Citrus Sinensis ID: 013427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MMSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHEEEEEEEcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHEEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccHHEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mmsddfegTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLcdchrgpdpeygpgrnrsyLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKsncyhregheaaceysDTYYMLIFGAVQLILsqapdfhniQSLSVIAAVMSFAYSFIGFGLGVAKVIGngfvmgsfsgvstTTSIEKMWLVAQALGDIAFAYPYSLILIEIQdtlkspppanqtmkkastmSIITTTIFYLFCggfgyaafgdntpgnlltgfgfyepywlidLANAFIVIHLVGgyqvysqpiFAHFEKWIcekfpengflnnefflkpplmpafrwnplrlcfRTVYVVSVTAIAMSFPYFNQVLGVIggvifwpltiyfpVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
MMSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
MMSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
******EGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT****************MSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII*****
***DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP**QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL*
MMSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
*****FEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA***
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MMSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q9FF99467 Probable amino acid perme yes no 0.979 0.929 0.584 1e-143
Q38967493 Amino acid permease 2 OS= no no 0.970 0.872 0.527 1e-136
Q39134476 Amino acid permease 3 OS= no no 0.954 0.888 0.525 1e-129
O80592475 Amino acid permease 8 OS= no no 0.981 0.915 0.517 1e-128
Q9FN04466 Amino acid permease 4 OS= no no 0.972 0.924 0.503 1e-127
Q8GUM3480 Amino acid permease 5 OS= no no 0.979 0.904 0.514 1e-127
Q42400485 Amino acid permease 1 OS= no no 0.975 0.890 0.497 1e-125
P92934481 Amino acid permease 6 OS= no no 0.984 0.906 0.5 1e-121
Q9FKS8446 Lysine histidine transpor no no 0.857 0.852 0.286 4e-38
Q9LRB5441 Lysine histidine transpor no no 0.828 0.832 0.304 3e-36
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function desciption
 Score =  509 bits (1312), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/438 (58%), Positives = 323/438 (73%), Gaps = 4/438 (0%)

Query: 8   GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPD 67
           GTLWTAVAHIITGVIG+GVLSLAW+ A+LGWIAGP A++ FA VTL + FLL DC+R PD
Sbjct: 28  GTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLSDCYRFPD 87

Query: 68  PEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH 127
           P  GP R  SY +AV + LGK N   C   V++ L+G  IAYT+  A   RAI KSNCYH
Sbjct: 88  PNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYH 147

Query: 128 REGHEAACEYSDT--YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGV 185
           R GH A C Y D   Y+M++FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL +
Sbjct: 148 RNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLAL 207

Query: 186 AKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 245
            K+I N  + GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   Q
Sbjct: 208 GKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQ 267

Query: 246 TMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHL 305
           TMKKAST+++   T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HL
Sbjct: 268 TMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHL 327

Query: 306 VGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVV 363
           VGGYQVYSQPIFA  E+ + +K+PEN F+   +  K PL+     R NP+R+C RT+YV+
Sbjct: 328 VGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVL 387

Query: 364 SVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCF 423
             T +A+ FPYFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC 
Sbjct: 388 ITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCL 447

Query: 424 IVSTFGLVGSIQGIISAK 441
           +V    LVGSI G++ AK
Sbjct: 448 LVCLLSLVGSIYGLVGAK 465
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
255586130461 amino acid transporter, putative [Ricinu 0.984 0.945 0.717 0.0
225462048472 PREDICTED: probable amino acid permease 0.984 0.923 0.697 0.0
224146569431 amino acid permease [Populus trichocarpa 0.972 1.0 0.691 0.0
224122284458 amino acid permease [Populus trichocarpa 0.979 0.947 0.671 1e-173
359494348 623 PREDICTED: probable amino acid permease 0.981 0.698 0.639 1e-169
296089993458 unnamed protein product [Vitis vinifera] 0.981 0.949 0.639 1e-169
356569591447 PREDICTED: probable amino acid permease 0.984 0.975 0.658 1e-168
255586132456 amino acid transporter, putative [Ricinu 0.977 0.949 0.652 1e-167
357495243467 Amino acid permease [Medicago truncatula 0.984 0.933 0.639 1e-167
242076156466 hypothetical protein SORBIDRAFT_06g01966 0.984 0.935 0.616 1e-165
>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/436 (71%), Positives = 372/436 (85%)

Query: 8   GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPD 67
           GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPL M+ FA VTL +T+LLCDC+R P 
Sbjct: 26  GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLTMMCFALVTLLSTYLLCDCYRFPH 85

Query: 68  PEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH 127
           PE GP RNRSYL+AVD+ LGK  +W C  FV + LYGT IAYT+TSAISMRAI+KSNCYH
Sbjct: 86  PELGPSRNRSYLQAVDVSLGKKASWICGIFVELSLYGTGIAYTITSAISMRAIRKSNCYH 145

Query: 128 REGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAK 187
           +EGH AACE+SDT YMLIFGA Q+I+SQ PDFHN++ LS++AAVMSF YS IGFGLG+A+
Sbjct: 146 KEGHSAACEFSDTSYMLIFGAFQIIVSQIPDFHNMEWLSILAAVMSFTYSSIGFGLGLAQ 205

Query: 188 VIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 247
           VI NG+ MGS +GVS +++ +K+W ++QALGDIAFAYPYSLIL+EIQDTLKSPP  N+TM
Sbjct: 206 VIENGYAMGSITGVSASSAADKVWNISQALGDIAFAYPYSLILLEIQDTLKSPPTENETM 265

Query: 248 KKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVG 307
           +KAST++++ TT FYL CG FGYAAFG++TPGNLLTGFGFYEPYWLID ANA IV+HLVG
Sbjct: 266 RKASTIALVVTTFFYLCCGAFGYAAFGEDTPGNLLTGFGFYEPYWLIDFANACIVLHLVG 325

Query: 308 GYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTA 367
           GYQVYSQP+FA  EKW  E+ P + F+NN + LK PL+PAF  N  R+CFRT+YVVS TA
Sbjct: 326 GYQVYSQPVFATIEKWFAERHPASRFINNNYSLKLPLLPAFGLNAFRICFRTLYVVSTTA 385

Query: 368 IAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVST 427
           I+M FPYFNQV+G++G + FWPLTIYFPVEMYF+Q NIEAWT KW+MLR FS V F+V+ 
Sbjct: 386 ISMIFPYFNQVIGLLGALNFWPLTIYFPVEMYFRQRNIEAWTIKWIMLRAFSIVVFLVAA 445

Query: 428 FGLVGSIQGIISAKLS 443
             LVGS++G+ISAKLS
Sbjct: 446 IALVGSVEGVISAKLS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146569|ref|XP_002336318.1| amino acid permease [Populus trichocarpa] gi|222834652|gb|EEE73115.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569591|ref|XP_003552982.1| PREDICTED: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information
>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula] Back     alignment and taxonomy information
>gi|242076156|ref|XP_002448014.1| hypothetical protein SORBIDRAFT_06g019660 [Sorghum bicolor] gi|241939197|gb|EES12342.1| hypothetical protein SORBIDRAFT_06g019660 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.979 0.929 0.584 1.6e-143
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.970 0.872 0.527 2.2e-128
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.970 0.903 0.528 8.9e-125
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.972 0.907 0.521 4.6e-121
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.970 0.922 0.504 1.2e-120
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.968 0.893 0.522 2e-120
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.984 0.906 0.5 1.8e-119
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.975 0.890 0.497 6.9e-118
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.683 0.687 0.343 9.9e-52
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.668 0.671 0.313 2.3e-46
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1403 (498.9 bits), Expect = 1.6e-143, P = 1.6e-143
 Identities = 256/438 (58%), Positives = 323/438 (73%)

Query:     8 GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPD 67
             GTLWTAVAHIITGVIG+GVLSLAW+ A+LGWIAGP A++ FA VTL + FLL DC+R PD
Sbjct:    28 GTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLSDCYRFPD 87

Query:    68 PEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH 127
             P  GP R  SY +AV + LGK N   C   V++ L+G  IAYT+  A   RAI KSNCYH
Sbjct:    88 PNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYH 147

Query:   128 REGHEAACEYSDT--YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGV 185
             R GH A C Y D   Y+M++FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL +
Sbjct:   148 RNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLAL 207

Query:   186 AKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 245
              K+I N  + GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   Q
Sbjct:   208 GKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQ 267

Query:   246 TMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHL 305
             TMKKAST+++   T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HL
Sbjct:   268 TMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHL 327

Query:   306 VGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVV 363
             VGGYQVYSQPIFA  E+ + +K+PEN F+   +  K PL+     R NP+R+C RT+YV+
Sbjct:   328 VGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVL 387

Query:   364 SVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCF 423
               T +A+ FPYFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC 
Sbjct:   388 ITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCL 447

Query:   424 IVSTFGLVGSIQGIISAK 441
             +V    LVGSI G++ AK
Sbjct:   448 LVCLLSLVGSIYGLVGAK 465
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FF99AAP7_ARATHNo assigned EC number0.58440.97960.9293yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 3e-89
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-10
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  276 bits (708), Expect = 3e-89
 Identities = 117/437 (26%), Positives = 194/437 (44%), Gaps = 38/437 (8%)

Query: 8   GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPD 67
            + W AV ++I  +IG+GVLSL ++  QLGWI G + +VI   ++L+   LL  C +  D
Sbjct: 3   ISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVD 62

Query: 68  PEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH 127
              G  R +SY +      G        F + V L+G  I+Y + +  ++ AI  S    
Sbjct: 63  KVKGK-RRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDT 121

Query: 128 REGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAK 187
                  C  S  Y+++IFG + + LS  P+   +  LS++AAV S           +  
Sbjct: 122 -------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLY---------IVI 165

Query: 188 VIGNGFVMGSFSGVS----TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 243
           ++ +   +G  +          +  K+  +  A+G I FA+    +L+ IQ+T+KS P  
Sbjct: 166 LVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK 224

Query: 244 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVI 303
            + M K    +II  T+ Y+  G  GY AFG+N  GN+L         WLID+AN  +V+
Sbjct: 225 FKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVL 282

Query: 304 HLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVV 363
           HL+  Y + + PI    E  +  K       +N                LR+  R+  VV
Sbjct: 283 HLLLSYPLQAFPIRQIVENLLFRKG--ASGKHNPKSKL-----------LRVVIRSGLVV 329

Query: 364 SVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRV-FSYVC 422
               IA+S P+    L ++G     PLT   P   + K    +  + + +        +C
Sbjct: 330 ITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVIC 389

Query: 423 FIVSTFGLVGSIQGIIS 439
            ++    +   + G+I 
Sbjct: 390 IVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK10483414 tryptophan permease; Provisional 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.92
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.89
TIGR00814397 stp serine transporter. The HAAAP family includes 99.85
PRK10655438 potE putrescine transporter; Provisional 99.68
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.61
PRK10644445 arginine:agmatin antiporter; Provisional 99.61
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.55
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.54
TIGR00909429 2A0306 amino acid transporter. 99.5
PRK10746461 putative transport protein YifK; Provisional 99.5
PRK10249458 phenylalanine transporter; Provisional 99.49
PRK11021410 putative transporter; Provisional 99.49
PRK10238456 aromatic amino acid transporter; Provisional 99.47
PRK15049499 L-asparagine permease; Provisional 99.45
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.44
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.44
TIGR00913478 2A0310 amino acid permease (yeast). 99.43
PRK10580457 proY putative proline-specific permease; Provision 99.42
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.41
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.41
PRK11387471 S-methylmethionine transporter; Provisional 99.38
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.37
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.35
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.34
PRK10836489 lysine transporter; Provisional 99.31
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.3
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.3
TIGR00911501 2A0308 L-type amino acid transporter. 99.29
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.28
PRK15238496 inner membrane transporter YjeM; Provisional 99.26
TIGR00930 953 2a30 K-Cl cotransporter. 99.2
KOG3832319 consensus Predicted amino acid transporter [Genera 99.11
COG0531466 PotE Amino acid transporters [Amino acid transport 99.1
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.09
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.07
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.96
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.96
PF03845320 Spore_permease: Spore germination protein; InterPr 98.86
COG0833541 LysP Amino acid transporters [Amino acid transport 98.72
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.7
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.45
COG3949349 Uncharacterized membrane protein [Function unknown 98.35
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.33
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.23
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.2
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.14
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.13
PRK11375484 allantoin permease; Provisional 98.11
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.1
PRK12488549 acetate permease; Provisional 98.04
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.03
TIGR00813407 sss transporter, SSS family. have different number 97.9
PRK11017404 codB cytosine permease; Provisional 97.88
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.72
COG1457442 CodB Purine-cytosine permease and related proteins 97.6
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.53
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.46
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.46
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.34
PRK09395551 actP acetate permease; Provisional 97.32
PRK15419502 proline:sodium symporter PutP; Provisional 97.12
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.08
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.95
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.89
COG4147529 DhlC Predicted symporter [General function predict 96.45
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.36
PRK10484523 putative transporter; Provisional 96.31
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.35
PRK15015 701 carbon starvation protein A; Provisional 95.04
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.52
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.21
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.85
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.22
KOG1288 945 consensus Amino acid transporters [Amino acid tran 92.44
COG1966575 CstA Carbon starvation protein, predicted membrane 90.95
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 90.85
PRK00701439 manganese transport protein MntH; Reviewed 90.44
PRK15433439 branched-chain amino acid transport system 2 carri 89.38
PRK15433439 branched-chain amino acid transport system 2 carri 87.28
COG0814415 SdaC Amino acid permeases [Amino acid transport an 86.49
KOG2466572 consensus Uridine permease/thiamine transporter/al 85.93
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-58  Score=446.12  Aligned_cols=403  Identities=37%  Similarity=0.642  Sum_probs=358.9

Q ss_pred             CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427            4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD   83 (443)
Q Consensus         4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~   83 (443)
                      ++|+++|+++.+|.+++++|.|+|+||||+++.||+.|+++++..++++.||..+|.+|.+.++...|+ |+++|.|+++
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~-r~~~Y~dl~~  112 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK-RRYRYPDLGQ  112 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cCCChHHHHH
Confidence            367789999999999999999999999999999999999999999999999999999999998888888 8899999999


Q ss_pred             HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427           84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ  163 (443)
Q Consensus        84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~  163 (443)
                      ++||+++++++...+.+.++|+|+.|++..+|++..+.+..|.+.+      ..+.+.|+++++++.+|++++||+++++
T Consensus       113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~  186 (437)
T KOG1303|consen  113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLS  186 (437)
T ss_pred             HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhH
Confidence            9999999999999999999999999999999999999988776532      2336789999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCcc
Q 013427          164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA  243 (443)
Q Consensus       164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~  243 (443)
                      ++|..+.++++.+..+.+..++.+..+.+..+.+   .++.++..   ..++++|++.|+|.+|..+|+|+++||+|   
T Consensus       187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~---~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p---  257 (437)
T KOG1303|consen  187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG---YLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSP---  257 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccCCcccC---cccCCCCc---chhhhhhheeeeecCCeeeeehHhhcCCc---
Confidence            9999999999988887777776655444222221   22111111   11899999999999999999999999988   


Q ss_pred             ccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccchHHHHHHH
Q 013427          244 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKW  323 (443)
Q Consensus       244 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~~~  323 (443)
                       ++|+|++.+++.+++.+|...++.||++|||+++++++.|++  ++.|+...+++++.+|++.+|++..+|+.+.+|++
T Consensus       258 -~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~  334 (437)
T KOG1303|consen  258 -PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKL  334 (437)
T ss_pred             -hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Confidence             679999999999999999999999999999999999999996  58999999999999999999999999999999999


Q ss_pred             HHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHHHHHHh
Q 013427          324 ICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM  403 (443)
Q Consensus       324 ~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~  403 (443)
                      ...+.++  +.             ++....|.+.|+.+++.+.++|+.+|+|+++++++||....++.+++|+++|++.+
T Consensus       335 ~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~  399 (437)
T KOG1303|consen  335 IGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIK  399 (437)
T ss_pred             hccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8654332  10             12357899999999999999999999999999999999999999999999999998


Q ss_pred             cCCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 013427          404 NIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA  440 (443)
Q Consensus       404 ~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~~~~~  440 (443)
                      |++++..+|+.++.+ .++|++.++...+++++.++.|
T Consensus       400 k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  400 KPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             hhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            889999999999998 7999999999999999998764

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.7
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.62
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.28
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.37
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.93
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.72
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.70  E-value=3.5e-15  Score=149.04  Aligned_cols=366  Identities=10%  Similarity=0.034  Sum_probs=204.2

Q ss_pred             CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427            4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD   83 (443)
Q Consensus         4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~   83 (443)
                      ++|+-+.++..+..+++++|+|++.+|...++.|. .+++..++.++..........|...+. |+.|     ...+..+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-----g~y~~~~   78 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-----GSYAYAR   78 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-----THHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-----CchhhHH
Confidence            35667899999999999999999999999888885 477788888888888888888876543 2222     5566789


Q ss_pred             HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427           84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ  163 (443)
Q Consensus        84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~  163 (443)
                      +.+||+.+++......+.......++....++.+..+.+..     .  .  ......+.+++.++. -....+..|...
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~--~~~~~~~~~~~~~~~-~~in~~g~~~~~  148 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----K--D--PWVLTITCVVVLWIF-VLLNIVGPKMIT  148 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----G--S--HHHHHHHHHHHHHHH-HHHHHHCHHHHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----c--c--cHHHHHHHHHHHHHH-HHHHHhchHHHH
Confidence            99999999999988888877777777777777665433210     0  0  011111111111111 122223344444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCcc
Q 013427          164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA  243 (443)
Q Consensus       164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~  243 (443)
                      .++.+.....+.   ..+...+......++... ..++. .+......++..++....|+|.+........+|+|||   
T Consensus       149 ~~~~~~~~~~i~---~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---  220 (445)
T 3l1l_A          149 RVQAVATVLALI---PIVGIAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---  220 (445)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---
Confidence            444433333322   211122111111111100 01111 1111224567788999999999999999999999998   


Q ss_pred             ccchhhhhHHHHHHHHHHHHhhhhhhhccccCccc----ccccccccccCchHHHHHHHHHHHHHhHhhccccccchHHH
Q 013427          244 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP----GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH  319 (443)
Q Consensus       244 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~  319 (443)
                      +|+.+|++..+..++.++|....+......+.+..    +....-+.....++...+..+...+..+.+.--......+.
T Consensus       221 ~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~  300 (445)
T 3l1l_A          221 KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT  300 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999887766555543221    11111110001234445555555666555543333333333


Q ss_pred             HHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhC----CChHHHHHHhhhhhhhhhHhhh
Q 013427          320 FEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF----PYFNQVLGVIGGVIFWPLTIYF  394 (443)
Q Consensus       320 ~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~v----p~~~~v~~l~Gs~~~~~l~~il  394 (443)
                      +..+-.. ..|+  +..+.++.+         .+.+-.+....+.....+....    ..++.+.++.+  .+..+.|.+
T Consensus       301 ~~~~a~dg~lP~--~~~~~~~~~---------~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~  367 (445)
T 3l1l_A          301 AKAAADDGLFPP--IFARVNKAG---------TPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLY  367 (445)
T ss_dssp             HHHHHHTTSSCG--GGGCCCTTC---------CCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHhCCCCcH--HHHhcCCCC---------CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHH
Confidence            3333222 1231  222211111         2333333322222221211112    23566666655  345788999


Q ss_pred             hhHHHHHHhcCCc
Q 013427          395 PVEMYFKQMNIEA  407 (443)
Q Consensus       395 P~l~~~~~~~~~~  407 (443)
                      +.+.+++.+++++
T Consensus       368 ~~~~~~~~r~~~~  380 (445)
T 3l1l_A          368 TCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHSSSS
T ss_pred             HHHHHHHHhhcCc
Confidence            9998888766544
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 85.92
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.92  E-value=13  Score=34.28  Aligned_cols=106  Identities=10%  Similarity=0.011  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHhhhhhhhhh-hHHHHHHhcCcc----HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427            9 TLWTAVAHIITGVIGSGVL-SLAWSMAQLGWI----AGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD   83 (443)
Q Consensus         9 s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~----~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~   83 (443)
                      +-.+-++..++..+|.|=+ =.||-..+-|-.    +=.+.++++++=-.+-=..+.|..++.       ....+..+..
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g-------~i~~~~~i~~   78 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ-------GHGTTPAIFY   78 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------TCCSHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-------cccHHHHHHH
Confidence            4456778888999998644 489997665532    222233333333333333444443321       4457777777


Q ss_pred             HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHH
Q 013427           84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ  121 (443)
Q Consensus        84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~  121 (443)
                      ...+.+.-..+.....+.++..++-|.+..+-.+.-+.
T Consensus        79 ~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~  116 (509)
T d2a65a1          79 LLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAI  116 (509)
T ss_dssp             HHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554322333444455555555556666555544433