumis sativus] gi|449478400|ref|XP_004155308.1| PREDICTED: beta-1,3-galactosyltransferase 15-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2200660 643 GALT1 "galactosyltransferase1" 0.968 0.668 0.581 7.4e-137
TAIR|locus:2081071 619 AT3G06440 [Arabidopsis thalian 0.907 0.651 0.372 3e-62
TAIR|locus:2027290 672 AT1G74800 [Arabidopsis thalian 0.686 0.453 0.356 4.2e-39
TAIR|locus:2133094 741 GALT2 "AGP galactosyltransfera 0.511 0.306 0.343 1.4e-32
TAIR|locus:2172219 681 AT5G62620 [Arabidopsis thalian 0.524 0.342 0.380 1.6e-29
TAIR|locus:2205774 673 AT1G27120 [Arabidopsis thalian 0.531 0.350 0.346 4.5e-25
RGD|3003324 Lgals4 "lectin, galactoside-bi 0.191 0.262 0.285 0.00044
UNIPROTKB|P38552324 Lgals4 "Galectin-4" [Rattus no 0.191 0.262 0.285 0.00044
TAIR|locus:2200660 GALT1 "galactosyltransferase1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
 Identities = 260/447 (58%), Positives = 339/447 (75%)

Query:     1 MKKWYGGVLIASLFMLLLL-RYGFMKNPIGESYLTS----LISSNASNPLEWTHTAAAPG 55
             MK++YGG+L+ S+ M L + RY  +  P+ + Y+T+    +++ N + P+EW        
Sbjct:     1 MKRFYGGLLVVSMCMFLTVYRYVDLNTPVEKPYITAAASVVVTPNTTLPMEWLRITLPDF 60

Query:    56 VQDPENSSQVISID--AITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIK 113
             +++  N+ + IS D  A+  GLF ++N+SKEE++ LLTWN L+ L++++Q L NGV+AIK
Sbjct:    61 MKEARNTQEAISGDDIAVVSGLFVEQNVSKEEREPLLTWNRLESLVDNAQSLVNGVDAIK 120

Query:   114 EAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLT 173
             EAG  W +L+++VE +KL   N +  RK KE+ CP FL+KMN T+ D SS KLQ+PCGLT
Sbjct:   121 EAGIVWESLVSAVEAKKLVDVNENQTRKGKEELCPQFLSKMNATEADGSSLKLQIPCGLT 180

Query:   174 QGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWT 233
             QGSSIT+IGIP+GL+G+FRIDLTG+PLPGEPDPPI++HYNVRLLGDK TE+PVIVQN+WT
Sbjct:   181 QGSSITVIGIPDGLVGSFRIDLTGQPLPGEPDPPIIVHYNVRLLGDKSTEDPVIVQNSWT 240

Query:   234 LAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSR-------TSK 286
              + DWG E RCP   P+   KVD+LD+CNK+VG +  R  + S + N SR        SK
Sbjct:   241 ASQDWGAEERCPKFDPDMNKKVDDLDECNKMVGGEINRTSSTSLQSNTSRGVPVAREASK 300

Query:   287 TKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLIS 346
              +++FPFKQG L VAT+RVG+EG+Q TVDGKHITSFA+R+TLEPWLV+E+RI+GD +LIS
Sbjct:   301 HEKYFPFKQGFLSVATLRVGTEGMQMTVDGKHITSFAFRDTLEPWLVSEIRITGDFRLIS 360

Query:   347 VLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTE 406
             +LASGLPTSE+SEH  DLEAL+S  LS  +P+DL IGVFSTANNFKRRMAVRRTWMQY +
Sbjct:   361 ILASGLPTSEESEHVVDLEALKSPTLSPLRPLDLVIGVFSTANNFKRRMAVRRTWMQYDD 420

Query:   407 VRSGTVAVRFFVGLVSFTEPYLLL-LW 432
             VRSG VAVRFFVGL     P + L LW
Sbjct:   421 VRSGRVAVRFFVGL--HKSPLVNLELW 445
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0006486 "protein glycosylation" evidence=IEA
GO:0008378 "galactosyltransferase activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0010488 "UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity" evidence=IDA
GO:0010493 "Lewis a epitope biosynthetic process" evidence=IMP
TAIR|locus:2081071 AT3G06440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027290 AT1G74800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133094 GALT2 "AGP galactosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172219 AT5G62620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205774 AT1G27120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|3003 Lgals4 "lectin, galactoside-binding, soluble, 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P38552 Lgals4 "Galectin-4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L7F9B3GTF_ARATH2, ., 4, ., 1, ., -0.58980.94590.6531yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
PLN03133 636 PLN03133, PLN03133, beta-1,3-galactosyltransferase 0.0
pfam00337129 pfam00337, Gal-bind_lectin, Galactoside-binding le 2e-26
cd00070127 cd00070, GLECT, Galectin/galactose-binding lectin 1e-24
smart00908122 smart00908, Gal-bind_lectin, Galactoside-binding l 2e-22
smart00276128 smart00276, GLECT, Galectin 3e-14
>gnl|CDD|215596 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional Back     alignment and domain information 
 Score =  794 bits (2052), Expect = 0.0
 Identities = 337/464 (72%), Positives = 374/464 (80%), Gaps = 29/464 (6%)

Query: 1   MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPE 60
           MKKWYGGVL+ SLFMLL+LRY  +KNPIGESYL S+  SN +NPLEW      P VQ+PE
Sbjct: 1   MKKWYGGVLVVSLFMLLVLRYVLLKNPIGESYLQSVFPSNTTNPLEWLDPTNPPAVQNPE 60

Query: 61  NSSQVISIDAITFGLFAQRNISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWN 120
           NSSQVIS D I   LFA RNIS EEQQSLLTWN LK L++H+QVL NGVEAIKEAG AW 
Sbjct: 61  NSSQVISTDTIVSSLFATRNISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWE 120

Query: 121 NLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLDRSSFKLQVPCGLTQGSSITI 180
           +LMASVEEEKLGYTN SS+RK+KEKQCP+FLNKMN T+L  S +KL++PCGLTQGSSITI
Sbjct: 121 SLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITI 180

Query: 181 IGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGE 240
           IGIP+GLLGNFRIDLTGEPLPGEPDPPI+LHYNVRLLGDKITE+PVIVQNTWT AHDWGE
Sbjct: 181 IGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGE 240

Query: 241 EVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTS-------KTKRFFPF 293
           E RCPSP P+K  KVD+LDQCNK+VG DDKR+ + S   N SR S       K +R+FPF
Sbjct: 241 EERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPF 300

Query: 294 KQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLP 353
           KQG+L VAT+RVG+EGIQ TVDGKHITSFAYRETLEPWLV+EVRISGDLKLISVLASGLP
Sbjct: 301 KQGYLSVATLRVGTEGIQMTVDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLP 360

Query: 354 TSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVA 413
           TSEDSEH  DLEAL+S PLS  KP+DLFIGVFSTANNFKRRMAVRRTWMQY  VRSG VA
Sbjct: 361 TSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVA 420

Query: 414 VRFFVG----------------------LVSFTEPYLLLLWYTI 435
           VRFFVG                      L+ F + Y L+ W T+
Sbjct: 421 VRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTL 464

Length = 636
>gnl|CDD|215865 pfam00337, Gal-bind_lectin, Galactoside-binding lectin Back     alignment and domain information
>gnl|CDD|238025 cd00070, GLECT, Galectin/galactose-binding lectin Back     alignment and domain information
>gnl|CDD|214904 smart00908, Gal-bind_lectin, Galactoside-binding lectin Back     alignment and domain information
>gnl|CDD|214596 smart00276, GLECT, Galectin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
PLN03133 636 beta-1,3-galactosyltransferase; Provisional 100.0
smart00276128 GLECT Galectin. Galectin - galactose-binding lecti 100.0
PF00337133 Gal-bind_lectin: Galactoside-binding lectin; Inter 100.0
cd00070127 GLECT Galectin/galactose-binding lectin. This doma 100.0
KOG3587143 consensus Galectin, galactose-binding lectin [Extr 99.95
KOG2287 349 consensus Galactosyltransferases [Carbohydrate tra 99.52
PLN03193 408 beta-1,3-galactosyltransferase; Provisional 99.04
PTZ00210 382 UDP-GlcNAc-dependent glycosyltransferase; Provisio 98.64
KOG2288 274 consensus Galactosyltransferases [Carbohydrate tra 90.92
>PLN03133 beta-1,3-galactosyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-117  Score=948.73  Aligned_cols=429  Identities=76%  Similarity=1.198  Sum_probs=412.3

Q ss_pred             CccccchHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCcccccCCCCCCCCCCCCcceeeccccccCcccCCC
Q 013397            1 MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRN   80 (444)
Q Consensus         1 m~k~~~~~~i~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~i~~~~~~~~l~~~~n   80 (444)
                      |||||||++|++|||+|+|||.++++|.++++++.++..|+|+||+|++++.++++++|+|++++|+.++++|+||+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (636)
T PLN03133          1 MKKWYGGVLVVSLFMLLVLRYVLLKNPIGESYLQSVFPSNTTNPLEWLDPTNPPAVQNPENSSQVISTDTIVSSLFATRN   80 (636)
T ss_pred             CceeeeeehHHHHHHHHHHHHHHhcCCCCCCCcccccccccCCchhhcccCCCccccCCCccceeeccccchhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhhhhhhhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccccCcccccccccCCCCCC
Q 013397           81 ISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLD  160 (444)
Q Consensus        81 ~s~~~~~~l~~w~~l~~l~~~s~~l~~a~~a~~~~~~aw~~l~~~~~~~~~~~~~~~~~~~~~~~~CP~sv~~~~~~~~~  160 (444)
                      +|+|++|+|++|||||+|++|||+||+|+|||+||+.||++|+++++++++++.++++..+.++.+||++|+.|+++++.
T Consensus        81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~  160 (636)
T PLN03133         81 ISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELG  160 (636)
T ss_pred             CchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999889988888877777889999999999999998


Q ss_pred             CCCeeeeeCCCCCCCcEEEEEEEeCCCCCeEEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEcCcc-CCCCcc
Q 013397          161 RSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWT-LAHDWG  239 (444)
Q Consensus       161 ~~p~~~~LPcGL~~GssItVvG~p~~~a~rF~InL~g~~~~~~~~p~I~LHfNPRf~gd~~s~~pvIV~NT~~-~~g~WG  239 (444)
                      ...|.+.|||||.+|++|||+|+|+.++++|+|||+|+..++++++||+|||||||++||++++|+||||||+ + |+||
T Consensus       161 ~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~-~~WG  239 (636)
T PLN03133        161 DSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAA-HDWG  239 (636)
T ss_pred             CCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCC-Cccc
Confidence            8999999999999999999999999999999999999977777789999999999999998999999999999 6 8999


Q ss_pred             cceecCCCCCCccccccchhhhccccCCCCCCCCcc--cccccc-----ccCCCCccCCCCCCCCeEEEEEEEcCceEEE
Q 013397          240 EEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTV--STRLNN-----SRTSKTKRFFPFKQGHLFVATIRVGSEGIQT  312 (444)
Q Consensus       240 ~EERc~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV  312 (444)
                      .||||++|+|+++++||||++||||+|+|+++++++  .||+||     +++.+..++|||++|++|++||+|+.|||||
T Consensus       240 ~EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v  319 (636)
T PLN03133        240 EEERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQM  319 (636)
T ss_pred             HhhhcCCCCccccccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEE
Confidence            999999999999999999999999999999887665  478886     6778888999999999999999999999999


Q ss_pred             EeCCeeeeeeccCCCCCCCCccEEEEEccEEEEEEEeccCCCCCCCCCCcchhhhhcCCCCCCCcEEEEEeeeeccccch
Q 013397          313 TVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFK  392 (444)
Q Consensus       313 ~VNGkHvtsF~yR~~l~~~~Vt~L~I~GDv~l~SV~a~~lP~s~p~~~~~~~e~~ka~pLpp~~~i~LfiGi~S~~N~F~  392 (444)
                      +|||+|+++|+||++++||.|++|+|+|||+|+||.|.++|++||+++.+|+|.|+|+||+++++++|+|||.|+.+||+
T Consensus       320 ~VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~  399 (636)
T PLN03133        320 TVDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFK  399 (636)
T ss_pred             EECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchhcccchHHhcCCCCCCCCceEEEEEEeCCcccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhhccceeeccCceEEEEeecccCCCccchhh
Q 013397          393 RRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLL  430 (444)
Q Consensus       393 ~RMavRrtwmq~~~v~s~~v~~RFFv~L~~~~e~~~~~  430 (444)
                      +|||||+|||++..++++.|.+|||+|++..++++.+|
T Consensus       400 rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L  437 (636)
T PLN03133        400 RRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEEL  437 (636)
T ss_pred             HHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHH
Confidence            99999999999999999999999999999888777655

>smart00276 GLECT Galectin Back     alignment and domain information
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements Back     alignment and domain information
>cd00070 GLECT Galectin/galactose-binding lectin Back     alignment and domain information
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures] Back     alignment and domain information
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03193 beta-1,3-galactosyltransferase; Provisional Back     alignment and domain information
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional Back     alignment and domain information
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
2yro_A155 Galectin-8; GAL-BIND lectin, sugar binding, struct 3e-28
3ap9_A154 Galectin-8; beta-sandwich, carbohydrate/sugar bind 2e-25
3i8t_A164 Galectin-4; S-type lectin, carbohydrate binding, m 2e-24
3zxf_A138 Galectin-7; sugar binding protein; 1.38A {Homo sap 4e-24
3zsj_A138 Galectin-3; sugar binding protein; HET: LAT; 0.86A 9e-24
3b9c_A144 HSPC159; beta sandwich, unknown function; 1.90A {H 1e-23
1x50_A164 Galectin-4; GAL-BIND lectin, sugar binding, struct 3e-23
1is3_A135 Congerin II; complex with lactose and MES, sugar b 5e-23
2d6m_A159 Galectin-9, lectin, galactose binding, soluble 9; 6e-23
2zhn_A148 Galectin-9; beta sandwich, carbohydrate binding pr 8e-23
3nv1_A138 Galectin-9, galectin 9 short isoform variant; suga 8e-23
2wsu_A343 Putative fiber protein; viral protein, carbohydrat 1e-22
2wsu_A343 Putative fiber protein; viral protein, carbohydrat 1e-21
1w6n_A134 Galectin-1; carbohydrate-binding proteins, galacto 2e-22
1g86_A142 Charcot-leyden crystal protein; beta barrel, hydro 1e-21
3naj_A291 Galectin-8; sugar binding protein; HET: GAL BGC; 2 1e-21
3naj_A291 Galectin-8; sugar binding protein; HET: GAL BGC; 2 6e-17
1c1l_A137 Protein (congerin I); galectin, lectin, beta-galac 3e-21
3dui_A135 Beta-galactoside-binding lectin; carbohydrate-bind 8e-21
1qmj_A132 Beta-galactoside-binding lectin; galectin, sugar b 3e-19
1hlc_A129 Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} S 6e-19
1a78_A134 Galectin-1; S-lectin, carbohydrate binding, comple 3e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
2wkk_A150 Galectin-2; sugar-binding protein, secreted, cell 4e-09
2r0h_A164 CGL3 lectin; galectin-related, sugar binding prote 1e-06
1ww7_A160 Galectin; carbohydrate recognition domain,X-RAY cr 1e-04
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 155 Back     alignment and structure
 Score =  108 bits (270), Expect = 3e-28
 Identities = 38/192 (19%), Positives = 62/192 (32%), Gaps = 56/192 (29%)

Query: 164 FKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITE 223
           F  ++   +  G ++ + G  N    +F +DL            I LH N RL       
Sbjct: 19  FAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGK-----SKDIALHLNPRL------N 67

Query: 224 NPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSR 283
               V+N++     WGEE R  +                                     
Sbjct: 68  IKAFVRNSFL-QESWGEEERNITS------------------------------------ 90

Query: 284 TSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLK 343
                  FPF  G  F   I       +  V+G H   + +R   E   ++ + I+GD+ 
Sbjct: 91  -------FPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFK-ELSSIDTLEINGDIH 142

Query: 344 LISVLASGLPTS 355
           L+ V +   P+S
Sbjct: 143 LLEVRSWSGPSS 154
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N fucopentaose III, sugar binding protein; HET: GAL FUC NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A* 3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A* Length = 154 Back     alignment and structure
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A Length = 164 Back     alignment and structure
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A* Length = 138 Back     alignment and structure
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A* Length = 138 Back     alignment and structure
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A Length = 144 Back     alignment and structure
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein; HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3 PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A* 3ak0_A* 3ajz_A* Length = 135 Back     alignment and structure
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X* Length = 159 Back     alignment and structure
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A* Length = 148 Back     alignment and structure
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} PDB: 3nv2_A* 3nv3_A* 3nv4_A* Length = 138 Back     alignment and structure
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A* Length = 343 Back     alignment and structure
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A* Length = 343 Back     alignment and structure
>1w6n_A Galectin-1; carbohydrate-binding proteins, galactosides; 1.65A {Homo sapiens} SCOP: b.29.1.3 PDB: 1w6m_A 1w6o_A* 1w6p_A* 3t2t_A* 1gzw_A* 2km2_A 3oy8_A* 3oyw_A* 1w6q_A 2zkn_A* 3m2m_A* 1slt_A* 1sla_A* 1slb_A* 1slc_A* Length = 134 Back     alignment and structure
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A* Length = 142 Back     alignment and structure
>1c1l_A Protein (congerin I); galectin, lectin, beta-galactose-binding, sugar binding PROT; HET: GAL BGC; 1.50A {Conger myriaster} SCOP: b.29.1.3 PDB: 1c1f_A* 3ajy_A* Length = 137 Back     alignment and structure
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins, galactosides, galectin, acetylation, sugar binding protein; 2.10A {Gallus gallus} Length = 135 Back     alignment and structure
>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein; 2.15A {Gallus gallus} SCOP: b.29.1.3 Length = 132 Back     alignment and structure
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3 Length = 129 Back     alignment and structure
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex (lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum} SCOP: b.29.1.3 PDB: 1gan_A* Length = 134 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A* Length = 150 Back     alignment and structure
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose, chitooligosaccharides; HET: CTO; 1.90A {Coprinus cinereus} PDB: 2r0f_A* Length = 164 Back     alignment and structure
>1ww7_A Galectin; carbohydrate recognition domain,X-RAY crystallographic analysis, sulfate ION, sugar binding protein; 1.90A {Agrocybe cylindracea} PDB: 1ww4_A* 1ww6_A* 1ww5_A 2zgl_A 2zgm_A* 2zgn_A* 3afk_A* 3m3c_A* 3m3q_A* 2zgk_A 2zgs_A 2zgq_A 2zgr_A 3m3e_A* 2zgo_A* 3m3o_A* 2zgp_A 2zgu_A 2zgt_A Length = 160 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
2yro_A155 Galectin-8; GAL-BIND lectin, sugar binding, struct 100.0
3vkl_A291 Galectin-8; beta-sandwich, carbohydrate binding, o 100.0
2zhn_A148 Galectin-9; beta sandwich, carbohydrate binding pr 100.0
2d6m_A159 Galectin-9, lectin, galactose binding, soluble 9; 100.0
3ap9_A154 Galectin-8; beta-sandwich, carbohydrate/sugar bind 100.0
3zxf_A138 Galectin-7; sugar binding protein; 1.38A {Homo sap 100.0
1x50_A164 Galectin-4; GAL-BIND lectin, sugar binding, struct 100.0
3b9c_A144 HSPC159; beta sandwich, unknown function; 1.90A {H 100.0
3zsj_A138 Galectin-3; sugar binding protein; HET: LAT; 0.86A 100.0
3nv1_A138 Galectin-9, galectin 9 short isoform variant; suga 100.0
3i8t_A164 Galectin-4; S-type lectin, carbohydrate binding, m 100.0
1g86_A142 Charcot-leyden crystal protein; beta barrel, hydro 100.0
2wsu_A343 Putative fiber protein; viral protein, carbohydrat 100.0
1hlc_A129 Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} S 100.0
1w6n_A134 Galectin-1; carbohydrate-binding proteins, galacto 100.0
1is3_A135 Congerin II; complex with lactose and MES, sugar b 100.0
1c1l_A137 Protein (congerin I); galectin, lectin, beta-galac 100.0
1qmj_A132 Beta-galactoside-binding lectin; galectin, sugar b 100.0
3dui_A135 Beta-galactoside-binding lectin; carbohydrate-bind 100.0
1a78_A134 Galectin-1; S-lectin, carbohydrate binding, comple 100.0
3vkl_A291 Galectin-8; beta-sandwich, carbohydrate binding, o 100.0
2wsu_A343 Putative fiber protein; viral protein, carbohydrat 99.98
2wkk_A150 Galectin-2; sugar-binding protein, secreted, cell 99.97
1ww7_A160 Galectin; carbohydrate recognition domain,X-RAY cr 99.95
2r0h_A164 CGL3 lectin; galectin-related, sugar binding prote 99.95
4agr_A146 Galectin; sugar binding protein; 2.10A {Cinachyrel 99.94
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1e-37  Score=282.61  Aligned_cols=139  Identities=27%  Similarity=0.421  Sum_probs=128.9

Q ss_pred             CCCeeeeeCCCCCCCcEEEEEEEeCCCCCeEEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEcCccCCCCccc
Q 013397          161 RSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGE  240 (444)
Q Consensus       161 ~~p~~~~LPcGL~~GssItVvG~p~~~a~rF~InL~g~~~~~~~~p~I~LHfNPRf~gd~~s~~pvIV~NT~~~~g~WG~  240 (444)
                      .+||...|||||.+|++|+|+|++..++++|.|||+++.     .+||+|||||||+++      +|||||+.+ |.||.
T Consensus        16 ~vPf~~~ip~gl~~G~~i~I~G~v~~~~~rF~Inl~~g~-----~~dialHfnpRf~~~------~IV~Ns~~~-g~Wg~   83 (155)
T 2yro_A           16 SLPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGK-----SKDIALHLNPRLNIK------AFVRNSFLQ-ESWGE   83 (155)
T ss_dssp             CSSEEEECSSCCCTTCEEEEEEEECTTCCCEEEEEEETT-----TTEEEEEEECCSSSC------CCEEEEECS-SCBCC
T ss_pred             ccCEeeecCCCCccCCEEEEEEEECCCCCEEEEEEecCC-----CCCEEEEEEEEcCCC------EEEEEcccC-CEecc
Confidence            389999999999999999999999999999999999963     268999999999987      799999998 89999


Q ss_pred             ceecCCCCCCccccccchhhhccccCCCCCCCCccccccccccCCCCccCCCCCCCCeEEEEEEEcCceEEEEeCCeeee
Q 013397          241 EVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHIT  320 (444)
Q Consensus       241 EERc~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHvt  320 (444)
                      |||+.                                           ..|||.+|++|+|+|+++.++|+|+|||+|++
T Consensus        84 EEr~~-------------------------------------------~~fPF~~G~~F~l~I~~~~~~f~V~VNg~~~~  120 (155)
T 2yro_A           84 EERNI-------------------------------------------TSFPFSPGMYFEMIIYCDVREFKVAVNGVHSL  120 (155)
T ss_dssp             CCCCC-------------------------------------------SCCCCCTTSEEEEEEEECSSEEEEEETTEEEE
T ss_pred             ceeeC-------------------------------------------CCccccCCCeEEEEEEEcCCEEEEEECCEEEE
Confidence            99972                                           24699999999999999999999999999999


Q ss_pred             eeccCCCCCCCCccEEEEEccEEEEEEEeccCCCC
Q 013397          321 SFAYRETLEPWLVNEVRISGDLKLISVLASGLPTS  355 (444)
Q Consensus       321 sF~yR~~l~~~~Vt~L~I~GDv~l~SV~a~~lP~s  355 (444)
                      +|+||. .++++|++|.|.||++|++|.+.++|+|
T Consensus       121 ~F~hR~-~pl~~I~~l~I~Gdv~l~~V~~~~~~~~  154 (155)
T 2yro_A          121 EYKHRF-KELSSIDTLEINGDIHLLEVRSWSGPSS  154 (155)
T ss_dssp             EEECCC-SCGGGCCEEEEEESEEEEEEEEECCCCC
T ss_pred             EecCcC-CCHHHCcEEEEeCCEEEEEEEEecCCCC
Confidence            999996 2568999999999999999999999976
>3vkl_A Galectin-8; beta-sandwich, carbohydrate binding, oligosaccharide, sugar protein; HET: GAL BGC; 2.55A {Homo sapiens} PDB: 3naj_A* 3vkm_A* 4fqz_A* 3ojb_A Back     alignment and structure
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A* Back     alignment and structure
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X* Back     alignment and structure
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N fucopentaose III, sugar binding protein; HET: GAL FUC NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A* 3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A* Back     alignment and structure
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A* Back     alignment and structure
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A Back     alignment and structure
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A* Back     alignment and structure
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A* Back     alignment and structure
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A Back     alignment and structure
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A* Back     alignment and structure
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A* Back     alignment and structure
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3 Back     alignment and structure
>1w6n_A Galectin-1; carbohydrate-binding proteins, galactosides; 1.65A {Homo sapiens} SCOP: b.29.1.3 PDB: 1w6m_A 1w6o_A* 1w6p_A* 3t2t_A* 1gzw_A* 2km2_A 3oy8_A* 3oyw_A* 1w6q_A 2zkn_A* 3m2m_A* 1slt_A* 1sla_A* 1slb_A* 1slc_A* Back     alignment and structure
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein; HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3 PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A* 3ak0_A* 3ajz_A* Back     alignment and structure
>1c1l_A Protein (congerin I); galectin, lectin, beta-galactose-binding, sugar binding PROT; HET: GAL BGC; 1.50A {Conger myriaster} SCOP: b.29.1.3 PDB: 1c1f_A* 3ajy_A* Back     alignment and structure
>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein; 2.15A {Gallus gallus} SCOP: b.29.1.3 Back     alignment and structure
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins, galactosides, galectin, acetylation, sugar binding protein; 2.10A {Gallus gallus} SCOP: b.29.1.3 Back     alignment and structure
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex (lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum} SCOP: b.29.1.3 PDB: 1gan_A* Back     alignment and structure
>3vkl_A Galectin-8; beta-sandwich, carbohydrate binding, oligosaccharide, sugar protein; HET: GAL BGC; 2.55A {Homo sapiens} PDB: 3naj_A* 3vkm_A* 4fqz_A* 3ojb_A Back     alignment and structure
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A* Back     alignment and structure
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A* Back     alignment and structure
>1ww7_A Galectin; carbohydrate recognition domain,X-RAY crystallographic analysis, sulfate ION, sugar binding protein; 1.90A {Agrocybe cylindracea} PDB: 1ww4_A* 1ww6_A* 1ww5_A 2zgl_A 2zgm_A* 2zgn_A* 3afk_A* 3m3c_A* 3m3q_A* 2zgk_A 2zgs_A 2zgq_A 2zgr_A 3m3e_A* 2zgo_A* 3m3o_A* 2zgp_A 2zgu_A 2zgt_A Back     alignment and structure
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose, chitooligosaccharides; HET: CTO; 1.90A {Coprinus cinereus} PDB: 2r0f_A* Back     alignment and structure
>4agr_A Galectin; sugar binding protein; 2.10A {Cinachyrella} PDB: 4agg_A 4agv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 444
d1lcla_141 b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein 3e-24
d2gala_133 b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [Ta 1e-22
d1is3a_134 b.29.1.3 (A:) Congerin II {Conger eel (Conger myri 4e-21
d2nn8a1137 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo s 7e-20
d1w6na_134 b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [Ta 3e-19
d1c1la_135 b.29.1.3 (A:) Congerin I {Conger eel (Conger myria 1e-18
d1hlca_129 b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo s 2e-15
d1qmja_132 b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) 3e-13
d1a78a_134 b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [Ta 1e-12
d1ulea_150 b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprino 1e-10
>d1lcla_ b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Galectin (animal S-lectin)
domain: Charcot-Leyden crystal (CLC) protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 3e-24
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 60/187 (32%)

Query: 164 FKLQVPCGLTQGSSITIIGIPNGLLGN---FRIDLTGEPLPGEPDPPIVLHYNVRLLGDK 220
                   L+ GS++TI G P     N    ++D   E    + +  IV H+ V      
Sbjct: 5   VPYTEAASLSTGSTVTIKGRPLVCFLNEPYLQVDFHTEM---KEESDIVFHFQVCF---- 57

Query: 221 ITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLN 280
                 +V N+      W ++V   +                                  
Sbjct: 58  ---GRRVVMNSRE-YGAWKQQVESKN---------------------------------- 79

Query: 281 NSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISG 340
                      PF+ G  F  +I V  +  Q  V+G+   +F +R  ++P  V  V++  
Sbjct: 80  ----------MPFQDGQEFELSISVLPDKYQVMVNGQSSYTFDHR--IKPEAVKMVQVWR 127

Query: 341 DLKLISV 347
           D+ L   
Sbjct: 128 DISLTKF 134
>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster) [TaxId: 7943]} Length = 134 Back     information, alignment and structure
>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1c1la_ b.29.1.3 (A:) Congerin I {Conger eel (Conger myriaster) [TaxId: 7943]} Length = 135 Back     information, alignment and structure
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens) [TaxId: 9606]} Length = 129 Back     information, alignment and structure
>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 132 Back     information, alignment and structure
>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId: 38577]} Length = 134 Back     information, alignment and structure
>d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
d2gala_133 Galectin-7 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2nn8a1137 Galectin-3 CRD {Human (Homo sapiens) [TaxId: 9606] 100.0
d1lcla_141 Charcot-Leyden crystal (CLC) protein {Human (Homo 100.0
d1qmja_132 Galectin-1 {Chicken (Gallus gallus) [TaxId: 9031]} 99.98
d1hlca_129 S-lac lectin, L-14-II {Human (Homo sapiens) [TaxId 99.98
d1w6na_134 Galectin-1 {Human (Homo sapiens) [TaxId: 9606]} 99.98
d1is3a_134 Congerin II {Conger eel (Conger myriaster) [TaxId: 99.97
d1c1la_135 Congerin I {Conger eel (Conger myriaster) [TaxId: 99.97
d1a78a_134 Galectin-1 {Toad (Bufo arenarum) [TaxId: 38577]} 99.97
d1ulea_150 Galectin-2 {Inky cap fungus (Coprinopsis cinerea) 99.95
>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Galectin (animal S-lectin)
domain: Galectin-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-36  Score=263.40  Aligned_cols=132  Identities=27%  Similarity=0.390  Sum_probs=123.1

Q ss_pred             CCeeeeeCCCCCCCcEEEEEEEeCCCCCeEEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEcCccCCCCcccc
Q 013397          162 SSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEE  241 (444)
Q Consensus       162 ~p~~~~LPcGL~~GssItVvG~p~~~a~rF~InL~g~~~~~~~~p~I~LHfNPRf~gd~~s~~pvIV~NT~~~~g~WG~E  241 (444)
                      +||...||+||.+|++|+|+|++..++++|.|||+++.   ++++||+|||||||+++      .||+||+.+ |.||+|
T Consensus         1 vPf~~~lp~gl~~G~~i~i~G~~~~~~~~F~inl~~~~---~~~~di~~Hfn~Rf~~~------~IV~Ns~~~-g~Wg~E   70 (133)
T d2gala_           1 VPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGE---EQGSDAALHFNPRLDTS------EVVFNSKEQ-GSWGRE   70 (133)
T ss_dssp             CCEEEECTTCCCTTCEEEEEEECCTTCCBEEEEEESSS---STTCCEEEEEEEETTTT------EEEEEEEET-TEECCC
T ss_pred             CCEeeecCCCCCCCCEEEEEEEECCCCCEEEEEEEeCC---CCCCCEEEEEeeEcCCC------EEEEECCcC-CeECCc
Confidence            59999999999999999999999999999999999864   24678999999999877      799999998 899999


Q ss_pred             eecCCCCCCccccccchhhhccccCCCCCCCCccccccccccCCCCccCCCCCCCCeEEEEEEEcCceEEEEeCCeeeee
Q 013397          242 VRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITS  321 (444)
Q Consensus       242 ERc~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHvts  321 (444)
                      ||+                                            ..|||.+|++|+|+|.++.++|+|+|||+|+++
T Consensus        71 er~--------------------------------------------~~~Pf~~G~~F~l~I~~~~~~f~V~vng~~~~~  106 (133)
T d2gala_          71 ERG--------------------------------------------PGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHH  106 (133)
T ss_dssp             EEC--------------------------------------------SSCCCCTTCEEEEEEEECSSEEEEEETTEEEEE
T ss_pred             eEE--------------------------------------------CCCCCCCCCeeEEEEEECCCEEEEEECCeeEEE
Confidence            996                                            479999999999999999999999999999999


Q ss_pred             eccCCCCCCCCccEEEEEccEEEEEEEe
Q 013397          322 FAYRETLEPWLVNEVRISGDLKLISVLA  349 (444)
Q Consensus       322 F~yR~~l~~~~Vt~L~I~GDv~l~SV~a  349 (444)
                      |+||.  +++.|++|.|.||++|++|..
T Consensus       107 F~~R~--p~~~i~~l~i~Gdv~l~~V~i  132 (133)
T d2gala_         107 FRHRL--PLARVRLVEVGGDVQLDSVRI  132 (133)
T ss_dssp             EECSS--CGGGCCEEEEEESCEEEEEEE
T ss_pred             ecCcC--ChhhccEEEEECCEEEEEEEE
Confidence            99996  567999999999999999964
>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lcla_ b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster) [TaxId: 7943]} Back     information, alignment and structure
>d1c1la_ b.29.1.3 (A:) Congerin I {Conger eel (Conger myriaster) [TaxId: 7943]} Back     information, alignment and structure
>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId: 38577]} Back     information, alignment and structure
>d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]} Back     information, alignment and structure