Citrus Sinensis ID: 013408

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---

MVLLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTNYQKVKKMSKSL

ccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccHHHHHHHHHcccHHHHHcccccccEEEEcccHHHHHccccHHHHHHHcccccHHHHHHHHcccccccEEccccccccccEEEcccccEEEEEEEccccEEEcccEEEEcccEEccccEEEEEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHccHHHccccccHHHHHHHHcccccccHHHHHHHHHHHccccccccccccEEEEEEccccEEEEcccccEEEEccccccccEEEEEEcccEEccccccccccHHHccccccc

ccEEHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHcHHHHHHHHcccccEEEEcccHHHHHHccccHHHHHHcccccHHHHHHHHHEEEccccccHHHHccccccEEEccccEEEEEEEcccEEEEcccEEEcccHccccccEEEEEcEEEccccHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHccccccHHHHHHHEEccccccHHHHHHHHHHcccEEEcccccccEEEEEEccccEEEccccccEEEEccccEcccEEEEEccccEccccccccccccEEEEccccc

MVLLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLTASMQlqgnnathsgqinsNSVLVALLDSHYTELSELVEKALLLQpledavgkhsitifapknealerdldPEFKrfllepgnlkSLQTLLLHHIVSTRIELnrtatestqhhtlssdsveltshdsgdkfisqskvihpnavdrpdgvihgierlliprsvqqdfnnrrnlrsisavrpegapevdprtnrlkkptpaskpgsspalpvyyamapgpslapapapgpggphhhfngeKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTtdqlsepgapeqiiyyhvipeyqteeSMYNAVRRFgkisydtlrlphkvlaqeadgsvkfghgdgsaylfdpdiytdgrisvqgidgvlfppeetstnyQKVKKMSKSL

MVLLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITifapknealeRDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTatestqhhtlssdsvelTSHDSGDKFIsqskvihpnavdrpdgVIHGIERLliprsvqqdfnnrrnlrsisavrpegapevdprtnrlkkptpaskpgsspaLPVYYAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTdqlsepgapEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGvlfppeetstnyqkvkkmsksl

MVLLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMapgpslapapapgpggpHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTNYQKVKKMSKSL

**LLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELN**********************************IH*NAVDRPDGVIHGIERLLIPRS******************************************************************************QVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDE****************EQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLF*******************

*VLLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLT********************VLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTAT*****HTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDF********ISAVRPEGAPEVDPRT***K***PASKPGSSPALPVYYAMAPGPS**************HFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESM*N****FGKISYDTLRLPHKV********VKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEE********KK*S***

MVLLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRT*******************HDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVR*************************SPALPVYYAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEE***************

MVLLRTIIRSFNSFYSVSMAETRKLISFLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRN*RSIS**RPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTNYQKVKK*****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		443	2.2.26 [Sep-21-2011]
Q66GR0		458	Fasciclin-like arabinogal	yes	no	0.927	0.897	0.739	1e-164
Q8RWC5		445	Fasciclin-like arabinogal	no	no	0.889	0.885	0.77	1e-162
Q93W32		462	Fasciclin-like arabinogal	no	no	0.902	0.865	0.743	1e-157
Q9FT45		436	Fasciclin-like arabinogal	no	no	0.839	0.853	0.771	1e-155
Q8WWQ8		2551	Stabilin-2 OS=Homo sapien	yes	no	0.318	0.055	0.265	9e-05
Q8R4U0		2559	Stabilin-2 OS=Mus musculu	no	no	0.340	0.059	0.258	0.0002
Q62009		838	Periostin OS=Mus musculus	yes	no	0.327	0.173	0.251	0.0002
Q8CFM6		1431	Stabilin-2 (Fragment) OS=	no	no	0.313	0.097	0.286	0.0003
Q15063		836	Periostin OS=Homo sapiens	no	no	0.329	0.174	0.240	0.0005

>sp\|Q66GR0\|FLA17_ARATH Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1	Back alignment and function desciption

 Score =  578 bits (1489), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/419 (73%), Positives = 349/419 (83%), Gaps = 8/419 (1%)

Query: 30  LLMFIFPLQLTASMQLQGNNA--THSGQINSNSVLVALLDSHYTELSELVEKALLLQPLE 87
           L +F   L  +A+  L  N +  + SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LE
Sbjct: 14  LFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLE 73

Query: 88  DAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATE 147
           DAVG+H+ITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLL+ HI+  R+  N+  +E
Sbjct: 74  DAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSE 133

Query: 148 ST---QHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQD 204
            +   +HHTL +D V L S+  G K +  +++I P+ + RPDG+IHGIERLLIPRSVQ+D
Sbjct: 134 ESGRVKHHTLGNDQVRL-SNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQED 192

Query: 205 FNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMAPGPSLAPAPA 264
           FN RR+L+SISAV PEGAPEVDPRTNRLKKP      GS PALP+  AMAPGPSLAPAPA
Sbjct: 193 FNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPA 252

Query: 265 PGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLA 324
           PGPGG  HHF+GE QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLA
Sbjct: 253 PGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLA 312

Query: 325 PNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVL 384
           PNDEAMAKLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYN+VRRFGK+ +DTLR PHKV 
Sbjct: 313 PNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRFPHKVA 372

Query: 385 AQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTNYQKVKKMSKSL 443
           A+EADGSVKFG G+ SAYLFDPDIYTDGRISVQGIDGVLFP EE     + VKK  K +
Sbjct: 373 AKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFPQEEEVV--ESVKKPVKKI 429

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8RWC5\|FLA16_ARATH Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1	Back alignment and function description

>sp\|Q93W32\|FLA18_ARATH Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1	Back alignment and function description

>sp\|Q9FT45\|FLA15_ARATH Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1	Back alignment and function description

>sp\|Q8WWQ8\|STAB2_HUMAN Stabilin-2 OS=Homo sapiens GN=STAB2 PE=1 SV=3	Back alignment and function description

>sp\|Q8R4U0\|STAB2_MOUSE Stabilin-2 OS=Mus musculus GN=Stab2 PE=1 SV=1	Back alignment and function description

>sp\|Q62009\|POSTN_MOUSE Periostin OS=Mus musculus GN=Postn PE=1 SV=2	Back alignment and function description

>sp\|Q8CFM6\|STAB2_RAT Stabilin-2 (Fragment) OS=Rattus norvegicus GN=Stab2 PE=1 SV=1	Back alignment and function description

>sp\|Q15063\|POSTN_HUMAN Periostin OS=Homo sapiens GN=POSTN PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		443
157273664		460	fasciclin-like arabinogalactan protein 1	0.866	0.834	0.835	1e-175
224110084		409	fasciclin-like domain-containing protein	0.835	0.904	0.871	1e-174
157273666		457	fasciclin-like arabinogalactan protein 1	0.851	0.824	0.847	1e-173
224100561		394	fasciclin-like domain-containing protein	0.871	0.979	0.829	1e-171
449442600		466	PREDICTED: fasciclin-like arabinogalacta	0.934	0.888	0.757	1e-171
242032747		474	hypothetical protein SORBIDRAFT_01g00577	0.844	0.789	0.761	1e-165
224091467		466	predicted protein [Populus trichocarpa]	0.869	0.826	0.796	1e-163
115349936		460	fasciclin-like protein FLA26 [Triticum a	0.851	0.819	0.749	1e-163
449521709		465	PREDICTED: fasciclin-like arabinogalacta	0.860	0.819	0.793	1e-163
449437504		465	PREDICTED: fasciclin-like arabinogalacta	0.860	0.819	0.793	1e-162

>gi\|157273664\|gb\|ABV27486.1\| fasciclin-like arabinogalactan protein 15 [Gossypium hirsutum]	Back alignment and taxonomy information

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 326/390 (83%), Positives = 354/390 (90%), Gaps = 6/390 (1%)

Query: 42  SMQLQGNNA--THSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFA 99
           S+ LQ N++    SGQINSNSVLVALLDSHYTEL+ELVEKALLLQ LE+ VGKH+ITIFA
Sbjct: 25  SLALQENSSATVRSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEETVGKHNITIFA 84

Query: 100 PKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELN---RTATESTQHHTLSS 156
           PKNEALERDLDPEFKRFLLEPGNLKSLQTLLL+HIV  RI+ +   ++ +  T H TLS+
Sbjct: 85  PKNEALERDLDPEFKRFLLEPGNLKSLQTLLLYHIVPARIDRHSWPKSTSALTHHFTLSN 144

Query: 157 DSVELTSHDS-GDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSIS 215
           + VEL+  DS G+KFI  +KVI  NAVDRPDGVIHGIE+LLIPRSVQQDFNNRR+LRSIS
Sbjct: 145 ERVELSGDDSSGEKFIGSAKVISSNAVDRPDGVIHGIEQLLIPRSVQQDFNNRRSLRSIS 204

Query: 216 AVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMAPGPSLAPAPAPGPGGPHHHFN 275
           AV+PEGAPEVDPRT+RLKKP P  KPG+ P LP+Y AMAPGPSLAPAPAPGPGGPHHHFN
Sbjct: 205 AVKPEGAPEVDPRTHRLKKPAPPVKPGAPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFN 264

Query: 276 GEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTT 335
           G +QVKDFIQTL+ YGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTT
Sbjct: 265 GMRQVKDFIQTLIQYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTT 324

Query: 336 DQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFG 395
           DQLSEPGAPEQIIYYH+IPEYQTEESMYNAVRRFGK+SYDTLRLPHKVLAQEADGSV+FG
Sbjct: 325 DQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQEADGSVRFG 384

Query: 396 HGDGSAYLFDPDIYTDGRISVQGIDGVLFP 425
           H DGSAYLFDPDIYTDGRISVQGIDGVLFP
Sbjct: 385 HSDGSAYLFDPDIYTDGRISVQGIDGVLFP 414

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224110084\|ref\|XP_002315410.1\| fasciclin-like domain-containing protein [Populus trichocarpa] gi\|222864450\|gb\|EEF01581.1\| fasciclin-like domain-containing protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|157273666\|gb\|ABV27487.1\| fasciclin-like arabinogalactan protein 16 [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|224100561\|ref\|XP_002311924.1\| fasciclin-like domain-containing protein [Populus trichocarpa] gi\|222851744\|gb\|EEE89291.1\| fasciclin-like domain-containing protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449442600\|ref\|XP_004139069.1\| PREDICTED: fasciclin-like arabinogalactan protein 17-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|242032747\|ref\|XP_002463768.1\| hypothetical protein SORBIDRAFT_01g005770 [Sorghum bicolor] gi\|241917622\|gb\|EER90766.1\| hypothetical protein SORBIDRAFT_01g005770 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|224091467\|ref\|XP_002309262.1\| predicted protein [Populus trichocarpa] gi\|222855238\|gb\|EEE92785.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|115349936\|gb\|ABI95416.1\| fasciclin-like protein FLA26 [Triticum aestivum]	Back alignment and taxonomy information

>gi\|449521709\|ref\|XP_004167872.1\| PREDICTED: fasciclin-like arabinogalactan protein 17-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449437504\|ref\|XP_004136532.1\| PREDICTED: fasciclin-like arabinogalactan protein 17-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		443
TAIR\|locus:2164290		458	FLA17 "AT5G06390" [Arabidopsis	0.927	0.897	0.701	3e-149
TAIR\|locus:2039270		445	FLA16 "FASCICLIN-like arabinog	0.925	0.921	0.714	1e-148
TAIR\|locus:2098338		462	FLA18 "AT3G11700" [Arabidopsis	0.923	0.885	0.693	1.4e-144
TAIR\|locus:2100564		436	FLA15 "FASCICLIN-like arabinog	0.916	0.931	0.695	7.5e-144
TAIR\|locus:2166379		125	AT5G05650 "AT5G05650" [Arabido	0.198	0.704	0.597	2.8e-24
ZFIN\|ZDB-GENE-030131-9120		782	postnb "periostin, osteoblast	0.345	0.195	0.251	3e-05
MGI\|MGI:1926321		838	Postn "periostin, osteoblast s	0.316	0.167	0.296	4.9e-05
UNIPROTKB\|Q8WWQ8		2551	STAB2 "Stabilin-2" [Homo sapie	0.316	0.054	0.277	5.8e-05
RGD\|1305285		838	Postn "periostin, osteoblast s	0.282	0.149	0.276	6e-05
UNIPROTKB\|F1P4N9		841	POSTN "Uncharacterized protein	0.286	0.151	0.280	0.0001

TAIR\|locus:2164290 FLA17 "AT5G06390" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
 Identities = 294/419 (70%), Positives = 333/419 (79%)

Query:    30 LLMFIFPLQLTASMQLQGNNA--THSGQINSNSVLVALLDSHYTELSELVEKALLLQPLE 87
             L +F   L  +A+  L  N +  + SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LE
Sbjct:    14 LFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLE 73

Query:    88 DAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATE 147
             DAVG+H+ITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLL+ HI+  R+  N+  +E
Sbjct:    74 DAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSE 133

Query:   148 ST---QHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQD 204
              +   +HHTL +D V L S+  G K +  +++I P+ + RPDG+IHGIERLLIPRSVQ+D
Sbjct:   134 ESGRVKHHTLGNDQVRL-SNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQED 192

Query:   205 FNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXX 264
             FN RR+L+SISAV PEGAPEVDPRTNRLKKP      GS PALP+  AM           
Sbjct:   193 FNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPA 252

Query:   265 XXXXXXHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLA 324
                    HHF+GE QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLA
Sbjct:   253 PGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLA 312

Query:   325 PNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVL 384
             PNDEAMAKLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYN+VRRFGK+ +DTLR PHKV 
Sbjct:   313 PNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRFPHKVA 372

Query:   385 AQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTNYQKVKKMSKSL 443
             A+EADGSVKFG G+ SAYLFDPDIYTDGRISVQGIDGVLFP EE     + VKK  K +
Sbjct:   373 AKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFPQEEEVV--ESVKKPVKKI 429

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

TAIR\|locus:2039270 FLA16 "FASCICLIN-like arabinogalactan protein 16 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098338 FLA18 "AT3G11700" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2100564 FLA15 "FASCICLIN-like arabinogalactan protein 15 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166379 AT5G05650 "AT5G05650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-9120 postnb "periostin, osteoblast specific factor b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1926321 Postn "periostin, osteoblast specific factor" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WWQ8 STAB2 "Stabilin-2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1305285 Postn "periostin, osteoblast specific factor" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P4N9 POSTN "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWC5	FLA16_ARATH	No assigned EC number	0.77	0.8893	0.8853	no	no
Q9FT45	FLA15_ARATH	No assigned EC number	0.7718	0.8397	0.8532	no	no
Q66GR0	FLA17_ARATH	No assigned EC number	0.7398	0.9277	0.8973	yes	no
Q93W32	FLA18_ARATH	No assigned EC number	0.7432	0.9029	0.8658	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		443
pfam02469		123	pfam02469, Fasciclin, Fasciclin domain	8e-19
smart00554		97	smart00554, FAS1, Four repeated domains in the Fas	5e-13
smart00554		97	smart00554, FAS1, Four repeated domains in the Fas	1e-09
pfam02469		123	pfam02469, Fasciclin, Fasciclin domain	5e-06
COG2335		187	COG2335, COG2335, Secreted and surface protein con	2e-05
COG2335		187	COG2335, COG2335, Secreted and surface protein con	4e-04

>gnl\|CDD\|217054 pfam02469, Fasciclin, Fasciclin domain	Back alignment and domain information

 Score = 81.5 bits (202), Expect = 8e-19
 Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 68  SHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQ 127
             ++    L++ A L+  L  + G    T+FAP +EA  + L      FLL+  + + L+
Sbjct: 1   PGFSTFVALLKAAGLVDTLNGSQG--PFTVFAPTDEAFAK-LPAGTLNFLLK--DKEQLK 55

Query: 128 TLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDG 187
            LL +H+V  R+  +      T   TL    + + +   G   ++ ++V+  + ++  +G
Sbjct: 56  NLLKYHVVPGRLTSSDLKNGGT-LATLQGSKLRV-NVTGGTVTVNGARVVQSD-IEATNG 112

Query: 188 VIHGIERLLIP 198
           VIH I+++L+P
Sbjct: 113 VIHVIDKVLLP 123

This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria. Length = 123

>gnl\|CDD\|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>gnl\|CDD\|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>gnl\|CDD\|217054 pfam02469, Fasciclin, Fasciclin domain	Back alignment and domain information

>gnl\|CDD\|225214 COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|225214 COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		443
COG2335		187	Secreted and surface protein containing fasciclin-	99.96
COG2335		187	Secreted and surface protein containing fasciclin-	99.89
PF02469		128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.88
KOG1437		682	consensus Fasciclin and related adhesion glycoprot	99.88
KOG1437		682	consensus Fasciclin and related adhesion glycoprot	99.88
smart00554		99	FAS1 Four repeated domains in the Fasciclin I fami	99.84
smart00554		99	FAS1 Four repeated domains in the Fasciclin I fami	99.77
PF02469		128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.72

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Probab=99.96  E-value=8.1e-29  Score=220.46  Aligned_cols=139  Identities=25%  Similarity=0.407  Sum_probs=129.7

Q ss_pred             CCCccHHHHHhcCCChHHHHHHHHHcCChhHhhhccCCCCeEEEecCcHHHhcCCChHHHHhccCCCCHHHHHHHHhcce
Q 013408           55 QINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHI  134 (443)
Q Consensus        55 ~~~~ni~~~~~~~~~~s~f~~~l~~agl~~~L~~~~~~~~~TvFAPtd~Af~~~l~~~~~~~l~~~~~~~~L~~lL~yHi  134 (443)
                      ....+|++.+.++++|++|..+++.++|.++|+   +.|+||||||+|+||.+ ++......|..|+++.+|..+|.|||
T Consensus        45 ~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~---~~gp~TVFaPtn~AFa~-lp~~T~~~Ll~pen~~~L~~iLtYHV  120 (187)
T COG2335          45 GNRADIVESAANNPSFTTLVAALKAAGLVDTLN---ETGPFTVFAPTNEAFAK-LPAGTLDALLKPENKPLLTKILTYHV  120 (187)
T ss_pred             cchhHHHHHHccCcchHHHHHHHHhhhhHHHhc---CCCCeEEecCCHHHHHh-CChhHHHHHhCccchhhhheeeEEEE
Confidence            455799999999999999999999999999999   88999999999999999 89988888999999999999999999


Q ss_pred             ecceeecccccCCCccccccCCCeEEEEEecCCcEEEcceEEEecCcEEcCCceEEEeCccccCCC
Q 013408          135 VSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRS  200 (443)
Q Consensus       135 v~~~~~~~~l~~g~~~~~Tl~g~~l~v~~~~~g~v~vn~a~V~~~d~i~a~NGvIHvID~VL~P~~  200 (443)
                      ++|.+..+++..... .+|+.|..++|... +++++||.++++.+| |.++||+||+||+||+||.
T Consensus       121 v~Gk~~~~~l~~~~~-v~t~~G~~~~i~~~-~~~~~Vn~a~v~~~d-i~a~NgvIhvID~Vl~Pp~  183 (187)
T COG2335         121 VEGKITAADLKSSGS-VKTVQGADLKIKVT-GGGVYVNDATVTIAD-INASNGVIHVIDKVLIPPM  183 (187)
T ss_pred             EcCcccHHHhhcccc-ceeecCceEEEEEc-CCcEEEeeeEEEecc-EeccCcEEEEEeeeccCCC
Confidence            999999999986554 68999999999995 566999999999999 9999999999999999985

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues	Back alignment and domain information

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]	Back alignment and domain information

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]	Back alignment and domain information

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		443
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	6e-14
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	5e-05
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	4e-12
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	2e-07
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	3e-07
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	2e-06
2vxp_A		132	Transforming growth factor-beta-induced protein IG	5e-10
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	7e-10
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137	Back alignment and structure

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 63  VALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGN 122
            A     +T L    E A L+  L+   G    T+FAP + A    L       LL+P N
Sbjct: 8   TATGAGSFTTLLTAAEAAGLVDTLK---GDGPFTVFAPTDAAFA-ALPEGTVEDLLKPEN 63

Query: 123 LKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAV 182
            + L  +L +H+V   + ++   TE     T+   ++ +T    G   ++   +  P+ V
Sbjct: 64  KEKLTEILTYHVVPGEV-MSSDLTEGMTAETVEGGALTVTL--EGGPKVNGVSISQPD-V 119

Query: 183 DRPDGVIHGIERLLIPRS 200
           D  +GVIH I+ +L+P +
Sbjct: 120 DASNGVIHVIDGVLMPGA 137

PyMOL of 1w7d

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324	Back alignment and structure

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A Length = 132	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		443
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	100.0
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.96
2vxp_A		132	Transforming growth factor-beta-induced protein IG	99.96
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	99.95
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.91
2vxp_A		132	Transforming growth factor-beta-induced protein IG	99.9
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	99.87
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.85

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1	Back alignment and structure

Probab=100.00  E-value=2.7e-44  Score=357.66  Aligned_cols=274  Identities=15%  Similarity=0.235  Sum_probs=199.4

Q ss_pred             ccHHHHHh------cCCChHHHHHHHHHcC--ChhHhhhccCCCCeEEEecCcHHHhcCCChHHHHhccCCCCHHHHHHH
Q 013408           58 SNSVLVAL------LDSHYTELSELVEKAL--LLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTL  129 (443)
Q Consensus        58 ~ni~~~~~------~~~~~s~f~~~l~~ag--l~~~L~~~~~~~~~TvFAPtd~Af~~~l~~~~~~~l~~~~~~~~L~~l  129 (443)
                      .||++++.      ++++||+|.++|+++|  |.+.|+   +.++||||||+|+||.++ ...  .++   .+++.|+++
T Consensus         6 ~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~---~~~~~TvFAPtn~Af~~~-~~~--~l~---~~~~~l~~i   76 (324)
T 1o70_A            6 TTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDIN---SLTEVTILAPSNEAWNSS-NIN--NVL---RDRNKMRQI   76 (324)
T ss_dssp             -------------CCHHHHHHHHHHHHHTCSHHHHHHH---TCSSEEEEEECHHHHHHT-CTH--HHH---TCHHHHHHH
T ss_pred             hhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHc---CCCCeEEEEEChHhhhcc-cHh--hhh---CCHHHHHHH
Confidence            56777776      6889999999999999  999999   789999999999999983 221  112   256789999


Q ss_pred             HhcceecceeecccccCCC----ccccccCCCe-EEEEEec---CCcEEEcc----eEEEecCcEEcCCceEEEeCcccc
Q 013408          130 LLHHIVSTRIELNRTATES----TQHHTLSSDS-VELTSHD---SGDKFISQ----SKVIHPNAVDRPDGVIHGIERLLI  197 (443)
Q Consensus       130 L~yHiv~~~~~~~~l~~g~----~~~~Tl~g~~-l~v~~~~---~g~v~vn~----a~V~~~d~i~a~NGvIHvID~VL~  197 (443)
                      |+|||++|+++.++|..+.    ..++|+.|.. +.++...   ++.+++++    ++|+.+| +.++||+||+||+||.
T Consensus        77 L~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~d-i~~~NGvIhvID~VL~  155 (324)
T 1o70_A           77 LNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQAD-VAQTNGYVHIIDHVLG  155 (324)
T ss_dssp             HHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEE-EECSSEEEEEESSCTT
T ss_pred             HHhcEeCCeecHHHHhhccCCCceEEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEecc-ccccCcEEEEEchhhh
Confidence            9999999999999987654    1468999987 6777642   23588874    9999999 9999999999999999


Q ss_pred             CCCcccccccccccccCcCCCCCCCCCCCccccccCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCccccCC
Q 013408          198 PRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMAPGPSLAPAPAPGPGGPHHHFNGE  277 (443)
Q Consensus       198 P~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~a~a~~P~~~~~~~~~~~~  277 (443)
                      |+...                                                                   +.+.+..+
T Consensus       156 pp~~t-------------------------------------------------------------------i~~~l~~~  168 (324)
T 1o70_A          156 VPYTT-------------------------------------------------------------------VLGKLESD  168 (324)
T ss_dssp             SCCSC-------------------------------------------------------------------HHHHHHHC
T ss_pred             hchhh-------------------------------------------------------------------HHHHhhcC
Confidence            87421                                                                   11122234


Q ss_pred             cchhhHHHHHHHcCCCchHHHHHHHhhhhhhhcccccc-CCceeEEEecChHHHhcCC----cc---CC-CCCc-hHHHH
Q 013408          278 KQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVS-EGYVLTVLAPNDEAMAKLT----TD---QL-SEPG-APEQI  347 (443)
Q Consensus       278 ~~~s~f~~~l~~~~~~~~~~~~l~~~~~~a~~~~~L~~-~~~~~TVFAPtN~AF~~l~----~~---~l-~~~~-~L~~i  347 (443)
                      ++|+.|..+                 ++.+++.+.|.+ .+ +||||||+|+||++++    .+   .| .+.. .|+++
T Consensus       169 ~~fs~~~~~-----------------l~~~gl~~~L~~~~~-~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~i  230 (324)
T 1o70_A          169 PMMSDTYKM-----------------GKFSHFNDQLNNTQR-RFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSI  230 (324)
T ss_dssp             GGGHHHHHH-----------------TTTTTTTGGGGCSSS-EEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHH
T ss_pred             chHHHHHHH-----------------HHhhCHHHHhCCCCC-CeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHH
Confidence            556766552                 233455566764 45 9999999999999984    22   22 3434 89999


Q ss_pred             hhhcccCC--ccchHHhhHHhhhcCceeccccCCCceEEEE--ecCCeEEEccCCcceEEeCCceeecCCeEEEEeCccc
Q 013408          348 IYYHVIPE--YQTEESMYNAVRRFGKISYDTLRLPHKVLAQ--EADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVL  423 (443)
Q Consensus       348 L~yHVv~~--~~~~~~l~~~~~~~g~~~~~Tl~~g~~l~~~--~~~~~v~v~~~~~~a~V~~~di~~~nG~vIH~ID~VL  423 (443)
                      |+|||+++  ..+...+.+.....+...++|++  ..+.+.  ..++.+.++.+++.++|+.+||.++|| |||+||+||
T Consensus       231 L~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~--~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NG-vIHvID~VL  307 (324)
T 1o70_A          231 LERHLAISDKEYTMKDLVKFSQESGSVILPTFR--DSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG-IIHVIDYPL  307 (324)
T ss_dssp             HHTTEEEESSCCCHHHHHHHHHHSSSEEEECSS--SEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE-EEEEESSCS
T ss_pred             HHhcEeCCcceEcHHHHhhhccCCCeeeeeccC--CcEEEEEEecCCEEEEEecCceeEEEEcccccCCC-eEEEeceee
Confidence            99999997  66655554311111233477887  456664  367889888555569999999999999 999999999


Q ss_pred             cCCCCC
Q 013408          424 FPPEET  429 (443)
Q Consensus       424 ~P~~~~  429 (443)
                      +|++..
T Consensus       308 ~P~~~~  313 (324)
T 1o70_A          308 LEEKDV  313 (324)
T ss_dssp             CCTTTT
T ss_pred             cCCccc
Confidence            999754

PyMOL of 1o70

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A	Back alignment and structure

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1	Back alignment and structure

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A	Back alignment and structure

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		443
d1o70a2		157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	5e-10
d1o70a2		157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	6e-07
d1o70a1		140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	2e-09
d1o70a1		140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	1e-06
d1nyoa_		163	b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobact	1e-08
d1nyoa_		163	b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobact	9e-04

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157	Back information, alignment and structure


class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.7 bits (133), Expect = 5e-10
 Identities = 19/147 (12%), Positives = 52/147 (35%), Gaps = 16/147 (10%)

Query: 67  DSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALER--DLDPEFKRFLLEPGNLK 124
           D   ++  ++ + +     L +   +   T F P+++  ++     P   + L       
Sbjct: 10  DPMMSDTYKMGKFSHFNDQLNNTQRR--FTYFVPRDKGWQKTELDYPSAHKKLFMADFSY 67

Query: 125 SLQTLLLHHIV------STRIELNRTATESTQHHTLSSDSVELTSHDSG-----DKFISQ 173
             +++L  H+       + +  +  +    +       DS+ +   +            +
Sbjct: 68  HSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKK 127

Query: 174 SKVIHPNAVDRPDGVIHGIERLLIPRS 200
             V  P+ V+  +G+IH I+  L+   
Sbjct: 128 INVYRPD-VECTNGIIHVIDYPLLEEK 153

PyMOL of d1o70a2

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140	Back information, alignment and structure

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 163	Back information, alignment and structure

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 163	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		443
d1nyoa_		163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.94
d1nyoa_		163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.89
d1o70a2		157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.87
d1o70a2		157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.84
d1o70a1		140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.83
d1o70a1		140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.8

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1e-27  Score=211.80  Aligned_cols=132  Identities=21%  Similarity=0.307  Sum_probs=116.0

Q ss_pred             CccHHHHHhcCCChHHHHHHHH-----HcCChhHhhhccCCCCeEEEecCcHHHhcCCChHHHHhccCCCCHHHHHHHHh
Q 013408           57 NSNSVLVALLDSHYTELSELVE-----KALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLL  131 (443)
Q Consensus        57 ~~ni~~~~~~~~~~s~f~~~l~-----~agl~~~L~~~~~~~~~TvFAPtd~Af~~~l~~~~~~~l~~~~~~~~L~~lL~  131 (443)
                      ..++...+..+++||+|.++++     ++||.+.|+   + |+||||||+|+||.+ ++....+.+..  +++.|+++|+
T Consensus        27 ~~~v~~~a~~~p~lstl~~Al~a~~~~~a~L~~~L~---~-gpfTvFAPtn~AF~~-l~~~~~~~l~~--~~~~L~~iL~   99 (163)
T d1nyoa_          27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN---S-GQYTVFAPTNAAFSK-LPASTIDELKT--NSSLLTSILT   99 (163)
T ss_dssp             HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHT---S-SSEEECCBCHHHHHH-SCHHHHHHHTT--CSSHHHHHHH
T ss_pred             cchHHHHHhcCCchHHHHHHHhhccccccchhHhhc---C-CCeEEEEECcHHHHh-cCHHHHHhhhh--hHHHHHHhhh
Confidence            3578888899999999999998     479999998   4 899999999999999 67766666543  3357999999


Q ss_pred             cceecceeecccccCCCccccccCCCeEEEEEecCCcEEEcceEEEecCcEEcCCceEEEeCccccCCC
Q 013408          132 HHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRS  200 (443)
Q Consensus       132 yHiv~~~~~~~~l~~g~~~~~Tl~g~~l~v~~~~~g~v~vn~a~V~~~d~i~a~NGvIHvID~VL~P~~  200 (443)
                      |||++|+++.+++...   ++|++|..+.++. .++.++||+++|+.+| |.++|||||+||+||+||.
T Consensus       100 yHVv~g~~~~~~l~~~---~~Tl~G~~l~v~~-~~~~i~v~~a~Vv~~d-i~a~NGvIHvID~VLlPPa  163 (163)
T d1nyoa_         100 YHVVAGQTSPANVVGT---RQTLQGASVTVTG-QGNSLKVGNADVVCGG-VSTANATVYMIDSVLMPPA  163 (163)
T ss_dssp             HTEEESCCCTTTSCEE---EECTTSSEEEEEE-CSSCEEETTEECSSBC-CCCSSEEEBCBSSCCCCCC
T ss_pred             hhhhhhhhhhhhhhhh---hhhccCcceeEEe-cCCEEEEeceEEEECC-eecCCcEEEEECccccCCC
Confidence            9999999999998642   5799999999998 4788999999999999 9999999999999999983

PyMOL of d1nyoa_

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure