Citrus Sinensis ID: 013431
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WWW9 | 558 | D-xylose-proton symporter | yes | no | 0.950 | 0.754 | 0.816 | 0.0 | |
| Q6AWX0 | 503 | D-xylose-proton symporter | no | no | 0.923 | 0.813 | 0.623 | 1e-139 | |
| Q8L6Z8 | 503 | D-xylose-proton symporter | no | no | 0.914 | 0.805 | 0.595 | 1e-132 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.866 | 0.840 | 0.350 | 3e-56 | |
| O52733 | 457 | D-xylose-proton symporter | no | no | 0.873 | 0.846 | 0.328 | 2e-54 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.873 | 0.818 | 0.325 | 3e-53 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.866 | 0.832 | 0.339 | 9e-53 | |
| Q8VZR6 | 509 | Inositol transporter 1 OS | no | no | 0.839 | 0.730 | 0.357 | 2e-52 | |
| Q9XIH7 | 511 | Putative polyol transport | no | no | 0.889 | 0.771 | 0.327 | 9e-52 | |
| P0AEP1 | 464 | Galactose-proton symporte | N/A | no | 0.878 | 0.838 | 0.329 | 2e-51 |
| >sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/426 (81%), Positives = 380/426 (89%), Gaps = 5/426 (1%)
Query: 23 GSTFRLFS-----LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 77
G+T+ FS L + GSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+L T A
Sbjct: 133 GTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCA 192
Query: 78 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 137
P L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG+ VGS
Sbjct: 193 PDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGFSVGS 252
Query: 138 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 197
FQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+A+ AL
Sbjct: 253 FQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLALS 312
Query: 198 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257
KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGLVLFQQI
Sbjct: 313 KLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQI 372
Query: 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 317
TGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRPLLIGGV
Sbjct: 373 TGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGV 432
Query: 318 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 377
GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI
Sbjct: 433 SGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 492
Query: 378 SLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437
SLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKGLSLEEI
Sbjct: 493 SLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEI 552
Query: 438 ESKILK 443
ESKILK
Sbjct: 553 ESKILK 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/412 (62%), Positives = 318/412 (77%), Gaps = 3/412 (0%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90
L GSLYGAL GSI+ ++IAD +GR++ELI+AA+LY +GAL TA AP VL++GR++Y
Sbjct: 95 LVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIY 154
Query: 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
G+ +GLAMH AP+YIAET PS IRG L+SLKE FIVLG++ GY +GS +N GWRYMY
Sbjct: 155 GVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMY 214
Query: 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
S PLA++MGIGMW LP SPRWLLLR +QGKG+++ +E AI +L LR D +E
Sbjct: 215 ATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAE 274
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
Q+ + L L ++ E E +F E+FQG LKA IIGGGLVLFQQITGQPSVLYYA I
Sbjct: 275 -QVNEILAEL--TFVGEDKEVTFGELFQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSI 331
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330
LQ+AGFSAA DATRVS+++G+ KL+MT +AV +D LGRRPLL+GGV G+ +SL LL +Y
Sbjct: 332 LQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSY 391
Query: 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
Y P+VAV ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRG+SLAVL NFG+NA+
Sbjct: 392 YLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLVNFGANAL 451
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 442
VTFAFSPLKELLGA +F F I L+++FI VPETKGL+LEEIE+K L
Sbjct: 452 VTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVPETKGLTLEEIEAKCL 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/408 (59%), Positives = 306/408 (75%), Gaps = 3/408 (0%)
Query: 35 GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94
GSLYGAL+GSI+ +S+AD +GR++ELI+AA LY +GA+ T AP +L++GR+ YG+GI
Sbjct: 99 GSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGI 158
Query: 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA 154
GL MH AP+YIAET PSQIRG +ISLKE VLG++ GY +GS I + GWRYMY
Sbjct: 159 GLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATIL 218
Query: 155 PLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIE 214
P ++MG GM LP SPRWLLLRA+QG+G+ + ++ AI +L +LR D +E Q+
Sbjct: 219 PFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAE-QVN 277
Query: 215 DTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA 274
+ L L S E E +F E+F+G LKA I GGLVLFQQITGQPSVLYYA ILQ+A
Sbjct: 278 EILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTA 335
Query: 275 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL 334
GFSAAADATR+S+++G+ KLVMT ++V +D +GRRPLL+ GV G+ +SL LL +YY
Sbjct: 336 GFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMFY 395
Query: 335 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 394
P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRGISLAVL NFG+NA+VTFA
Sbjct: 396 KNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFA 455
Query: 395 FSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 442
FSPLKELLGA +F F I +++ FI VPETKGL+LEEIE+K L
Sbjct: 456 FSPLKELLGAGILFCAFGVICVVSLFFIYYIVPETKGLTLEEIEAKCL 503
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Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 222/408 (54%), Gaps = 24/408 (5%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96
L GA+LGS + D GRK+ ++ AA+L+ +G L A AP GV+++ R++ GL +G
Sbjct: 53 LVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGT 112
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
+ PLY++E P RG L SL +L I +GILL Y V +A WR+M GL+A
Sbjct: 113 STTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADA-EAWRWMLGLAAVP 171
Query: 157 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
+LL+ IG+ +P SPRWL +E K + I L KLR G K +++I D
Sbjct: 172 SLLLLIGILFMPESPRWLFTNG-------EESKAKKI--LEKLR----GTKDIDQEIHDI 218
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 276
+++ EG E+F A I G GL QQ G +++YYA + GF
Sbjct: 219 ------KEAEKQDEGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF 272
Query: 277 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 336
+A +V IG ++MT +A+ +D +GR+PLL+ G G+ +SL++L+
Sbjct: 273 GNSASILG-TVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDN 331
Query: 337 FPLVAVSALL---LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 393
P + + ++ +++ + +S+GP+ W+M+ E+FPL RG G ++ L IV+
Sbjct: 332 TPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSL 391
Query: 394 AFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 441
+ L E +G +FL++AAI +A LF+ V ETKG SLEEIE +
Sbjct: 392 TYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDL 439
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 228/408 (55%), Gaps = 21/408 (5%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96
L GA+LG+ ++ +D GR++ L+++A+++ +GAL +A++P L++ R++ G+ +G
Sbjct: 53 LLGAILGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGA 112
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
A P Y+AE PS RGT+ SL +L ++ GILL Y GWR+M G +A
Sbjct: 113 ASALIPTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIP 172
Query: 157 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
A L+ +G LP SPR+L+ G L E + + + K + ++++ Q
Sbjct: 173 AALLFLGGLILPESPRFLV-----KSGHLDEAR-HVLDTMNKHDQVAVNKEINDIQESAK 226
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 276
+VS G + E+F + IIG GL +FQQ+ G +VLYYA I GF
Sbjct: 227 IVS-----------GGWSELFGKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGF 275
Query: 277 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 336
+A A + IG+F +++T IAVA +D + R+ ++ G G+ +SL ++S K GG
Sbjct: 276 GVSA-ALLAHIGIGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGG 334
Query: 337 ---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 393
+++V AL +Y+ + ++GP+ W+M+ E+FPL RG G S A + N+ +N IV+
Sbjct: 335 SQTAAIISVIALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSL 394
Query: 394 AFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 441
F L + G ++F+ + + F ++ F+ + V ET+ SLE+IE+ +
Sbjct: 395 TFPSLLDFFGTGSLFIGYGILCFASIWFVQKKVFETRNRSLEDIEATL 442
|
Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 226/412 (54%), Gaps = 25/412 (6%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96
L+GA LG++ ++DF GR++ ++ AV++ + + +AP + V+++ R + G+ +G
Sbjct: 60 LFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGG 119
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG----WRYMYGL 152
A P Y+AE P + RG +++ EL IV G LL + + +G WR+M +
Sbjct: 120 ASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVI 179
Query: 153 SAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQ 212
++ AL + GM +P SPRWL+ KG KE A+ L K+R +K + +
Sbjct: 180 ASLPALFLFFGMIRMPESPRWLV-----SKGR----KEDALRVLKKIR----DEKRAAAE 226
Query: 213 IEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI-IGGGLVLFQQITGQPSVLYYAGPIL 271
+++ + K EK+ L V P ++ + IG G+ + QQITG S++YY IL
Sbjct: 227 LQEIEFAFKKEDQLEKATFKDLSV---PWVRRIVFIGLGIAIVQQITGVNSIMYYGTEIL 283
Query: 272 QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 331
+++GF A A ++ GV ++ T++ + + +GRRP+L+ G+ G +LLL+ +
Sbjct: 284 RNSGFQTEA-ALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIFS 342
Query: 332 KILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 388
+L G P V +S + ++ Q + P++WLM+SEIFPLR RG G+ + V + N
Sbjct: 343 LVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLWMVN 402
Query: 389 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESK 440
V+F F L +G F +F + +VLF+ R +PETKGLSLE++E
Sbjct: 403 FAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQLEEN 454
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 221/409 (54%), Gaps = 25/409 (6%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96
L GA+ GS L + +D GR++ + + ++++ +GAL A++ +G+L+ R++ GL +G
Sbjct: 54 LLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGG 113
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
+ P+Y++E P++IRGTL ++ L IV GILL Y V ++ WR+M GL+A
Sbjct: 114 STALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIV-NYLFTPFEAWRWMVGLAAVP 172
Query: 157 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
A+L+ IG+ +P SPRWL+ R GS +E RR + IE
Sbjct: 173 AVLLLIGIAFMPESPRWLVKR-----GSEEE------------ARRIMNITHDPKDIEME 215
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAG 275
L +K ++K + L V + ++ +IG GL +FQQ G +V+YYA I AG
Sbjct: 216 LAEMKQGEAEKKE--TTLGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAG 273
Query: 276 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 335
+A A ++ IG+ ++M A+ +D +GR+ LLI G GI LSL LS LG
Sbjct: 274 LGTSASALG-TMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLG 332
Query: 336 ---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 392
+ V L +Y+ YQ ++GP+ W+++ E+FP + RG L +N IV+
Sbjct: 333 LSASTAWMTVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVS 392
Query: 393 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 441
F + +G +F++F+ I L+ F VPETKG SLEEIE+ +
Sbjct: 393 LVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIEASL 441
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 216/400 (54%), Gaps = 28/400 (7%)
Query: 50 IADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 109
I D+ GRK+ + A V++A GA+ A AP VL+ GRLL GLG+G+A AP+YIAE
Sbjct: 94 INDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEAS 153
Query: 110 PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 169
PS++RG L+S L I G L Y V S G WR+M G+S A++ I M +P
Sbjct: 154 PSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPE 213
Query: 170 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 229
SPRWL ++ K +AI L + ++ED + L ++ +EK
Sbjct: 214 SPRWLFMK---------NRKAEAIQVLAR--------TYDISRLEDEIDHLSAAEEEEKQ 256
Query: 230 EGS---FLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV 285
+L+VF+ L+ AF+ G GL FQQ TG +V+YY+ I+Q AGF + A +
Sbjct: 257 RKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFL 316
Query: 286 SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS-AYYKIL------GGFP 338
S+++ T + + +D GR+ L + + G+ +SLL+LS +++K G +
Sbjct: 317 SLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYG 376
Query: 339 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398
+AV L LY+ + GP+ W + SEI+P + RG ++ N+ SN IV F +
Sbjct: 377 WLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTI 436
Query: 399 KELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 438
E G FL+ A IA LAV+F++ VPET+GL+ E+E
Sbjct: 437 AEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVE 476
|
Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH7|PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 218/418 (52%), Gaps = 24/418 (5%)
Query: 40 ALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 99
+L+GS +D+LGR+ +++A + GAL +A ++VGR + G+G+G AM
Sbjct: 76 SLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMM 135
Query: 100 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYGLSAPLA 157
AP+Y AE P+ RG L S E+FI +GILLGY F ++ GWR+M G+ A +
Sbjct: 136 IAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPS 195
Query: 158 LLMGIGMWSLPPSPRWLLLRAVQGKG-----SLQEYKEQAISALGKLRRRP--PGDKLSE 210
+ + IG+ ++P SPRWL+L+ G KE+AIS L ++R P D
Sbjct: 196 VFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIPDD---- 251
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG-GLVLFQQITGQPSVLYYAGP 269
+ D ++ + + + K L V P+++ +I G+ QQ +G +V+ Y+
Sbjct: 252 --MTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPT 309
Query: 270 ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 329
I AG + D +V +GV K + + VD GRR LL+ + G+ LSL L
Sbjct: 310 IFSKAGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLSLTALGT 369
Query: 330 YYKILGGFP--------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 381
++ P +AV+ ++ +V + I GP++W+ SEIFP+R R +G SL V
Sbjct: 370 SLTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGV 429
Query: 382 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIES 439
+ N + I+ F L + L FLLFA +A A +F +PET+G+ LEE+E+
Sbjct: 430 MLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLEEMET 487
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0AEP1|GALP_ECOLI Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 226/410 (55%), Gaps = 21/410 (5%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96
++GA +G++ ++ LGRK+ L+I A+L+ G+L +A AP + VL++ R+L GL +G+
Sbjct: 62 MFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGV 121
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
A + APLY++E P +IRG++IS+ +L I +GI LG ++ + G WR+M G+
Sbjct: 122 ASYTAPLYLSEIAPEKIRGSMISMYQLMITIGI-LGAYLSDTAFSYTGAWRWMLGVIIIP 180
Query: 157 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
A+L+ IG++ LP SPRW + + A L +LR K +I ++
Sbjct: 181 AILLLIGVFFLPDSPRWF---------AAKRRFVDAERVLLRLRDTSAEAKRELDEIRES 231
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 276
L +S + K +F +A +G L + QQ TG ++YYA I + AG+
Sbjct: 232 LQVKQSGWALFKENSNF--------RRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGY 283
Query: 277 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 336
+ + +V++G+ ++ T+IA+ VD GR+P L G +A + +L I
Sbjct: 284 TNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIH 343
Query: 337 FP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 393
P A++ LL+++ + +S GP+ W++ SEI PL+ R GI+ + TN+ +N IV
Sbjct: 344 SPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGA 403
Query: 394 AFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 443
F + LG N F ++AA+ L +L + VPETK +SLE IE ++K
Sbjct: 404 TFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMK 453
|
Uptake of galactose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Escherichia coli (strain K12) (taxid: 83333) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| 356542274 | 560 | PREDICTED: D-xylose-proton symporter-lik | 0.932 | 0.737 | 0.830 | 0.0 | |
| 356538970 | 552 | PREDICTED: D-xylose-proton symporter-lik | 0.932 | 0.748 | 0.830 | 0.0 | |
| 297796853 | 559 | hypothetical protein ARALYDRAFT_919128 [ | 0.950 | 0.753 | 0.816 | 0.0 | |
| 110740547 | 558 | D-xylose-H+ symporter - like protein [Ar | 0.950 | 0.754 | 0.816 | 0.0 | |
| 42568650 | 558 | D-xylose-proton symporter-like 3 [Arabid | 0.950 | 0.754 | 0.816 | 0.0 | |
| 388498682 | 563 | unknown [Lotus japonicus] | 0.932 | 0.733 | 0.825 | 0.0 | |
| 222424010 | 415 | AT5G59250 [Arabidopsis thaliana] | 0.932 | 0.995 | 0.830 | 0.0 | |
| 449455084 | 585 | PREDICTED: D-xylose-proton symporter-lik | 0.932 | 0.705 | 0.835 | 0.0 | |
| 77999788 | 552 | putative sugar transporter [Nicotiana la | 0.950 | 0.762 | 0.814 | 0.0 | |
| 255558992 | 505 | sugar transporter, putative [Ricinus com | 0.932 | 0.817 | 0.869 | 0.0 |
| >gi|356542274|ref|XP_003539594.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/413 (83%), Positives = 382/413 (92%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90
L + GSLYGALLGS++ ++IADFLGRK++LI AA+LY G + TAYAP LGVLL GRL+Y
Sbjct: 148 LVVSGSLYGALLGSLVAFAIADFLGRKKQLITAALLYLFGGVITAYAPELGVLLAGRLIY 207
Query: 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
GLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLGILLGYFVGSF I VGGWR+MY
Sbjct: 208 GLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFLIETVGGWRFMY 267
Query: 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
G SAP+A+LMG+GMW+LP SPRWLLLRAVQGKGS Q+ KEQAI++L KLR RPPGDK SE
Sbjct: 268 GFSAPVAVLMGLGMWTLPNSPRWLLLRAVQGKGSFQDLKEQAIASLSKLRGRPPGDKESE 327
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
+QIE+TLVSLKS Y D++SEG+FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI
Sbjct: 328 KQIEETLVSLKSVYADQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 387
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330
LQSAGFSAA+DAT+VSVVIG+FKL+MTWIAV KVDDLGRRPLLIGGV GIALSL+LLSAY
Sbjct: 388 LQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAY 447
Query: 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
YK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE+FPLRTRG+GISLAVLTNF SNA+
Sbjct: 448 YKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEVFPLRTRGKGISLAVLTNFASNAV 507
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 443
VTFAFSPLKE LGAEN+FLLF AIA L++LFI+ +VPETKG+SLE+IESKILK
Sbjct: 508 VTFAFSPLKEFLGAENLFLLFGAIATLSLLFIIFSVPETKGMSLEDIESKILK 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538970|ref|XP_003537973.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/413 (83%), Positives = 381/413 (92%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90
L + GSLYGALLGS++ ++IADFLGRK++LI AA+LY G + TAYAP LGVLL GRLLY
Sbjct: 140 LVVSGSLYGALLGSLVAFAIADFLGRKKQLITAALLYLFGGVITAYAPELGVLLAGRLLY 199
Query: 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
GLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLGILLGYFVGSF I VGGWR+MY
Sbjct: 200 GLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFLIETVGGWRFMY 259
Query: 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
G SAP+A+LMG+GM +LP SPRWLLLRAVQGKGS Q+ KE+AI +L KLR RPPGDK SE
Sbjct: 260 GFSAPVAVLMGLGMLTLPNSPRWLLLRAVQGKGSFQDLKEKAIFSLSKLRGRPPGDKESE 319
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
RQ+E+TLVSLKS+Y D++SEG+FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI
Sbjct: 320 RQVEETLVSLKSAYADKESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 379
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330
LQSAGFSAA+DAT+VSVVIG+FKL+MTWIAV KVDDLGRRPLLIGGV GIALSL+LLSAY
Sbjct: 380 LQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAY 439
Query: 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
YK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE+FPLRTRG+GISLAVLTNF SNA+
Sbjct: 440 YKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEVFPLRTRGKGISLAVLTNFASNAV 499
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 443
VTFAFSPLKE LGAEN+FLLF AIA L++LFI+ +VPETKGLSLE+IESKILK
Sbjct: 500 VTFAFSPLKEFLGAENLFLLFGAIAILSLLFIIFSVPETKGLSLEDIESKILK 552
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796853|ref|XP_002866311.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] gi|297312146|gb|EFH42570.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/426 (81%), Positives = 380/426 (89%), Gaps = 5/426 (1%)
Query: 23 GSTFRLFS-----LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 77
G+T+ FS L + GSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+L T A
Sbjct: 134 GTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCA 193
Query: 78 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 137
P L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG+ VGS
Sbjct: 194 PDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGFSVGS 253
Query: 138 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 197
FQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+A+ AL
Sbjct: 254 FQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLALS 313
Query: 198 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257
KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGLVLFQQI
Sbjct: 314 KLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQI 373
Query: 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 317
TGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRPLLIGGV
Sbjct: 374 TGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGV 433
Query: 318 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 377
GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI
Sbjct: 434 SGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493
Query: 378 SLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437
SLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKGLSLEEI
Sbjct: 494 SLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEI 553
Query: 438 ESKILK 443
ESKILK
Sbjct: 554 ESKILK 559
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740547|dbj|BAE98379.1| D-xylose-H+ symporter - like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/426 (81%), Positives = 380/426 (89%), Gaps = 5/426 (1%)
Query: 23 GSTFRLFS-----LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 77
G+T+ FS L + GSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+L T A
Sbjct: 133 GTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCA 192
Query: 78 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 137
P L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG+ VGS
Sbjct: 193 PDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGFSVGS 252
Query: 138 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 197
FQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+A+ AL
Sbjct: 253 FQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLALS 312
Query: 198 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257
KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGLVLFQQI
Sbjct: 313 KLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQI 372
Query: 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 317
TGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRPLLIGGV
Sbjct: 373 TGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGV 432
Query: 318 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 377
GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI
Sbjct: 433 SGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 492
Query: 378 SLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437
SLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKGLSLEEI
Sbjct: 493 SLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEI 552
Query: 438 ESKILK 443
ESKILK
Sbjct: 553 ESKILK 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568650|ref|NP_200733.2| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] gi|117940085|sp|Q0WWW9.2|XYLL3_ARATH RecName: Full=D-xylose-proton symporter-like 3, chloroplastic; Flags: Precursor gi|9759246|dbj|BAB09770.1| sugar transporter-like protein [Arabidopsis thaliana] gi|51536478|gb|AAU05477.1| At5g59250 [Arabidopsis thaliana] gi|56381949|gb|AAV85693.1| At5g59250 [Arabidopsis thaliana] gi|332009779|gb|AED97162.1| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/426 (81%), Positives = 380/426 (89%), Gaps = 5/426 (1%)
Query: 23 GSTFRLFS-----LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 77
G+T+ FS L + GSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+L T A
Sbjct: 133 GTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCA 192
Query: 78 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 137
P L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG+ VGS
Sbjct: 193 PDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGFSVGS 252
Query: 138 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 197
FQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+A+ AL
Sbjct: 253 FQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLALS 312
Query: 198 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257
KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGLVLFQQI
Sbjct: 313 KLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQI 372
Query: 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 317
TGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRPLLIGGV
Sbjct: 373 TGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGV 432
Query: 318 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 377
GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI
Sbjct: 433 SGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 492
Query: 378 SLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437
SLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKGLSLEEI
Sbjct: 493 SLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEI 552
Query: 438 ESKILK 443
ESKILK
Sbjct: 553 ESKILK 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388498682|gb|AFK37407.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/413 (82%), Positives = 378/413 (91%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90
L + GSLYGALLGSIL +++ADFLGRKR+LI+AA+LY LG TA AP L VLL GRLLY
Sbjct: 151 LVVSGSLYGALLGSILAFAVADFLGRKRQLIVAALLYILGGAITAAAPELNVLLAGRLLY 210
Query: 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
GLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLGIL GYFVGSFQI++VGGWR+MY
Sbjct: 211 GLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILGGYFVGSFQISSVGGWRFMY 270
Query: 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
G SAP+A+LMG+GMW+LP SPRWLLL+AVQGKGS Q+ KE+AI +L KLR RPPGDK SE
Sbjct: 271 GFSAPVAVLMGLGMWTLPASPRWLLLKAVQGKGSFQDLKEKAIFSLSKLRGRPPGDKESE 330
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
RQIE+TLVSLKS+Y D++SEG+FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG I
Sbjct: 331 RQIEETLVSLKSAYKDQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGSI 390
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330
LQSAGFSAA+DAT+VSVVIG+FKL MTW+AV KVDDLGRRPLLI GV GI LSL LLSAY
Sbjct: 391 LQSAGFSAASDATKVSVVIGLFKLQMTWVAVLKVDDLGRRPLLIAGVSGIGLSLGLLSAY 450
Query: 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
YK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE FP+RTRGRGISLAVLTNF SNA+
Sbjct: 451 YKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSETFPIRTRGRGISLAVLTNFASNAV 510
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 443
VTFAFSPLKELLGAEN+FLLF AI+ +A+LF++ +VPETKGLSLEEIESKILK
Sbjct: 511 VTFAFSPLKELLGAENLFLLFGAISLVALLFVIFSVPETKGLSLEEIESKILK 563
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222424010|dbj|BAH19966.1| AT5G59250 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/413 (83%), Positives = 374/413 (90%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90
L + GSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+L T AP L +LLVGRLLY
Sbjct: 3 LVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLY 62
Query: 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
G GIGLAMHGAPLYIAETCPS+IRGTLISLKELFIVLGILLG+ VGSFQI+ VGGWRYMY
Sbjct: 63 GFGIGLAMHGAPLYIAETCPSRIRGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMY 122
Query: 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
G P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+A+ AL KLR RPPGDK+SE
Sbjct: 123 GFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISE 182
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGLVLFQQITGQPSVLYYAG I
Sbjct: 183 KLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSI 242
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330
LQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRPLLIGGV GIALSL LLSAY
Sbjct: 243 LQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAY 302
Query: 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
YK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI
Sbjct: 303 YKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 362
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 443
VTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKGLSLEEIESKILK
Sbjct: 363 VTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEIESKILK 415
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455084|ref|XP_004145283.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] gi|449470902|ref|XP_004153144.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/413 (83%), Positives = 381/413 (92%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90
L + GSLYGALLGS+LVY IADFLGR+RELIIAA LYA+G+LTTAY+P LG LL GRLLY
Sbjct: 173 LVVSGSLYGALLGSLLVYPIADFLGRRRELIIAAGLYAIGSLTTAYSPDLGFLLAGRLLY 232
Query: 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
GLGIGLAMHGAPLYIAETCPS+IRGTL+SLKELFIVLGIL+GY GS QINAVGGWRYMY
Sbjct: 233 GLGIGLAMHGAPLYIAETCPSKIRGTLVSLKELFIVLGILMGYLFGSLQINAVGGWRYMY 292
Query: 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
GLSAP+A +MG+GMW LPPSPRWLLLRA QGK Q+ KE+AI+AL KLR RPPGDK+SE
Sbjct: 293 GLSAPVAFMMGLGMWLLPPSPRWLLLRAAQGKAPSQDSKEEAIAALSKLRGRPPGDKVSE 352
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
+QIE+T +SLKS+Y++++SEGS EV QGP+LKAFIIGGGLVLFQQITGQPSVLYYAGPI
Sbjct: 353 KQIEETFLSLKSAYSEQESEGSIWEVLQGPSLKAFIIGGGLVLFQQITGQPSVLYYAGPI 412
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330
LQ+AGF+AA DATRVSVVIGVFKL+MTW+AV KVDDLGRRPLLIGGV GIALSLLLLSAY
Sbjct: 413 LQNAGFAAATDATRVSVVIGVFKLLMTWVAVLKVDDLGRRPLLIGGVSGIALSLLLLSAY 472
Query: 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
YK LGGFP+VAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRG+GISLAVLTNFGSNAI
Sbjct: 473 YKFLGGFPIVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFGSNAI 532
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 443
VTFAFSPLKELLGAEN+FLLF AIA L++LF+V VPETKGLSLE+IESKILK
Sbjct: 533 VTFAFSPLKELLGAENLFLLFGAIALLSLLFVVLKVPETKGLSLEDIESKILK 585
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77999788|gb|ABB17074.1| putative sugar transporter [Nicotiana langsdorffii x Nicotiana sanderae] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/426 (81%), Positives = 384/426 (90%), Gaps = 5/426 (1%)
Query: 23 GSTFRLFS-----LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 77
G+T+ FS L + GSLYGAL GSIL Y ADFLGR+RELIIAA+LYA G TAYA
Sbjct: 127 GTTWYNFSAVQLGLVVSGSLYGALFGSILAYPFADFLGRRRELIIAALLYAAGGSLTAYA 186
Query: 78 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 137
PGLG LL+GRL+YGLGIGLAMHGAPLYIAETCP QIRGTL+SLKEL IVLGILLGYFVGS
Sbjct: 187 PGLGALLLGRLVYGLGIGLAMHGAPLYIAETCPPQIRGTLVSLKELAIVLGILLGYFVGS 246
Query: 138 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 197
++IN VGGWRYM+GLSAP+ALLMG+GMWSLPPSPRWLLLRA+Q KG LQEYKE+A+ AL
Sbjct: 247 YEINVVGGWRYMFGLSAPIALLMGLGMWSLPPSPRWLLLRAIQSKGPLQEYKEKAMGALS 306
Query: 198 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257
KLR RP GDK+SE+QIEDT++SLK++Y+DE++EG+FLEVFQGP+LKAFIIGGGLVLFQQI
Sbjct: 307 KLRGRPAGDKVSEKQIEDTIISLKTAYSDEEAEGNFLEVFQGPSLKAFIIGGGLVLFQQI 366
Query: 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 317
TGQPSVLYYAG ILQSAGFSAAADA RVSVVIG+FK +MT +AV K DDLGRRPLLIGGV
Sbjct: 367 TGQPSVLYYAGSILQSAGFSAAADAARVSVVIGIFKSLMTAVAVLKADDLGRRPLLIGGV 426
Query: 318 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 377
GIALSL LLSAYYK LG FP VAV+ALLLYVGCYQISFGPISWLMVSEIFPLRTRG+GI
Sbjct: 427 SGIALSLFLLSAYYKFLGSFPFVAVAALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGI 486
Query: 378 SLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437
SLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF AIA L++LF+V +VPETKGLSLEEI
Sbjct: 487 SLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGAIALLSLLFVVTSVPETKGLSLEEI 546
Query: 438 ESKILK 443
ESKILK
Sbjct: 547 ESKILK 552
|
Source: Nicotiana langsdorffii x Nicotiana sanderae Species: Nicotiana langsdorffii x Nicotiana sanderae Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558992|ref|XP_002520519.1| sugar transporter, putative [Ricinus communis] gi|223540361|gb|EEF41932.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/413 (86%), Positives = 387/413 (93%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90
L + GSLYGALLGS+LVY IADFLGR+RELIIAAVLY LG L TAYAP LG+LL GRLLY
Sbjct: 93 LVVSGSLYGALLGSLLVYPIADFLGRRRELIIAAVLYMLGGLITAYAPSLGILLGGRLLY 152
Query: 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL+GYFVGSF+I+AVGGWRYMY
Sbjct: 153 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILMGYFVGSFEISAVGGWRYMY 212
Query: 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
GL AP+AL+MG+GM SLPPSPRWLLLRAVQG+ SLQEYKE+A+ AL KLR RP GDK SE
Sbjct: 213 GLGAPIALIMGLGMLSLPPSPRWLLLRAVQGRASLQEYKEKAVLALSKLRGRPLGDKESE 272
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
+QIEDTLVSLKS+Y++E+SEGS LEVFQGP+LKAFIIGGGLVLFQQITGQPSVLYYAGPI
Sbjct: 273 KQIEDTLVSLKSAYSEEESEGSILEVFQGPSLKAFIIGGGLVLFQQITGQPSVLYYAGPI 332
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330
LQSAGFSAAADATRVSV+IG+FKLVMTWIAV KVDDLGRRPLLIGGV GIALSL LLSAY
Sbjct: 333 LQSAGFSAAADATRVSVIIGLFKLVMTWIAVLKVDDLGRRPLLIGGVGGIALSLFLLSAY 392
Query: 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
YK+LGGFP+VAV+ALLLYVG YQISFGPISWLMVSEIFPLRTRG+GISLAVLTNFGSNAI
Sbjct: 393 YKVLGGFPVVAVAALLLYVGSYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFGSNAI 452
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 443
VTFAFSPLKELLGAEN+FLLF AIA LA+LF + VPETKGLSLEEIESKILK
Sbjct: 453 VTFAFSPLKELLGAENLFLLFGAIALLALLFAIVYVPETKGLSLEEIESKILK 505
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| TAIR|locus:2168494 | 558 | AT5G59250 [Arabidopsis thalian | 0.932 | 0.740 | 0.687 | 8.9e-141 | |
| TAIR|locus:2148201 | 503 | AT5G17010 [Arabidopsis thalian | 0.923 | 0.813 | 0.519 | 5.6e-100 | |
| TAIR|locus:2097780 | 503 | VGT1 "vacuolar glucose transpo | 0.914 | 0.805 | 0.497 | 2.3e-94 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.869 | 0.831 | 0.325 | 4.4e-45 | |
| MGI|MGI:3052471 | 622 | Slc2a12 "solute carrier family | 0.589 | 0.419 | 0.329 | 3.9e-40 | |
| UNIPROTKB|F1MIV2 | 621 | SLC2A12 "Solute carrier family | 0.589 | 0.420 | 0.329 | 5.3e-40 | |
| UNIPROTKB|Q5J316 | 621 | SLC2A12 "Solute carrier family | 0.589 | 0.420 | 0.322 | 1.5e-39 | |
| UNIPROTKB|F1P4J7 | 561 | SLC2A12 "Uncharacterized prote | 0.586 | 0.463 | 0.310 | 1.7e-39 | |
| UNIPROTKB|Q8TD20 | 617 | SLC2A12 "Solute carrier family | 0.584 | 0.419 | 0.321 | 6.7e-39 | |
| RGD|1310175 | 621 | Slc2a12 "solute carrier family | 0.589 | 0.420 | 0.329 | 4.1e-38 |
| TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
Identities = 284/413 (68%), Positives = 306/413 (74%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 90
L + GSLYGALLGSI VY +ADFLGR+RELII
Sbjct: 146 LVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLY 205
Query: 91 XXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG+ VGSFQI+ VGGWRYMY
Sbjct: 206 GFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMY 265
Query: 151 GLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
G P+ALLMG+GM AVQGKG LQEYKE+A+ AL KLR RPPGDK+SE
Sbjct: 266 GFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISE 325
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGLVLFQQITGQPSVLYYAG I
Sbjct: 326 KLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSI 385
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXX 330
LQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRPLLIGGV
Sbjct: 386 LQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAY 445
Query: 331 XXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
GFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI
Sbjct: 446 YKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 505
Query: 391 VTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEIESKILK 443
VTFAFSPLKE LGAEN VPETKGLSLEEIESKILK
Sbjct: 506 VTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEIESKILK 558
|
|
| TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 214/412 (51%), Positives = 260/412 (63%)
Query: 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 90
L GSLYGAL GSI+ ++IAD +GR++ELI+
Sbjct: 95 LVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIY 154
Query: 91 XXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
AMH AP+YIAET PS IRG L+SLKE FIVLG++ GY +GS +N GWRYMY
Sbjct: 155 GVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMY 214
Query: 151 GLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 210
S PLA++MGIGM +QGKG+++ +E AI +L LR D +E
Sbjct: 215 ATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAE 274
Query: 211 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 270
Q+ + L L ++ E E +F E+FQG LKA IIGGGLVLFQQITGQPSVLYYA I
Sbjct: 275 -QVNEILAEL--TFVGEDKEVTFGELFQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSI 331
Query: 271 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXX 330
LQ+AGFSAA DATRVS+++G+ KL+MT +AV +D LGRRPLL+GGV
Sbjct: 332 LQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSY 391
Query: 331 XXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
P+VAV ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRG+SLAVL NFG+NA+
Sbjct: 392 YLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLVNFGANAL 451
Query: 391 VTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEIESKIL 442
VTFAFSPLKELLGA VPETKGL+LEEIE+K L
Sbjct: 452 VTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVPETKGLTLEEIEAKCL 503
|
|
| TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 203/408 (49%), Positives = 252/408 (61%)
Query: 35 GSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 94
GSLYGAL+GSI+ +S+AD +GR++ELI+
Sbjct: 99 GSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGI 158
Query: 95 XXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA 154
MH AP+YIAET PSQIRG +ISLKE VLG++ GY +GS I + GWRYMY
Sbjct: 159 GLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATIL 218
Query: 155 PLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIE 214
P ++MG GM A+QG+G+ + ++ AI +L +LR D +E Q+
Sbjct: 219 PFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAE-QVN 277
Query: 215 DTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA 274
+ L L S E E +F E+F+G LKA I GGLVLFQQITGQPSVLYYA ILQ+A
Sbjct: 278 EILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTA 335
Query: 275 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXXXXXX 334
GFSAAADATR+S+++G+ KLVMT ++V +D +GRRPLL+ GV
Sbjct: 336 GFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMFY 395
Query: 335 XGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 394
P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRGISLAVL NFG+NA+VTFA
Sbjct: 396 KNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFA 455
Query: 395 FSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEIESKIL 442
FSPLKELLGA VPETKGL+LEEIE+K L
Sbjct: 456 FSPLKELLGAGILFCAFGVICVVSLFFIYYIVPETKGLTLEEIEAKCL 503
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 133/409 (32%), Positives = 193/409 (47%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
L GA LG++ +AD++GRKR LII
Sbjct: 64 LIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVGIAIGI 123
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA-P 155
A + APLYI+E P RG L+SL +L + +GI L Y V + WR M+ P
Sbjct: 124 ASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVV-DYYFARHDAWRSMFAAGVIP 182
Query: 156 LALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIED 215
ALL+ +GM + +G ++E+A+ L KLR P +E+++E
Sbjct: 183 AALLL-LGMIVLPYSPRW-----IFSRG----HEEKALWILRKLRGHGPH---AEQELEH 229
Query: 216 TLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAG 275
SL+ D ++ F ++ + P L I GL +FQQ+TG +VLYYA IL+ G
Sbjct: 230 IRASLQQQKGDWRT--LFSKIIR-PTL---FIAIGLAVFQQVTGINTVLYYAPTILKMTG 283
Query: 276 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL---IGGVCXXXXXXXXXXXXXX 332
F A+ A ++ IG +++T I++ +D LGRRPLL +G +
Sbjct: 284 FQASQTAILATMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAMTVSLLVLSWSFKVHG 343
Query: 333 XXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 392
+A +LL+++ + IS GPI WLM SEIFPLR RG G S+ TN+ SN +VT
Sbjct: 344 HMDYMRWIAFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWASNWLVT 403
Query: 393 FAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEIESKI 441
F L E LG +VPETKG++LE+IE +
Sbjct: 404 ITFLTLIEYLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQIEENL 452
|
|
| MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 3.9e-40, Sum P(3) = 3.9e-40
Identities = 93/282 (32%), Positives = 125/282 (44%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
L GA L S+ + D GR+ +I+
Sbjct: 91 LIGAFLASLTGGVLIDRYGRRLAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISL 150
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
+ +YIAE P RG L+SL EL IV GIL Y N GW+YM+GL PL
Sbjct: 151 SSIATCVYIAEIAPQHRRGLLVSLNELMIVTGILFAYISNYAFANISNGWKYMFGLVIPL 210
Query: 157 ALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
+L I M KG QE E A L KLR +S+ E T
Sbjct: 211 GVLQAIAMYFLPPSPRFLVM-----KG--QE--ESAGKVLRKLR------VISDTTEELT 255
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGP-NLKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSA 274
L+ KSS DE + SF ++F+ N++ +IG LV F Q TGQP++L+YA +L+S
Sbjct: 256 LI--KSSLKDEY-QYSFWDLFRSKDNMRTRILIGLTLVFFVQTTGQPNILFYASTVLKSV 312
Query: 275 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 315
GF + A+ S +GV K+V T A VD +G + L IG
Sbjct: 313 GFQSNEAASLASTGVGVVKVVSTIPATLLVDHIGSKTFLCIG 354
|
|
| UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 5.3e-40, Sum P(2) = 5.3e-40
Identities = 93/282 (32%), Positives = 130/282 (46%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
L GALL S++ + D GR+ +I+
Sbjct: 91 LIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISL 150
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
+ +YIAE P RG L+SL EL IV+GIL Y N GW+YM+GL PL
Sbjct: 151 SSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPL 210
Query: 157 ALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
+L I M KG ++E A LGKLR +S+ E T
Sbjct: 211 GVLQAIAMYFLPPSPRFLVM-----KG----HEEAASKVLGKLRA------ISDTTEELT 255
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSA 274
++ KSS DE + SF ++F+ N++ I IG LV F QITGQP++L+YA +L+S
Sbjct: 256 VI--KSSLKDEY-QYSFWDLFRSKDNMRTRIMIGLMLVFFVQITGQPNILFYASTVLKSV 312
Query: 275 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 315
GF + A+ S +GV K++ T A VD +G + L IG
Sbjct: 313 GFQSNEAASLASTGVGVVKVISTIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 91/282 (32%), Positives = 127/282 (45%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
L GALL S++ + D GR+ +I+
Sbjct: 91 LIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISL 150
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
+ +YIAE P RG L+SL EL IV+GIL Y N GW+YM+GL PL
Sbjct: 151 SSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPL 210
Query: 157 ALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
+L I M KG ++E A LGKLR + +
Sbjct: 211 GVLQAIAMYFLPPSPRFLVM-----KG----HEEAASKVLGKLR--------AVLDTTEE 253
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSA 274
L +KSS DE + SF ++F+ N++ I IG LV F QITGQP++L+YA +L+S
Sbjct: 254 LTVIKSSLKDEY-QYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSV 312
Query: 275 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 315
GF + A+ S +GV K++ T A VD +G + L IG
Sbjct: 313 GFQSNEAASLASTGVGVVKVISTIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 88/283 (31%), Positives = 127/283 (44%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
L+GAL S+ + D GR+ +II
Sbjct: 57 LFGALFASLTGGFLIDRFGRRFAIIIASSLLVMGSLILLPHESYGILIVGRIAIGISISL 116
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAP 155
+ +YIAE P RG L+SL EL IV+GIL Y + ++ +V GW+YM+GL P
Sbjct: 117 SSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAY-ISNYAFASVSHGWKYMFGLVIP 175
Query: 156 LALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIED 215
L L I M ++ E A L +LR D E
Sbjct: 176 LGALQAIAMYFLPPSPRFLV---------MKNNDEAARKILERLRET--SDATKE----- 219
Query: 216 TLVSLKSSYTDEKSEGSFLEVFQGPN-LKA-FIIGGGLVLFQQITGQPSVLYYAGPILQS 273
L +KSS DE + SF+++F+ N ++A ++G LV F Q TGQP++L+YA +L+S
Sbjct: 220 -LTVIKSSLKDEH-QYSFVDLFRSKNNMRARMLVGLTLVFFVQTTGQPNILFYASTVLKS 277
Query: 274 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 315
GF + A+ S +GV K+V T A VD +G + L IG
Sbjct: 278 VGFQSNEAASLASTGVGVVKVVSTVPATVFVDKVGSKTFLCIG 320
|
|
| UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 90/280 (32%), Positives = 125/280 (44%)
Query: 39 GALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAM 98
GALL S+ + D GR+ +I+ +
Sbjct: 89 GALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSS 148
Query: 99 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 158
+YIAE P RG L+SL EL IV+GIL Y N GW+YM+GL PL +
Sbjct: 149 IATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGV 208
Query: 159 LMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 218
L I M +G S LG+LR LS+ E T++
Sbjct: 209 LQAIAMYFLPPSPRFLVMKGQEGAAS---------KVLGRLRA------LSDTTEELTVI 253
Query: 219 SLKSSYTDEKSEGSFLEVFQGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGF 276
KSS DE + SF ++F+ N++ I IG LV F QITGQP++L+YA +L+S GF
Sbjct: 254 --KSSLKDEY-QYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGF 310
Query: 277 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 315
+ A+ S +GV K++ T A VD +G + L IG
Sbjct: 311 QSNEAASLASTGVGVVKVISTIPATLLVDHVGSKTFLCIG 350
|
|
| RGD|1310175 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
Identities = 93/282 (32%), Positives = 125/282 (44%)
Query: 37 LYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
L GA L S+ + D GR+ +I+
Sbjct: 91 LIGAFLASLTGGVLIDRYGRRLTIILSSCLLGLGSLVLILSLSYTLLITGRVAIGVSISL 150
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 156
+ +YIAE P RG L+SL EL IV GIL Y N GW+YM+GL PL
Sbjct: 151 SSIATCVYIAEIAPQHRRGLLVSLNELMIVTGILFAYISNYAFANISNGWKYMFGLVIPL 210
Query: 157 ALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDT 216
+L I M KG QE E A L KLR +S+ E T
Sbjct: 211 GVLQAIAMYFLPPSPRFLVM-----KG--QE--EAAGKVLRKLR------VISDTAEELT 255
Query: 217 LVSLKSSYTDEKSEGSFLEVFQGP-NLKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSA 274
L+ KSS DE + SF ++F+ N++ +IG LV F Q TGQP++L+YA +L+S
Sbjct: 256 LI--KSSLKDEY-QYSFWDLFRSKDNMRTRILIGLTLVFFVQTTGQPNILFYASTVLKSV 312
Query: 275 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 315
GF + A+ S +GV K+V T A VD +G + L IG
Sbjct: 313 GFQSNEAASLASTGVGVVKVVSTIPATLLVDHVGSKTFLCIG 354
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8MKK4 | TRE12_DROME | No assigned EC number | 0.3125 | 0.9232 | 0.8381 | yes | no |
| Q0WWW9 | XYLL3_ARATH | No assigned EC number | 0.8169 | 0.9503 | 0.7544 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3504 | 0.8668 | 0.8402 | yes | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3292 | 0.8781 | 0.8383 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 443 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-76 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-74 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-61 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-20 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-15 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-14 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-12 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-12 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 9e-11 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-09 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-07 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 4e-07 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-05 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 7e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-04 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 0.001 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 0.002 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 0.002 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 3e-76
Identities = 142/408 (34%), Positives = 232/408 (56%), Gaps = 27/408 (6%)
Query: 39 GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGL 96
G L+GS+ + D GRK+ L+I VL+ +GAL +A G +L+VGR++ GLG+G
Sbjct: 58 GCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGG 117
Query: 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYGLSA 154
P+YI+E P ++RG L SL +L I GIL+ +G + + GWR GL
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQF 177
Query: 155 PLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIE 214
A+L+ IG+ LP SPRWL+L+ E+A + L KL R ++ +
Sbjct: 178 VPAILLLIGLLFLPESPRWLVLKGK---------LEEARAVLAKL-RGVSDVDQEIQEEK 227
Query: 215 DTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQS 273
D+L + E + S+LE+F+G ++ ++G L +FQQ+TG ++ YY+ I ++
Sbjct: 228 DSLE-----RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFET 282
Query: 274 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 333
G S D+ V++++GV V T+IA+ VD GRRPLL+ G G+A+ L+L
Sbjct: 283 LGLS---DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG 339
Query: 334 LGGFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390
+ +VA+ +LL++ + + +GP+ W++VSE+FPL R + +++A N+ +N +
Sbjct: 340 VAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFL 399
Query: 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 438
+ F F + +G +FL+FA + L +LF+ VPETKG +LEEI+
Sbjct: 400 IGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 9e-74
Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 30/414 (7%)
Query: 39 GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLGVLLVGRLLYGLGIG 95
G +G++ ++D GRK+ L+I A+L+ +GA+ A + +L+VGR+L G+G+G
Sbjct: 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142
Query: 96 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS--FQINAVGGWRYMYGLS 153
+A P+Y++E P +RG L SL +L I GIL+ Y GS +N GWR GL
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202
Query: 154 APLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQI 213
A L+ +G++ LP SPRWL+ +G+ E+A +L +LR G ++++
Sbjct: 203 LIPAGLLFLGLFFLPESPRWLVG---KGR------VEEARKSLARLR----GTSGEDKEL 249
Query: 214 EDTLVSLKSSYTDEK-----SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG 268
D L + + EK S GS + + F+ G L FQQ TG +++YY+
Sbjct: 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL-GVVLQWFQQFTGINAIMYYSP 308
Query: 269 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328
I ++AG S A VS+++G T++A+ VD GRRPLL+ G G+A+ L +L
Sbjct: 309 TIFENAGVSTD-HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367
Query: 329 AYYKILGGFPL-----VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 383
VA+ +LL++ + + +GP+ W++VSEIFPL R +GIS+AV
Sbjct: 368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427
Query: 384 NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437
N+ +N IV F F + E +G +F+ F + L ++F+ +PETKG +LEEI
Sbjct: 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 1e-61
Identities = 141/439 (32%), Positives = 228/439 (51%), Gaps = 59/439 (13%)
Query: 30 SLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVG--- 86
+ AL G + G LG ++ GR+ L IAAVL+ + AL +A+ P G +G
Sbjct: 62 ASALIGCIIGGALGGYC----SNRFGRRDSLKIAAVLFFISALGSAW-PEFGFTSIGPDN 116
Query: 87 ----------RLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG 136
R++ G+G+GLA +P+YIAE P+ IRG L+S + I+ G L+ YFV
Sbjct: 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVN 176
Query: 137 SFQINAVG-------GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYK 189
F + GWRYM+ A ALL + ++ +P +PR+L+ R Q
Sbjct: 177 YFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ--------- 227
Query: 190 EQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 249
EQA L K+ G+ L+ + +++ +K S + G L +F + +IG
Sbjct: 228 EQAEGILRKIM----GNTLATQALQE----IKHSLDHGRKTGGKLLMF---GVGVIVIGV 276
Query: 250 GLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV-SVVIGVFKLVMTWIAVAKVDDLG 308
L +FQQ G VLYYA I ++ G A+ D + ++++GV L T +A+ VD G
Sbjct: 277 MLSVFQQFVGINVVLYYAPEIFKTLG--ASTDIALLQTIIVGVINLTFTVLAIMTVDKFG 334
Query: 309 RRPLLIGGVCGIALSLLLLS--AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSE 366
R+PL I G G+A+ + L Y + G +VA+ ++L YV + +S+GP+ W+++SE
Sbjct: 335 RKPLQIIGALGMAIGMFSLGTAFYTQAPG---IVALLSMLFYVAAFAMSWGPVCWVLLSE 391
Query: 367 IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF------LLFAAIAFLAVL 420
IFP RG+ +++AV + +N V++ F + + F ++ + LA L
Sbjct: 392 IFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 451
Query: 421 FIVRTVPETKGLSLEEIES 439
F+ + VPETKG +LEE+E+
Sbjct: 452 FMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 109/414 (26%), Positives = 181/414 (43%), Gaps = 64/414 (15%)
Query: 39 GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI-GLA 97
G LLGS + ++D GRK+ L+++ ++ A+ + TA++P V LV RLL G+GI G+
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198
Query: 98 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLA 157
+ L E P + R + +L ++F LG++L V F + WR++ +
Sbjct: 199 VQAVVLN-TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF----IPDWRWLQLAVSLPT 253
Query: 158 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 217
L + W +P SPRWL+ QG+ E+A+ L ++ + G KL E
Sbjct: 254 FLFFLLSWFVPESPRWLIS---QGRI------EEALKILQRIAKI-NGKKLP---AEVLS 300
Query: 218 VSLKSSYTDEKSEGSFLEVFQGPNLKA---------FIIG---GGLVLFQQITGQPSVLY 265
+SL+ + K + SFL++F+ PNL+ F GLVL G
Sbjct: 301 LSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------ 354
Query: 266 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 325
G I S + + +T + +D LGRR + + ++LL
Sbjct: 355 --GNIYLDLFISGLVE------LPAKL---ITLLL---IDRLGRRYTMAASLLLAGVALL 400
Query: 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTN 384
LL + + + +L +F + +L +E++P R G+ + +
Sbjct: 401 LL---LFVPVDLYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMAR 456
Query: 385 FGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV--PETKGLSLEE 436
GS SP LG + +FL LA+L + T+ PETKG+ L E
Sbjct: 457 VGS------IISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Query: 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA 75
P L LG + L + G LGS+L ++D GR+R L++ +L+ALG+L A
Sbjct: 23 PLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82
Query: 76 YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 135
+A L +LLVGR L GLG G A IAE P + RG + L LG LLG +
Sbjct: 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLL 142
Query: 136 GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 176
G + GWR+++ + A L LL+ + + L L L
Sbjct: 143 GGL-LAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLAL 182
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 90/370 (24%), Positives = 140/370 (37%), Gaps = 49/370 (13%)
Query: 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG 79
QLG LFS L G +GAL L AD +GR+R L+ + +L+++ L A A
Sbjct: 52 VQLGF---LFSAGLIGMAFGALFFGPL----ADRIGRRRVLLWSILLFSVFTLLCALATN 104
Query: 80 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 139
+ LL+ R L GLG+G M ++E P + RGT + L +G +G F+ +
Sbjct: 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
Query: 140 INAVGGWRYMY--GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 197
I V GWR ++ G APL LL+ + + LP S +L+ + + + + A
Sbjct: 165 I-PVFGWRSLFYVGGIAPLLLLLLLMRF-LPESIDFLVSK--RPETVRRIVNAIAPQM-- 218
Query: 198 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257
+ L E T F +FQG + ++ L +
Sbjct: 219 ---QAEAQSALPE-----------QKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLV 264
Query: 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVM---TWIAVAKVDDLGRRPLLI 314
+Y+ L + + +F + I D LG R
Sbjct: 265 G-----VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT-- 317
Query: 315 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI-SFGPISWLMVS--EIFPLR 371
LLLL A + +L G L + + LLL G S L +P
Sbjct: 318 -------ALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTA 370
Query: 372 TRGRGISLAV 381
R G+ A+
Sbjct: 371 IRATGVGWAI 380
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 96/396 (24%), Positives = 150/396 (37%), Gaps = 71/396 (17%)
Query: 42 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLG 93
LG+I+ D +GRK+ L+I ++ +G L P +LL+ RL+ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 146
+G GA LY+AE P RG S +++ +G+LL +G GW
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 147 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 206
R + +SA L L IG++ LRR
Sbjct: 170 RIPFLVSAVLVL---IGLY---------------------------------LRRN---- 189
Query: 207 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 266
+E+T V K+ +K G E + K F++G GLV+ T Y
Sbjct: 190 ------LEETPVFEKAQEKHKKKRGPIAETLTK-HRKPFLLGLGLVIATTTTFYLITTYL 242
Query: 267 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-LLIGGVCGIALSLL 325
+ Q+ G SA A V ++ + + ++ A D +GRRP L+I V L++
Sbjct: 243 PTYLTQTLGLSAN-SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301
Query: 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL----AV 381
LL A + G + +L + GP+ + E+FP R G SL A
Sbjct: 302 LLMAL--LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNLAG 358
Query: 382 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL 417
G + A + A +L A+ L
Sbjct: 359 AIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 82/375 (21%), Positives = 130/375 (34%), Gaps = 51/375 (13%)
Query: 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA 75
L LG + L L G L L ++D GR+R L+I +L+ALG L
Sbjct: 21 LYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLL 80
Query: 76 YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 135
+A L +LLV R+L GLG G A IA+ P + RG + L LG LG +
Sbjct: 81 FASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL 140
Query: 136 GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISA 195
G + ++ GWR + + A LALL +
Sbjct: 141 GGL-LASLFGWRAAFLILAILALLAAV--------------------------------L 167
Query: 196 LGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 255
L RPP + + E+ L ++ + + L
Sbjct: 168 AALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL--------------ALLL 213
Query: 256 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 315
++L Y + G SA + + + + + D LGRR L+
Sbjct: 214 FGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLG-AIGRLLLGRLSDRLGRRRRLLL 272
Query: 316 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 375
+ + L+ L L+ + + + LL +G P +VS++ P RG
Sbjct: 273 ALLLLILAALGLAL---LSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGT 329
Query: 376 GISLAVLTNFGSNAI 390
L A+
Sbjct: 330 ASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 110/462 (23%), Positives = 168/462 (36%), Gaps = 83/462 (17%)
Query: 32 ALCGSLYGALLGSILVYSIADFLGRKR----ELIIAAVLYALGALTTAYAPG--LGVLLV 85
A G+L G L L AD LGRKR ELII + L+ +P + L
Sbjct: 65 ASIGTLAGQLFFGWL----ADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCF 120
Query: 86 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV---------- 135
R G+GIG + + +E + RG +++ GIL G V
Sbjct: 121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKH 180
Query: 136 ------------GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL---RAVQ 180
GS WR + G A ALL ++P +PR+ Q
Sbjct: 181 SLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQ 240
Query: 181 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 240
+ + I A D++ E+ V S F F+
Sbjct: 241 AASDMSAVLQVKIEA--------EPDEV-EKASTAVEVPKASWS------DFFTHFFKWR 285
Query: 241 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAT---RVSVVIGVFKLVMT 297
+ K ++G F V IL + G+S A V L++
Sbjct: 286 HGKH-LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIA 344
Query: 298 --------WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYV 349
W+ V VD +GR+P+ + G + + +L Y L +A+ L +
Sbjct: 345 LAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFF 404
Query: 350 GCYQISFGP--ISWLMVSEIFPLRTRG--RGISLAVLTNFGSNAIVTFAFSPLKE----- 400
+FGP ++++ E+FP R R GIS A G+ I F F L +
Sbjct: 405 A----NFGPNATTFIVPGEVFPTRYRSTAHGIS-AASGKAGA-IIGQFGFLYLAQHGDPT 458
Query: 401 -----LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437
+ ++ +FA FL +LF + +PETKG SLEE+
Sbjct: 459 KGYPTGIWMGHVLEIFALFMFLGILFTL-LIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 19 VAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP 78
VAQ+G FS + G L GALLG L AD +GRKR LI++ L+ L +L TA A
Sbjct: 49 VAQMG---WAFSAGILGLLPGALLGGRL----ADRIGRKRILIVSVALFGLFSLATAQAW 101
Query: 79 GLGVLLVGRLLYGLGIGLAMHGAPLYIA---ETCPSQIRGTLISLKELFIVLGILLGYFV 135
LLV RLL G+G+G A+ P IA E ++RGT +SL + G L +
Sbjct: 102 DFPSLLVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 136 GSFQINAVGGWRYMY--GLSAPLALLMGIGMWSLPPSPRWL 174
G WR+++ G PL L+ + W LP S +
Sbjct: 159 GVLAAGD-AAWRHIFYVGGVGPLLLVPLLMRW-LPESRAFA 197
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 5/179 (2%)
Query: 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 305
++ L F G +L Y LQ +AA+A + + G+ ++ + D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 306 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS 365
LGRR LL+ +A LLL A L + + + P + S
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF-----PALLTLAS 291
Query: 366 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 424
E+ P RG L A+ L + G +FL+ AA+A LA L ++
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 95/412 (23%), Positives = 159/412 (38%), Gaps = 69/412 (16%)
Query: 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA 75
P + A LG + + G LG+ L+ + L R+R L+ L+ + L +A
Sbjct: 37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA 96
Query: 76 YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 135
AP VLL+ R L GL G+ A A P RG ++L + L +LG +
Sbjct: 97 LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156
Query: 136 GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISA 195
G+F + + GWR + A LALL + + W LL + GSL +
Sbjct: 157 GTF-LGQLFGWRATFLAIAVLALLALLLL--------WKLLPPSEISGSLPGPLRTLLRL 207
Query: 196 LGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 255
L + ++ G L F
Sbjct: 208 LRRPG---------------------------------------------VLLGLLATFL 222
Query: 256 QITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 314
+TG ++ Y P L+S AGFS +A + V + G+ + + ++ D G R LI
Sbjct: 223 FMTGHFALYTYIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLL-GGRLADRGPRRALI 280
Query: 315 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG 374
+ +AL+LL L+ G P +A++ L L + +F P + + + L
Sbjct: 281 AALLLLALALLALT----FTGASPALALALLFL----WGFAFSPALQGLQTRLARLAPDA 332
Query: 375 RGISLAVLT---NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 423
++ ++ N G A+ + + LG + AA+ LA+L +
Sbjct: 333 ADLAGSLNVAAFNLG-IALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 39 GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM 98
G L+ S L + D GRK L++ ++ L A + + VL++ R L G G A+
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 99 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 158
IA+ P + RG + L I LG LLG +G + GWR + A LAL
Sbjct: 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV-LAQFLGWRAPFLFLAILAL 128
Query: 159 LMGIGMWSLPP 169
I + L P
Sbjct: 129 AAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 43 GSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 102
G+++ D GR+ ++ + VL++ G L +APG + + RL+ G+G+G +
Sbjct: 63 GALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSA 122
Query: 103 LYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLA 157
Y+ E+ P +R ++ G +G V + + V GWR ++ +S
Sbjct: 123 AYVIESWPKHLRNKASG----LLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPI 178
Query: 158 LLMGIGMWSLPPSPRW 173
+ ++P + W
Sbjct: 179 IFALWLRKNIPEAEDW 194
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 39 GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM 98
G ++G+ +AD LGRK+ L+I + A +++ G G L RLL G GIG A+
Sbjct: 214 GMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAI 273
Query: 99 HGAPLYIAETCPSQIRGTLISLKELFIVLG---------ILLGYFVGSFQINAV---GGW 146
Y AE + RG +S +F ++G ++ ++ SFQ+ + W
Sbjct: 274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSW 333
Query: 147 RYMYGLSAPLALLMGIGMWSLPPSPRWLL 175
R + A + + +P SPR+ L
Sbjct: 334 RVFVIVCAFPCVFAIGALTFMPESPRFFL 362
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 42 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 101
G +L+ ++ D GR+ ++I+ VL+++G L +APG L + RL+ G+G+ +
Sbjct: 70 FGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSS 129
Query: 102 PLYIAETCPSQIR----GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 150
Y+ E+ P +R G LIS +G ++ V S + V GWR ++
Sbjct: 130 ATYVIESWPKHLRNKASGFLIS----GFSIGAVVAAQVYSL-VVPVWGWRALF 177
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 39 GALLGSILVYSIADFLGRKRE-LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLA 97
G +LG++L ++D LGR+R L+I +L ALG L A AP L +LLV LL G G+G A
Sbjct: 223 GGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFA 282
Query: 98 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLA 157
+E P + RGT L F LG LG + + GG+ ++ + A LA
Sbjct: 283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL-LLDTGGYGGVFLILAALA 341
Query: 158 LLMGIGMWSLP 168
LL + + LP
Sbjct: 342 LLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 108/420 (25%), Positives = 169/420 (40%), Gaps = 92/420 (21%)
Query: 42 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLG 93
+G L IAD GRK+ ++I+ + G+L A PG LL+ RL GL
Sbjct: 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137
Query: 94 IGLAMHGAPLYIAETCPSQIRG--------TLISLKELFIVLGILLGYFVGSFQINAVGG 145
+G + Y++E +G TLI + L +++ ++L + ++ G
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELRE-WG 196
Query: 146 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG 205
WR + L A LA++ L LR L E +Q AL + G
Sbjct: 197 WRIPFALGAVLAVVA-------------LWLRR-----QLDETSQQETRAL-----KEAG 233
Query: 206 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLY 265
SLK + + ++ F+ V F G L + T Y
Sbjct: 234 -------------SLKGLWRNRRA---FIMVL------GFTAAGSLCFYTFTT------Y 265
Query: 266 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-PLLIGGVCGIALSL 324
++ +AG A + ++ + VF L+ I A D +GRR +L G ++
Sbjct: 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG-ALSDKIGRRTSMLCFGSLAALFTV 324
Query: 325 LLLSAYYKI---LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP--LRTRGRGISL 379
+LSA + F LV + LL V Y IS ++ +E+FP +R G G+S
Sbjct: 325 PILSALQNVSSPYAAFGLVMCA--LLIVSFYT----SISGILKAEMFPAQVRALGVGLSY 378
Query: 380 AVLTN-FGSNAIVTFAFSPLKELLGAENIFL----LFAAIAFLAVLFIVRTVPETKGLSL 434
AV FG +A + LK +G E F L A +AFL L + R + KG+ L
Sbjct: 379 AVANALFGGSA--EYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLMLHR---KGKGMRL 432
|
Length = 432 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG 79
AQ G F FS ++G + D G ++ L + V++ + A+A
Sbjct: 29 AQYGYVFSAFSWGY-------VVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81
Query: 80 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-ILLGYFVGSF 138
L + R+L G G L +A P+ R T +S+ LG I+ G VG
Sbjct: 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI 141
Query: 139 QINAVGGWRYMYGLSAPLALLMGI 162
I+ W++ + + L ++ G+
Sbjct: 142 LIHF--SWQWAFIIEGVLGIIWGV 163
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 42 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG---LGVL-----LVGRLLYGLG 93
LG+I++ + D +GR++ LI+ + A G L A+ PG +G+ L+GRLL G
Sbjct: 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFS 130
Query: 94 IGLAMHGAPLYIAETCPSQIRGTLISL----KELFIVLGILLGYFVGSF----QINAVGG 145
G+ + G +Y+AE +G S +++ +V LLGY + + Q+ G
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAE-WG 189
Query: 146 WR 147
WR
Sbjct: 190 WR 191
|
Length = 434 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA 75
P + A L + + + L L G G +L ++D GR+ L++ ++AL +L A
Sbjct: 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88
Query: 76 YAPGLGVLLVGRLLYGLG 93
+ + LLV R + G
Sbjct: 89 LSNNIETLLVLRFVQAFG 106
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA 75
P++ LGS+ + + + L +A G +R +I+ + LG+L
Sbjct: 26 PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85
Query: 76 YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 135
AP L ++++ R++ G G G + + + P + RG +++ L +++ LG +
Sbjct: 86 VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL 145
Query: 136 GSFQINAVGGWRYMYGLSAPLAL 158
G + I WR+++ ++ P+ +
Sbjct: 146 GGWIIENY-HWRWIFLINVPIGI 167
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.004
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG 79
A LG T + + G G L +AD GRK ++ + V Y++G + A G
Sbjct: 46 ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG 105
Query: 80 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS-LKELFIVLGILLGYFVGSF 138
+ +L + R + G+G+ A Y E+ P ++ + L F + I+ YF+ SF
Sbjct: 106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165
Query: 139 QINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR-AVQGKGSLQEYKEQAISALG 197
GWR + + LL+ P S W + + +GK S + ++S G
Sbjct: 166 A--EAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKG 223
Query: 198 KLRR 201
R
Sbjct: 224 LFNR 227
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.98 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.89 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.89 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.88 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.81 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.81 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.75 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.72 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.71 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.68 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.68 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.65 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.63 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.58 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.56 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.53 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.53 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.52 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.51 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.51 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.5 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.5 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.49 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.49 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.49 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.48 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.48 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.48 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.48 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.47 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.47 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.47 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.46 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.45 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.44 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.44 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.42 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.42 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.42 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.41 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.41 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.41 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.4 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.39 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.39 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.39 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.38 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.38 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.38 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.37 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.37 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.37 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.36 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.36 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.36 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.36 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.34 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.34 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.34 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.33 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.33 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.32 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.32 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.32 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.31 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.31 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.31 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.3 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.3 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.3 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.29 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.27 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.27 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.26 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.25 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.23 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.22 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.19 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.19 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.18 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.18 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.17 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.17 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.16 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.15 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.15 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.14 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.14 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.14 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.13 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.11 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.08 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.07 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.06 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.06 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.06 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.06 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.06 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.05 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.04 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.03 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.03 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.02 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.01 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.98 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.95 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.88 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.87 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.86 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.84 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.81 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.81 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.78 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.78 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.77 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.74 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.73 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.73 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.73 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.67 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.65 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.64 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.6 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.59 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.58 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.55 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.48 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.46 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.43 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.37 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.37 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.35 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.29 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.26 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.16 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.14 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.07 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.04 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.93 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.88 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.8 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.78 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.65 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.61 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.61 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.19 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.19 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.17 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.12 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 97.0 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.8 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.44 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.21 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.11 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.11 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.09 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.98 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.14 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.03 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 94.05 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.56 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.4 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.9 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 90.54 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 89.39 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.08 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.52 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.47 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 81.88 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.23 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=322.00 Aligned_cols=401 Identities=31% Similarity=0.542 Sum_probs=344.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHhhhhhhhchhhhhHh
Q 013431 29 FSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYI 105 (443)
Q Consensus 29 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 105 (443)
.+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.++..+ .+++.+++++|++.|+..|.......-++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 678899999999999999999999999999999998888888877765 57899999999999999999999999999
Q ss_pred hhcCcccchhhHHHHHHHHHHHHHHHHHHhhhc-ccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCc
Q 013431 106 AETCPSQIRGTLISLKELFIVLGILLGYFVGSF-QINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGS 184 (443)
Q Consensus 106 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~-l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~ 184 (443)
.|..|.+.||......+.+..+|..++..++.. +......|++.+....+++++..+...++||||||+..+
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~------- 214 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK------- 214 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-------
Confidence 999999999999999999999999999777643 344444799999999999999999999999999999875
Q ss_pred hhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhH-HHHHHHHHHHHHHhCchhh
Q 013431 185 LQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA-FIIGGGLVLFQQITGQPSV 263 (443)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 263 (443)
+++.++|++.+++.+.+.+++...+...++..+ ++.+++++.+++++++++..+. ..+...+....++.+.+..
T Consensus 215 -k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~----~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai 289 (485)
T KOG0569|consen 215 -KGDEEEARKALKFYRGKEDVEAEIEEMLREIEE----EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAI 289 (485)
T ss_pred -cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH----hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCccee
Confidence 678999999999999887655544433332222 2223346678999999986664 5666778888899999999
Q ss_pred HhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccc-h---h
Q 013431 264 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-P---L 339 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 339 (443)
.+|...++++.|++. .++.+.....++..++.++.+.++.||.|||+.++.+..++.+..+++.......+.. + +
T Consensus 290 ~~Yst~i~~~aG~~~-~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y 368 (485)
T KOG0569|consen 290 FFYSTSIFKTAGFTP-EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY 368 (485)
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999887 8888999999999999999999999999999999999888888777766554433222 2 3
Q ss_pred HHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHH
Q 013431 340 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 419 (443)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 419 (443)
..+.+.+++...+..+.+|+.+-+.+|++|++.|..++++....+++..++....+.++.+..|. ..|+++.+.+++..
T Consensus 369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~ 447 (485)
T KOG0569|consen 369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFL 447 (485)
T ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHH
Confidence 34567777888888999999999999999999999999999999999999999999999999997 78888999999999
Q ss_pred HHhhhccccCCCCCHHHHHhhhhC
Q 013431 420 LFIVRTVPETKGLSLEEIESKILK 443 (443)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~ 443 (443)
+..++.+||||+|+.+|+.++++|
T Consensus 448 i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 448 IYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHhCcccCCCCHHHHHHHHHh
Confidence 999999999999999999888764
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=330.28 Aligned_cols=402 Identities=20% Similarity=0.212 Sum_probs=299.2
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
..|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+++++++++.+++.++++++++++.++++|++.|++
T Consensus 189 ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g 268 (742)
T TIGR01299 189 VLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268 (742)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC------------ccchHHHHhhhhHHHHHHH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA------------VGGWRYMYGLSAPLALLMG 161 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~------------~~~wr~~f~~~~~~~~~~~ 161 (443)
.+...+...+++.|++|+++|++.+++..+++.+|.++++.++..+... ..+||+.+++.++++++.+
T Consensus 269 ~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l 348 (742)
T TIGR01299 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI 348 (742)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876554422 1279999999998888888
Q ss_pred HHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCC-cchhhH--HHHHH--hcc---ccccccc-----
Q 013431 162 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK-LSERQI--EDTLV--SLK---SSYTDEK----- 228 (443)
Q Consensus 162 ~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~--~~~---~~~~~~~----- 228 (443)
+..+++||||+|+.. +++.+++.+.++++++.+.... .+.... +.... +.. +..+...
T Consensus 349 l~~~~lPESPrwL~~---------~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (742)
T TIGR01299 349 GALTFMPESPRFFLE---------NGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQR 419 (742)
T ss_pred HHHHHcCCCHHHHHH---------CCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhc
Confidence 888889999999986 4667888888888776554321 111110 00000 000 0000000
Q ss_pred -----------cccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhc-----------------------
Q 013431 229 -----------SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA----------------------- 274 (443)
Q Consensus 229 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 274 (443)
...+++++++.+ +++..+...+.++....+++++..|+|.++++.
T Consensus 420 ~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (742)
T TIGR01299 420 CFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFN 498 (742)
T ss_pred chhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccc
Confidence 001355566554 444455555666666667778889999875441
Q ss_pred -------------------CC-----C---------------C-------------------------------------
Q 013431 275 -------------------GF-----S---------------A------------------------------------- 278 (443)
Q Consensus 275 -------------------~~-----~---------------~------------------------------------- 278 (443)
|. . +
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (742)
T TIGR01299 499 FTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLH 578 (742)
T ss_pred cchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccc
Confidence 00 0 0
Q ss_pred ---------------chhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHH
Q 013431 279 ---------------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVS 343 (443)
Q Consensus 279 ---------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (443)
.........+..++.+++.++.++++||+|||+++..+.++.+++.+++.+. ......++
T Consensus 579 ~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-----~s~~~ll~ 653 (742)
T TIGR01299 579 NKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-----NSESAMIA 653 (742)
T ss_pred cCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-----ccHHHHHH
Confidence 0012344566778999999999999999999999988888877777666542 12222333
Q ss_pred HHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhh
Q 013431 344 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 423 (443)
..++..++.. ...+..+++++|.+|++.|++++|+.+....+|++++|.+.+.+.+. +...++++.+++.++++++.+
T Consensus 654 ~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 654 LLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 33445668899999999999999999999999999999999988775 445677777777666665544
Q ss_pred hccccCCCCC
Q 013431 424 RTVPETKGLS 433 (443)
Q Consensus 424 ~~~~~~~~~~ 433 (443)
++||++++.
T Consensus 732 -~LPET~~~~ 740 (742)
T TIGR01299 732 -KLPDTRGQV 740 (742)
T ss_pred -hCCCCcccc
Confidence 458888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=321.88 Aligned_cols=399 Identities=22% Similarity=0.284 Sum_probs=280.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccch------HHHHHHHHHHHhhhhhh
Q 013431 23 GSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG------LGVLLVGRLLYGLGIGL 96 (443)
Q Consensus 23 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~~~ 96 (443)
+.+..+.+++.+.+.+++.++++++|+++||+|||+++.++.++..+++++++++++ ++.++++|+++|++.|.
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence 456778899999999999999999999999999999999999999999999998876 78999999999999999
Q ss_pred hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccC----------------------CccchHHHHhhhh
Q 013431 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN----------------------AVGGWRYMYGLSA 154 (443)
Q Consensus 97 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----------------------~~~~wr~~f~~~~ 154 (443)
..+....++.|++|+++|++++++.+....+|..+++.++..+.. ...+||+.|.+.+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ 211 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGA 211 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHH
Confidence 999999999999999999999999999999999999988765421 0127999999998
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchh
Q 013431 155 PLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 234 (443)
Q Consensus 155 ~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (443)
+++++..+..+++||||||+..|++ +++++.+.+.+..+.+..++.++ .++ .+++ ++..+.+++
T Consensus 212 ip~~i~~~~~~~lpESpr~l~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~--~~~----~~~~--~~~~~~~~~ 275 (502)
T TIGR00887 212 VPALLALYFRLTIPETPRYTADVAK--------DVEQAASDMSAVLQVKIEAEPDE--VEK----ASTA--VEVPKASWS 275 (502)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhCc--------chHHHHHHHHHHhccccccCccc--ccc----hhcc--ccchhhhHH
Confidence 8888887888899999999876421 11233444444333221111111 000 0000 011123567
Q ss_pred hhccCC---chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhH-----------HHHHHHHHHHHHHHHHHH
Q 013431 235 EVFQGP---NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADA-----------TRVSVVIGVFKLVMTWIA 300 (443)
Q Consensus 235 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 300 (443)
++++++ +.++..+.....++.....++....|.|.++++.|.+..... ........++.+++.++.
T Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~ 355 (502)
T TIGR00887 276 DFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVT 355 (502)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776542 222233322222232222233456678888888887642110 112334445677788999
Q ss_pred HHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHH
Q 013431 301 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 380 (443)
Q Consensus 301 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 380 (443)
++++||+|||+.+..+..+.+++..++...... ...........+....+..+..+..+.+..|.+|++.|+++.|+.
T Consensus 356 ~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~ 433 (502)
T TIGR00887 356 VFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH--LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGIS 433 (502)
T ss_pred HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHH
Confidence 999999999998887776666666555443211 011111222222223334455667778889999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhh----------ccchhhhHHHHHHHHHHHHhhhccccCCCCCHHHHHhh
Q 013431 381 VLTNFGSNAIVTFAFSPLKELL----------GAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESK 440 (443)
Q Consensus 381 ~~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (443)
+..+.++++++|.+.+.+.+.. ++...+.+++++++++.+. .++.||+++++.||+++|
T Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 434 AASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSGE 502 (502)
T ss_pred HHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhCC
Confidence 9999999999999999998843 3445677777777776554 456799999998887754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=314.01 Aligned_cols=405 Identities=33% Similarity=0.565 Sum_probs=291.5
Q ss_pred cchhhhhh--------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc---------
Q 013431 15 RPSLVAQL--------GSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--------- 77 (443)
Q Consensus 15 ~p~i~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--------- 77 (443)
.|.+++++ +.++.+.+++.+.+.++..++++++|+++||+|||+++..+..++.++.+.++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 114 (479)
T PRK10077 35 VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP 114 (479)
T ss_pred HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 45666666 8999999999999999999999999999999999999999999999998888763
Q ss_pred ---chHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc--------CCccch
Q 013431 78 ---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGW 146 (443)
Q Consensus 78 ---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~~w 146 (443)
++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+|..+++.++..+. +.. +|
T Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gW 193 (479)
T PRK10077 115 DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD-GW 193 (479)
T ss_pred cchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC-Ch
Confidence 235678899999999999999999999999999999999999999999999999988765443 234 89
Q ss_pred HHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccc
Q 013431 147 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 226 (443)
Q Consensus 147 r~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (443)
|+.|++.+++.++..+..+++||+|+|+..+ ++.+++++..++..+.++ .+...++.....++ +
T Consensus 194 r~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~---------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~ 257 (479)
T PRK10077 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSR---------GKQEQAEGILRKIMGNTL----ATQALQEIKHSLDH---G 257 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHc---------CCHHHHHHHHHHHcCChh----HHHHHHHHHHHHHH---h
Confidence 9999998888887777777899999886532 223333333333322111 00011111000000 0
Q ss_pred cccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013431 227 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 306 (443)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 306 (443)
++ ..+..+. ..............+....++....++.|.+.++.+.+. ..........++..+++.++.++++||
T Consensus 258 ~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~~~~i~~~~~g~l~dr 332 (479)
T PRK10077 258 RK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDK 332 (479)
T ss_pred hh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111 111122222233344444455566778899888888775 456667777888899999999999999
Q ss_pred cCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHH
Q 013431 307 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 386 (443)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 386 (443)
++||+.+..+..+.+++.+.+...... ............++..+....+.+..+.+++|.+|+++|+++.|+.+...++
T Consensus 333 ~g~r~~~i~~~~~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 411 (479)
T PRK10077 333 FGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411 (479)
T ss_pred hcChHHHHHhHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH
Confidence 999999988888877777666543221 1112222233334444444445567778999999999999999999999999
Q ss_pred HHHHHHHhhHHHH------HhhccchhhhHHHHHHHHHHHHhhhccccCCCCCHHHHHhhhh
Q 013431 387 SNAIVTFAFSPLK------ELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 442 (443)
Q Consensus 387 g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (443)
+..+++.+.+.+. +..++...|++.+++++++.++.+.+.+|+|+++.+|.+++.+
T Consensus 412 g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred HHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 9998877765443 5677778888888887777777777789999998888877654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=309.59 Aligned_cols=411 Identities=34% Similarity=0.592 Sum_probs=302.6
Q ss_pred CCCcchhhhhhcch--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc---chH
Q 013431 12 HCSRPSLVAQLGST--------FRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---PGL 80 (443)
Q Consensus 12 ~~~~p~i~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~ 80 (443)
....|.+..+++.+ ..+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.+++.+. .++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV 127 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 34467777888777 8999999999999999999999999999999999999999999999999654 456
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccCCccchHHHHhhhhHHH
Q 013431 81 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG---SFQINAVGGWRYMYGLSAPLA 157 (443)
Q Consensus 81 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~---~~l~~~~~~wr~~f~~~~~~~ 157 (443)
+.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++ ....+.. +||+.|++.++..
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~w~~~f~~~~~~~ 206 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL-GWRIPLGLQLIPA 206 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCc-cHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999 6655555 9999999977777
Q ss_pred HHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhc
Q 013431 158 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 237 (443)
Q Consensus 158 ~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (443)
++..+..+++||+|++...++ +.+++.+..+...+.++.+.......+ ......+ .+.+..+..+.+.+
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 275 (481)
T TIGR00879 207 GLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGEDKELLDELE-LIDIKRS-IEKRSVQPSWGSLF 275 (481)
T ss_pred HHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCcHHHHHHHH-HHHHHHH-HHHhhccccHHHHH
Confidence 777777788999998765421 111222222222221111111000000 0000000 00001111133333
Q ss_pred cCC--chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEeh
Q 013431 238 QGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 315 (443)
Q Consensus 238 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 315 (443)
+.. ..+.......+..+..........++.|.+.++.|.+. ...+.......++.+++.++.++++||++||+.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 354 (481)
T TIGR00879 276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI 354 (481)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 322 23444554555555555555667788899999888887 778888888899999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHH
Q 013431 316 GVCGIALSLLLLSAYYKILGGF-----PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 390 (443)
+..+.+++.+.+........+. ....+....+..++++....+....+..|.+|++.|+++.|+.+...++++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i 434 (481)
T TIGR00879 355 GAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI 434 (481)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666555322111111 33334444555556666666777788899999999999999999999999999
Q ss_pred HHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhccccCCCCCHH
Q 013431 391 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 435 (443)
Q Consensus 391 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (443)
+|.+.+.+.++.|+...|++.+++++++.++.++..+|+++++.+
T Consensus 435 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 435 VGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999998888888888777777887766554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=292.17 Aligned_cols=386 Identities=16% Similarity=0.124 Sum_probs=297.2
Q ss_pred CCCCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 013431 8 ALPSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGR 87 (443)
Q Consensus 8 ~~~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 87 (443)
..+.+.+.|.+.+|.++|.+|+|++.+++.+.|.++-.+.|.++||.+.|+.+..++++.++..++++++++.+.+.+.-
T Consensus 45 RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~ 124 (448)
T COG2271 45 RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLW 124 (448)
T ss_pred HHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhh--hcccCCccchHHHHhhhhHHHHHHHH-HH
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQINAVGGWRYMYGLSAPLALLMGI-GM 164 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--~~l~~~~~~wr~~f~~~~~~~~~~~~-~~ 164 (443)
+++|+.+|..+|.+...++.|++++|||+..++++++.++|..+.|++. +++..+. +||..|++.++++++..+ .+
T Consensus 125 ~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~~ 203 (448)
T COG2271 125 VLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALILL 203 (448)
T ss_pred HHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 8877777 999999999999988755 45
Q ss_pred hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhH
Q 013431 165 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 244 (443)
Q Consensus 165 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (443)
+..+|+|+-.- -++.++..+++.+.. ++.++.+.....+.-.+.+++||..|.
T Consensus 204 ~~~rd~Pqs~G--------------------------LP~ie~~~~d~~e~~-~~~~~~~~ls~~~i~~~YVL~Nk~iW~ 256 (448)
T COG2271 204 FLLRDRPQSEG--------------------------LPPIEEYRGDPLEIY-EEEKENEGLTAWQIFVKYVLKNKLIWL 256 (448)
T ss_pred HHhCCCccccC--------------------------CCCHHHhhcCchhhh-hhhccCCCccHHHHHHHHHHcChHHHH
Confidence 56777774110 000000000000000 000000001112223566889999999
Q ss_pred HHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCceEEehhhHHHHH
Q 013431 245 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCGIAL 322 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~ 322 (443)
+.++..+.+..-.. +..|.|.|+.+...-+..++....+.+-.++++|.++.|+++||+ |||....+.+.+...
T Consensus 257 la~a~vfvYivR~g----i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 257 LALANVFVYVVRYG----INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHH----HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 99888888877754 889999999886655558999999999999999999999999996 455544433332222
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHH-HHHHHHHhhHHHHHh
Q 013431 323 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPLKEL 401 (443)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~ 401 (443)
..+..... ..+.+......++...++...+...+.-....|..|++..|++.|+...+.++ |.+.+....|++.|.
T Consensus 333 ~~~~~~w~---~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 333 ASLVLYWL---APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHc---CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 22222221 11223344444444455554444444556778999999999999999999999 889999999999999
Q ss_pred hccchhhhHHHHHHHHHHHHhhhcccc
Q 013431 402 LGAENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 402 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
+||...|.++.+.++++.+++....+.
T Consensus 410 ~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 410 WGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888888877766555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=283.14 Aligned_cols=352 Identities=24% Similarity=0.257 Sum_probs=279.9
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
+|++++|+|+|..+.|++.|.|.++++++.++...+.||+.||++++..+.++.++.+++++++||+.++++|++.|+..
T Consensus 36 Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~ 115 (394)
T COG2814 36 LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAH 115 (394)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCChHH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRW 173 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~~~ 173 (443)
|..++...++..+..|+++|++++++...+.+++..+|.+++.++-+.. |||..|+..+.++++..+.. ..+| |+.
T Consensus 116 G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GWR~~F~~ia~l~ll~~~~~~~~lP--~~~ 192 (394)
T COG2814 116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRATFLAIAVLALLALLLLWKLLP--PSE 192 (394)
T ss_pred HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhCC--Ccc
Confidence 9999999999999999999999999999999999999999999998888 99999999999999886644 5677 210
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
...+.+.+..+..+++|+|..+...+...+..
T Consensus 193 ------------------------------------------------~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~ 224 (394)
T COG2814 193 ------------------------------------------------ISGSLPGPLRTLLRLLRRPGVLLGLLATFLFM 224 (394)
T ss_pred ------------------------------------------------CCCCCCcchhHHHHHhcCchHHHHHHHHHHHH
Confidence 00011122234567889998888776555554
Q ss_pred HHHHhCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 332 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (443)
..++ ....|...++++. |++. ...++....++++.++|+.++|++.|| +.|+.+.....+.++....+.+..
T Consensus 225 ~g~F----~~ftYi~P~L~~v~g~s~-~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~- 297 (394)
T COG2814 225 TGHF----ALYTYIRPFLESVAGFSV-SAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG- 297 (394)
T ss_pred cchh----hhHHhHHHHHHHccCCCH-hHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-
Confidence 4433 3555666666654 5554 889999999999999999999999999 888888777777777666655432
Q ss_pred HhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHH
Q 013431 333 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 412 (443)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 412 (443)
++.+.......+ .+...............+.. ++.+..+.+++....++|..+|..+.|.+.|+.|+....+..+
T Consensus 298 ---~~~~~~~~~~~~-wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a 372 (394)
T COG2814 298 ---ASPALALALLFL-WGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGA 372 (394)
T ss_pred ---chHHHHHHHHHH-HHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 223333322222 22222222222223344433 4889999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhhccccC
Q 013431 413 AIAFLAVLFIVRTVPET 429 (443)
Q Consensus 413 ~~~~~~~~~~~~~~~~~ 429 (443)
.+.+++..+.....+.+
T Consensus 373 ~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 373 ALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88888777665544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=310.93 Aligned_cols=392 Identities=24% Similarity=0.308 Sum_probs=288.6
Q ss_pred CCcchhhhhhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013431 13 CSRPSLVAQLGST---FRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 89 (443)
Q Consensus 13 ~~~p~i~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 89 (443)
...|.+.+|+|++ +.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4568899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 169 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 169 (443)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+..+++||
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999987653 5999999999988888777788999
Q ss_pred ChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHH
Q 013431 170 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 249 (443)
Q Consensus 170 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (443)
+|+|+.. +++.+++.+.+++..+.+......+....+.. ++.++++++.+.++++++|.++...+..
T Consensus 266 sp~~l~~---------~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (505)
T TIGR00898 266 SPRWLIS---------QGRIEEALKILQRIAKINGKKLPAEVLSLSLE----KDLSSSKKQYSFLDLFRTPNLRKTTLCL 332 (505)
T ss_pred ChHHHHH---------CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh----hhhhhccCCCcHHHHhCChHHHHHHHHH
Confidence 9999875 33445555555554443332221111111000 0001112235678899999888777665
Q ss_pred HHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHH
Q 013431 250 GLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 329 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 329 (443)
...++.....+.. .+.+..+.+.+ ........++..+++.++.+++.||+|||+.+..+..+.+++.+++..
T Consensus 333 ~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~ 404 (505)
T TIGR00898 333 MMLWFTTAFSYYG----LVLDLGNLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF 404 (505)
T ss_pred HHHHHHHHHHHHH----HhccccccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555443222211 22223333332 234445667788899999999999999999988877777666655543
Q ss_pred HHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhh
Q 013431 330 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFL 409 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 409 (443)
.. ....+......++..++... ..+..+.+..|.+|++.|++++|+.++...+|+.++|.+.+ + +..+...++.
T Consensus 405 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~ 478 (505)
T TIGR00898 405 VP---VDLYFLRTALAVLGKFGITS-AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLV 478 (505)
T ss_pred cC---CCchHHHHHHHHHHHHHHHH-HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHH
Confidence 21 11112222222232222222 33455588899999999999999999999999999999988 4 4456667777
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCHHH
Q 013431 410 LFAAIAFLAVLFIVRTVPETKGLSLEE 436 (443)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
++++..+++.+.. .+.||+++++++|
T Consensus 479 ~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 479 LFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 7777777666544 4568888776543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=300.38 Aligned_cols=403 Identities=39% Similarity=0.620 Sum_probs=329.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhh
Q 013431 27 RLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 106 (443)
Q Consensus 27 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 106 (443)
++.+++.+...++.+++++++|+++|++|||+.++++.+.+.++.+++++++|+++++++|+++|+|.|........+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchh
Q 013431 107 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQ 186 (443)
Q Consensus 107 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~ 186 (443)
|..|++.||...+..+....+|..++..++....+...+||..+.+..+++++..+..+++||||+|+.+ +
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~---------~ 239 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE---------K 239 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH---------c
Confidence 9999999999999999999999999966666544321289999999999999988888899999999987 6
Q ss_pred hHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhh
Q 013431 187 EYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 266 (443)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (443)
++.+++++.+.+.+..++.+...+ .+....+...+....+.+..+.++++....++..++..+..+.+.++++...+|
T Consensus 240 g~~~~a~~~l~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y 317 (513)
T KOG0254|consen 240 GRLEEAKRSLKRLRGLSPEDVEVE--LELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYY 317 (513)
T ss_pred CChHHHHHHHHHHhCCCCcchHHH--HHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEee
Confidence 788889998888887442222221 111111111111111122245666665566678888999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhc-------cchh
Q 013431 267 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-------GFPL 339 (443)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 339 (443)
.+.+++..+..++. .......++...++..+...+.||+|||+.++.+...+.++.++++....... ...+
T Consensus 318 ~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
T KOG0254|consen 318 STTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGW 395 (513)
T ss_pred hHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhH
Confidence 99999999988633 66667777888888888899999999999999999999998888876654432 2245
Q ss_pred HHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHH
Q 013431 340 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 419 (443)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 419 (443)
..+...+++...+..+..++.+.+.+|.+|.+.|+++.++....++....+....+..+.+..+....|..+++++.+..
T Consensus 396 ~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~ 475 (513)
T KOG0254|consen 396 LAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSL 475 (513)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 66777788888889999999999999999999999999999999999888887777666666554566777777777777
Q ss_pred H-HhhhccccCCCCCHHHHHhhhh
Q 013431 420 L-FIVRTVPETKGLSLEEIESKIL 442 (443)
Q Consensus 420 ~-~~~~~~~~~~~~~~~~~~~~~~ 442 (443)
. ..++..||+|+++.+|+++..+
T Consensus 476 ~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 476 IIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred HHHheEEcccCCCCcHHHHHHHHH
Confidence 6 6788899999999999987654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=290.01 Aligned_cols=361 Identities=16% Similarity=0.098 Sum_probs=268.2
Q ss_pred CCCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 013431 9 LPSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 88 (443)
Q Consensus 9 ~~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 88 (443)
...+...|++++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
++|++.+...+...+++.|++| ++|+++++++..+..+|..+++.+++++.++..+||..+.+.++..++..+..+...
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997 789999999999999999999999998877655899988776665544433332221
Q ss_pred -CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHH
Q 013431 169 -PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 247 (443)
Q Consensus 169 -es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
+.|+ ++ + ++ +...++.+++++.+...+
T Consensus 185 ~~~~~---------------------------------~~---------------~-~~---~~~~~~~l~~~~~~~l~~ 212 (393)
T PRK09705 185 AREVA---------------------------------SS---------------H-KT---TTTPVRVVFTPRAWTLGV 212 (393)
T ss_pred cCCCc---------------------------------cc---------------c-CC---CcCCcccccCHhHHHHHH
Confidence 1110 00 0 00 001233445565555443
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
...+... .+.....|.|.++++.+.+. .+.+.......++.++++++.+++.||.+||+....+..+..++...+
T Consensus 213 ~~~~~~~----~~~~~~~~lp~~l~~~g~s~-~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~ 287 (393)
T PRK09705 213 YFGLING----GYASLIAWLPAFYIEIGASA-QYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF 287 (393)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 3333222 33346778888888877765 788889999999999999999999999999988877766655555443
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeeccc-CccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-cc
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF-PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AE 405 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 405 (443)
.... ..... .. ..+...+.+ ...+.......+.. |++++++..|+.+...++++.++|.+.|++.|..| +.
T Consensus 288 ~~~~----~~~~~-~~-~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 360 (393)
T PRK09705 288 IWLP----LQLPV-LW-AMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYL 360 (393)
T ss_pred HHcc----chHHH-HH-HHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 3211 11111 11 112222222 22233333444555 46789999999999999999999999999999987 55
Q ss_pred hhhhHHHHHHHHHHHHhhhccccCCCCCH
Q 013431 406 NIFLLFAAIAFLAVLFIVRTVPETKGLSL 434 (443)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (443)
..|.+.+..+++..+..+...+|++++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 361 MDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 66766666666666666677777766543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=290.59 Aligned_cols=348 Identities=18% Similarity=0.151 Sum_probs=264.5
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
..|.+++|+|.|+++.|++.+.+.+++.++++++|+++||+||||++..+..+.+++++++++++|++.++++|+++|++
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 110 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFA 110 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCChH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPR 172 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~~ 172 (443)
.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+.. +||+.|++.++++++..+.. ..+||+|+
T Consensus 111 ~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~l~~~~~~~~~~~~~~ 189 (390)
T PRK03545 111 HAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIGGGALITLLLLIKLLPLLPS 189 (390)
T ss_pred HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999988777 99999999988877665443 34555331
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHH
Q 013431 173 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 252 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (443)
. ++++.++.++.+|+|.++.......+.
T Consensus 190 ~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (390)
T PRK03545 190 E----------------------------------------------------HSGSLKSLPLLFRRPALVSLYLLTVVV 217 (390)
T ss_pred C----------------------------------------------------CcchHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 000011245677888766554433333
Q ss_pred HHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHH
Q 013431 253 LFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 331 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
..... ....+.+.++++ .+.+. .+.+.......++.++++++.+++.||+++|+. ..+..+...+...+...
T Consensus 218 ~~~~~----~~~~~~~~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~- 290 (390)
T PRK03545 218 VTAHF----TAYSYIEPFVQQVAGLSE-NFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPA- 290 (390)
T ss_pred HHHHH----HHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHH-
Confidence 32222 133455556665 45555 778888888899999999999999999987754 33333333333322211
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHH
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 411 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (443)
.++.+... ...+..+.......+.......|..| +.+++++|+.+...++|..+||.+.|.+.|..|++..+...
T Consensus 291 ---~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~ 365 (390)
T PRK03545 291 ---ANSEWHLS-VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVG 365 (390)
T ss_pred ---hchHHHHH-HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 12222222 23333333333333334456667766 68899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhcc
Q 013431 412 AAIAFLAVLFIVRTV 426 (443)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (443)
+.+.+++.+..+...
T Consensus 366 ~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 366 AALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888777665544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=295.12 Aligned_cols=373 Identities=18% Similarity=0.198 Sum_probs=247.7
Q ss_pred CcchhhhhhcchhhH----HHH--HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHH-----
Q 013431 14 SRPSLVAQLGSTFRL----FSL--ALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV----- 82 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~----~g~--~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~----- 82 (443)
..|.+.++++.+.++ .+. +.++..+++.++++++|+++||+|||+++.+++++++++++++++++|++.
T Consensus 38 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a 117 (490)
T PRK10642 38 VAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWA 117 (490)
T ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 357788888643322 222 257888999999999999999999999999999999999999999999875
Q ss_pred ---HHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc--------CCccchHHHHh
Q 013431 83 ---LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMYG 151 (443)
Q Consensus 83 ---l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~~wr~~f~ 151 (443)
++++|+++|++.|..++...+++.|++|+++|+++.++...+..+|..+++.+...+. ... |||+.|+
T Consensus 118 ~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~-gWR~~f~ 196 (490)
T PRK10642 118 PILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDW-GWRIPFF 196 (490)
T ss_pred HHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCc-cHHHHHH
Confidence 8999999999999999999999999999999999999999888888888886654332 234 9999999
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhcccccccccccc
Q 013431 152 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG 231 (443)
Q Consensus 152 ~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (443)
+.++++++..++...+||+|+|...++. .++. +. + . ..++++.
T Consensus 197 i~~~~~l~~~~~~~~~~esp~~~~~~~~---------~~~~----------~~-~----------------~-~~~~~~~ 239 (490)
T PRK10642 197 IALPLGIIGLYLRHALEETPAFQQHVDK---------LEQG----------DR-E----------------G-LQDGPKV 239 (490)
T ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHh---------hhhh----------cc-c----------------c-ccccccC
Confidence 9887777666666788999986432100 0000 00 0 0 0001122
Q ss_pred chhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 013431 232 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR 310 (443)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 310 (443)
++++++++ +.+........ .+.....++....|.|.++++ .+.+. ...........++.+++.++.|+++||+|||
T Consensus 240 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 316 (490)
T PRK10642 240 SFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSE-DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR 316 (490)
T ss_pred CHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 35555553 22222222212 222223334566788888865 46655 5566677777888999999999999999999
Q ss_pred eEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHH
Q 013431 311 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 390 (443)
+.+..+.++..+....+.... .............+...+.+.... ....+..|.+|++.|+++.|+.+.....++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~ 393 (490)
T PRK10642 317 PFVILGSVALFVLAIPAFILI--NSNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGL 393 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHH
Confidence 977666543333222211111 111122222222222222222222 23356778999999999999876667777889
Q ss_pred HHHhhHHHHHhhc-cchhhhHHHHHHHHHHHHhhhccccCCC
Q 013431 391 VTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPETKG 431 (443)
Q Consensus 391 ~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (443)
+|.+.+.+.+..+ +..++....+.++++.+.. ++.||+++
T Consensus 394 ~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~ 434 (490)
T PRK10642 394 TPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccC
Confidence 9999999988765 4445554444444444433 34466543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=291.04 Aligned_cols=350 Identities=17% Similarity=0.158 Sum_probs=257.0
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
..|.+++++|+|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++
T Consensus 40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g 119 (426)
T PRK12307 40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMG 119 (426)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 173 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~ 173 (443)
.+...+....++.|++|+|+|+++.++...+.++|.++++.+.+.+.+.. +||+.|++..+..++........||++++
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w~~~f~i~~~~~~~~~~~~~~~p~~~~~ 198 (426)
T PRK12307 120 MAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GWRAAFFVGLLPVLLVIYIRARAPESKEW 198 (426)
T ss_pred HhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CHHHHHHHHHHHHHHHHHHHHHCCCChHH
Confidence 99999999999999999999999999999999999999999998887777 99999988654444333333345665543
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
...+. +++++ . ++...+....+++++++++.++..........
T Consensus 199 ~~~~~---------------------~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (426)
T PRK12307 199 EEAKL---------------------SGKGK-H---------------SQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLF 241 (426)
T ss_pred HHhhh---------------------hcccc-c---------------cccchhhhhHHHHHHHhhchHHHHHHHHHHHH
Confidence 11100 00000 0 00000011224667788877665444332222
Q ss_pred HHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (443)
. ..........+.|.++++.+.+. ...+.......++.++++++.+++.||++||+....+..+..+....+...
T Consensus 242 ~-~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--- 316 (426)
T PRK12307 242 S-IFGANWPIFGLLPTYLAGEGFDT-GVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI--- 316 (426)
T ss_pred H-HHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---
Confidence 2 22222235567888888877765 677788888889999999999999999999988776665554444333221
Q ss_pred hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchh
Q 013431 334 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 407 (443)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 407 (443)
............+..+....+..+....++.|.+|++.|++++|+.+....+++.++|.+.|.+.+..|+...
T Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 317 -PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred -ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 1112222211222121222222333446678999999999999999999999999999999999999886543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=283.28 Aligned_cols=347 Identities=17% Similarity=0.075 Sum_probs=245.6
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
....|.+++|+|+|++|.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|++.++++|+++|
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA 90 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999877665555444433333479999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCCCC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPS 170 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es 170 (443)
++.+. .+.....+.|++|+++|++++++.+.+..+|..+++++++++.+.. |||+.|++.++++++..+ ..+++||+
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~~~~~lp~~ 168 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIILVLAALPAL 168 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99986 5566666799999999999999999999999999999999988877 999999998888776654 45578888
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
|++.. +..+. ++ ..+++++++++|.++...+...
T Consensus 169 p~~~~------------------------------~~~~~---~~-------------~~~~~~~ll~~~~~~~~~~~~~ 202 (368)
T TIGR00903 169 PFQAA------------------------------EGFGF---KD-------------AVKEFGALAGRKDLWIIGAILG 202 (368)
T ss_pred CCCCC------------------------------CCcch---HH-------------HHHHHHHHHcChhHHHHHHHHH
Confidence 74200 00000 00 0013567888888877775554
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc---eEEeh-hhHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR---PLLIG-GVCGIALSLLL 326 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~ 326 (443)
+..... ..+..|.|.++++.+++. . .+.......+.+.++ .++++||.+|| +.... .....++....
T Consensus 203 ~~~~~~----~~~~~wlp~~L~~~g~s~-~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~ 273 (368)
T TIGR00903 203 FGVALF----DNLAIWLEAALRPAGLED-I-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLA 273 (368)
T ss_pred HHHHHH----HHHHHHHHHHHHHCCCCh-H-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444443 347789999998877654 3 555555555555555 46777776553 32221 22222222222
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccch
Q 013431 327 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAEN 406 (443)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 406 (443)
+.. ..+...... .....+.......+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. |...
T Consensus 274 ~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~ 345 (368)
T TIGR00903 274 LAF-----ELNRLALFA-FIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEA 345 (368)
T ss_pred HHH-----ccccHHHHH-HHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHH
Confidence 221 112222222 22222222333334455788999999999999999999999999999999988774 6667
Q ss_pred hhhHHHHHHHHHHHHhh
Q 013431 407 IFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (443)
.|..+++..+++.+...
T Consensus 346 ~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 346 YFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78878777777766554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=291.56 Aligned_cols=381 Identities=14% Similarity=0.101 Sum_probs=269.1
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
+...|.+.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|
T Consensus 43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 122 (434)
T PRK11663 43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNA 122 (434)
T ss_pred HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHH-HHHhcCCCC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG-IGMWSLPPS 170 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~es 170 (443)
++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++++.+.. +||+.|++.+++.++.. +..++++|+
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999988877 99999999888776554 344567887
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccc-h-hhhccCCchhHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS-F-LEVFQGPNLKAFIIG 248 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 248 (443)
|++...+ +. ++.++ +..+. .++..+++.+..+ + ...++++.++...+.
T Consensus 202 p~~~~~~---~~----~~~~~-----------------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (434)
T PRK11663 202 PQAMGLP---SV----GEWRH-----------------DALEL------AQQQEGAGLSRKEILTKYVLLNPYIWLLSFS 251 (434)
T ss_pred HhhcCCC---Cc----ccccc-----------------ccccc------chhccccCCChhhhHHHHHhcChHHHHHHHH
Confidence 7531000 00 00000 00000 0000000000011 1 125566766665544
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC--CceEEehh-hHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGG-VCGIALSL 324 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~-~~~~~~~~ 324 (443)
..+..... ..+..|.|.++++ .|.+. .+.+.......++..+++++.|+++||+. +|+..... ........
T Consensus 252 ~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~ 326 (434)
T PRK11663 252 YVLVYVVR----AAINDWGNLYMSETLGVDL-VTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV 326 (434)
T ss_pred HHHHHHHH----HHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHH
Confidence 33333322 3466788888854 56665 77888888999999999999999999983 33332221 11111121
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 404 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 404 (443)
..+... ... .........+..+...............|.+|++.|+++.|+.++..++|.+++|.+.|.+.|..|+
T Consensus 327 ~~~~~~---~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~ 402 (434)
T PRK11663 327 GSLWLM---PFA-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW 402 (434)
T ss_pred HHHHHc---ccc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc
Confidence 111111 111 1112212222222222211112224567889999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHhhhccccCCCC
Q 013431 405 ENIFLLFAAIAFLAVLFIVRTVPETKGL 432 (443)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (443)
...|...+++.+++.+..+...++++++
T Consensus 403 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 403 TGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 9999988888877776665555554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=296.69 Aligned_cols=378 Identities=16% Similarity=0.082 Sum_probs=263.1
Q ss_pred CCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc-----cchHHHHH
Q 013431 10 PSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLL 84 (443)
Q Consensus 10 ~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~ 84 (443)
..+...|.+.+|+|++..+.|++.+.+.+++++++++.|+++||+|||+++..+.++++++.+..++ ++|++.++
T Consensus 47 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (467)
T PRK09556 47 NFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMI 126 (467)
T ss_pred ChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 4556789999999999999999999999999999999999999999999998888888777766554 68999999
Q ss_pred HHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc--cchHHHHhhhhHHHHHHHH
Q 013431 85 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV--GGWRYMYGLSAPLALLMGI 162 (443)
Q Consensus 85 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--~~wr~~f~~~~~~~~~~~~ 162 (443)
+.|+++|++.+...|...+++.||+|+++|++++|+...+.++|.++++++..++.+.. .+||..|.+.++++++..+
T Consensus 127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i 206 (467)
T PRK09556 127 ALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGF 206 (467)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887655432 2699999888887776654
Q ss_pred HH-hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccc-hhhhccCC
Q 013431 163 GM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQGP 240 (443)
Q Consensus 163 ~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 240 (443)
.. ++.+++|+... ..+. ++ . ..+.. . . ++. .++.++...... .++.+++|
T Consensus 207 ~~~~~~~~~p~~~~---------~~~~-~~---~---~~~~~-----~-~--~~~----~~~~~~~~~~~~~~~~~l~~~ 258 (467)
T PRK09556 207 IGLRYGSDSPEELG---------WGKA-EE---I---FGEPI-----S-E--EDK----ETESTDMTKWQIFVEYVLKNP 258 (467)
T ss_pred HHHHhCCCChhhcC---------CCCh-hh---c---ccCcc-----c-h--hhh----ccccccCcHHHHHHHHHHcCh
Confidence 44 44566663100 0000 00 0 00000 0 0 000 000000000011 12367888
Q ss_pred chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH
Q 013431 241 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 319 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 319 (443)
.+|...+...+..... .....|.|.++++ .|.+. .+++.......++.+++.++.|+++||++||+........
T Consensus 259 ~~~~~~~~~~~~~~~~----~~~~~~~p~yl~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~ 333 (467)
T PRK09556 259 VIWLLCFANIFLYIVR----IGIDNWSPVYAFQELGFSK-EDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL 333 (467)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 7776665444333332 3467789988866 56655 7788888888899999999999999999999876554333
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHH-HHHHHHHhhHHH
Q 013431 320 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPL 398 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l 398 (443)
..+....+.. . . ..+........+..+....+..........|.+|++.+|++.|+.+...++ |.+++|.+.|.+
T Consensus 334 ~~~~~~~~~~-~--~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i 409 (467)
T PRK09556 334 ALIIFTLGVY-Q--H-ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMI 409 (467)
T ss_pred HHHHHHHHHH-H--h-cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence 3322222111 1 1 112222222222222221111111124556999999999999999999987 779999999999
Q ss_pred HH------------hhccchhhhHHHHHHHHHHHHhhh
Q 013431 399 KE------------LLGAENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 399 ~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 424 (443)
.| ..||+..|.+..++.+++.+..+.
T Consensus 410 ~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 410 ADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred hcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99 567888888887777776655443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=285.06 Aligned_cols=374 Identities=17% Similarity=0.202 Sum_probs=257.2
Q ss_pred CCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013431 11 SHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 11 ~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 90 (443)
.+...|.+++|+|+|.++.|++.+.+.+++++++++.|+++||+|||+++..++++++++++++++++|++.+++.|+++
T Consensus 27 ~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 106 (412)
T TIGR02332 27 IGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILV 106 (412)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC-----ccchHHHHhhhhHHHHHHHH-HH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA-----VGGWRYMYGLSAPLALLMGI-GM 164 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-----~~~wr~~f~~~~~~~~~~~~-~~ 164 (443)
|++.+...|....++.|++|+++|++++++++.+.++|..+++++++++.+. ..|||+.|++.++++++..+ ..
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 107 GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887532 23899999998888876644 45
Q ss_pred hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhH
Q 013431 165 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 244 (443)
Q Consensus 165 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (443)
+++||+|+.. +... +++.+...+ ..+......+.++.. . ..+..+.+..+++++ ++.++.
T Consensus 187 ~~~~~~p~~~------~~l~-~~~~~~~~~---~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~-~~~~~~ 246 (412)
T TIGR02332 187 FWLDDSPDKA------KWLD-EEDKKALKE---MIDNDQLTLEQPEGA-------F--AHAAMPQRSMLREIF-TPAIML 246 (412)
T ss_pred hccCCCcccC------CCCC-HHHHHHHHH---HHHhccccccccccc-------c--ccccccHHHHHHHhc-ChHHHH
Confidence 6778887410 0000 000111111 111000000000000 0 000000111233333 354444
Q ss_pred HHHHHHHHHHHHHhCchhhHhhHHHHHHhcCC-CCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEe-hhhHHHHH
Q 013431 245 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGF-SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI-GGVCGIAL 322 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~ 322 (443)
..+.. +.....+..+..|.|.++++.+. .+..+.+.......++.+++.++.|+++||+++|+... .......+
T Consensus 247 ~~~~~----~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~ 322 (412)
T TIGR02332 247 YTLAY----FCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAA 322 (412)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHH
Confidence 33322 22223344577899999988532 23367788889999999999999999999999876532 22222222
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 013431 323 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 402 (443)
+. .+... ............+ .+.......+..+....|.+|+++|+++.|+.+...++|++++|.+.|.+.|..
T Consensus 323 ~~-~~~~~----~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~ 396 (412)
T TIGR02332 323 GW-LLASA----TDHNLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT 396 (412)
T ss_pred HH-HHHHh----cCCHHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC
Confidence 22 11111 1122221111111 111111122333355577889999999999999999999999999999999988
Q ss_pred c-cchhhhHHHHH
Q 013431 403 G-AENIFLLFAAI 414 (443)
Q Consensus 403 g-~~~~~~~~~~~ 414 (443)
| |...+...+++
T Consensus 397 g~~~~~~~~~~~~ 409 (412)
T TIGR02332 397 GSFNSGLWFVAAL 409 (412)
T ss_pred CCCchhHHHHHHH
Confidence 6 77777665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=285.13 Aligned_cols=381 Identities=17% Similarity=0.180 Sum_probs=274.4
Q ss_pred CCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013431 10 PSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 89 (443)
Q Consensus 10 ~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 89 (443)
......|.+.+++|.++.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++..++++++|++.++++|++
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL 91 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLP 168 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~ 168 (443)
.|++.+...+...+++.|++|+++|++++++.+...++|..+++.+++.+.+.. +||+.|++.++..++..+.. +..|
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHhhheec
Confidence 999999999999999999999999999999999999999999999999888777 89999999888877765544 3456
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|+|+. ++ ..+++++. ...+.... +.++..+++++..+.++.+++|+++...+.
T Consensus 171 ~~~~~-------~~--~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (399)
T TIGR00893 171 DPPQK-------AK--WLTEEEKY-IVVGGLLA-----------------EQQGKGPSTPKKYQIKELLKDRRVWGLALG 223 (399)
T ss_pred CCCCc-------cc--cCCHHHHh-hcchhhcc-----------------ccccccccCCCccchHHHhcCHHHHHHHHH
Confidence 55420 00 00000000 00000000 000011122233456777888877666554
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhh-HHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV-CGIALSLLLL 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-~~~~~~~~~~ 327 (443)
..+..... .....+.|.++++....++.+.+.......++.+++.++.+++.||++||+...... .....+.+..
T Consensus 224 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 224 QFLVNIGL----GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHhHH----HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 44443333 346667788876643333477888888999999999999999999999986322211 1111111111
Q ss_pred HHHHHHhc-cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-cc
Q 013431 328 SAYYKILG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AE 405 (443)
Q Consensus 328 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 405 (443)
........ .......... ...+....+..+..+.+..|..|+++|+++.|+.+...+++..++|.+.|.+.|..| +.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~ 378 (399)
T TIGR00893 300 SLLMFATNYVNIPYAALAL-VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA 378 (399)
T ss_pred HHHHHHhccchhHHHHHHH-HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence 11111001 1122222222 222223333556677889999999999999999999999999999999999999988 88
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 013431 406 NIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~ 423 (443)
..+...+++.+++.+..+
T Consensus 379 ~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 379 GALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877777776665443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=284.61 Aligned_cols=355 Identities=17% Similarity=0.042 Sum_probs=266.8
Q ss_pred CCCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 013431 9 LPSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 88 (443)
Q Consensus 9 ~~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 88 (443)
.......|.+++++|+|+++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++|++.++++|+
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYG 99 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SL 167 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~ 167 (443)
+.|++.+...+.....+.|++| |+|+++.++...+.++|..+++++.+.+.+.. +||+.|++.+++.++..+..+ ++
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 100 LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999888888888999987 67999999999999999988777776666666 899999999988877765544 44
Q ss_pred CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHH
Q 013431 168 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 247 (443)
Q Consensus 168 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
+|+|+. ++ +++ + +.++++.+.++.++++.++...+
T Consensus 178 ~~~~~~-------------~~------------~~~--~------------------~~~~~~~~~~~~~~~~~~~~~~~ 212 (377)
T TIGR00890 178 GYPPGQ-------------LI------------KTN--I------------------EVSVKDYTVWEMLRTPQFWVLYL 212 (377)
T ss_pred ecCchh-------------cc------------ccC--c------------------ccchhhhhHHHHHcCccHHHHHH
Confidence 443210 00 000 0 00001123456677777766554
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
......+.. .....+.+.+.++.+.++ .+.+.......+..++++++.+++.||++||+.+..+.....++...+
T Consensus 213 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 287 (377)
T TIGR00890 213 SFFLNAVSG----LLLIGLYKPYGQSLGLSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM 287 (377)
T ss_pred HHHHHhHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 433333222 123345555667777654 677888888999999999999999999999998887777666665554
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchh
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 407 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 407 (443)
.... ..............+.......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..|++..
T Consensus 288 ~~~~----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 363 (377)
T TIGR00890 288 LFIP----MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYT 363 (377)
T ss_pred HHcc----cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH
Confidence 4321 111111211122222222223334446788999999999999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHH
Q 013431 408 FLLFAAIAFLAV 419 (443)
Q Consensus 408 ~~~~~~~~~~~~ 419 (443)
|.+.+++.+++.
T Consensus 364 f~~~~~~~~~~~ 375 (377)
T TIGR00890 364 FIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHhc
Confidence 888777666543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=282.55 Aligned_cols=354 Identities=22% Similarity=0.249 Sum_probs=259.8
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
+...|.+.+++|.|+++.|++.+.+.++..+++++.|+++||+|||+++..+..+..++.+++++++|++.+++.|++.|
T Consensus 35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 114 (406)
T PRK11551 35 GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTG 114 (406)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCCCC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPS 170 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es 170 (443)
++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+.. +||+.|++.++..++..+ ...++||+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 115 VGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA-AWRHIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred hhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999998877766 899999988776655544 44567887
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCC---chhHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP---NLKAFII 247 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 247 (443)
|++...++ + .+ + ++...+..++++ ..+....
T Consensus 194 ~~~~~~~~---~------~~------------------~-------------------~~~~~~~~~~~~~~~~~~~~~~ 227 (406)
T PRK11551 194 RAFAQAAG---A------GK------------------Q-------------------RAPVLRALFGEGRATATLLLWI 227 (406)
T ss_pred hhHHhccC---c------ch------------------h-------------------hhhhHHHHhhhhhhhHHHHHHH
Confidence 75321100 0 00 0 000001111111 1111221
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
...... ........|.|.++++.|.+. .+.+.......++.++++++.|++.||++||+.+..+.....++...+
T Consensus 228 ~~~~~~----~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 228 SYFFTL----IVLYFLLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 111111 122345667888888887766 778888889999999999999999999999988776555444444333
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccc-h
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAE-N 406 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~ 406 (443)
... ++.+. .....+..+....+..+..+++..|.+|+++|+++.|+.+....++..++|.+.|.+.+..+.. .
T Consensus 303 ~~~-----~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~ 376 (406)
T PRK11551 303 AAA-----PSFAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVG 376 (406)
T ss_pred Hhc-----CcHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHH
Confidence 221 22222 2222233333333344455578889999999999999999999999999999999999876543 3
Q ss_pred hhhHHHHHHHHHHHHhh
Q 013431 407 IFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (443)
.+.......+++....+
T Consensus 377 ~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 377 VIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=333.03 Aligned_cols=397 Identities=34% Similarity=0.574 Sum_probs=310.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHhhhhhhhchhh
Q 013431 25 TFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGA 101 (443)
Q Consensus 25 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~ 101 (443)
+..+.+++.+...+|..+|++++|.++||+|||+.+.++..+..+++++.++++ |++.+.++|++.|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc--cchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhh
Q 013431 102 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV--GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 179 (443)
Q Consensus 102 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~ 179 (443)
..++.|..|+++|++..++.+.+..+|.+++..++....... .+||..+.+.++++++..+..+++||||+|+..
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~--- 200 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLS--- 200 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecc---
Confidence 999999999999999999999999999999988876653322 159999999999998888888899999999987
Q ss_pred cCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCc-hhHHHHHHHHHHHHHHh
Q 013431 180 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQIT 258 (443)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 258 (443)
+++.|++++.+++.++.+..++..++. .++ .++.++++.+++++++++. .++......+..+....
T Consensus 201 ------~~~~~~A~~~l~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (451)
T PF00083_consen 201 ------KGRDEEAEKVLRKLRGKEIEDEEIEEI----KAE---KKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFS 267 (451)
T ss_pred ------ccccccccccccccccccccccccccc----ccc---cccccccceeeeecccccccccccccccccccccccc
Confidence 455667777777654442222111111 111 1111111256777887765 34555555566666666
Q ss_pred CchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH-HHHHHhcc-
Q 013431 259 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS-AYYKILGG- 336 (443)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 336 (443)
++....+|.+.+.++.+.+++ ........+...++.++..++.||+|||+.++.+....+++...+. ......+.
T Consensus 268 g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T PF00083_consen 268 GINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS 344 (451)
T ss_pred ccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 666777888888888877763 3344455567777888888999999999999988887777766664 11111111
Q ss_pred --chhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHH
Q 013431 337 --FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 414 (443)
Q Consensus 337 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 414 (443)
.....+....+....+..+..+..+.+..|.+|++.|+++.|+....+++++.+++.+...+.+..+....+.+.+++
T Consensus 345 ~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 424 (451)
T PF00083_consen 345 SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGV 424 (451)
T ss_pred cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHH
Confidence 133334444445556666778888899999999999999999999999999999999999888887766778888888
Q ss_pred HHHHHHHhhhccccCCCCCHHHHHhh
Q 013431 415 AFLAVLFIVRTVPETKGLSLEEIESK 440 (443)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (443)
+++..+..+++.||+|+++.+|+++.
T Consensus 425 ~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 425 CLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 88888888899999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=277.43 Aligned_cols=354 Identities=20% Similarity=0.234 Sum_probs=236.3
Q ss_pred Ccchhhhhhc---chhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHH------
Q 013431 14 SRPSLVAQLG---STFRLFSL---ALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG------ 81 (443)
Q Consensus 14 ~~p~i~~~~~---~s~~~~g~---~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~------ 81 (443)
..|.+.+|++ .+..+.+. +.+...++..++++++|+++||+||||++..+..+++++++++++++++.
T Consensus 44 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (432)
T PRK10406 44 CSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWA 123 (432)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Confidence 4577888884 55555444 44445555559999999999999999999999999999999999998874
Q ss_pred --HHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc--------CCccchHHHHh
Q 013431 82 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMYG 151 (443)
Q Consensus 82 --~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~~wr~~f~ 151 (443)
.++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.++++.+...+. +.+ |||++|+
T Consensus 124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~F~ 202 (432)
T PRK10406 124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREW-GWRIPFA 202 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-chHHHHH
Confidence 58999999999999999999999999999999999999999888888888887654432 134 9999999
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhcccccccccccc
Q 013431 152 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG 231 (443)
Q Consensus 152 ~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (443)
+.++++++.......+||+|++... ++++..
T Consensus 203 i~~~~~ll~~~~~~~~~e~~~~~~~-------------------------------------------------~~~~~~ 233 (432)
T PRK10406 203 LGAVLAVVALWLRRQLDETSQQETR-------------------------------------------------ALKEAG 233 (432)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHh-------------------------------------------------hhcccc
Confidence 9888887766555567776642000 000112
Q ss_pred chhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 013431 232 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR 310 (443)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 310 (443)
++++++++++.+...+...+. ....+..+..|.|.++++ .+.+. .+.+.......+...++.++.|+++||++||
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~l~~~~g~s~-~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr 309 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAA---GSLCFYTFTTYMQKYLVNTAGMHA-NVASGIMTAALFVFMLIQPLIGALSDKIGRR 309 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 456677766555443322221 111223466788888765 46554 6677777777788888889999999999999
Q ss_pred eEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHH-HHH
Q 013431 311 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNA 389 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~ 389 (443)
+.+.....+.++....+..... ..+.....+....+....... ..+..+.+.+|.+|++.|+++.|+.+...+. .+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 310 TSMLCFGSLAALFTVPILSALQ-NVSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGG 387 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence 8765544433222221111111 111122212111111111111 2223446788999999999999999887664 344
Q ss_pred HHHHhhHHHHHhhc-cchhhhHHHHHHHHHHHHhhh
Q 013431 390 IVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 390 ~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 424 (443)
..|.+.+ +.+..| +...++..++..+++.+..++
T Consensus 388 ~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 388 SAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5777777 446566 434455455555555544443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=276.99 Aligned_cols=375 Identities=15% Similarity=0.118 Sum_probs=253.1
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHH
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----PGLGVLLVGRL 88 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~ 88 (443)
...|.+.++ |+|+++.|++.+.+.++++++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 128 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 356888888 9999999999999999999999999999999999999999999999999988875 37888999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHH-HHHHhhhcccCCccchHHHHhhhhHHHHHHH-HHHhc
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL-LGYFVGSFQINAVGGWRYMYGLSAPLALLMG-IGMWS 166 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~-~~~~~ 166 (443)
+.|++.+...+.....+.|++|+++|++++++.+.+.++|.. .+|+++..+.... +||+.|++.+++.++.. +..++
T Consensus 129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DWHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred HHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999898888899999999999999999999999864 4555443333333 89999999888777654 45566
Q ss_pred CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccc-hhhhccCCchhHH
Q 013431 167 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAF 245 (443)
Q Consensus 167 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 245 (443)
+||+|+.... +++ ++.. ++.+++ . .+++.++.+.+.. .+.++|++.+|..
T Consensus 208 ~~~~~~~~~~---------~~~-~~~~-------~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (452)
T PRK11273 208 MRDTPQSCGL---------PPI-EEYK-------NDYPDD----------Y--NEKHEQELTAKQIFMQYVLPNKLLWYI 258 (452)
T ss_pred ccCCHhhcCC---------CCh-hhhh-------hccccc----------c--ccccCCCccHHHHHHHHHHcChHHHHH
Confidence 7887742100 000 0000 000000 0 0000000000111 1236677777776
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC--CceEEehh-hHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGG-VCGIA 321 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~-~~~~~ 321 (443)
.+...+..... .....|.|.++++. +++. .+.+.......++.+++.++.|+++||++ ||+..... ..+..
T Consensus 259 ~l~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 259 AIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 65554444333 23667889998874 5654 67777888888999999999999999984 44332211 11122
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHH-HHHhhHHHHH
Q 013431 322 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI-VTFAFSPLKE 400 (443)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~ 400 (443)
++...+.. . .......... .....+............+..|.+|++.||+++|+.+...++++.+ +|.+.|.+.|
T Consensus 334 ~~~~~~~~--~-~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~ 409 (452)
T PRK11273 334 IATIVYWL--N-PAGNPTVDMA-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 409 (452)
T ss_pred HHHHHHHH--h-cccChHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 22222111 1 1111222222 2222222111111122245678999999999999999988888765 7999999999
Q ss_pred hhccchhhhHHHHHHHHHHHHhhhccc
Q 013431 401 LLGAENIFLLFAAIAFLAVLFIVRTVP 427 (443)
Q Consensus 401 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 427 (443)
+.|++..|.+.++.++++.+......+
T Consensus 410 ~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 410 FFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888877777665554433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=273.46 Aligned_cols=364 Identities=16% Similarity=0.179 Sum_probs=252.9
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
...|++++++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|+
T Consensus 33 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 112 (405)
T TIGR00891 33 LVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGI 112 (405)
T ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCcc-chHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
+.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ +||+.|++.++..++..+....+||++
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 113 GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999999999999999988776651 499999987776666666666788877
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
++...++ +.++..+..++..+.++ ..... .++.....++.. ++.+........
T Consensus 193 ~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~~~~~--~~~~~~~~~~~~ 245 (405)
T TIGR00891 193 DWKEKHA---------GKALVRTMVDILYGGEH---RIANI-------------VMTLAAAMVQSA--GKRWPTFVYLVV 245 (405)
T ss_pred hHHHHhh---------hhhhhhhHHHHHhccch---hhhhh-------------hhhhhHHhhhhh--hhhhHHHHHHHH
Confidence 5432110 00000001110000000 00000 000000011111 111111111111
Q ss_pred HHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
..............+.|.++++ .+.+. .+.+.......++.+++.++.+++.||++||+.+..+.....+........
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 324 (405)
T TIGR00891 246 LVLFANLYSHPIQDLLPTYLKADLGLSP-HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI 324 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh
Confidence 1111111112344556666654 56655 778888889999999999999999999999998876655443322222111
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhh
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFL 409 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 409 (443)
..............+.......+....++.|.+|+++|++++|+.+...+++..++|.+.|.+.|+.| |...+.
T Consensus 325 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 325 -----GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred -----CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 11222222222222233333334445788899999999999999999999999999999999999988 654443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=270.56 Aligned_cols=351 Identities=14% Similarity=0.135 Sum_probs=252.3
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
...|.+++|+|.|.++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|++.|+
T Consensus 24 ~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~ 103 (382)
T PRK10091 24 GVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGF 103 (382)
T ss_pred hChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH-HhcCCCCh
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLPPSP 171 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~ 171 (443)
+.+...+....++.|++|+++|++++++...+..+|..+++++++++.+.. +||+.|++.++..++..+. .+.+||.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 104 PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999988988999999999999999999999999999999999999988777 9999999988877666543 34566643
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
+ + + + .+ .....+.++++..+.......+
T Consensus 183 ~---------~--------------------~--~----~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 210 (382)
T PRK10091 183 D---------E--------------------A--K----GG-----------------LREQFHFLRSPAPWLIFAATMF 210 (382)
T ss_pred c---------c--------------------c--c----cC-----------------HHHHHHHhcChHHHHHHHHHHH
Confidence 1 0 0 0 00 0001123455544443332222
Q ss_pred HHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
..... .....+.+.++++ .|.++ .+.+.......++.++++++.+++.||+++|+.+..+..+.+++.+++...
T Consensus 211 ~~~~~----~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~ 285 (382)
T PRK10091 211 GNAGV----FAWFSYIKPYMMFISGFSE-TSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF 285 (382)
T ss_pred HHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 21111 1223344545554 56655 788899999999999999999999999999998887776666655444322
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh-hccchhhh
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAENIFL 409 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~ 409 (443)
. +..+.......+...+......+.......+..|++.++.+ ..+....+|.+++|.+.|.+.|. .+|...+.
T Consensus 286 ~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~ 359 (382)
T PRK10091 286 G----GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVAL 359 (382)
T ss_pred H----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHH
Confidence 1 12222222222222222222222222333444444444443 34667889999999999999996 57888888
Q ss_pred HHHHHHHHHHHHhhhccc
Q 013431 410 LFAAIAFLAVLFIVRTVP 427 (443)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~ 427 (443)
..++++.+.........+
T Consensus 360 ~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 360 PAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 777666665554444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.49 Aligned_cols=342 Identities=18% Similarity=0.205 Sum_probs=252.7
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.|++.+++|.++++.|+..+.+.++..+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.
T Consensus 43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 122 (394)
T PRK10213 43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL 122 (394)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCChHH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRW 173 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~~~ 173 (443)
+...+...+++.|++|+|+|++++++...+.++|..++|++++.+.+.. +||+.|++.++++++..+.. ...||+|+.
T Consensus 123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~ 201 (394)
T PRK10213 123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIFWIIKSLPSLPGE 201 (394)
T ss_pred HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHHHHCCCCCcc
Confidence 9999999999999999999999999999999999999999999998887 99999999887776554433 335553310
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
++++..+.++.+++|.++...+...+..
T Consensus 202 ----------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 229 (394)
T PRK10213 202 ----------------------------------------------------PSHQKQNTFRLLQRPGVMAGMIAIFMSF 229 (394)
T ss_pred ----------------------------------------------------cccchhHHHHHhcCHHHHHHHHHHHHHH
Confidence 0000112345677777766554333333
Q ss_pred HHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (443)
..... ...+..|.+.++.|.+. ...+......+++.+++.++.+++.||.+ |+.+..+..+.......+....
T Consensus 230 ~~~~~---~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~-- 302 (394)
T PRK10213 230 AGQFA---FFTYIRPVYMNLAGFGV-DGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG-- 302 (394)
T ss_pred HHHHH---HHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--
Confidence 22211 12333477777777776 67888888899999999999999999954 4433333333222222222211
Q ss_pred hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHH
Q 013431 334 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA 413 (443)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 413 (443)
+..+.......+ .+.......+...+.+++..| +++++..+......++|..+||.+.|.+.|..|+...+...+.
T Consensus 303 --~~~~~~~~~~~l-~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~ 378 (394)
T PRK10213 303 --SDKIVATGVAII-WGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGT 378 (394)
T ss_pred --hhHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHH
Confidence 223333333333 333333334444456677777 5567777888888899999999999999999998777777665
Q ss_pred HHHHHHH
Q 013431 414 IAFLAVL 420 (443)
Q Consensus 414 ~~~~~~~ 420 (443)
+..+..+
T Consensus 379 ~~~~~~~ 385 (394)
T PRK10213 379 LMLLTAL 385 (394)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=279.53 Aligned_cols=370 Identities=15% Similarity=0.112 Sum_probs=279.1
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRL 88 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~ 88 (443)
..|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|+
T Consensus 39 ~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (417)
T PRK10489 39 AVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGL 118 (417)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 467888899999999999999999999999999999999999999999988887777665542 568899999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
+.|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +||+.|++.++..++..+..+.+|
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 197 (417)
T PRK10489 119 WDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAGTFITLLPLLRLP 197 (417)
T ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999888999999999999999999999999999999999999999988766 899999988877776666666677
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|+++. + ++ ++ . ..++....++..+++|.++...+.
T Consensus 198 ~~~~~-------------~--------------~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T PRK10489 198 ALPPP-------------P--------------QP--RE---H-------------PLRSLLAGFRFLLASPVVGGIALL 232 (417)
T ss_pred CCCCC-------------C--------------cc--cc---c-------------chHHHHHHHHHHHcChHHHHHHHH
Confidence 64320 0 00 00 0 000001124456677765554433
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
..+... . .....+.|.+.++ .+.+. ...++......++.+++.++.+++.||.++++.+..+..+.+++.+++
T Consensus 233 ~~~~~~-~----~~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 306 (417)
T PRK10489 233 GGLLTM-A----SAVRVLYPALADEVWQMGA-AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF 306 (417)
T ss_pred HHHHHH-H----HhHHHhhHHHHHhccCCCh-hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH
Confidence 322211 1 2345577888887 56654 778888889999999999999999999777777666666555555444
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchh
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 407 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 407 (443)
.. ..+........+..+.......+...++..|..|++.||+++|+.+...++|..++|.+.|.+.+..|+...
T Consensus 307 ~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~ 380 (417)
T PRK10489 307 GL------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVAS 380 (417)
T ss_pred Hc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhH
Confidence 32 112222222233333333333344457788999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCCCHHHHHhhh
Q 013431 408 FLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 441 (443)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (443)
+...+++.++..++.....++.|+++++|+|++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 381 ASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 8888887777777777777888888888887664
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=269.18 Aligned_cols=359 Identities=16% Similarity=0.153 Sum_probs=238.8
Q ss_pred hhhhh--cchhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHH--------H
Q 013431 18 LVAQL--GSTFRLFSLAL-----CGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------V 82 (443)
Q Consensus 18 i~~~~--~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~ 82 (443)
+.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++..+..+++++++++++++|++ .
T Consensus 49 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (438)
T PRK09952 49 FNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVL 127 (438)
T ss_pred HHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 44454 56665 35543 355677889999999999999999999999999999999999999987 5
Q ss_pred HHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccC--------CccchHHHHhhhh
Q 013431 83 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN--------AVGGWRYMYGLSA 154 (443)
Q Consensus 83 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~--------~~~~wr~~f~~~~ 154 (443)
++++|+++|++.|..++...+++.|++|+|+|++..+....+..+|..++..+...+.. .. +||++|++.+
T Consensus 128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~ 206 (438)
T PRK09952 128 LVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSW-GWRIPFLFSI 206 (438)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhcc-ChHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998877665432 34 9999999988
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchh
Q 013431 155 PLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 234 (443)
Q Consensus 155 ~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (443)
++.++........||+|+|...+++.+ +.+++....+
T Consensus 207 ~~~l~~~~l~~~~~es~~~~~~~~~~~-------------------------------------------~~~~~~~~~~ 243 (438)
T PRK09952 207 VLVLIALWVRNGMEESAEFEQQQHEQA-------------------------------------------AAKKRIPVIE 243 (438)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHhhcc-------------------------------------------cccccCCHHH
Confidence 877665555556788886532210000 0000000112
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEE
Q 013431 235 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 313 (443)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 313 (443)
.++++++.+........ ...........|.|.++++ .+.+. ..........++..+++.++.|+++||++||+.+
T Consensus 244 ~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~g~s~-~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~ 319 (438)
T PRK09952 244 ALLRHPGAFLKIIALRL---CELLTMYIVTAFALNYSTQNLGLPR-ELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY 319 (438)
T ss_pred HHHHchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 24455544433322111 1111223355677777654 45554 4444445556677788889999999999999887
Q ss_pred ehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHH-HHHHHHHHH
Q 013431 314 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVT 392 (443)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~ 392 (443)
..+..+..++...+..... ............+..+.......+..+++..|.+|++.|+++.|+.+.. ..+++.++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p 397 (438)
T PRK09952 320 ITGALIGTLSAFPFFMALE--AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTP 397 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHH
Confidence 7665544433322221111 1122222222222222222222334457889999999999999997665 458999999
Q ss_pred HhhHHHHHhhc--cchhhhHHHHHHHHHHHHhhhcccc
Q 013431 393 FAFSPLKELLG--AENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 393 ~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
.+.+.+.+..+ |...+...+++.+++.+..+ ..++
T Consensus 398 ~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 398 FIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence 99999988653 55566666666665555443 3444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=274.57 Aligned_cols=376 Identities=15% Similarity=0.074 Sum_probs=263.3
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
+.+.|++.+|+|.+.++.+|+.+.+.+++..+++++|+++||+|||+++..+..++.++++++++++|++.++++|+++|
T Consensus 26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G 105 (495)
T PRK14995 26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLA 105 (495)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCCC
Q 013431 92 LGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPP 169 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e 169 (443)
++.+...|.....+.+.+ |+++|++++++......+|..+||.+++++.++. +||+.|++...++++..+ ..+++||
T Consensus 106 ~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 106 IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-YWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999998888887776 6789999999999999999999999999999887 999999998877776654 4455677
Q ss_pred ChHHHHHhhhcCCCchhhHHHHHHHHH---hhhhcCCCCCCcchhhHHHH-------HHhccccccccccccchhhhccC
Q 013431 170 SPRWLLLRAVQGKGSLQEYKEQAISAL---GKLRRRPPGDKLSERQIEDT-------LVSLKSSYTDEKSEGSFLEVFQG 239 (443)
Q Consensus 170 s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
+++ ++.++.+..+......... ....+.....+......... ......+ .+.+++.--.+++|+
T Consensus 185 ~~~-----~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e-~~~~~p~~~~~lf~~ 258 (495)
T PRK14995 185 QAG-----RRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQ-LAASRPMIDMRLFTH 258 (495)
T ss_pred CCC-----CCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH-hcCCCCCcCHHHhCC
Confidence 542 1111112111111110000 00111111111110000000 0000000 011111122467888
Q ss_pred CchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH
Q 013431 240 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 319 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 319 (443)
|.+....+......... ....++.|.++++....++.+++.......++..++.++.|++.||+++|+.+..+..+
T Consensus 259 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~ 334 (495)
T PRK14995 259 RIILSGVVMAMTAMITL----VGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMAL 334 (495)
T ss_pred cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 87765554443333332 23566788888875444448999999999999999999999999999999887777666
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 013431 320 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 399 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 399 (443)
.+++...+.... .....+.......+.+.+.+....+ ......+..|+++++.+.++.++.+++|+.+|+.+.|.+.
T Consensus 335 ~~~~~~~l~~~~--~~~~~~~~~~~~~l~G~g~g~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 335 SALSFYGLAMTD--FSTQQWQAWGLMALLGFSAASALLA-STSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHHhHHHHHHH-HHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555443321 1122222232333333333333333 3356667789999999999999999999999999999887
Q ss_pred Hh
Q 013431 400 EL 401 (443)
Q Consensus 400 ~~ 401 (443)
+.
T Consensus 412 ~~ 413 (495)
T PRK14995 412 SR 413 (495)
T ss_pred HH
Confidence 64
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=244.60 Aligned_cols=398 Identities=19% Similarity=0.229 Sum_probs=298.7
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.|.+...+|.+..|..++......|..+++..||..+|++|||+...+..+...+...+.+.++|+..+.+.|.+.|+|.
T Consensus 101 ~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~ 180 (528)
T KOG0253|consen 101 LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGV 180 (528)
T ss_pred HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccC
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHHH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWL 174 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~ 174 (443)
|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+........ ||||.+.....+..+.+...+++||||||.
T Consensus 181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~ 257 (528)
T KOG0253|consen 181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVWVYESPRFY 257 (528)
T ss_pred CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhhcccCcchh
Confidence 98 899999999999999998877666 999999999999998888888 999998888888888888888999999998
Q ss_pred HHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcch-------hhHHHHHHhcccc--ccccccccchhhhccCCchhHH
Q 013431 175 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE-------RQIEDTLVSLKSS--YTDEKSEGSFLEVFQGPNLKAF 245 (443)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 245 (443)
.. +++++++.+.++++.+.|...-... ++.+++....++. ...++......+++. |+++..
T Consensus 258 ~~---------~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkt 327 (528)
T KOG0253|consen 258 LA---------KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKT 327 (528)
T ss_pred hh---------cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHH
Confidence 76 6788888888888877665543211 1111111111111 112223344455554 334433
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcC--------------------CCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAG--------------------FSAAADATRVSVVIGVFKLVMTWIAVAKVD 305 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 305 (443)
.+.....++.....++........+.+... .+. ..-..-..+.....+.|.++.+++.|
T Consensus 328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLIt~~ive 406 (528)
T KOG0253|consen 328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLITGVIVE 406 (528)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhHHHHHHH
Confidence 333333333332222233333333332211 111 22233445667889999999999999
Q ss_pred ccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHH
Q 013431 306 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 385 (443)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 385 (443)
|+|||+.+..++++.++..+++... ..........+....+....+. ..+.|..|++|+..|+++.|.......
T Consensus 407 rlGRKkTMal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaR 480 (528)
T KOG0253|consen 407 RLGRKKTMALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMAR 480 (528)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHh
Confidence 9999999998888877776665542 3344444455555666666665 566999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhccccCCCCCH
Q 013431 386 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 434 (443)
Q Consensus 386 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (443)
+|+++.|.+. +........+..+.+++++++.+..+++.-|+|+|..
T Consensus 481 IggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 481 IGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 9999999988 4444455677788888999999888888889988753
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=270.56 Aligned_cols=339 Identities=20% Similarity=0.266 Sum_probs=223.9
Q ss_pred CCcchhhhhhcchhhHHHHHH-HHH-----HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHH-----
Q 013431 13 CSRPSLVAQLGSTFRLFSLAL-CGS-----LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG----- 81 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~-s~~-----~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~----- 81 (443)
...|.+.+|++.++.+.+.+. +.. .++..+++++.|+++||+||||.++.+..++.+++++++++++++
T Consensus 36 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 115 (434)
T PRK15075 36 FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLA 115 (434)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 457899999999888765443 332 223347899999999999999999999999999999999999987
Q ss_pred ---HHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc--------CCccchHHHH
Q 013431 82 ---VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMY 150 (443)
Q Consensus 82 ---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~~wr~~f 150 (443)
.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..+++.+++.+. +.. |||++|
T Consensus 116 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~-gWr~~f 194 (434)
T PRK15075 116 APLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEW-GWRIPF 194 (434)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-chHHHH
Confidence 46889999999999999999999999999999999999999988888888777776642 344 999999
Q ss_pred hhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccc
Q 013431 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 230 (443)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (443)
++..+...+........||++++...+ ++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~e~~~~~~~~-----------------------------------------------~~~~~~ 227 (434)
T PRK15075 195 LIGCLIVPFIFLIRRSLEETEEFLARK-----------------------------------------------HRPSMR 227 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhh-----------------------------------------------hccccc
Confidence 875544322222222333432110000 000000
Q ss_pred cchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013431 231 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR 309 (443)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 309 (443)
..+++..+++..+.. .....+.....+.....|.|.++++ .|.+. .+.++......++.+++.++.|+++||++|
T Consensus 228 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~ 303 (434)
T PRK15075 228 EIFRSLAANWRIVLA---GMLMVAMTTVSFYLITVYTPTFGKTVLHLSA-ADSLLVTLCVGVSNFIWLPIGGALSDRIGR 303 (434)
T ss_pred cHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 112222222222211 1122222223344577789999887 57665 667778888889999999999999999999
Q ss_pred ceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHH-HHH
Q 013431 310 RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF-GSN 388 (443)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~ 388 (443)
|+....+..+..+.......... ............+..+.......+..+.+..|.+|++.|+++.|+.+.... +++
T Consensus 304 r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g 381 (434)
T PRK15075 304 RPVLIAFTVLAILTAYPALSWLV--AAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFG 381 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHh
Confidence 98776654433222111111111 111211111111111112222333334678899999999999999765544 458
Q ss_pred HHHHHhhHHHHHhhccc
Q 013431 389 AIVTFAFSPLKELLGAE 405 (443)
Q Consensus 389 ~~~~~~~g~l~~~~g~~ 405 (443)
.++|.+.|.+.|..|+.
T Consensus 382 ~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 382 GFTPAISTWLIHVTGDK 398 (434)
T ss_pred hhHHHHHHHHHHhcCCc
Confidence 88999999999998854
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=266.54 Aligned_cols=351 Identities=13% Similarity=0.135 Sum_probs=254.3
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
....|++++++|+|.++.+++.+.+.+++.++++++|++.||+|||+++..+..+.+++.+++++++|++.+++.|+++|
T Consensus 27 g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G 106 (394)
T PRK03699 27 GMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLG 106 (394)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.....+||+.|.+.+++.++..+..++ .+.|
T Consensus 107 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p 185 (394)
T PRK03699 107 VVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFP 185 (394)
T ss_pred HhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 999999999999999999999999999999999999999999998877654349999999888877666544433 2222
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
+. ++ ++ + ++ +++. .++. .++.++...+...+
T Consensus 186 ~~------------~~--------------~~--~---------------~~-~~~~----~~~~-~~~~~~~~~~~~~~ 216 (394)
T PRK03699 186 AL------------GK--------------HA--P---------------KA-DKPV----AKEK-WGIGVLFLAIAALL 216 (394)
T ss_pred cc------------cc--------------cC--c---------------cc-cCcc----cccc-CChHHHHHHHHHHH
Confidence 10 00 00 0 00 0000 0000 12233333322222
Q ss_pred HHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
... .+..+..|.|.++++ .+.+. .+.+.......++..+++++.+++.||+++|+.+.....+..+...++..
T Consensus 217 ~~~----~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~- 290 (394)
T PRK03699 217 YIL----AQLTFISWVPEYAQKKFGMSL-EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN- 290 (394)
T ss_pred HHH----HHHHHHHHHHHHHHHHcCCCh-HHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-
Confidence 222 223466789999865 46655 77888888889999999999999999999998876655544443333221
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
.++........ +..+.......+...+...|..| +.+++..+......++|..++|.+.|++.|..|++..++.
T Consensus 291 ----~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~ 364 (394)
T PRK03699 291 ----TDDPSHLLYAI-LGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLT 364 (394)
T ss_pred ----cCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhh
Confidence 12222222222 22333222233333345566655 4567788888889999999999999999999999888888
Q ss_pred HHHHHHHHHHHhhh
Q 013431 411 FAAIAFLAVLFIVR 424 (443)
Q Consensus 411 ~~~~~~~~~~~~~~ 424 (443)
.+++..++.+....
T Consensus 365 ~~~~~~~~~~~~~~ 378 (394)
T PRK03699 365 ANGLYAVVFVMCIL 378 (394)
T ss_pred hHHHHHHHHHHHHH
Confidence 88777776554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=274.74 Aligned_cols=366 Identities=15% Similarity=0.097 Sum_probs=255.4
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHhhhhhhhc
Q 013431 21 QLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAM 98 (443)
Q Consensus 21 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~ 98 (443)
|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 899999999999999999999999999999999999999999999999998887554 568899999999999999999
Q ss_pred hhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cCCCChHHHHHh
Q 013431 99 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLR 177 (443)
Q Consensus 99 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~es~~~~~~~ 177 (443)
|....++.|++|+++|++++++...+..+|..+++++++.+.+...+||+.|++.++++++..+.++ +.+|+|+..
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--- 226 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--- 226 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---
Confidence 9999999999999999999999999999999999999999877623899999999988877766554 455655310
Q ss_pred hhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHH
Q 013431 178 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257 (443)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (443)
++ .++.|+ +. .+ +..+++.++.+++.+++++++++.++...+........
T Consensus 227 ---~~---~~~~~~-~~-i~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 276 (465)
T TIGR00894 227 ---PC---ISKFEK-KY-IN--------------------SSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWL-- 276 (465)
T ss_pred ---CC---CCHHHH-HH-HH--------------------hhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHH--
Confidence 00 000000 00 00 00000001112234578888888877766544443333
Q ss_pred hCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehh---hHHHHHHH---HHHHHH
Q 013431 258 TGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG---VCGIALSL---LLLSAY 330 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~---~~~~~~~~---~~~~~~ 330 (443)
...+..|.|.++++. +.+. .+.++......++..++.++.|+++||.++|+..... .....++. ......
T Consensus 277 --~~~~~~~lp~~l~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (465)
T TIGR00894 277 --YTILPTYLPTFISWVLRVSG-KENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYA 353 (465)
T ss_pred --HHHHHHHHHHHHHHHhCcCh-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777889888764 5554 7888888899999999999999999998655432211 11111111 111111
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh---ccchh
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL---GAENI 407 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~ 407 (443)
...........+....+ .+.......+..+....|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...
T Consensus 354 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~ 431 (465)
T TIGR00894 354 LPYLSAAFYLTIIILTL-ANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIV 431 (465)
T ss_pred HHHcCCchHHHHHHHHH-HHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHH
Confidence 11001122222222222 222222222333345567766 58999999999999999999999999887753 26677
Q ss_pred hhHHHHHHHHHHHHhhh
Q 013431 408 FLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 408 ~~~~~~~~~~~~~~~~~ 424 (443)
|.+.++..+++.++...
T Consensus 432 f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 432 FLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHeee
Confidence 77777777776655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=268.53 Aligned_cols=342 Identities=22% Similarity=0.171 Sum_probs=246.6
Q ss_pred cch-hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc--------chHHHHHH
Q 013431 15 RPS-LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--------PGLGVLLV 85 (443)
Q Consensus 15 ~p~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--------~~~~~l~~ 85 (443)
.|. +++++|.|+.+.|++.+++.+++.+++++.|+++||+||||++..+.++.+++.+.+.++ .+++.+++
T Consensus 38 l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (399)
T PRK05122 38 LPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLL 117 (399)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHH
Confidence 444 678999999999999999999999999999999999999999999999988887766553 25778999
Q ss_pred HHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh
Q 013431 86 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 86 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 165 (443)
.|+++|++.+...+...+++.|++|+|+|++++++...+..+|..+|+.+++.+.+.. +||..+++.++..++..+...
T Consensus 118 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~ 196 (399)
T PRK05122 118 GRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-GLAGLGLLIMLLALLGLLLAR 196 (399)
T ss_pred HHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988877 999998877666554433333
Q ss_pred cCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHH
Q 013431 166 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 245 (443)
Q Consensus 166 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (443)
..|++++ + + +++.+.++.+++ .+..
T Consensus 197 ~~~~~~~------------------------------~--~---------------------~~~~~~~~~~~~--~~~~ 221 (399)
T PRK05122 197 PRPAVPP------------------------------V--K---------------------GERLPFRRVLGR--VWPY 221 (399)
T ss_pred cCCCCCC------------------------------C--C---------------------ccchhHHHHHHH--HHHH
Confidence 2232110 0 0 000011122221 1111
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 325 (443)
.....+..+. +.....+.+.+.++.+.. ..+.......++.+++.+..+++.||+++|+.+..+..+..++..
T Consensus 222 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 294 (399)
T PRK05122 222 GMGLALASIG----FGTIATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLL 294 (399)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 1111111111 123445667777766552 345566777888899999999999999999887777666666555
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Q 013431 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAE 405 (443)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 405 (443)
.+... ++.+.......+.+.+.+.. .+.......|..|+++|+++.|+.+....+|..++|.+.|.+.+..|++
T Consensus 295 ~~~~~-----~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 368 (399)
T PRK05122 295 LLWLA-----PSPWMALIGAALTGFGFSLV-FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYP 368 (399)
T ss_pred HHHHh-----ccHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 44431 22233333233333333322 2333345667889999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhc
Q 013431 406 NIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~ 425 (443)
..+...+++.+++.+.....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 369 SIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99888888777766655543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=262.25 Aligned_cols=340 Identities=18% Similarity=0.138 Sum_probs=243.1
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hc-----cchHHHHHHHHH
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AY-----APGLGVLLVGRL 88 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~-----~~~~~~l~~~r~ 88 (443)
.+++|+|.|.++.|++.+.+.+++.++++++|+++||+||||++..+.++..++.+.. +. .++++.+++.|+
T Consensus 41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (392)
T PRK12382 41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL 120 (392)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999988877665433 22 358899999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|++++.+.+.. +||..+.+..+..++........|
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 199 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALALTTMVLPLLAWAFNGTVR 199 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999988777 899877765554433332222222
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|+++ ++ +++.+.++.++ ..+...+.
T Consensus 200 ~~~~-----------------------------~~------------------------~~~~~~~~~~~--~~~~~~~~ 224 (392)
T PRK12382 200 KVPA-----------------------------HA------------------------GERPSLWSVVG--LIWKPGLG 224 (392)
T ss_pred CCCC-----------------------------Cc------------------------ccCchHHHHHH--HHHHhHHH
Confidence 2110 00 00001111111 01111111
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
..+... .......+.|.++++.+.+ ..+.......++.+++++..+++.||+++|+.+..+..+..++..++.
T Consensus 225 ~~l~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 297 (392)
T PRK12382 225 LALQGV----GFAVIGTFVSLYFASKGWA---MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW 297 (392)
T ss_pred HHHHHH----HHhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH
Confidence 111111 1123455667777776653 345556667778889999999999999999998887777666655543
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 408 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 408 (443)
.. ++.+.......+...+.+. ..+.......|..|+++|+++.|+.+....++..++|.+.|.+.|+.|++..+
T Consensus 298 ~~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~ 371 (392)
T PRK12382 298 LA-----PTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVF 371 (392)
T ss_pred Hc-----ccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 31 2222222223333322222 23333356678889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhc
Q 013431 409 LLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~~~ 425 (443)
...+++.+++.++.+..
T Consensus 372 ~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 372 LAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 98888777776655543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=271.45 Aligned_cols=364 Identities=18% Similarity=0.125 Sum_probs=256.2
Q ss_pred CCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013431 10 PSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 89 (443)
Q Consensus 10 ~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 89 (443)
..+...|.+.+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++++++++++.+++.|++
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHH-HhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY-FVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSL 167 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~ 167 (443)
.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+.. +||+.|++.+++.++..+ ..++.
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999999999 4666655555 999999988877766544 44556
Q ss_pred CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHH
Q 013431 168 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 247 (443)
Q Consensus 168 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
||+|+.... + +. + +.++ ++. +.+ +.+++.+.+..+...++++++|.++...+
T Consensus 172 ~~~~~~~~~-----~---~~--~----------~~~~-~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (379)
T TIGR00881 172 RDSPQSCGL-----P---PA--E----------EMPN-EEP-DGD------AEKKEEELTKKQIFLQYVLLNKVLWYISL 223 (379)
T ss_pred CCCcccccc-----C---cc--c----------cCcc-ccc-ccc------cccccccccchHHHHHHHHhcchHHHHHH
Confidence 666531000 0 00 0 0000 000 000 00000011112233566778887776665
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 326 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 326 (443)
...+..... .....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||..+++...............
T Consensus 224 ~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 298 (379)
T TIGR00881 224 GYVFVYVVR----TGILDWSPLYLTQEKGFSK-EKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS 298 (379)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 544444433 2356677877765 45554 78888889999999999999999999864443332222222221111
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccch
Q 013431 327 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAEN 406 (443)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 406 (443)
+....... ...........+..+.......+....+..|..|++.|+++.|+.+....+++.++|.+.|.+.|..||+.
T Consensus 299 ~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 299 LLVYWLNP-AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHhcCc-chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 11111100 11112222222222322223333334677899999999999999999999999999999999999999876
Q ss_pred hh
Q 013431 407 IF 408 (443)
Q Consensus 407 ~~ 408 (443)
.|
T Consensus 378 ~f 379 (379)
T TIGR00881 378 AF 379 (379)
T ss_pred cC
Confidence 53
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=258.57 Aligned_cols=340 Identities=15% Similarity=0.137 Sum_probs=249.3
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
+...|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++++|++.++++|+++|
T Consensus 26 ~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (381)
T PRK03633 26 NTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAG 105 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cCCCC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPS 170 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~es 170 (443)
++.+...+...+.+.+..++++|+++++++..+.++|..+||.+++.+.+.. .|+..+. .+..........+ ..+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (381)
T PRK03633 106 IGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-MSVLPWV-TGLVLAAILPLLFTRILNQ 183 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cchHHHH-HHHHHHHHHHHHHhcccCC
Confidence 9999999988888889999999999999999999999999999999977653 2333322 2222211111111 11110
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
++ ++++..+.++.+++|.++.......
T Consensus 184 ~~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (381)
T PRK03633 184 QA-----------------------------------------------------ENHDSTSIWPMLKLRQARLGVNGCI 210 (381)
T ss_pred CC-----------------------------------------------------CCCCCCCHHHHHHhcchHHHHHHHH
Confidence 00 0001123455677776664433222
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
...... .....+.|.+.++.+.+. ...+.......++.+++++..+++.||+++|+.+..+.....++...+..
T Consensus 211 ~~~~~~----~~~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~- 284 (381)
T PRK03633 211 ISGIVL----GSLYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS- 284 (381)
T ss_pred HHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh-
Confidence 222221 234557888888877765 67788888888999999999999999999998877766665554433321
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
. .. ......+ .+.......|...+...|..|+++++...+..+...++|..++|.+.|.+.|+.|+...|.+
T Consensus 285 -----~-~~-~~~~~~l-~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~ 356 (381)
T PRK03633 285 -----Q-AA-MAPALFI-LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIM 356 (381)
T ss_pred -----h-HH-HHHHHHH-HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 1 11 1111122 22222233455556777888888888888888888899999999999999999999888888
Q ss_pred HHHHHHHHHH
Q 013431 411 FAAIAFLAVL 420 (443)
Q Consensus 411 ~~~~~~~~~~ 420 (443)
.+.+.++..+
T Consensus 357 ~~~~~l~~~~ 366 (381)
T PRK03633 357 IASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHH
Confidence 7777765544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=268.98 Aligned_cols=382 Identities=16% Similarity=0.153 Sum_probs=259.8
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----PGLGVLLVGRLL 89 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l 89 (443)
..|.+++ +|.++++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++++. ++++.+.+.|++
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 127 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL 127 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 4577775 59999999999999999999999999999999999999999999999998887764 467788899999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHH-HHHhcCC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG-IGMWSLP 168 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~ 168 (443)
.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+.+...+...+||..|++.++++++.. +..+++|
T Consensus 128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999988876544433389999999888877754 4455678
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|+|+.... . + .++ .+++.+.+. . + +++.+.+.++...+.++|++.++...+.
T Consensus 208 ~~~~~~~~------~--~--~~~-------~~~~~~~~~---~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (438)
T TIGR00712 208 DTPQSCGL------P--P--IEE-------YRNDYPDDY---N--E------KAEQELTAKEIFMQYVLPNKLLWYIAIA 259 (438)
T ss_pred CCHHhcCC------C--C--chh-------ccccccccc---c--c------ccccccchHHHHHHHHccCchHHHHHHH
Confidence 87642100 0 0 000 000000000 0 0 0000000000111246788877776554
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
..+..... .....|.|.++++. |.+. .+.++......+..+++.++.|++.||+++++....+...........
T Consensus 260 ~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 334 (438)
T TIGR00712 260 NVFVYLLR----YGVLDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAV 334 (438)
T ss_pred HHHHHHHH----HHHHHhHHHHHHHccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHH
Confidence 44433332 24667889998875 5554 778888888889999999999999999965443333332222221111
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHH-HHHHHhhHHHHHhhccch
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKELLGAEN 406 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~ 406 (443)
......+..+.+... ...+..+....+..........|.+|++.|++++|+.+...+.++ .++|.+.|.+.|..|+..
T Consensus 335 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~ 413 (438)
T TIGR00712 335 IVYWMNPAGNPLVDM-ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 413 (438)
T ss_pred HHHHhcCCCchHHHH-HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchH
Confidence 111111111122111 111222211111111112346788999999999999998888775 689999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhccccCC
Q 013431 407 IFLLFAAIAFLAVLFIVRTVPETK 430 (443)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~ 430 (443)
.+.+..++.+++.+......+|+|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 414 GFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 988888887777777666666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=270.57 Aligned_cols=386 Identities=15% Similarity=0.183 Sum_probs=258.5
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
..|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++
T Consensus 42 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 121 (496)
T PRK03893 42 VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMG 121 (496)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 173 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~ 173 (443)
.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.. +||+.|++.++..++..+....+||++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~p~~~~~ 200 (496)
T PRK03893 122 MAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-GWRALFFIGILPIIFALWLRKNLPEAEDW 200 (496)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 99999999999999999999999999999999999999999999988877 99999987655555444445567887654
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHH-Hhccccccccccccch---------------hhhc
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL-VSLKSSYTDEKSEGSF---------------LEVF 237 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~ 237 (443)
...++++.+ .+ +..+.....+.. .......... .......... ....+ ....
T Consensus 201 ~~~~~~~~~------~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
T PRK03893 201 KEKHAGKAP------VR---TMVDILYRGEHR--IINILLTLAAAAALWFCFAGN-LQNAAIVAVLGLLCAAIFISFMVQ 268 (496)
T ss_pred hhhcccccc------ch---hHHHHHhcchhH--HHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHHH
Confidence 221110000 00 000000000000 0000000000 0000000000 00000 0000
Q ss_pred cCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehh
Q 013431 238 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG 316 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 316 (443)
.++..+..........+...........+.|.+++ +.|.+. .+.+.......++.+++.++.|++.||++||+.+..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~-~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~ 347 (496)
T PRK03893 269 SSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP-HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCS 347 (496)
T ss_pred hcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 00111111111112222222222235567888885 566665 7888999999999999999999999999999887766
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhH
Q 013431 317 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 396 (443)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 396 (443)
..+..+..+.+... ...............++...+..+....++.|.+|+++|++++|+.+....+|+.++|.+.|
T Consensus 348 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 348 LLISQLLIIPVFAI----GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred HHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHH
Confidence 55444433322211 11222222222222222333333444467889999999999999999999999999999999
Q ss_pred HHHHhhccchhhhHHHHHHHH
Q 013431 397 PLKELLGAENIFLLFAAIAFL 417 (443)
Q Consensus 397 ~l~~~~g~~~~~~~~~~~~~~ 417 (443)
.+.|..|+...+...+..+.+
T Consensus 424 ~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 424 LIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHhccCChHHHHHHHHHHHHH
Confidence 999999988777555544433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=258.04 Aligned_cols=354 Identities=15% Similarity=0.102 Sum_probs=254.2
Q ss_pred cchhhh-hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHH
Q 013431 15 RPSLVA-QLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----PGLGVLLVGRL 88 (443)
Q Consensus 15 ~p~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~ 88 (443)
.+.+.+ |+|+|++|.+++.+++.++++++.++.|++.||+|.|+++.++.+++++.+++.+++ +|++.+++.|+
T Consensus 57 ~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~ 136 (462)
T PRK15034 57 TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIAL 136 (462)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHH
Confidence 455555 899999999999999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc-----CC------------ccchHHHHh
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-----NA------------VGGWRYMYG 151 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-----~~------------~~~wr~~f~ 151 (443)
+.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+. .. ..+||.+.+
T Consensus 137 l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~ 215 (462)
T PRK15034 137 LCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAW 215 (462)
T ss_pred HHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHH
Confidence 99998 7789999999999999999999999997777777766655544322 10 115888888
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhcccccccccccc
Q 013431 152 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG 231 (443)
Q Consensus 152 ~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (443)
+..++.++..+..++..|+++ +++.+.+
T Consensus 216 ~~~~~~iv~~i~~~~~~~~~~----------------------------------------------------~~~~~~~ 243 (462)
T PRK15034 216 IWVPLLAIATIAAWSGMNDIA----------------------------------------------------SSRASIA 243 (462)
T ss_pred HHHHHHHHHHHHHHHhCCCcc----------------------------------------------------ccccCHH
Confidence 888877776655554322210 0111223
Q ss_pred chhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCce
Q 013431 232 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 311 (443)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 311 (443)
+..+.+|+|+.|.+.+...+.+ +++..+.++.|.+.++. ++. ........+..+...+.++++|+++||+|+++
T Consensus 244 ~~~~vlk~~~~Wllslly~~tF----G~fvg~s~~lp~~~~~~-~~~-~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~ 317 (462)
T PRK15034 244 DQLPVLQRLHLWLLSLLYLATF----GSFIGFSAGFAMLAKTQ-FPD-VNILRLAFFGPFIGAIARSVGGAISDKFGGVR 317 (462)
T ss_pred HHHHHhCCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHH-cCh-HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence 4667899999888775554433 33445777888888763 322 23333344556788889999999999999999
Q ss_pred EEehhhHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHhhccccceeeeeecccCc--------------------
Q 013431 312 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA-LLLYVGCYQISFGPISWLMVSEIFPL-------------------- 370 (443)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~-------------------- 370 (443)
++.++.....++...+..........+...... .+....+.+.+.. ..+.++.+.+|+
T Consensus 318 vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
T PRK15034 318 VTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREA 396 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence 998888766665544333221111112222222 2222233333333 333566677764
Q ss_pred -cccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhhHHHHHHHHHHHHhhhcccc
Q 013431 371 -RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 371 -~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
++.|.+.|+....+.+|+++.|.++|...+..| +...++.+.+..+++..+.+....+
T Consensus 397 ~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 397 VTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 156788899999999999999999999998877 6667777788877777776665433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=262.26 Aligned_cols=344 Identities=18% Similarity=0.136 Sum_probs=251.7
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
...|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+||||++..+..+.+++.+++.++++++.+++.|+++|+
T Consensus 34 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 113 (406)
T PRK15402 34 PGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGI 113 (406)
T ss_pred cchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCCh
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSP 171 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~ 171 (443)
+.+...+...+.+.|++|+++|.+..++......+|..++|.+++.+.+.. +||+.|++.++..++..+.. +..||++
T Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 114 GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL-PWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999888999999999999999999999999888999999999999887776 99999999888877665543 4466643
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
+.. + ++.+ .++...++++++++|.++...+...+
T Consensus 193 ~~~------------~------------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (406)
T PRK15402 193 GRV------------G------------------EKLS----------------LKELGRDYKLVLKNRRFVAGALALGL 226 (406)
T ss_pred ccc------------c------------------cccc----------------HHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 200 0 0000 00011234567888877765554443
Q ss_pred HHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
...... ....+.|.++++ .+.++ .+.+.......++.+++.++.+++.||+++|+.+..+.....++...+...
T Consensus 227 ~~~~~~----~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 301 (406)
T PRK15402 227 VSLPLL----AWIALSPVILISGEQLSS-YEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALA 301 (406)
T ss_pred HHHHHH----HHHHHhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 234456666544 56654 667777777778889999999999999999998877776666665555443
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
................+...+.+.... ......... +++++|++.+..+..+.++..+++.+.+.+.+..+.......
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 379 (406)
T PRK15402 302 TVISSHAYLWLTAGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLF 379 (406)
T ss_pred HHcccccHHHHHHHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Confidence 211111222222222333333322222 222223233 448899999999999999999999999999888775443333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=257.20 Aligned_cols=354 Identities=17% Similarity=0.156 Sum_probs=247.2
Q ss_pred CCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013431 11 SHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 11 ~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 90 (443)
.+.++|.+.+++|.+.++.++..+++.++++++++++|+++||+|||+++..+..+++++++++++++|++.++++|+++
T Consensus 35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~ 114 (413)
T PRK15403 35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ 114 (413)
T ss_pred hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH-HhcCCC
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLPP 169 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 169 (443)
|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+.+.. +||+.|++.++..++..+. .+.+||
T Consensus 115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998777778888999999999999999999999999999999999888766 9999999998887776654 445777
Q ss_pred ChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHH
Q 013431 170 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 249 (443)
Q Consensus 170 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (443)
+++. + +++. +.++..+++++++|||.++...+..
T Consensus 194 ~~~~--------~----------------------~~~~----------------~~~~~~~~~~~ll~~~~~~~~~l~~ 227 (413)
T PRK15403 194 TVKR--------G----------------------AVPF----------------SAKSVLRDFRNVFRNRLFLTGAATL 227 (413)
T ss_pred Cccc--------c----------------------CCCC----------------ChHHHHHHHHHHHcCHHHHHHHHHH
Confidence 5420 0 0000 0000112456788888888766554
Q ss_pred HHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHH
Q 013431 250 GLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 329 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 329 (443)
.+..... ..+..+.|.++++....++.+.++.......+.++++.+.+++.+|..+++.......+..++..++..
T Consensus 228 ~~~~~~~----~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~ 303 (413)
T PRK15403 228 SLSYIPM----MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIV 303 (413)
T ss_pred HHHHHHH----HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4444333 235566788887764334477888887788888888888888765544444332222222222222221
Q ss_pred HHHHhccchhHHHHHHHHHHHHHhhccccce-eeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 013431 330 YYKILGGFPLVAVSALLLYVGCYQISFGPIS-WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 408 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 408 (443)
......+..........+...+.+....... .++.. ....+|++.++.+.....+...++...+++.+. +....+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~---~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~ 379 (413)
T PRK15403 304 GNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS---NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPF 379 (413)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHH
Confidence 1100111111122233333333333222221 12222 223479999999999999999999999988776 555666
Q ss_pred hHHHHHHHHHH
Q 013431 409 LLFAAIAFLAV 419 (443)
Q Consensus 409 ~~~~~~~~~~~ 419 (443)
...++++.+..
T Consensus 380 ~~~~~~~~~~~ 390 (413)
T PRK15403 380 HLLAVVAGVIV 390 (413)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=262.21 Aligned_cols=338 Identities=15% Similarity=0.118 Sum_probs=256.4
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc-----hHHHHHHHH
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-----GLGVLLVGR 87 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-----~~~~l~~~r 87 (443)
...|.+.++++.++.+.+++.+.+.++..++++++|+++||+||||++..+..+.+++.++..+.+ |++.+++.|
T Consensus 20 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
T TIGR00900 20 VALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLA 99 (365)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 346788899999999999999999999999999999999999999999999999999988888877 999999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+.. +||+.|++.++..++..+..+.+
T Consensus 100 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 100 GILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988777 99999998877766655444433
Q ss_pred --CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHH
Q 013431 168 --PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 245 (443)
Q Consensus 168 --~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (443)
||+++ ++ +++.+++. .++....+++++++|.++..
T Consensus 179 ~~~~~~~-------------~~-----------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 215 (365)
T TIGR00900 179 RIPELAA-------------SE-----------------IQALSNAV-------------LRDTREGIKFVLKNPLLRTL 215 (365)
T ss_pred ccccCCC-------------cc-----------------ccccchhH-------------HHHHHhHHHHHHcCcHHHHH
Confidence 22110 00 00000000 00011235567778877766
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 324 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 324 (443)
.+...+....... ....+.|.+.++ .+.+. .+.+.......++.+++.++.+++.||.+||+.+..+..+.+++.
T Consensus 216 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 291 (365)
T TIGR00900 216 LLLALLFNLVFAP---AIVALFPYVQSKYLGRGS-THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAI 291 (365)
T ss_pred HHHHHHHHHHHHH---HHHHHhHHHHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 6544444433322 223567777776 45555 778888899999999999999999999999988776655555555
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
..+... +.+........+..+.......+...++..|..|+++|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus 292 ~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 292 LVVGLT-----PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHhh-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444432 11122222333333333333445556788899999999999999999999999999999999998754
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=266.02 Aligned_cols=396 Identities=21% Similarity=0.256 Sum_probs=292.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhch
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 99 (443)
+.+..+.....+..+++++|.++|++++|+++||+|||++++.++++..++.+++++++|++.+++.|++.|++.+....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 56677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhh
Q 013431 100 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 179 (443)
Q Consensus 100 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~ 179 (443)
....++.|++++++|+.+..+ ......+..+++.+++++.. +||+.+++..++.++.++..++.||+|||+..
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~--- 263 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLS--- 263 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHH---
Confidence 999999999999999999999 77777777788888777665 89999999999999888777777899999987
Q ss_pred cCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhC
Q 013431 180 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITG 259 (443)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (443)
+++.+++.+.+++..+.++.....+...+......+......+++..+.++++.|+.+...+...+.++....
T Consensus 264 ------~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~- 336 (521)
T KOG0255|consen 264 ------KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSL- 336 (521)
T ss_pred ------cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhH-
Confidence 5666778887777766553332222222222111111112223335588899988766655555555543322
Q ss_pred chhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccch-
Q 013431 260 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP- 338 (443)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 338 (443)
.++.-. +...+.+ .+........+..........+...|+.|||.....+..+..++.+...+... ...
T Consensus 337 ----~y~gl~-~~~~~lg--~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 406 (521)
T KOG0255|consen 337 ----VYYGLS-LNVSGLG--GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD---DLGG 406 (521)
T ss_pred ----HHHhhh-hhhhhcC--chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cchh
Confidence 222111 1112222 24455556666688888888899999999999999988888888887776542 112
Q ss_pred hHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHH
Q 013431 339 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA 418 (443)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 418 (443)
+.......+..++...++... +.+..|++|+..|..+.+.......++++++|.+...... ......+..++....+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~ 484 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLL 484 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHH
Confidence 234444455555555555544 6889999999999999999999999999999987754443 33333333356666666
Q ss_pred HHHhhhccccCCCCCHHHHHhhh
Q 013431 419 VLFIVRTVPETKGLSLEEIESKI 441 (443)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~ 441 (443)
..+...+.||++++.+.+..++.
T Consensus 485 ~~~~~~~lpet~~~~l~~t~~~~ 507 (521)
T KOG0255|consen 485 GLLSLLLLPETKGKPLPGTLLDA 507 (521)
T ss_pred HHHHHhcCcccCCCCCchhHHHH
Confidence 66676888999888765544443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=264.23 Aligned_cols=376 Identities=20% Similarity=0.209 Sum_probs=262.0
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
...|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++.++++++++++.+++.|+++|+
T Consensus 31 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 110 (471)
T PRK10504 31 TALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGV 110 (471)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cCCCCh
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSP 171 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~es~ 171 (443)
+.+...|...+++.|++|+++|+++.++.....++|..++|.+++.+.+.. +||+.|++..+...+..+... ..|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 111 GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999988877 999999998877766655443 344432
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHh--h-hhcCCCCCCcchhhHHHH--------HHhccccccccccccchhhhccCC
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALG--K-LRRRPPGDKLSERQIEDT--------LVSLKSSYTDEKSEGSFLEVFQGP 240 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
. +..+.+..+.......... . ..+.+.... ........ .....++...+++..+ .+++|||
T Consensus 190 ~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 261 (471)
T PRK10504 190 M------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGL-SPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTR 261 (471)
T ss_pred c------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCc-chHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhccc
Confidence 1 0011111111000000000 0 011111011 10000000 0000000011111122 3478888
Q ss_pred chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH
Q 013431 241 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 319 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 319 (443)
.++......++..+.. .....+.|++++. .|.+. ...++......++.+++.++.+++.||+++|+.+..+..+
T Consensus 262 ~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~ 336 (471)
T PRK10504 262 TFSLGLAGSFAGRIGS----GMLPFMTPVFLQIGLGFSP-FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLG 336 (471)
T ss_pred chHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 8877665554444432 3356677888876 55554 7888888888888888999999999999999998877776
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 013431 320 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 399 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 399 (443)
.++...++..... ....+.......+.+.+.+.... ....+..+..|++.+++++|+.++...+|..+++.+.|.+.
T Consensus 337 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 337 LALVSLLFMLVAL--LGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555443211 11111111122222222222333 33366778889999999999999999999999999999998
Q ss_pred Hhhccc
Q 013431 400 ELLGAE 405 (443)
Q Consensus 400 ~~~g~~ 405 (443)
+..|+.
T Consensus 414 ~~~g~~ 419 (471)
T PRK10504 414 GLFGQQ 419 (471)
T ss_pred HHhhhh
Confidence 887753
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=256.53 Aligned_cols=343 Identities=17% Similarity=0.123 Sum_probs=246.6
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHHHHhccchHHHHHHHHHHHhhhhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELII-AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 95 (443)
.+++++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++. +..+..++.+++++++|++.+++.|++.|.+.+
T Consensus 23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (375)
T TIGR00899 23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAS 102 (375)
T ss_pred HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Confidence 3678999999999999999999999999999999999999887654 666667778888999999999999999998888
Q ss_pred hhchhhhhHhhhcCcccchhhH--HHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCChH
Q 013431 96 LAMHGAPLYIAETCPSQIRGTL--ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPR 172 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~~ 172 (443)
...|...+++.|+.|+++|++. .+....+.++|..++|++++.+.+.. +||+.|++.++..++..+.. +++||+|+
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 8889888999999887777654 68888889999999999999988877 99999999988877665544 45777653
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHH
Q 013431 173 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 252 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (443)
... ++++..+.++.+++++++.......+.
T Consensus 182 ~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (375)
T TIGR00899 182 GAP--------------------------------------------------GALTRLEVRGLLASRDTRLLFVACTLM 211 (375)
T ss_pred Ccc--------------------------------------------------cccCcchhhhhhcCcchHHHHHHHHHH
Confidence 100 000001122345566666554433333
Q ss_pred HHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHH
Q 013431 253 LFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 331 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
.... .....+.|.++++ .+.++ .+.+..........+++.++.+++.||++||+.+..+.....+....+...
T Consensus 212 ~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~- 285 (375)
T TIGR00899 212 WGCN----ILYIINMPLLIIHELGLPD-KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD- 285 (375)
T ss_pred HHHH----HHHHhhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-
Confidence 3322 1234455666644 56655 667777777777788888999999999999998766555443333322221
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHH
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 411 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (443)
++.+.......+...+.+. ..+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..|++..+...
T Consensus 286 ----~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~ 359 (375)
T TIGR00899 286 ----NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFA 359 (375)
T ss_pred ----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 1222222222222222222 233444677788775 5679999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHh
Q 013431 412 AAIAFLAVLFI 422 (443)
Q Consensus 412 ~~~~~~~~~~~ 422 (443)
+++.+++.+..
T Consensus 360 ~~~~~~~~~~~ 370 (375)
T TIGR00899 360 IVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHH
Confidence 87777666644
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=268.88 Aligned_cols=371 Identities=13% Similarity=0.113 Sum_probs=256.6
Q ss_pred CCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHH-HHHH
Q 013431 11 SHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLV-GRLL 89 (443)
Q Consensus 11 ~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l 89 (443)
.....|++.+++|.|.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++++++++.+++ .|++
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 117 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI 117 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344578999999999999999999999999999999999999999999999999999999999999999998875 5799
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC-C
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-P 168 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~ 168 (443)
.|++.+...+...+++.++++ ++|+++.++...+..+|..++|++++.+.+.. |||+.|++.+++.++..+..+++ +
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999998877778888899996 78999999999999999999999999988877 99999999998877665544433 2
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
+.+... .++.++ .+..+.+...++. . .+...++..+....+++++|+++.....
T Consensus 196 ~~~~~~-----------~~~~~~--------~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (455)
T TIGR00892 196 VGPSQR-----------VSKSKS--------KEGLPPDGSTKKL-S------KKSTAEKINRFLDFSLFTHRGFLVYLSG 249 (455)
T ss_pred CCcccc-----------cccccc--------cccCCCCCccccc-c------ccchhhhhhhhcchHHhcCchHHHHHHH
Confidence 221100 000000 0000000000000 0 0000000001111246778877765544
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCceEEehhhHHH--HHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCGI--ALSL 324 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~--~~~~ 324 (443)
..+..+. ......+.|.+.++.+.+. .+.+......+++.++++++.+++.||. ++|+......... .++.
T Consensus 250 ~~l~~~~----~~~~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ 324 (455)
T TIGR00892 250 NVIMFLG----FFAPIIFLVPYAKDKGVDE-YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTH 324 (455)
T ss_pred HHHHHHH----ccchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence 3333332 2335567788888877765 7888899999999999999999999973 3333333222222 2222
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG- 403 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g- 403 (443)
++... .++.+.... ..+..+.......+...+...|.+|+++++++.|+.+...++|..++|.+.|.+.|..|
T Consensus 325 ll~~~-----~~~~~~~~i-~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~ 398 (455)
T TIGR00892 325 LLCAL-----AGDYTGLVI-YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN 398 (455)
T ss_pred HHHHH-----hchHHHHHH-HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCC
Confidence 22111 122232222 33333333333344455778889999999999999999999999999999999999875
Q ss_pred cchhhhHHHHHHHHHHH
Q 013431 404 AENIFLLFAAIAFLAVL 420 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~ 420 (443)
|...|.+.+++.+++.+
T Consensus 399 ~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 399 YKYIFYASGSIVVSAGL 415 (455)
T ss_pred cchHHHHhhHHHHHHHH
Confidence 77888777776655544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=256.50 Aligned_cols=338 Identities=17% Similarity=0.208 Sum_probs=241.0
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
...|.+.+++|.+.++.++..+.+.++..+++++.|+++||+|||+.+..+..+.+++.+++..++|++.+++.|+++|+
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~ 103 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH-HhcCCCCh
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLPPSP 171 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~ 171 (443)
+.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+.. +||+.|++.++..++..+. .+.+||++
T Consensus 104 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 104 GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999998877766 9999999988877766554 44566643
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
+. + ++ ++.+..+..++.++++.++...+...+
T Consensus 183 ~~--------~--------------------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (392)
T PRK10473 183 PA--------R--------------------AP--------------------AASSKPRENSESLLNRFFLSRLVITTL 214 (392)
T ss_pred Cc--------c--------------------cC--------------------CccchHHHHHHHHhCHHHHHHHHHHHH
Confidence 10 0 00 000001122345666655544433222
Q ss_pred HHHHHHhCchhhHhhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
...... .+..+.|.+.+ +.|.++ .+.+......+++.+++.++.+++.||++||+.+..+..+..++...+...
T Consensus 215 ~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 215 SVTVIL----TFVNTSPVLLMEQMGFSR-GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHH----HHHHhCHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 23344555554 456655 677888888899999999999999999999998877776666665555442
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
.. .........+...+.+..... ....+..|.++|+ |.......++..+++.+.+.+.+..|+......
T Consensus 290 ~~-----~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~ 358 (392)
T PRK10473 290 PS-----HAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNML 358 (392)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 21 112222222222222222221 2233444544443 444455567778888888888888887654444
Q ss_pred HHHHH
Q 013431 411 FAAIA 415 (443)
Q Consensus 411 ~~~~~ 415 (443)
.+.+.
T Consensus 359 ~~~~~ 363 (392)
T PRK10473 359 IGILI 363 (392)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=255.16 Aligned_cols=357 Identities=15% Similarity=0.136 Sum_probs=249.6
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh---c-cchHHHHHHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---Y-APGLGVLLVGRLLY 90 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~ 90 (443)
.|++.+|+|.|+++.|++.+.+.+++.++++++|+++||+||||++..+..+.+++++++. + .++++.+++.|++.
T Consensus 36 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 115 (402)
T TIGR00897 36 LSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR 115 (402)
T ss_pred HHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 4667789999999999999999999999999999999999999999999999998877653 3 35888999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHH-HHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCC
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI-LLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLP 168 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~ 168 (443)
|++.+...+...+.+.+++|+++|++++|+.+.+.++|. .++|++++++.+.. ||+..++......++..+.. ++.+
T Consensus 116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 116 GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSNK 194 (402)
T ss_pred HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhccC
Confidence 999988888888889999999999999999999999997 68999998888776 76665554443333332222 3333
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|.++ ++.+ ++ +. +.++..+.+++++++|+++...+.
T Consensus 195 ~~~~--------------~~~~---------------~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
T TIGR00897 195 DIFT--------------PQHM---------------QT--RE-------------KFSELGKAATILFTNPNVLLGGMV 230 (402)
T ss_pred CCCC--------------cccc---------------cC--Cc-------------chhhHHHHHHHHHcChhHHHHHHH
Confidence 3210 0000 00 00 000001134567888877765544
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEeh-hhHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG-GVCGIALSLLLL 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~ 327 (443)
..+... .......+.|.+.++.|.+. .+.+.......++..++++..|+++||++||+.... +.....++...+
T Consensus 231 ~~~~~~----~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l 305 (402)
T TIGR00897 231 RIINTI----GLFGFAVFLPMFVAELGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLAL 305 (402)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 333332 22346678899998888776 667777788889999999999999999998886532 222222222222
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchh
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 407 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 407 (443)
........+..+.......+.+ .......+.. ....|..| ++|+++.|+.+....++..++|.+.|.+.|..|+...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~ 382 (402)
T TIGR00897 306 YYIPQHFGHSFAVALIIAIALG-IFLAGYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGV 382 (402)
T ss_pred HHHHHccCCcHHHHHHHHHHHH-HHHHHHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 2111100112222222222222 2222233333 44566644 6899999999999999999999999999999999899
Q ss_pred hhHHHHHHHHHHHHhhh
Q 013431 408 FLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 408 ~~~~~~~~~~~~~~~~~ 424 (443)
+++.+++.+++.++..+
T Consensus 383 ~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 383 VWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888887777665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=267.72 Aligned_cols=377 Identities=18% Similarity=0.216 Sum_probs=265.6
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
+...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.+++++++|++.++++|+++|
T Consensus 22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 101 (485)
T TIGR00711 22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG 101 (485)
T ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPS 170 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 170 (443)
++.+...+...+++.|++|+++|++++++...+..+|..++|.+++++.++. +||+.|++.++++++..+.. +++||+
T Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-CceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999988877 99999999888877665543 455654
Q ss_pred hHHHHHhhhcCCCchhhHHHHH--HHHHh-hhhcCCCCCCcchhhHHHHH--------HhccccccccccccchhhhccC
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQA--ISALG-KLRRRPPGDKLSERQIEDTL--------VSLKSSYTDEKSEGSFLEVFQG 239 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
++ +..++.+..+..-.. ..... ...+.++.++.++....... .....+ .+++++..-.+++++
T Consensus 181 ~~-----~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 254 (485)
T TIGR00711 181 KP-----AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE-LTDDNPLVDLRLFKY 254 (485)
T ss_pred cc-----cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HcCCCCccCHHHHcC
Confidence 32 011111111110000 00000 11111122222111111000 000000 011111122457788
Q ss_pred CchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhH
Q 013431 240 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 318 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 318 (443)
|+++...+...+..+... ...++.|.++++. +.+. .+.+.......++.+++.++.|++.||++||+.+..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~ 329 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLY----GSFYLLPLYLQQVLGYTA-LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI 329 (485)
T ss_pred CChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 887766655444444332 3566788888774 5554 888999999999999999999999999999998877776
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 319 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
+.+++...+..... .............+.+.+.+....+.. ....+..|+++++++.|+.+..+.+|+.+++.+.+.+
T Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 330 LYAVGFYWRAFTFT-PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555442111 111122222222333333333333333 4455777999999999999999999999999999999
Q ss_pred HHhh
Q 013431 399 KELL 402 (443)
Q Consensus 399 ~~~~ 402 (443)
.++.
T Consensus 408 ~~~~ 411 (485)
T TIGR00711 408 LTNR 411 (485)
T ss_pred HHHH
Confidence 8753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=259.18 Aligned_cols=359 Identities=21% Similarity=0.238 Sum_probs=250.5
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
...|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+.+++.++..++++++.+++.|++.|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 117 (398)
T TIGR00895 38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGL 117 (398)
T ss_pred hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHH-HHHHhcCCCCh
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM-GIGMWSLPPSP 171 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~es~ 171 (443)
+.+...+...+++.|++|+++|++++++...+..+|..+++.+++++.+.. +||+.|++.++..++. .+..+++||++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 118 GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999988877 9999999987555554 44556788887
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
++...++ .++..+..+........+...+. .++..+++..+...+.+++++..+...... +
T Consensus 197 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 257 (398)
T TIGR00895 197 DFLVSKR----------PETVRRIVNAIAPQMQAEAQSAL--------PEQKATQGTKRSVFKALFQGKTARITVLLW-L 257 (398)
T ss_pred hHHHhcC----------HHHHHHHHHHHHHhccccccccc--------cccccccchhhHHHHHHhcchhHHHHHHHH-H
Confidence 6543321 11111111111111000000000 000000011111122233333322222211 2
Q ss_pred HHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 331 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
..+.....+.....+.|.+.++.+.+. .+.+.......++.+++.++.+++.||+++|+.. ....+..+....+....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 335 (398)
T TIGR00895 258 LYFMLLVGVYFLTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGSTL 335 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHh
Confidence 222222333446667887777777776 7788888999999999999999999999998333 33333333222222211
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
.+........++...+. ....+...++..|.+|+++|+++.|+.+....++..++|.+.|.+
T Consensus 336 ----~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 ----FSPTLLLLLGAIAGFFV-NGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ----hCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 22233333333333333 333445568899999999999999999999999999999998865
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=255.83 Aligned_cols=333 Identities=19% Similarity=0.197 Sum_probs=246.5
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
..|++++++|.++++.+++.+++.+++.++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 107 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG 107 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 173 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~ 173 (443)
.+...+...+++.|++|++++++..+.......+|..++|.+++++.+.. +||+.|++.++..++..+..++++|+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (401)
T PRK11043 108 VCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITLLLILPTLRLKPSKKA 186 (401)
T ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 88888888899999999999999999999999999999999999988877 99999999888887776655555554310
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
+ ++++++.++++++++|.++...+......
T Consensus 187 -------------~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (401)
T PRK11043 187 -------------R-------------------------------------KQSQDALTFKQLLKSKTYLGNVLIFAACS 216 (401)
T ss_pred -------------c-------------------------------------ccchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 0 00001123556677776665443332222
Q ss_pred HHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (443)
... ..+..+.|.+.++.+.+. .+.++......++.+++++..+++.||+++|+.........+++...+......
T Consensus 217 ~~~----~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (401)
T PRK11043 217 AAF----FAWLTGSPFILEQMGYSP-ADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL 291 (401)
T ss_pred HHH----HHHHHHhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 234556788888877765 677887777788889999999999999999887655544444443332222111
Q ss_pred hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 013431 334 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 404 (443)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 404 (443)
..+..........+...+.+ ...+.......|..| ++++++.|+.+..+..++..++.+.|.+.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 292 SHPSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL 360 (401)
T ss_pred ccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence 11222222222222222222 333344345556656 6799999999999999999999999988875433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=255.49 Aligned_cols=335 Identities=17% Similarity=0.211 Sum_probs=248.3
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
....|.+.+++|.|+++.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|++.|
T Consensus 25 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 104 (385)
T TIGR00710 25 LPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQA 104 (385)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPS 170 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 170 (443)
++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+.|++.++..++..+.. +..||+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (385)
T TIGR00710 105 FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLSLAGILLSALIFFILPET 183 (385)
T ss_pred cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999888776 99999999888777665544 445654
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
++. + ++. +.++...++++.+++|+++...+...
T Consensus 184 ~~~-------------~------------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (385)
T TIGR00710 184 LPY-------------E------------------ARI----------------QISTYFETFLLLLKSKMFWGYALIYG 216 (385)
T ss_pred CCC-------------c------------------ccC----------------CHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 320 0 000 00001123456677777776555443
Q ss_pred HHHHHHHhCchhhHhhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 329 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 329 (443)
...... .....+.|.+++ +.+.++ .+.+.......++.+++.++.+++.||+++|+.+..+..+..++...+..
T Consensus 217 ~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 217 ASFGGF----FAFFSGAPFVYIDIMGVSP-SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI 291 (385)
T ss_pred HHHHHH----HHHHHcChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 234556677666 456554 78888888899999999999999999999999887776666655554443
Q ss_pred HHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 013431 330 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 401 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 401 (443)
.... ...............+.......+.......|..| ++++++.++.+.....++.+.+.+.+.+.+.
T Consensus 292 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 292 TAIL-GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2211 11122222222222222222233344456667766 6799999999988877777777777744443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=262.29 Aligned_cols=362 Identities=13% Similarity=0.090 Sum_probs=239.2
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
...|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|++.|+
T Consensus 57 ~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 136 (476)
T PLN00028 57 PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc----CC----ccchHHHHhhhhHHHHHHHHHH
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI----NA----VGGWRYMYGLSAPLALLMGIGM 164 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~----~~----~~~wr~~f~~~~~~~~~~~~~~ 164 (443)
+.+... ....++.|++|+++|++++++.....++|..+++.+.+.+. +. ..+||+.|++.++++++..+..
T Consensus 137 ~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 137 SLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred HHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 988654 45668899999999999999998777777777766554332 11 1289999999998887776655
Q ss_pred hcCCCC-hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchh
Q 013431 165 WSLPPS-PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK 243 (443)
Q Consensus 165 ~~~~es-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
++++++ |+ ++.++.. + + .+.++.+....+++.+++++.|
T Consensus 216 ~~~~~~~p~--------------~~~~~~~-------~-----------------~--~~~~~~~~~~~~~~~~~~~~~~ 255 (476)
T PLN00028 216 LTLGQDLPD--------------GNYRELK-------K-----------------S--GTMPKDSFSKVLRYGVTNYRTW 255 (476)
T ss_pred HHHcCcCCC--------------CchhhHH-------h-----------------c--CccccccHHHHHHHHHcCchhH
Confidence 554432 21 0000000 0 0 0000000112355667777776
Q ss_pred HHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEE----ehhhH
Q 013431 244 AFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL----IGGVC 318 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~----~~~~~ 318 (443)
...+......... .....+.|.++.+ .|.+. .+++.......++.++++++.|+++||++||+.. .....
T Consensus 256 ~~~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~ 330 (476)
T PLN00028 256 ILALTYGYSFGVE----LTMDNIIAEYFYDRFGLSL-ETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWI 330 (476)
T ss_pred HHHHHHHHHHHHH----HHHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHH
Confidence 6555433332222 2245567777655 46665 7788899999999999999999999999876321 11111
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 319 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
...+..+....... .++.........+...+... ..+..+.+..+..| +.+|++.|+.+..+.+|+.++|.+.+ .
T Consensus 331 ~~~l~~i~~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~ 405 (476)
T PLN00028 331 VQTLGGVFCIWLGR--ANSLGAAIVVMILFSIFVQA-ACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T 405 (476)
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHH-hhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h
Confidence 11111111111110 11122222222222222222 22234456667654 78999999998877777777776654 1
Q ss_pred HHhhccchhhhHHHHHHHHHHHHhhhc
Q 013431 399 KELLGAENIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 399 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
.+..+|...|.+.+++.+++.++.++.
T Consensus 406 ~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 406 GSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred cCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 123357788888887777776655443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=258.44 Aligned_cols=368 Identities=20% Similarity=0.185 Sum_probs=276.4
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHhhhhhh
Q 013431 19 VAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGL 96 (443)
Q Consensus 19 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 96 (443)
.+++++|++|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 678999999999999999999999999999999999999999999999999999998864 556789999999999999
Q ss_pred hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cCCCChHHHH
Q 013431 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLL 175 (443)
Q Consensus 97 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~es~~~~~ 175 (443)
.+|+...+..+|.|++||++..++..++..+|.+++.++++++.+...||+.+|++.++.+++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence 999999999999999999999999999999999999999999999844999999999999999877665 45565531
Q ss_pred HhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHH
Q 013431 176 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 255 (443)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (443)
.....++|.+...+...++..+++.+.+++++++++.+|...+..+....
T Consensus 223 -----------------------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~- 272 (466)
T KOG2532|consen 223 -----------------------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW- 272 (466)
T ss_pred -----------------------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH-
Confidence 01111112222222222222222257789999999999888865544444
Q ss_pred HHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceE---------EehhhHHHHHHHHH
Q 013431 256 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL---------LIGGVCGIALSLLL 326 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---------~~~~~~~~~~~~~~ 326 (443)
+...+..|.|.|+++...-+..+.|+..++..+...+..++.|.++||..+|.. -.++....++.++.
T Consensus 273 ---~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~ 349 (466)
T KOG2532|consen 273 ---GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLV 349 (466)
T ss_pred ---HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHe
Confidence 445688999999998644444899999999999999999999999999876411 11233333333333
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH---hhc
Q 013431 327 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---LLG 403 (443)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g 403 (443)
+.+. +..+.+..+.++.+..+..+....... .-..+. .+++.+..+|+.+....+.+.++|.+.|.+.. ...
T Consensus 350 l~~~---~~~~~~~a~~~l~~~~~~~g~~~~Gf~-~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~e 424 (466)
T KOG2532|consen 350 LAFT---SDEHRLLAVILLTIAIGLSGFNISGFY-KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREE 424 (466)
T ss_pred eeec---CCCcchHHHHHHHHHHHHcccchhhhH-hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHH
Confidence 3332 112232333333333333322222211 223333 34889999999999999999999999999983 346
Q ss_pred cchhhhHHHHHHHHHHHHhhhcc
Q 013431 404 AENIFLLFAAIAFLAVLFIVRTV 426 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
|+..|++.+++.+++.++..++-
T Consensus 425 W~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 425 WRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHhchheeEee
Confidence 88999999999988887655553
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=255.97 Aligned_cols=355 Identities=19% Similarity=0.134 Sum_probs=253.8
Q ss_pred CCcchhhhhhcchhhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 013431 13 CSRPSLVAQLGSTFRL-----FSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGR 87 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 87 (443)
...|.+.+++|.+..+ .|++.+++.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|
T Consensus 35 ~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (408)
T PRK09874 35 PFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILR 114 (408)
T ss_pred hhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3468888999988654 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hc
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WS 166 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~ 166 (443)
++.|++.+ ..+....++.|++|+++|++++++...+..+|..++|.+++.+.+.. +||+.|++.++..++..+.. ++
T Consensus 115 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 192 (408)
T PRK09874 115 ALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLRPVFFITASVLFLCFLVTLFC 192 (408)
T ss_pred HHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999865 56778888999999999999999999999999999999999988776 89999999888777665543 44
Q ss_pred CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHH
Q 013431 167 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI 246 (443)
Q Consensus 167 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (443)
++|+++. .+++ ++ .+..+..+.+++++.+...
T Consensus 193 ~~~~~~~-------------~~~~--------------------~~---------------~~~~~~~~~~~~~~~~~~~ 224 (408)
T PRK09874 193 IRENFQP-------------VSKK--------------------EM---------------LHMREVVTSLKNPKLVLSL 224 (408)
T ss_pred hccCccc-------------ccch--------------------hh---------------hHHHHHHHhCcCCchHHHH
Confidence 5543210 0000 00 0000122334555544322
Q ss_pred HHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCch---hHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHH
Q 013431 247 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA---DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 323 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 323 (443)
....+.... .......+.+.+..+.+.+... ..+......+++.+++.+..|++.||++||+.+..+..+..+.
T Consensus 225 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 301 (408)
T PRK09874 225 FVTTLIIQV---ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLL 301 (408)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 221111111 1112344555565654333211 2345556667888888999999999999999887776655554
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 013431 324 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
.+..... ++.+.... ..+..+.......+...+...+..|++++|+.+++.+....+|..++|.+.|.+.+..|
T Consensus 302 ~~~~~~~-----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g 375 (408)
T PRK09874 302 LIPMSFV-----QTPLQLGI-LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG 375 (408)
T ss_pred HHHHHHh-----ccHHHHHH-HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 4443321 22222222 22223333333334444566777888999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHhhhcc
Q 013431 404 AENIFLLFAAIAFLAVLFIVRTV 426 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
++..|.+.+++.+++.+..+...
T Consensus 376 ~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 376 FRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777655443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=251.78 Aligned_cols=342 Identities=17% Similarity=0.164 Sum_probs=246.4
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 96 (443)
.+++++|.|..++|++.+...++..+.++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+.
T Consensus 36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~ 115 (400)
T PRK11646 36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTL 115 (400)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH-HhcCCCChHHHH
Q 013431 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLPPSPRWLL 175 (443)
Q Consensus 97 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~~~~~ 175 (443)
..|...+++.|++|+++|++++++.....++|..+||.+++++. .. +||+.|++.++..++..+. .++.||.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~~~~--- 190 (400)
T PRK11646 116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPAYKL--- 190 (400)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 89999999999999999999999999999999999999999988 55 9999999988777665443 344443110
Q ss_pred HhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHH
Q 013431 176 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 255 (443)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (443)
+ + .+++.+.++++.+++|.++...+........
T Consensus 191 -----------~---------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (400)
T PRK11646 191 -----------S---------------T---------------------VRTPVREGMTRVLRDKRFVTYVLTLTGYYML 223 (400)
T ss_pred -----------c---------------c---------------------cchhhHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 0 0 0000112355677777766544332222221
Q ss_pred HHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-ccCCceEEehhhHHHHHHHHHHHHHHHHh
Q 013431 256 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIGGVCGIALSLLLLSAYYKIL 334 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (443)
. .....+.|.+.++.+.++ .+.+.......+....+....+++.| |.+.++.+..+..+.+++...+...
T Consensus 224 ~----~~~~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---- 294 (400)
T PRK11646 224 A----VQVMLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---- 294 (400)
T ss_pred H----HHHHHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----
Confidence 1 123456788888876654 67777777777766665555566555 4555555555555555554444321
Q ss_pred ccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc----cchhhhH
Q 013431 335 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----AENIFLL 410 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~ 410 (443)
++.+.......+...+.. ...|...++..|..|+++||+++|+.+....+|..++|.+.|.+.|..+ ....+..
T Consensus 295 -~~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~ 372 (400)
T PRK11646 295 -SNLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMM 372 (400)
T ss_pred -hhHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHH
Confidence 222222222222222222 3334445778899999999999999999999999999999999999853 2344554
Q ss_pred HHHHHHHHHHH
Q 013431 411 FAAIAFLAVLF 421 (443)
Q Consensus 411 ~~~~~~~~~~~ 421 (443)
.+.+.++..+.
T Consensus 373 ~~~~~~~~~~~ 383 (400)
T PRK11646 373 LGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHH
Confidence 45555544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=252.03 Aligned_cols=354 Identities=15% Similarity=0.051 Sum_probs=247.7
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
..|.+.+|++.++.+.+++.+.+.+++.++++++|+++||+||||+++.+..+.+++++++.++++. ++.|+++|++
T Consensus 25 ~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~ 101 (393)
T PRK11195 25 AAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIG 101 (393)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3466788999999999999999999999999999999999999999999999999999888777664 7889999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 173 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~ 173 (443)
.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+...++..+..+.+||+|+.
T Consensus 102 ~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 179 (393)
T PRK11195 102 AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLGAR 179 (393)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 9999999999999999999999999999999999999999999998875 48888777766655555555677876521
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
. ++. +.++... ..+ .....+.++++|..+.......+.+
T Consensus 180 ~------~~~-----------------------~~~~~~~---~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (393)
T PRK11195 180 R------PGQ-----------------------SWNPIAL---LRD---------FFHACRVLWRDKLGRFSLAGTTLFW 218 (393)
T ss_pred c------ccc-----------------------CCCHHHH---HHH---------HHHHHHHHHhCchhHHHHHHHHHHH
Confidence 0 000 0000000 000 0011345677777665444333322
Q ss_pred HHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 332 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (443)
.... ...+..|.+.++ .+.++ .+.+.......++.+++++..+++.||.++++.+..+. ..++....+..
T Consensus 219 ~~~~----~~~~~~~~~~~~~lg~s~-~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~--- 289 (393)
T PRK11195 219 GAGA----TLRFLVLAWAPVALGITL-NQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL--- 289 (393)
T ss_pred HHHH----HHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH---
Confidence 2221 233444555555 34444 78999999999999999999999999988887666553 22222222221
Q ss_pred HhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccc-cchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHH
Q 013431 333 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 411 (443)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (443)
.++.+.......+.+.+.+....+ ..+..++..|++. +|++.++.+..++++..++..+.+.+ +..|.+..+...
T Consensus 290 --~~~~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 365 (393)
T PRK11195 290 --QHSLLPAYPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIV 365 (393)
T ss_pred --HhHHHHHHHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHH
Confidence 122222222222333333333333 3356677756554 79999999999999999999998844 777877777766
Q ss_pred HHHHHHHHHHhhhcc
Q 013431 412 AAIAFLAVLFIVRTV 426 (443)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (443)
+...++...+.+.+.
T Consensus 366 ~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 366 GFGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555555444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=241.09 Aligned_cols=357 Identities=18% Similarity=0.199 Sum_probs=282.7
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL---GVLLVGRLLYG 91 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~---~~l~~~r~l~G 91 (443)
.+.|.+|+|+|++|.+++.++..+..++..++.|.+.||||.|++..++.++..+-.+..+++.+. +++++.+.+.|
T Consensus 37 ~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G 116 (417)
T COG2223 37 GVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLG 116 (417)
T ss_pred HhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHh
Confidence 466779999999999999999999999999999999999999999999999999999999987554 49999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccc---hHHHHhhhhHHHHHHHHHHh-cC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG---WRYMYGLSAPLALLMGIGMW-SL 167 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~---wr~~f~~~~~~~~~~~~~~~-~~ 167 (443)
++. ..+....+.+++|+|++++|.++|+.. ..|+|..+...++..++... + ||.+..+..+..++..+..+ .+
T Consensus 117 ~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 117 LAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred ccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 975 588889999999999999999999999 99999999888888888777 6 99998888888877665544 45
Q ss_pred CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccc-cchhhhccCCchhHHH
Q 013431 168 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE-GSFLEVFQGPNLKAFI 246 (443)
Q Consensus 168 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 246 (443)
.|.|... . +.++.. ..++.+.++++.|.+.
T Consensus 194 ~d~p~~r------------------------------------------------~-~~~~~~~~~~~~v~~~~~~W~ls 224 (417)
T COG2223 194 NDVPEHR------------------------------------------------A-SVKPQLPAQLKAVFSNKDTWLLS 224 (417)
T ss_pred CCChhhh------------------------------------------------c-cccccchhHHHHHhcCcchHHHH
Confidence 5544210 0 001111 4567788899999888
Q ss_pred HHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHH
Q 013431 247 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 326 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 326 (443)
+. ++..++++..+..++|.++++....++.+++.........+.+.++.+|+++||+|.+|++...+..++++...
T Consensus 225 ll----Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~ 300 (417)
T COG2223 225 LL----YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAAL 300 (417)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHH
Confidence 54 44444455568889999988865555588889999999999999999999999999999999988888888777
Q ss_pred HHHHHHHhc--cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-
Q 013431 327 LSAYYKILG--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG- 403 (443)
Q Consensus 327 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g- 403 (443)
+........ .+.............+.+.+-. ..+.++...+| ++.|.+.|+...++.+|+..-|...|...+.+|
T Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~ 378 (417)
T COG2223 301 LSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS 378 (417)
T ss_pred HHccccccccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence 765432111 1222333333333444444444 44588888887 578999999999999999999999999999998
Q ss_pred cchhhhHHHHHHHHHHHHhhhccccC
Q 013431 404 AENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
+...|+++..+.+++.++.+....++
T Consensus 379 ~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 379 YTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77788888888888877666554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=249.88 Aligned_cols=331 Identities=20% Similarity=0.252 Sum_probs=236.1
Q ss_pred CCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013431 10 PSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 89 (443)
Q Consensus 10 ~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 89 (443)
......|++.+++|+|+++.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|++
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 88 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL 88 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLP 168 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~ 168 (443)
.|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.+.. +||+.|++.+++.++..+ ..+++|
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988876 999999998887776654 345566
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|+++. + ++ ++. +.++...++++.++++..+...+.
T Consensus 168 ~~~~~-------------~--------------~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 202 (377)
T PRK11102 168 ETLPK-------------E--------------RR--QPF----------------HLRTTIRNFASLFRHKRVLGYMLA 202 (377)
T ss_pred ccCcc-------------c--------------cc--CCC----------------ChHHHHHHHHHHHcChHHHHHHHH
Confidence 64320 0 00 000 000011234566777766554443
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
..+... +...+..+.|.++.+ .+.++ .+.+.......++.+++.++.+++.||+++|+.+..+.....+..+.+
T Consensus 203 ~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 277 (377)
T PRK11102 203 SGFSFA----GMFSFLTAGPFVYIELNGVSP-QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWL 277 (377)
T ss_pred HHHHHH----HHHHHHHcCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 322222 222344455555544 56654 788899999999999999999999999999998877765544333222
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHH-HHHHHHHHh
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF-GSNAIVTFA 394 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~ 394 (443)
...... +...+..........+..... .+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 278 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 278 VVSALL-DLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHH-hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 221110 111222222222222222222 2222245567666 789999999877643 444555544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=248.05 Aligned_cols=398 Identities=21% Similarity=0.292 Sum_probs=288.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhhhhh
Q 013431 24 STFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-------GLGVLLVGRLLYGLGIGL 96 (443)
Q Consensus 24 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~~ 96 (443)
.++.-.+.+..+..+|..+||++.|+++||+|||+++...++++.+++++++++. -.+++...|++.|+|.|+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 4566688999999999999999999999999999999999999999999888753 246888999999999999
Q ss_pred hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc----CCcc----------chHHHHhhhhHHHHHHHH
Q 013431 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI----NAVG----------GWRYMYGLSAPLALLMGI 162 (443)
Q Consensus 97 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~----~~~~----------~wr~~f~~~~~~~~~~~~ 162 (443)
-+|...+..+|....++||...+...+..++|.+.|.+++..+. ...+ =||..|.+.+++++....
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly 240 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY 240 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888777776655433 1111 399999999999999999
Q ss_pred HHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCch
Q 013431 163 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 242 (443)
Q Consensus 163 ~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
..+.+|||++|..... ++.+.+.+.. .++... +.++..+........++....+...+..+ .
T Consensus 241 ~Rl~M~Et~~Y~al~~--------~~~~~a~~d~---~k~~~~------~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-h 302 (538)
T KOG0252|consen 241 FRLKMPETARYTALVS--------KKLKQAAGDM---KKVLSV------DIEAESTAESDVPPPSNSFGLFSRLFLRW-H 302 (538)
T ss_pred hhhcCCcchhHHHHhh--------cCHhhhhhcc---cccccc------ccchhhccccCCCCcccccchHHHHHHHH-H
Confidence 9999999999863321 1112221111 111100 00000000000111111112233333333 2
Q ss_pred hHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHH-------HH-HHHHHHHHHHHHHHHHHhhcccCCceEEe
Q 013431 243 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAT-------RV-SVVIGVFKLVMTWIAVAKVDDLGRRPLLI 314 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 314 (443)
-..++..+..++..-...+....+...+++..+..+..+.. .. ..+...+.++|..+...++|++||++..+
T Consensus 303 g~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~ 382 (538)
T KOG0252|consen 303 GKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQL 382 (538)
T ss_pred HHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHH
Confidence 24555666777776666667778888888877765533222 11 12222333446677778899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHh
Q 013431 315 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 394 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 394 (443)
.++.++.+..+.++...... .......+...+...+...+.+.....+.+|.+|++.|+++.|+....+..|++++...
T Consensus 383 ~GF~~~~i~~~~~~~~y~~~-~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~ 461 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYNQL-ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFG 461 (538)
T ss_pred hhHHHHHHHHHHHcCCcccc-cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHH
Confidence 99999999888887643311 12233344455556666777777888999999999999999999999999999999999
Q ss_pred hHHHHH-----hhccchhhhHHHHHHHHHHHHhhhccccCCCCCHHHHHhhh
Q 013431 395 FSPLKE-----LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 441 (443)
Q Consensus 395 ~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (443)
+.++.+ ..|.++.+++++++++++.+..++ .||+++++++|++++.
T Consensus 462 F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 462 FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKGKSLEEISNEE 512 (538)
T ss_pred hhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccccCHHHhcChh
Confidence 999999 778899999999999888776554 5699999999887654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=248.64 Aligned_cols=346 Identities=16% Similarity=0.143 Sum_probs=250.0
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 95 (443)
+.+++++|+|..++|++.+.+.+++.+++++.|+++||+|||+++.++..+.+++.++.+++++++.++++|++.|.+.+
T Consensus 32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 111 (395)
T PRK10054 32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS 111 (395)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCChHHH
Q 013431 96 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWL 174 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~~~~ 174 (443)
...+...++..|..|+++|++++++.....++|..++|.+++++.+ . +||..|++.++..++..+.. +++||+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~-- 187 (395)
T PRK10054 112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRSEK-- 187 (395)
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhcccc--
Confidence 8888899999999999999999999999999999999999998774 4 89999998887777664433 34554321
Q ss_pred HHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHH
Q 013431 175 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 254 (443)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (443)
++ ++ + +++..+.++.+|+|.++...+...+..+
T Consensus 188 -----------~~------------------~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (395)
T PRK10054 188 -----------AI------------------AT--E----------------TGSVWSPSVLLQDKALLWFTCSGFLASF 220 (395)
T ss_pred -----------cc------------------cc--c----------------hhhhhhhhhhccCceehHHHHHHHHHHH
Confidence 00 00 0 0000112556788887766655444443
Q ss_pred HHHhCchhhHhhHHHHHH---hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHH
Q 013431 255 QQITGQPSVLYYAGPILQ---SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 331 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
.... ...+.+.+.. +.+.+. ...+.......+.........+++.||.++|+.+..+..+..++...+...
T Consensus 221 ~~~~----~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 294 (395)
T PRK10054 221 VSGA----FASCISQYVMVVADSDFAE-KVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS- 294 (395)
T ss_pred HHHH----hhhhHHHHHHHhcccchHH-HHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-
Confidence 3222 2223333332 223322 455666666667777777888999999999988777766666555544321
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHH
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 411 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (443)
.++.+...... ...+.......|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.|+...+.+.
T Consensus 295 ---~~~~~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 295 ---GNSLLLWGMSA-AVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred ---chHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 11222222222 22222233334455567888889999999988765 67789999999999999999988888776
Q ss_pred HHHHHHHHHHhh
Q 013431 412 AAIAFLAVLFIV 423 (443)
Q Consensus 412 ~~~~~~~~~~~~ 423 (443)
+....++.++..
T Consensus 370 ~~~~~~~~~~~~ 381 (395)
T PRK10054 370 ALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHH
Confidence 665555544433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=243.09 Aligned_cols=331 Identities=19% Similarity=0.144 Sum_probs=239.6
Q ss_pred CCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013431 10 PSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 89 (443)
Q Consensus 10 ~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 89 (443)
......|.+++|+|.|+++.|++.+.+.+++.+++++.|+++||+||||++.++..+..++.+.+ .+++++.+++.|++
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTAL 96 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999988888887 78899999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCcc-chHHHHhhhhHHHHHHHHHHhcCC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
.|++.+...+.....+.|++| ++|++++++.+.+.++|..+++.+++.+.+... +||+.|...++..++... .++|
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~ 173 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIP 173 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhh
Confidence 999999888888889999886 689999999999999999999999888776542 499998877665443322 2233
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|.++ ++++ +++.++...++++|+|..+...+.
T Consensus 174 ~~~~----------------------------~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 205 (355)
T TIGR00896 174 QVRR----------------------------RVAA--------------------NQTTTRLTPVRIWRSPLAWQVTVF 205 (355)
T ss_pred hhcc----------------------------ccCC--------------------CCCCCCCCCchhhcCHhHHHHHHH
Confidence 3211 0000 000011234566777777655543
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC-CceEEehhhHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG-RRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~ 327 (443)
..+..... .....+.|.++++.+.+. .+.+.......++.++++++.|++.||++ ||+.+..+..+.+++.+.+
T Consensus 206 ~~~~~~~~----~~~~~~lp~~~~~~g~~~-~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T TIGR00896 206 FGLQSGLY----YSLIGWLPAILISHGASA-ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL 280 (355)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 33333322 235678898888887765 78888999999999999999999999995 4555555555555554444
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeec-ccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSE-IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 404 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 404 (443)
.... ...... ...+. +.......+...+...+ ..+++++++..++.+...+++..++|.+.|.+.|+.|.
T Consensus 281 ~~~~-----~~~~~~-~~~l~-g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 281 LFAP-----MHGLWA-WALVL-GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHhh-----hhHHHH-HHHHH-HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3321 111111 12222 22222223333233433 33456778999999999999999999999999998874
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=248.84 Aligned_cols=330 Identities=27% Similarity=0.365 Sum_probs=244.4
Q ss_pred cc-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 15 RP-SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 15 ~p-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
.| .+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|++.|++
T Consensus 19 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 98 (352)
T PF07690_consen 19 LPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIG 98 (352)
T ss_dssp HH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccc
Confidence 45 78899999999999999999999999999999999999999999999999999977777778888999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH-HhcCCCChH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLPPSPR 172 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~~ 172 (443)
.+...+...+++.|++|+++|++++++.....++|..++|.+++.+.+.. +||+.|++.+++.++..++ .++++++++
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 99 SGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFLISAILSLIAAILFILFLPEPPP 177 (352)
T ss_dssp HHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred cccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-ccccccccccchhhhhhhhHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999988776 8999999999999888664 344544332
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhcccccccccccc-chhhhccCCchhHHHHHHHH
Q 013431 173 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG-SFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (443)
... . ++..+++ .+.+++.. .++++.+++.+|........
T Consensus 178 ~~~---------------------------~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T PF07690_consen 178 PRE---------------------------R--ESPKESE-----------SKKPKPLKPGFKSLFKNPVLWILLIAFFL 217 (352)
T ss_dssp TTT-------------------------------SSTTTT-------------HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred ccc---------------------------c--ccccccc-----------cccccccccccccccccchhhhhhhhhhH
Confidence 000 0 0000000 00111112 35667777766633333333
Q ss_pred HHHHHHhCchhhHhhHHHH-HHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPI-LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
..+.. .....+.|.+ .++.+.+...+.+.......+..+++.++.+++.||+++|+..........+....+...
T Consensus 218 ~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 218 FFFVF----SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHH----HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHH----HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 2366778887 455566623788888999999999999999999999999877766665555555544432
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHH
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 392 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 392 (443)
... ++.........+ .+.......+....+..|..|++++|++.|+.+...+++..++|
T Consensus 294 ~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 294 PFS--SSPVWLIIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHH--CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 221 122233333333 33333344556668899999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=245.41 Aligned_cols=343 Identities=17% Similarity=0.111 Sum_probs=240.9
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hccchHHHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVGRLLY 90 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~ 90 (443)
..|++++++|+|+++.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++ .++++++.++++|+++
T Consensus 48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~ 127 (438)
T PRK10133 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFII 127 (438)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999886 5689999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccC-C-----------------c-------cc
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-A-----------------V-------GG 145 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~-----------------~-------~~ 145 (443)
|++.+...+..++++.|+.|+++|.+.+++.+..+.+|..+++.+++.+.. . . .+
T Consensus 128 G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~ 207 (438)
T PRK10133 128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLS 207 (438)
T ss_pred HHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHH
Confidence 999999999999999998877777778999999999999999998765430 0 0 15
Q ss_pred hHHHHhhhhHHHH-HHHHH-HhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhcccc
Q 013431 146 WRYMYGLSAPLAL-LMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS 223 (443)
Q Consensus 146 wr~~f~~~~~~~~-~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (443)
||++|+....+.. +..+. ....||.+. ++ +++
T Consensus 208 w~~~f~~~~~v~~~~~~~~~~~~~p~~~~---------------------------------~~-------------~~~ 241 (438)
T PRK10133 208 VQTPYMIIVAIVLLVALLIMLTKFPALQS---------------------------------DN-------------HSD 241 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCc---------------------------------cc-------------ccc
Confidence 6666654333332 32222 223343210 00 000
Q ss_pred ccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHH-HHh-cCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 013431 224 YTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQS-AGFSAAADATRVSVVIGVFKLVMTWIAV 301 (443)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 301 (443)
.+..+...+.++++++|.++...+..++...... ....|.+.+ .++ .+.++ .+.+.......++.+++++..+
T Consensus 242 ~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~g~s~-~~ag~~~~~~~~~~~vG~~~~g 316 (438)
T PRK10133 242 AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTA-GFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_pred ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000112235677888887765544433333322 234455655 354 45554 8899999999999999999999
Q ss_pred HhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHH
Q 013431 302 AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 381 (443)
Q Consensus 302 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 381 (443)
++.||+++|+.+..+..+..+.+.+.... ... .......+...+.+. ..|..++...|..|+ +.+++.++..
T Consensus 317 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~l~glg~~~-i~P~~~s~a~~~~~~-~~~~as~l~~ 388 (438)
T PRK10133 317 WLISRFAPHKVLAAYALIAMALCLISAFA-----GGH-VGLIALTLCSAFMSI-QYPTIFSLGIKNLGQ-DTKYGSSFIV 388 (438)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CCh-HHHHHHHHHHHHHHH-HHHHHHHHHHcccch-hhccchhHHh
Confidence 99999999998877765555444333221 111 222233333333333 344555777777664 5678888876
Q ss_pred HHHHHHHHHHHHhhHHHHHhhc-cchhhhHHHHHHH
Q 013431 382 LTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAF 416 (443)
Q Consensus 382 ~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~ 416 (443)
+ ..+|+.++|.+.|.+.|..| .+..|++.....+
T Consensus 389 ~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 389 M-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred H-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 4 55788999999999999887 5666665444333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=246.43 Aligned_cols=345 Identities=24% Similarity=0.237 Sum_probs=235.8
Q ss_pred Ccchhhhhhc--chhhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHH-----
Q 013431 14 SRPSLVAQLG--STFRLFSLALCG-----SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG----- 81 (443)
Q Consensus 14 ~~p~i~~~~~--~s~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~----- 81 (443)
..+.+.+++. .++.+.+.+.+. ..++..+++++.|+++||+||||++..+.++..++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
T TIGR00883 15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIW 94 (394)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHH
Confidence 3455666643 445566655443 3334457899999999999999999999999999999999999875
Q ss_pred ---HHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc--------CCccchHHHH
Q 013431 82 ---VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMY 150 (443)
Q Consensus 82 ---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~~wr~~f 150 (443)
.+++.|+++|++.+...+...+++.|++|+++|++..++...+..+|..+++.++..+. +.. +||+.|
T Consensus 95 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~-~w~~~~ 173 (394)
T TIGR00883 95 APILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIPF 173 (394)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc-chHHHH
Confidence 48889999999999999999999999999999999999999999999999998876543 233 899999
Q ss_pred hhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccc
Q 013431 151 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 230 (443)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (443)
++.++..++..+.....||+|++...+ .++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~ 207 (394)
T TIGR00883 174 LVSAVLVLIGLYLRRNLEETPVFEKAQ----------------------------------------------EKHKKKR 207 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHH----------------------------------------------hcccccc
Confidence 988777766655555667765421100 0001112
Q ss_pred cchhhhccCCc--hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013431 231 GSFLEVFQGPN--LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 307 (443)
Q Consensus 231 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 307 (443)
.+.++.+++++ ++.......+ ..........+.|.+.++ .+.++ .+.+.......+...++.++.+++.||+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 282 (394)
T TIGR00883 208 GPIRETLTKHRKPFLLGLGLVIA----TTTTFYLITTYLPTYLTQTLGLSA-NSALLVLMLSLILFFITIPLSGALSDRI 282 (394)
T ss_pred CCHHHHHHhchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455555554 2222222222 222223456678888754 55554 6788888888899999999999999999
Q ss_pred CCceEEehhhHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHH-HHHH
Q 013431 308 GRRPLLIGGVCGIALSL-LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNF 385 (443)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~ 385 (443)
+||+.+.....+..+.. ..+.... ...+........+..+.......+...++..|.+|++.|+++.++.. ....
T Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 359 (394)
T TIGR00883 283 GRRPVLIIFTVLAALLAVPLLMALL---DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGA 359 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHH
Confidence 99987664443333322 1211111 11222222222233333332333445588899999999999999854 4566
Q ss_pred HHHHHHHHhhHHHHHhhc-cchhhhHHHH
Q 013431 386 GSNAIVTFAFSPLKELLG-AENIFLLFAA 413 (443)
Q Consensus 386 ~g~~~~~~~~g~l~~~~g-~~~~~~~~~~ 413 (443)
++..++|.+.|.+.|+.| +...++....
T Consensus 360 ~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 360 IFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 788899999999999988 5554444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=242.87 Aligned_cols=330 Identities=32% Similarity=0.392 Sum_probs=272.5
Q ss_pred CCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013431 11 SHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 11 ~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 90 (443)
.+...|.+.+++|.++.+.+++.+...++..++++++|+++||+|||+.+..+..+..++.+...++++++.+++.|++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (352)
T cd06174 18 LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLL 97 (352)
T ss_pred hHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34456888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCC
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 170 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 170 (443)
|++.+...+...+++.|++|+|+|++.+++......+|..+++.+++.+.+.. +||+.+++.++..++..+...+++
T Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-- 174 (352)
T cd06174 98 GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLFLILAILGLLLALLLLFLL-- 174 (352)
T ss_pred HcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999999988877 899999998888777666554431
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
|.++...+..
T Consensus 175 ---------------------------------------------------------------------~~~~~~~~~~- 184 (352)
T cd06174 175 ---------------------------------------------------------------------RLLLLLALAF- 184 (352)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHH-
Confidence 1223333222
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCce-EEehhhHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-LLIGGVCGIALSLLLLS 328 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~ 328 (443)
+...........+.|.+.++. +.++ .+.+.......++..++.++.+++.||++||+ .+..+.....++...+.
T Consensus 185 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 185 ---FLLSFGYYGLLTYLPLYLQEVLGLSA-AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred ---HHHHhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222333345677888888876 5544 88899999999999999999999999999998 77777777777666655
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 408 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 408 (443)
.. ++ ...........+.......+....+..|..|+++|++.+|+.+....++..++|.+.+.+.+..+++..+
T Consensus 261 ~~-----~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~ 334 (352)
T cd06174 261 LA-----PS-LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVF 334 (352)
T ss_pred Hh-----cc-HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHH
Confidence 42 22 2333334444444444555666789999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhh
Q 013431 409 LLFAAIAFLAVLFIV 423 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (443)
.+.+++.+++.+...
T Consensus 335 ~~~~~~~~i~~i~~~ 349 (352)
T cd06174 335 LILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHhe
Confidence 988888877766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=245.64 Aligned_cols=344 Identities=17% Similarity=0.155 Sum_probs=240.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.+++++.+|+++++.|++.+.+.+.+.+++|+.|+++|||.||+++.+|..+|.++.++++++..||++.++|.+.|+|.
T Consensus 56 ~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 56 LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGE 135 (493)
T ss_pred hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc-CCCChHH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRW 173 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~es~~~ 173 (443)
+...|..+++++|.+|+++|++.+++++.+..+|..+|.+.+..+......|||.|+..++++++..++.++ .+|.+|
T Consensus 136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r- 214 (493)
T KOG1330|consen 136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER- 214 (493)
T ss_pred hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc-
Confidence 999999999999999999999999999999999999999999998888756999999999999988776654 444332
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
+..|+. .+++ +.........++.+.+.+++.+....+.+....
T Consensus 215 -------------ga~~~~-------~~~~-----------------~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~ 257 (493)
T KOG1330|consen 215 -------------GARDEV-------DGEN-----------------KMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQ 257 (493)
T ss_pred -------------cccccc-------ccCC-----------------cCCCCccchHHHHHHHHccCceeeehHHHHHHH
Confidence 000000 0000 000011112234555566665554444433333
Q ss_pred HHHHhCchhhHhhHHHHHH----hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc----eEEehhh----HHHH
Q 013431 254 FQQITGQPSVLYYAGPILQ----SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR----PLLIGGV----CGIA 321 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~----~~~~~~~----~~~~ 321 (443)
+.. +.+.+|.|.+.. -.+.+. ....++..+...++.+|.+.+|.++||+.|+ ....... ....
T Consensus 258 fv~----Gs~sww~p~~~~~~~~~~~~~~-~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~ 332 (493)
T KOG1330|consen 258 FVI----GSLSWWAPAFIYYSYELIGFDH-NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAP 332 (493)
T ss_pred Hhc----cccchhhhhHHHHHHHHhCCcc-ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhh
Confidence 332 335555555433 234443 5666777788889999999999999994331 1222211 1111
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHH-HHHHHHHHHHhhHHHHH
Q 013431 322 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~ 400 (443)
.+...+..... ...........+++.+-...........-...|+.|+++|.+++++...+ ...|.+-+|.+.|.+.|
T Consensus 333 ~s~~~L~~~~~-~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 333 LSIPFLFLFPA-FTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence 11111111111 11222222222222222222222233346778999999999999998776 55566666779999988
Q ss_pred hh
Q 013431 401 LL 402 (443)
Q Consensus 401 ~~ 402 (443)
+.
T Consensus 412 ~l 413 (493)
T KOG1330|consen 412 KL 413 (493)
T ss_pred Hh
Confidence 64
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=240.35 Aligned_cols=336 Identities=16% Similarity=0.113 Sum_probs=245.4
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHH
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---APGLGVLLVGRLL 89 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l 89 (443)
...|.+++++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++.. .+|++.+++.|++
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l 103 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFI 103 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999999999999999999999988644 4689999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC-------------------------cc
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA-------------------------VG 144 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------------------------~~ 144 (443)
.|+|.|...+..++++.+..|+++|++.+++.+...++|..++|.+++.+... ..
T Consensus 104 ~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (410)
T TIGR00885 104 LTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLA 183 (410)
T ss_pred HHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876422 12
Q ss_pred chHHHHhhhhHHHHHHHHHHhc--CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccc
Q 013431 145 GWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKS 222 (443)
Q Consensus 145 ~wr~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
+||++|++.+++.++..+...+ .||.++ ++
T Consensus 184 ~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------------------------------------~~------------ 215 (410)
T TIGR00885 184 SVQTPYMIIGAVVLAVALLIMLTKMPALNH------------------------------------SD------------ 215 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------------------------------cc------------
Confidence 6999999988877765544433 232110 00
Q ss_pred cccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q 013431 223 SYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS-AAADATRVSVVIGVFKLVMTWIAV 301 (443)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g 301 (443)
+ ++.+...+.++++|+|+++...+..++....+. ....+.+.+.++.+.. +................+|+++++
T Consensus 216 ~-~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~ 290 (410)
T TIGR00885 216 A-KQISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGT 290 (410)
T ss_pred c-ccccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011234567788877776655555444443 3456777777664322 223344455666678899999999
Q ss_pred HhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHH
Q 013431 302 AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 381 (443)
Q Consensus 302 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 381 (443)
++.||+++|+.+..+..+..+..++... ...........+..++.+..+ |..++...+..+++.+..+.++..
T Consensus 291 ~l~~r~~~~~~l~i~~~~~~~~~ll~~~------~~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~ 363 (410)
T TIGR00885 291 WLISYLAAHKVLMAYAIIGMALCLGSIF------AGGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVM 363 (410)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHH
Confidence 9999999999877666665555554443 112233444445555555555 566688888888666544555554
Q ss_pred HHHHHHHHHHHHhhHHHHHhh------ccchhhhH
Q 013431 382 LTNFGSNAIVTFAFSPLKELL------GAENIFLL 410 (443)
Q Consensus 382 ~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~ 410 (443)
.. +|+++.|.+.|.+.|.. +.+..|++
T Consensus 364 ~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~ 396 (410)
T TIGR00885 364 AI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL 396 (410)
T ss_pred HH--hccchHHHHHHHHHHHhcccccCccchHHHH
Confidence 43 99999999999999964 35555554
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-30 Score=244.20 Aligned_cols=357 Identities=13% Similarity=0.044 Sum_probs=250.3
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHHHHHHHHHHHHHHhcc---chHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYALGALTTAYA---PGLGVLLV 85 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~~l~~ 85 (443)
.|...++.|.+.+++|.+ +.....+ ++.+++|+++||+ ||||. +..+.+..+++..++++. ++++.+.+
T Consensus 35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~ 112 (491)
T PRK11010 35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA 112 (491)
T ss_pred HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 567778889999999997 4444444 6899999999999 99885 667888887887777775 47889999
Q ss_pred HHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh
Q 013431 86 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 86 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 165 (443)
.+++.|++.+...+...+++.|++|++||+++.++...+..+|.++++.++.++.+...|||..|++.++..++..+..+
T Consensus 113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887323999999999888777766666
Q ss_pred cCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHH
Q 013431 166 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 245 (443)
Q Consensus 166 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (443)
++||+++.. + + ++ . .+++...++++.+++++.+..
T Consensus 193 ~~~e~~~~~------------~---------------~-~~----~-------------~~~~~~~~l~~~~~~~~~~~~ 227 (491)
T PRK11010 193 LAPEPTDTI------------P---------------V-PK----T-------------LEQAVVAPLRDFFGRNNAWLI 227 (491)
T ss_pred hcCCCcccc------------c---------------c-cc----c-------------hhhhHHHHHHHHHcCcCHHHH
Confidence 677754200 0 0 00 0 000001235566776766655
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHH-HhcCCCCchhHHHHH-HHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVS-VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 323 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 323 (443)
.....+...... ....+.+.++ ++.|++. .+.+... ....++.+++.++.|++.||+++|+.+..+..+.++.
T Consensus 228 ll~~~l~~~~~~----~~~~~~~~~l~~~~G~s~-~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 228 LLLIVLYKLGDA----FAMSLTTTFLIRGVGFDA-GEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444333322221 2333445554 4567766 6777776 4556799999999999999999988766555444443
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 013431 324 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
...+..... ..++.........+...+.+.... ..+++..+..+++.+++..|+.+....+|..+++.+.|.+.|..|
T Consensus 303 ~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G 380 (491)
T PRK11010 303 NAGYWLLSI-TDKNLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG 380 (491)
T ss_pred HHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 332221111 111222212122221222222222 224677788898999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHhhhc
Q 013431 404 AENIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
|...|.+.+++.+.+.+.....
T Consensus 381 ~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 381 WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888777776655543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=239.42 Aligned_cols=342 Identities=15% Similarity=0.114 Sum_probs=251.6
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH----HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKREL----IIAAVLYALGALTTAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 90 (443)
.|.+.+|+|.|.+++|++.+.+.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|+++
T Consensus 27 l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~ 104 (382)
T TIGR00902 27 FPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLF 104 (382)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHH
Confidence 5688899999999999999999999999999999999999985433 222222222 3445788999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCC
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 170 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 170 (443)
|.+.+...|...++..|+ +++|++..+....+.++|.+++|++++.+.+.. |||..|++.+....+..+ .+.++|+
T Consensus 105 ~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~f~~~~~~~~~~~~-~~~~~~~ 180 (382)
T TIGR00902 105 ALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNILAILTAGLAFMLI-GFLIKPT 180 (382)
T ss_pred HHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHHHHHHHHH-HHHcCCC
Confidence 999988899999887764 478899999999999999999999999999887 999998887655333332 3333332
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
++ ++++ ++ .++.++..+.++++|+|+++...+...
T Consensus 181 ~~-------------------------------~~~~-~~-------------~~~~~~~~~~~~~l~~~~~~~~l~~~~ 215 (382)
T TIGR00902 181 IP-------------------------------PKDA-IP-------------EDESQGDSAFIALLKNPMNLRFLAAVC 215 (382)
T ss_pred CC-------------------------------CCcc-cc-------------ccccccchhHHHHHcChHHHHHHHHHH
Confidence 21 0000 00 000111234678889988887776555
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
+..... ..+..+.|.++++.|.++ ...+.......+..+++..+.+++.||+++|+.+..+.....+....+...
T Consensus 216 l~~~~~----~~~~~~~~~~l~~~g~s~-~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T TIGR00902 216 LIQGAH----AAYYGFSAIYWQAAGISA-SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI 290 (382)
T ss_pred HHHHHH----HHHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 544433 335567788888888776 778888888999999999999999999999999988888888777666542
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHH-HHHHHHHHHHHhhHHHHHhhccchhhh
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL-TNFGSNAIVTFAFSPLKELLGAENIFL 409 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~ 409 (443)
++.+.......+....++.. .+....++++. |+++++++.++++. ...+|..++|.+.|.+.|+.|+ ..|.
T Consensus 291 -----~~~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~ 362 (382)
T TIGR00902 291 -----EAFPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV 362 (382)
T ss_pred -----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 22333333344444444333 33444778887 88999999999874 5678999999999999999985 6677
Q ss_pred HHHHHHHHHHH
Q 013431 410 LFAAIAFLAVL 420 (443)
Q Consensus 410 ~~~~~~~~~~~ 420 (443)
..+++.+++.+
T Consensus 363 ~~~~~~~~~~~ 373 (382)
T TIGR00902 363 FMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHH
Confidence 77777665544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=236.03 Aligned_cols=342 Identities=15% Similarity=0.071 Sum_probs=225.4
Q ss_pred chhhhhhcchhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLY-GALLGSILVYSIADFLGRKREL-IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
+.+++++|.|++++|++.+...+ ++.++.++.|+ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|..
T Consensus 40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 118 (393)
T PRK15011 40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF 118 (393)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34688999999999999876655 66666655666 9999999875 556676678888888999999887666555555
Q ss_pred hhhhchhhhhHhhhcCcccch--hhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH-HhcCCCC
Q 013431 94 IGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLPPS 170 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es 170 (443)
.+...|...+++.|+.++++| +...++.+++.++|.+++|++++.+.++. |||..|++.++..++..+. .+++||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~ 197 (393)
T PRK15011 119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLSAAVAFIVCGVMVWLFLPSM 197 (393)
T ss_pred HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 567788888888888776655 34568889999999999999999988877 9999999988877766554 4456765
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCC-chhHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKAFIIGG 249 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 249 (443)
++. + + ... + +. ... .+++ ..+......
T Consensus 198 ~~~-------------~---------------~-~~~--------------~--~~----~~~---~~~~~~~~~~~~~~ 225 (393)
T PRK15011 198 RKE-------------L---------------P-LAT--------------G--TL----EAP---RRNRRDTLLLFVIC 225 (393)
T ss_pred CCC-------------C---------------c-ccc--------------c--cc----ccc---ccccccHHHHHHHH
Confidence 420 0 0 000 0 00 000 0111 112222211
Q ss_pred HHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH
Q 013431 250 GLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
..... .+..+..+.|.++++ .+.++ .+.+.......+..+++.++.|+++||++||+.+..+.....+......
T Consensus 226 ~~~~~----~~~~~~~~~p~~l~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~ 300 (393)
T PRK15011 226 TLMWG----TNSLYIINMPLFIINELHLPE-KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML 300 (393)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 12211 122344567777765 45554 6777777777778888999999999999999876554443333322221
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 408 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 408 (443)
. . ++.+..+....+.....+.... ....+..|..|+ ++++++++.+...++|..++|.+.|.+.|..|++..+
T Consensus 301 ~-~----~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~ 373 (393)
T PRK15011 301 M-A----HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF 373 (393)
T ss_pred H-H----hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1 1 2222222222222122221111 223556788884 6999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHhh
Q 013431 409 LLFAAIAFLAVLFIV 423 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (443)
.+.++..+++.+..+
T Consensus 374 ~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 374 WFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666555444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=241.07 Aligned_cols=360 Identities=13% Similarity=0.054 Sum_probs=247.8
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGR-KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
+.+.+++|.+.+|+|++.+.+.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+++.|++.|++.
T Consensus 27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (418)
T TIGR00889 27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY 106 (418)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999965 77888889988889888899999999999999999988
Q ss_pred hhhchhhhhHhh--------hcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc
Q 013431 95 GLAMHGAPLYIA--------ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 166 (443)
Q Consensus 95 ~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 166 (443)
+...+...++.. |......|.+..| .+|..++|.+++.+.... +|+ +|++.++..++..+..++
T Consensus 107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-~~~-~f~~~~~~~~~~~~~~~~ 178 (418)
T TIGR00889 107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-SNI-QLYITAGSSALLGVFALT 178 (418)
T ss_pred ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-hhH-HHHHHHHHHHHHHHHHhc
Confidence 777776666542 2222234455554 467888888888763222 455 455666655555555667
Q ss_pred CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHH
Q 013431 167 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI 246 (443)
Q Consensus 167 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (443)
+||+|+- + + ++ +.+ .++..+.+.++++|+|.++...
T Consensus 179 ~~e~~~~--------~--------------------~--~~--~~~------------~~~~~~~~~~~~~k~~~~~~~~ 214 (418)
T TIGR00889 179 LPDIPVA--------K--------------------S--TA--KMS------------IKVMLGLDAFILFKNKRMAIFF 214 (418)
T ss_pred CCCCCCC--------c--------------------c--cc--ccC------------HHHHhhhhHHHHhcCCCeeeHH
Confidence 7876520 0 0 00 000 0000111245677888777666
Q ss_pred HHHHHHHHHHHhCchhhHhhHHHHHHhcCCCC-------chhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH
Q 013431 247 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSA-------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 319 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 319 (443)
+..++...... ....+.+.+.++.+.++ ....+.......+..+++.+..+++.||+|+|+.+..+.++
T Consensus 215 ~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~ 290 (418)
T TIGR00889 215 FFSMLLGAPLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHHhHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 55444433221 23455577777766442 14568888888899999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHH-HHHHHHHHHHHHhhHHH
Q 013431 320 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l 398 (443)
..++...+.... ........+....+..+.......+....++.|.+|++.|++++|+.+ ....+|..++|.+.|.+
T Consensus 291 ~~v~~~l~~~~~--~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l 368 (418)
T TIGR00889 291 WALRFGFFAYGD--PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM 368 (418)
T ss_pred HHHHHHHHHHcC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 766655544310 000011222222222222222333444477889999999999999997 56789999999999999
Q ss_pred HHhh------ccchhhhHHHHHHHHHHHHhhhccccCCCCC
Q 013431 399 KELL------GAENIFLLFAAIAFLAVLFIVRTVPETKGLS 433 (443)
Q Consensus 399 ~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (443)
.|+. ||+..|...+++.++++++.+++.+|++++-
T Consensus 369 ~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 369 VEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 9985 4778888888888888777777777776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=239.32 Aligned_cols=357 Identities=16% Similarity=0.066 Sum_probs=229.2
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh---ccc-----hHHHHHHHHH
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAP-----GLGVLLVGRL 88 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~-----~~~~l~~~r~ 88 (443)
.+++++|+|+.+.|++.+.+.++..++++++|+++||+||||++.++..+.++...... .++ ......++++
T Consensus 36 ~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (420)
T PRK09528 36 WLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI 115 (420)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999887666554433221 111 1111233344
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
+.|.+.....+....+..+ . ++++++.++......++|..++|++++.+.+. +|+..|++.++.+++..+..++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 116 YLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhccc
Confidence 4444333333333333322 2 24567788999999999999999999988764 899999998888877666555543
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
++++. + .+.. +++ ++.+++.+.++.++.+|+|.++...+.
T Consensus 192 ~~~~~-------------~-~~~~--------~~~------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~ 231 (420)
T PRK09528 192 PDAPS-------------T-AKVA--------NAL------------------GANASAVSLKDALALLKLPKFWFLVLY 231 (420)
T ss_pred ccccc-------------h-hhhc--------cch------------------hcccccccHHHHHHHccCCCeEeehHH
Confidence 32210 0 0000 000 000001111234567788877665543
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHh----cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQS----AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 324 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 324 (443)
......... ....+.|.++.+ .+.+. ...+.......+...++.++.|++.||+++|+.+..+.++..+..
T Consensus 232 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~ 306 (420)
T PRK09528 232 VIGVACFYD----VFDQQFPNFFASFFATPEQGT-RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRI 306 (420)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 323322221 122234444333 23332 567788888888899999999999999999998877777766665
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHH-HHHHHHHHHHHHHHhhHHHHHhhc
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
.++.+. ++.+.......+ .+.......+....+..|.+|++.+++..+. .++...+|.+++|.+.|.+.|..|
T Consensus 307 ~l~~~~-----~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G 380 (420)
T PRK09528 307 IGSGFA-----TGPLEVSILKLL-HAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG 380 (420)
T ss_pred HHHHhc-----ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 555431 223332222222 2222222222333677888899999988766 577788999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHhhhcccc
Q 013431 404 AENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
++..|...+++.++..++.....++
T Consensus 381 ~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 381 FQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998888877766655555544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=235.61 Aligned_cols=329 Identities=15% Similarity=0.119 Sum_probs=236.1
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
..|.+.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++
T Consensus 30 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (394)
T PRK11652 30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLG 109 (394)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCCCChH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPR 172 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~~ 172 (443)
.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+.. +||+.|++.++..++..+ ..++.||+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 110 TGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99888888889999999999999999999999999999999999987776 899999998877665544 4455676542
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHH
Q 013431 173 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 252 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (443)
.. + ++++.+.++++.+++|.++...+.....
T Consensus 189 ~~------------~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (394)
T PRK11652 189 AD------------A-------------------------------------RRTRVLASYRTLLSNRRFNCYLLMLIGT 219 (394)
T ss_pred cc------------c-------------------------------------chhHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 00 0 0000112345667777666544433222
Q ss_pred HHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHH
Q 013431 253 LFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 331 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
... ...+..+.+.++++ .+.+. .+.++......++.++++.+.+++.||.+++.. .......+....+....
T Consensus 220 ~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~ 292 (394)
T PRK11652 220 LAG----IAVFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPG 292 (394)
T ss_pred HHH----HHHHHHhChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 221 12234455666666 56554 677888888888888999999999999873222 22222222222211111
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 401 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 401 (443)
.......+.......+...+.+. ..+....+..|..| ++++++.++.+....+|..+++.+.+.+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 293 WFGVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HhccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 00011222223333333333333 33444466778777 6789999999999999999999988877554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=236.68 Aligned_cols=329 Identities=17% Similarity=0.139 Sum_probs=225.0
Q ss_pred CCcch-hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHH
Q 013431 13 CSRPS-LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLY 90 (443)
Q Consensus 13 ~~~p~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~ 90 (443)
...|. +++++|+|+.+.+++.+.+.+++.++++++|+++||+|||+.+.++.++..++.+++++++ +++.+++.|+++
T Consensus 22 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T TIGR00886 22 PLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFI 101 (366)
T ss_pred HhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34574 8999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC---------ccchHHHH-hhhhHHHHHH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWRYMY-GLSAPLALLM 160 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---------~~~wr~~f-~~~~~~~~~~ 160 (443)
|++.+ ..+...+++.|++|+++|++++++.....++|..+++.+++.+... ..+||+.| +..++...+.
T Consensus 102 g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 180 (366)
T TIGR00886 102 GIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLP 180 (366)
T ss_pred HHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence 99865 4566788999999999999999999987778877777776554431 22799998 4445444443
Q ss_pred H-HHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccC
Q 013431 161 G-IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 239 (443)
Q Consensus 161 ~-~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
. +...+.+|+|+. +++++ .. +.+.. ... .+++.....++.+++
T Consensus 181 ~~~~~~~~~~~~~~-------------~~~~~-~~-----~~~~~-~~~----------------~~~~~~~~~~~~~~~ 224 (366)
T TIGR00886 181 ALLIFFVGADTPPG-------------KPATG-KL-----SFKGA-RWS----------------VGTGALGDQLKVFRD 224 (366)
T ss_pred HHHHHHhcccCCcc-------------cccch-hc-----ccccc-ccc----------------ccchhHHHHHHHHhc
Confidence 3 344455665520 00000 00 00000 000 000001134567777
Q ss_pred CchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhH
Q 013431 240 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 318 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 318 (443)
|+++...+...+..... .....+.|.++++. +.++ .+.+.......+..++++++.+++.||+++|+.+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 299 (366)
T TIGR00886 225 RHTWILALLYSVTFGSF----LGVSSIFAMFFKDQFGLSK-VTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFL 299 (366)
T ss_pred cchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHH
Confidence 77776655444333322 23566777777664 5554 778888888889999999999999999999987776665
Q ss_pred HHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHH
Q 013431 319 GIALSLLLLSAYYKILGG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 387 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 387 (443)
....+..++..... .+ ..........+.....+... +..+....|..| +++|+++|+.+..+++|
T Consensus 300 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 300 GVAMGAFLVVLGLV--SPLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 55554444433211 01 12222222222222233332 344577888877 68999999998887664
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=232.62 Aligned_cols=356 Identities=17% Similarity=0.080 Sum_probs=244.3
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhH-HHHHHHHHHHHHHHHHhcc---chHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL-----GRKR-ELIIAAVLYALGALTTAYA---PGLGVLL 84 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i~~~~~~~~---~~~~~l~ 84 (443)
..|..-++.|.|.+|+|++...... .+..+++|+++||+ |||| ++..+..+.+++..+.++. ++++.++
T Consensus 21 ~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~ 98 (402)
T PRK11902 21 TLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLA 98 (402)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 3577778889999999999777775 59999999999999 8875 7888888888888887776 4577888
Q ss_pred HHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH
Q 013431 85 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 164 (443)
Q Consensus 85 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 164 (443)
+..++.++..+...++..+++.|++|+|||+++.++...+.++|.++++.++..+.+...|||..|++.++..++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 99 GLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999998887753489999999888777665555
Q ss_pred hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhH
Q 013431 165 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 244 (443)
Q Consensus 165 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (443)
+++||+++.. ++ + + +. .++...++++++|+|.++.
T Consensus 179 ~~~~e~~~~~------------~~-----------------~---~-~~------------~~~~~~~~~~l~~~~~~~~ 213 (402)
T PRK11902 179 LWAPEPEVPA------------RP-----------------P---R-SL------------GEAVVGPLRDFFSRRGAWA 213 (402)
T ss_pred HhcCCCcccc------------cc-----------------c---c-hh------------HHHHHHHHHHHHhCcCHHH
Confidence 6666654200 00 0 0 00 0001124667888888877
Q ss_pred HHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHH-HHHHHHHHHHHHhhcccCCceEEehhhHHHHHH
Q 013431 245 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 323 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 323 (443)
..+...+....... ......+.+.++.|.+. .+.++.....+ ++.+++.++.+++.||+++|+.+..+..+..+.
T Consensus 214 ~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~-~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 214 LLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSA-GEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66554444332221 11222334445567665 66777765544 568999999999999999998776555554444
Q ss_pred HHHHHHHHHHhccchhHHHHHHH---HHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013431 324 LLLLSAYYKILGGFPLVAVSALL---LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 400 (443)
.+.+...... .++.+....... +..+.......+....++++.+|.+ ..+..+....++...++.+.|.+.|
T Consensus 290 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~ 364 (402)
T PRK11902 290 NLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVE 364 (402)
T ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333221111 112222222221 1222222223334446666666644 4456666667777777788999999
Q ss_pred hhccchhhhHHHHHHHHHHHHhhhc
Q 013431 401 LLGAENIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 401 ~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
..|+...|...+.+++++..+.+..
T Consensus 365 ~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 365 AYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888877776655443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=231.72 Aligned_cols=341 Identities=16% Similarity=0.100 Sum_probs=241.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchh----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRK----RELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 90 (443)
+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.++..+. .......+++++.+++.|++.
T Consensus 27 l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~ 104 (382)
T PRK11128 27 WSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLF 104 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999984 3333332222 223344568999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCC
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 170 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 170 (443)
|++.+...|...+++.++ +++|+++.+......++|..+||++++++.++. |||..|++.++..++..+..++.||+
T Consensus 105 g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 105 NLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999988888876 456888899999999999999999999998887 99999988776555444444444442
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
++. ++ + +++.++...++++++|+|.++...+..+
T Consensus 182 ~~~--------------------------------~~----~----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 182 MPQ--------------------------------GE----S----------RQQESAGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred CCc--------------------------------cc----c----------ccccccccchHHHHHcChhHHHHHHHHH
Confidence 110 00 0 0000011235778899998887766544
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
+..... .....+.|.+.++.|.+. .+.+.......+..++..++.+++.||+++|+.+..+....++....+...
T Consensus 216 l~~~~~----~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 216 LLQGSH----AAYYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred HHHHHh----HhHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 444332 234456677778877775 677888888888999999999999999999999887777766665554431
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHH-HHHHHHHHHHhhHHHHHhhccchhhh
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGAENIFL 409 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~ 409 (443)
++.+......++...+.... .+....+..+. +++++++..+..+.. ...|..++|.+.|.+.|..|. ..++
T Consensus 291 -----~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~ 362 (382)
T PRK11128 291 -----TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFW 362 (382)
T ss_pred -----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 23333333333333333333 33344566666 556678888888644 567778999999999999886 4555
Q ss_pred HHHHHHHHHH
Q 013431 410 LFAAIAFLAV 419 (443)
Q Consensus 410 ~~~~~~~~~~ 419 (443)
..+++.+++.
T Consensus 363 ~~~~~~~~~~ 372 (382)
T PRK11128 363 VMALVALPAL 372 (382)
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=239.48 Aligned_cols=354 Identities=20% Similarity=0.210 Sum_probs=244.5
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLA 97 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 97 (443)
+.+|.+....+.+.+.++++++++++++++|.+.||++..+.+....+++++..++....+|++.+++.|++.|+.++..
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 55899999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred chhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccC-----CccchHHHHhhhhHHHHHHHH-HHhcCCCCh
Q 013431 98 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-----AVGGWRYMYGLSAPLALLMGI-GMWSLPPSP 171 (443)
Q Consensus 98 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-----~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~ 171 (443)
+|....+++.|+.++||++.++++.++.++|.++|.+++..+.+ ...||||.|++.+++.++..+ ..+++|+.|
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 99999999999999999999999999999999999999988532 123999999999999988765 556789988
Q ss_pred H--HHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHH
Q 013431 172 R--WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 249 (443)
Q Consensus 172 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (443)
. +.. .+.|+... .++.++ .......++.+...+++.+++|..|...++.
T Consensus 232 ~~~~fl-----------~~~ek~~~-~~~~~~-----------------~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~ 282 (495)
T KOG2533|consen 232 SKAWFL-----------TDEEKELV-VERLRE-----------------SPSGGIENKFKWKGFKEALKDPGVWPFSLCY 282 (495)
T ss_pred hhcccc-----------chHHHHHH-HHHHHh-----------------ccCCCcccccCHHHHHHHHhchhHHHHHHHH
Confidence 5 111 11111000 111111 0111111224567789999999999888655
Q ss_pred HHHHHHHHhCchhhHhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc----CCceEEehhhHHHHHHH
Q 013431 250 GLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL----GRRPLLIGGVCGIALSL 324 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~~~~~~~~ 324 (443)
.+... ..+.+.+|+|.++++. +++. .++..+.....++++++.++.|+++||. .+|........+.....
T Consensus 283 ~~~~l----v~~~~~~~lpl~l~~~~~~s~-~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 283 FFLKL----VNYGFSYWLPLYLKSNGGYSE-LQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG 357 (495)
T ss_pred HHHhh----ccccHHHHHHHHHHcCCCcCh-HHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55544 3455889999999993 3544 8899999999999999999999999995 33433333333332222
Q ss_pred -HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccc-cchhHHHHHHHHHHHHHHHHHhhH-HHHHh
Q 013431 325 -LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFS-PLKEL 401 (443)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g-~l~~~ 401 (443)
..+.. ..........++..........+......++....+. +-+..+......+.++.++|.+.- ....+
T Consensus 358 ~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~ 431 (495)
T KOG2533|consen 358 AISLLA------AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR 431 (495)
T ss_pred HHHHHh------hccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence 22211 1111111111222222122222333345555444343 333444444445555555555443 33344
Q ss_pred hccchhhhHH
Q 013431 402 LGAENIFLLF 411 (443)
Q Consensus 402 ~g~~~~~~~~ 411 (443)
+++...|...
T Consensus 432 y~~~~~f~~~ 441 (495)
T KOG2533|consen 432 YGWGAVFYML 441 (495)
T ss_pred hhhhhHHHHH
Confidence 5666666333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=229.65 Aligned_cols=351 Identities=14% Similarity=0.070 Sum_probs=237.1
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hccc-----hHHHHHHHHH
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAP-----GLGVLLVGRL 88 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~-----~~~~l~~~r~ 88 (443)
.+.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++.... .+.+ ....+++.|+
T Consensus 28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T TIGR00882 28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL 107 (396)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3567799999999999999999999999999999999999999988776665544322 1222 2344567789
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc-C
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-L 167 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~ 167 (443)
+.|++.+...+....+..|.. +++++..+......++|..++|.+++.+.+ . +||..|++.++..++..+..+. .
T Consensus 108 ~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 108 YLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred HHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHHHHHHHHHHHHHHHHhC
Confidence 999998888888888777743 334567788888889999999999998755 4 8999999988888776655544 3
Q ss_pred CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHH
Q 013431 168 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 247 (443)
Q Consensus 168 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
||+|+. ++..+ ..+..+++++.++.++++|+|.++...+
T Consensus 184 ~~~~~~----------------~~~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l 222 (396)
T TIGR00882 184 PKAPSS----------------ATVAN-------------------------ALGANASAFSLKLALELFRQRKFWMFVL 222 (396)
T ss_pred CCCchh----------------hhhhc-------------------------ccccccCCCCHHHHHHHHcCCcHHHHHH
Confidence 333210 00000 0000001112234677888888766554
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHhc----CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQSA----GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 323 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 323 (443)
......... .....+.+.++++. +.+. ...+.......+...++....+++.||+++|+.+..+..+.++.
T Consensus 223 ~~~~~~~~~----~~~~~~~~~y~~~~~~~~~~~~-~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~ 297 (396)
T TIGR00882 223 YVVGVACVY----DVFDQQFANFFTSFFATPQQGT-RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVR 297 (396)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 433322222 12333445555443 2222 45677888888888999999999999999999988777766665
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHH-HHHHHHHHHHHHHHhhHHHHHhh
Q 013431 324 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~ 402 (443)
....... ++.+.......+...+. .........+..+..|++.++++.+. .+....+|+.+++.+.|++.|..
T Consensus 298 ~~~~~~~-----~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~ 371 (396)
T TIGR00882 298 IIGSSFA-----TTALEVVILKMLHAFEV-PFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI 371 (396)
T ss_pred HHHHHhc-----CChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 5543321 22333332222222222 11111222455666788888887766 56789999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHhh
Q 013431 403 GAENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 403 g~~~~~~~~~~~~~~~~~~~~ 423 (443)
|++..|.+.+++.++..+...
T Consensus 372 G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 372 GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777766544
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=236.69 Aligned_cols=402 Identities=16% Similarity=0.145 Sum_probs=282.6
Q ss_pred CCCCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHH-
Q 013431 8 ALPSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVG- 86 (443)
Q Consensus 8 ~~~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~- 86 (443)
.....+..++++++++.+.++++|+.++....+.+..|+.+.+.||||.|++.+.|.++..++.++.++++++|++++.
T Consensus 62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~ 141 (509)
T KOG2504|consen 62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTF 141 (509)
T ss_pred hheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344566899999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred HHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc
Q 013431 87 RLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 166 (443)
Q Consensus 87 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 166 (443)
-++.|+|.|..+.....++..+|+ |+|+.+.|+...+.++|..+-|.+..++.+.. |||+.+++.+.+.+-.++....
T Consensus 142 gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~~~~l~~~~~~~~ 219 (509)
T KOG2504|consen 142 GVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFGGISLNVLVAGAL 219 (509)
T ss_pred HHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999998876 88999999999999999999999999999988 9999999988888766554444
Q ss_pred C-CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcc-hhhHHHHHHhccccccccccccch----hhhccCC
Q 013431 167 L-PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLS-ERQIEDTLVSLKSSYTDEKSEGSF----LEVFQGP 240 (443)
Q Consensus 167 ~-~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 240 (443)
+ |.+++.... ++++........+.+....+......+..... .....+...+.++.......+... .++++++
T Consensus 220 ~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~ 298 (509)
T KOG2504|consen 220 LRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP 298 (509)
T ss_pred cCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCc
Confidence 3 433321000 00000000000000000000000000000000 000011111111111111112222 5788888
Q ss_pred chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehh--hH
Q 013431 241 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG--VC 318 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~--~~ 318 (443)
.++.+.+...+..+. +.....++|.+.++.++++ .+.+.+.++.++..++++++.|+++|+...++..... .+
T Consensus 299 ~fl~~~~~~~~~~~g----~~~p~~~l~~~~~~~g~~~-~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll 373 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLG----FNVPFVYLPSYAKSLGLSS-NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLL 373 (509)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCh-hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHH
Confidence 777776555555543 3457788999999888887 8899999999999999999999999998854444433 33
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 319 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
..+++.+...+ ...+..+....++.+.....+..+....+.|+.+.++-..+.|+...+..++..++|++.|.+
T Consensus 374 ~~gl~~~~~p~------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~ 447 (509)
T KOG2504|consen 374 IAGLARLFLPF------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL 447 (509)
T ss_pred HHHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence 33333323222 233444444555555555555555546788999999999999999999999999999999999
Q ss_pred HHhhc-cchhhhHHHHHHHHHHHHhh
Q 013431 399 KELLG-AENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 399 ~~~~g-~~~~~~~~~~~~~~~~~~~~ 423 (443)
.|..| |...|+..+...+++.....
T Consensus 448 ~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 448 YDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred eeccCCeeeehhhcChHHHHHHHHHH
Confidence 99998 77788877777777665433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=253.26 Aligned_cols=342 Identities=15% Similarity=0.025 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH---HHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhh
Q 013431 27 RLFSLALCGSLYGALLGSILVYSIADFLGRKRELII---AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 103 (443)
Q Consensus 27 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 103 (443)
...++..+++.++++++++++|+++||+|||+++.. ..+...+..+.+...+|+++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 447889999999999999999999999999998643 22333333333344589999999999999999999999999
Q ss_pred HhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCC
Q 013431 104 YIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG 183 (443)
Q Consensus 104 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~ 183 (443)
++.|++++++|++++++.+++.++|.++||++++++.... +|++.|+..++..++..+..+++|+++.- + +
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~- 202 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNA------A-P- 202 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCC------C-C-
Confidence 9999999999999999999999999999999999998877 99999955555555555566666664310 0 0
Q ss_pred chhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhh
Q 013431 184 SLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSV 263 (443)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
........ .+.....++.+.+++.++...+...+.++... .+
T Consensus 203 ---------------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 244 (1140)
T PRK06814 203 ---------------------DLKIDRNI-------------IRSTITLLKYAKADKRIWLAILGISWFWLVGA----VV 244 (1140)
T ss_pred ---------------------CCeeccch-------------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH----HH
Confidence 00000000 00011246677788888877766555544432 35
Q ss_pred HhhHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHH-----------
Q 013431 264 LYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY----------- 331 (443)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 331 (443)
..+.|.++++. +.+. ...+++.+..+++.+++.++.+++.|+..+++.+..+.++.++..+.+.+..
T Consensus 245 ~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (1140)
T PRK06814 245 LSQLPLLAKETLGGDE-NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK 323 (1140)
T ss_pred HHHhHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence 56778887774 5544 7899999999999999999999999988877776666555555444333210
Q ss_pred ----HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh-hccch
Q 013431 332 ----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAEN 406 (443)
Q Consensus 332 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~ 406 (443)
.......+...+..++++.+ .....+...+++++..|++.+|+++|+.+++..++..+++.+.|.+.+. .++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~ 402 (1140)
T PRK06814 324 SILVFLSKRHGWRILIDLFGLAAA-GGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPW 402 (1140)
T ss_pred chhhhhcccccHHHHHHHHHHHHH-HHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 00002223233333333333 3333334458889999999999999999999999999999999988753 34444
Q ss_pred hhhHHHHHHHH
Q 013431 407 IFLLFAAIAFL 417 (443)
Q Consensus 407 ~~~~~~~~~~~ 417 (443)
.+++.+.+.++
T Consensus 403 ~~~~~~~~~~~ 413 (1140)
T PRK06814 403 IILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=219.06 Aligned_cols=351 Identities=14% Similarity=0.072 Sum_probs=258.7
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhc
Q 013431 19 VAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM 98 (443)
Q Consensus 19 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 98 (443)
+++.+-+++++|++.++..+.+.+.+++.|.+.||+|+|..+++|++.+..++++.++.+++++++++|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcCccc-chhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHh
Q 013431 99 HGAPLYIAETCPSQ-IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 177 (443)
Q Consensus 99 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~ 177 (443)
++..++++|.+|++ +|++++|+...+.++|.++||++|+.+.+.. |.+.+|++.+++.++-..+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~----- 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE----- 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc-----
Confidence 99999999999875 4799999999999999999999999998887 9999999999999998877766543211
Q ss_pred hhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHH
Q 013431 178 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 257 (443)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (443)
.+.++..+..++++++++|..+..............
T Consensus 252 --------------------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~la 287 (464)
T KOG3764|consen 252 --------------------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLA 287 (464)
T ss_pred --------------------------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHH
Confidence 000123344568889999977755544333332221
Q ss_pred hCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccc
Q 013431 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 337 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (443)
. ..--++.+..+.-..+..+.+.......+...++..+.|.+.||++..+.+.....+..++...........-..
T Consensus 288 f----LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~ 363 (464)
T KOG3764|consen 288 F----LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ 363 (464)
T ss_pred H----hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence 1 112223333333234435888888899999999999999999999965544433333333322221111100011
Q ss_pred hhHHHHHHHHHHHHHhhccccceeeeeecccCcc---ccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHH
Q 013431 338 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 414 (443)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 414 (443)
-+.......+.++.......|.. .+..|.-..+ ..|..+++......++.++||.+.|.+.+..|+.+...+.+..
T Consensus 364 L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~ 442 (464)
T KOG3764|consen 364 LWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGIL 442 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHH
Confidence 22222333333444444444544 3444443444 6789999999999999999999999999999999988888887
Q ss_pred HHHHHHHhhh
Q 013431 415 AFLAVLFIVR 424 (443)
Q Consensus 415 ~~~~~~~~~~ 424 (443)
.++-.-++.+
T Consensus 443 n~iyapvl~l 452 (464)
T KOG3764|consen 443 NLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHH
Confidence 7776654444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=231.19 Aligned_cols=336 Identities=14% Similarity=0.081 Sum_probs=233.4
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hchh-HHHHHHHHHHHHHHHHHhccch------HHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVL 83 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~l 83 (443)
.+.+.+++|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++...++ ...+
T Consensus 23 ~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (437)
T TIGR00792 23 LFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA 102 (437)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 466788999999999999999999999999999999997 7874 4677888888888888877654 4567
Q ss_pred HHHHHHHhhhhhhhchhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHhhhcccC------CccchHHHHhhhhHH
Q 013431 84 LVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLSAPL 156 (443)
Q Consensus 84 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~~~wr~~f~~~~~~ 156 (443)
++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+.. ...+||+.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 77889999998888888888889987 56899999999998888888777665444331 123899999998888
Q ss_pred HHHHHHHH-hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhh
Q 013431 157 ALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLE 235 (443)
Q Consensus 157 ~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (443)
+++..+.. +..+|+++. .+ + ++.++.+..+.+++
T Consensus 183 ~~~~~~~~~~~~~e~~~~----------------------------~~--~---------------~~~~~~~~~~~~~~ 217 (437)
T TIGR00792 183 GVVSLIICFFGTKERYSE----------------------------IP--K---------------NIEKKLSLKQIFKA 217 (437)
T ss_pred HHHHHHHHHcCCEecCCC----------------------------CC--c---------------ccccCCCHHHHHHH
Confidence 87775544 455553210 00 0 00000011234567
Q ss_pred hccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEeh
Q 013431 236 VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 315 (443)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 315 (443)
++++|.++...+...+....... ...+.+++.+.... ++...+.......++.+++.++.+++.||+++|+.+..
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 218 LFKNDQLLILCLAYLFYNLAFNI----KNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHH----HcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 78888877766555444443322 22333444443322 33566677777789999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccC-------ccccchhHHHHHHHHHHHH
Q 013431 316 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSN 388 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~ 388 (443)
+..+.+++.+.+.+.. ++.+.... ..+..+.......+..+++.+|..| ++.+|++.|+.+....++.
T Consensus 293 ~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~ 367 (437)
T TIGR00792 293 GILLMVLGYLIFFFAG----SNLPLILV-LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ 367 (437)
T ss_pred HHHHHHHHHHHHHHcc----hhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence 7766666655544321 12222222 2222222222233445566666654 5668999999999999999
Q ss_pred HHHHHhhHHHHHhhccc
Q 013431 389 AIVTFAFSPLKELLGAE 405 (443)
Q Consensus 389 ~~~~~~~g~l~~~~g~~ 405 (443)
.+++.+.|.+.+..|+.
T Consensus 368 ~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 368 ALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999988763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=207.16 Aligned_cols=347 Identities=20% Similarity=0.187 Sum_probs=266.2
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHH
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRL 88 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~ 88 (443)
..-.|.+++.|++|..|.+++..+++.++.+.+++.|++.+|+|+|+.++.|+.++++++.+.. -..++..++++-+
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lF 112 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALF 112 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999999999999999984 5678999999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC------------------ccchHHHH
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA------------------VGGWRYMY 150 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~------------------~~~wr~~f 150 (443)
+.|.|.+...++.+.++....++++..+.+++.+..+++|.+++|++++.++.+ ...||++|
T Consensus 113 ila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pY 192 (422)
T COG0738 113 ILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPY 192 (422)
T ss_pred HHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999998899999999999999999999999998763 11478888
Q ss_pred hhhhHHHHHHHHHHhc--CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccc
Q 013431 151 GLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 228 (443)
Q Consensus 151 ~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (443)
...+...++..+.... .|+.+. .+++..++
T Consensus 193 l~~~~~lvll~v~~~~~k~p~~~~------------------------------------------------~~~~~~~~ 224 (422)
T COG0738 193 LILAGLLVLLAVLILLSKLPDLQV------------------------------------------------AAPSLGAS 224 (422)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCc------------------------------------------------cccccccc
Confidence 8877776666555443 333211 00011111
Q ss_pred cccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 013431 229 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 308 (443)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 308 (443)
++....+++++|+++...++.+++...... ...|++.++.+....+..++....+..+++.++|++++.++.+|++
T Consensus 225 ~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva----~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~ 300 (422)
T COG0738 225 GSAGLSSLFQNKHLRLGVLAIFLYVGAEVA----IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIK 300 (422)
T ss_pred ccchHHHHHhChHHHHHHHHHHHHHhHHHH----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122578899999999888777777776654 6778888888844434488999999999999999999999999999
Q ss_pred CceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHH
Q 013431 309 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 388 (443)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 388 (443)
..|.+.+...+..+.++...+. .....+....+.+.+.+ ...|..++...+..| ++...+.++ ......|+
T Consensus 301 ~~k~Laf~a~~~ill~~~~~l~------~g~v~~~~l~~ig~F~s-imfPTIfslal~~l~-~~ts~~s~~-l~maivGG 371 (422)
T COG0738 301 PEKYLAFYALIAILLLLAVALI------GGVVALYALFLIGLFNS-IMFPTIFSLALKNLG-EHTSVGSGL-LVMAIVGG 371 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------cChHHHHHHHHHHHHhH-HHHHHHHHHHHhccC-cccccccee-eeeheecc
Confidence 9998877655544444444332 23444444444444444 444555577778878 444444443 34466889
Q ss_pred HHHHHhhHHHHHhhccchhhhHHHHHHHHHH
Q 013431 389 AIVTFAFSPLKELLGAENIFLLFAAIAFLAV 419 (443)
Q Consensus 389 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 419 (443)
++.|.+.|++.|..|....+......|.+..
T Consensus 372 AiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 372 AIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999997777665555555544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=222.45 Aligned_cols=321 Identities=14% Similarity=0.004 Sum_probs=223.0
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHHHHHHHHHHHHHHhcc---chHHH
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYALGALTTAYA---PGLGV 82 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~~ 82 (443)
+...|.+.+|+|+|.+|+|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++. .+.+.
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~ 85 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL 85 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 345788999999999999999766 555555 99999999998 89886 567788888887777776 46667
Q ss_pred HHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccc--------hHHHHhhhh
Q 013431 83 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG--------WRYMYGLSA 154 (443)
Q Consensus 83 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~--------wr~~f~~~~ 154 (443)
+....++.+++.+...++..+++.|++|+|+|+++.++...+.++|.++++.+++.+.+.. + ||..|++.+
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~~wr~~f~i~a 164 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLITLWGYIFFWTA 164 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccHHHHHHHH
Confidence 7888888899999999999999999999999999999999999999999999999887776 5 999999998
Q ss_pred HHHHHHHHHHhc-CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccch
Q 013431 155 PLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 233 (443)
Q Consensus 155 ~~~~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
+..++..+..++ .||+++. + + + ++++ +++.+..+
T Consensus 165 i~~l~~~~~~~~~~~e~~~~--------~--------------------~--~--~~~~-------------~~~~~~~~ 199 (356)
T TIGR00901 165 LLILPGLLVTLFLAKEPQED--------A--------------------S--V--PKPL-------------TQAVLKPI 199 (356)
T ss_pred HHHHHHHHHHHHhccCCCcc--------c--------------------c--c--chhH-------------HHHHHHHH
Confidence 877776655443 4553210 0 0 0 0000 00011234
Q ss_pred hhhccCCc---hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHH-HHHHHHHHHHHHhhcccCC
Q 013431 234 LEVFQGPN---LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAKVDDLGR 309 (443)
Q Consensus 234 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~ 309 (443)
+++++++. .+...+...+... .+.....+.|.++++.|.++ .+.+......+ +..+++.++++++.||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~-~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~ 274 (356)
T TIGR00901 200 REFFQRKNMIQALLLLLLIVLYKL----GDSAATVLTTLFLLDMGFSK-EEIALVAKINGLLGAILGGLIGGIIMQPLNI 274 (356)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCH-HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 56666665 3333332222222 22335567788888877766 66666666555 6788999999999999999
Q ss_pred ceEEehhhHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHH
Q 013431 310 RPLLIGGVCGIALSLLLLSAYYKILGG-----FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 384 (443)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 384 (443)
|+.+..+.++.++....+.+....... ..........++.+.......+...++..|.+|+++||+.+|+.++..
T Consensus 275 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 275 LYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 988877776666555544332111000 122223333333333333344455689999999999999999988765
Q ss_pred H
Q 013431 385 F 385 (443)
Q Consensus 385 ~ 385 (443)
+
T Consensus 355 ~ 355 (356)
T TIGR00901 355 A 355 (356)
T ss_pred h
Confidence 4
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=252.77 Aligned_cols=334 Identities=16% Similarity=0.022 Sum_probs=233.2
Q ss_pred chhhhhhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHH
Q 013431 16 PSLVAQLGSTF--RLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLY 90 (443)
Q Consensus 16 p~i~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~ 90 (443)
+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++.+.++.++..++.. .+++++.++++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL 113 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44555566544 4479999999999999999999999999999999998877666555443 457899999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC--------ccchHHHHhhhhHHH-HHHH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--------VGGWRYMYGLSAPLA-LLMG 161 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~~~wr~~f~~~~~~~-~~~~ 161 (443)
|++.+...++..+++.|++|+++|++++++...+.++|.++|+++++++.+. ..+|++.+.+..+.. ++.+
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL 193 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765 324555544433333 3334
Q ss_pred HHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCc
Q 013431 162 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 241 (443)
Q Consensus 162 ~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (443)
+..+.+||+|+.... + . +.... ...+.....++.+++++.
T Consensus 194 ~~~~~~~~~~~~~~~-----~----~---------------~~~~~----------------~~~~~~~~~~~~l~~~~~ 233 (1146)
T PRK08633 194 IFAYRLPKVPAAAPE-----V----F---------------DKKKY----------------LFPKLLWRNLKLLRSDRV 233 (1146)
T ss_pred HHHhcCcCCCCCCcc-----c----c---------------ccccc----------------ccHHHHHHHHHHHhcCcH
Confidence 455567776531000 0 0 00000 000001123556777777
Q ss_pred hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCch-hHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH
Q 013431 242 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAA-DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 319 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 319 (443)
++...+...+.++... ....+.|.++++ .+.+. . ..+++.....++.+++.++.+++.||.++++.+.++.++
T Consensus 234 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~s~-~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~ 308 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQ----LAQANFPAYAKEVLGLDN-TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALG 308 (1146)
T ss_pred HHHHHHHHHHHHHHHH----HHHHhhHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHH
Confidence 7766554444443322 244556666654 56665 5 788899999999999999999999999998888777766
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 013431 320 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 399 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 399 (443)
.+++.+.+... .+.+..++..++.+.+.+. ..+...+++.+..|++.||+++|+.+++..++..+++.+.+.+.
T Consensus 309 ~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 309 LALSLFLLPTA-----PSLASVLVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555432 1222223333333333333 33344478889999999999999999999999888777666554
Q ss_pred H
Q 013431 400 E 400 (443)
Q Consensus 400 ~ 400 (443)
.
T Consensus 383 ~ 383 (1146)
T PRK08633 383 G 383 (1146)
T ss_pred H
Confidence 3
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=224.88 Aligned_cols=355 Identities=21% Similarity=0.195 Sum_probs=261.8
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRL 88 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~ 88 (443)
+.+-+..+..-|+..++++.++..+...+.++++|.++||++|||+++.+.++.++..+..++ ..+.+.+++.-+
T Consensus 32 a~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~f 111 (524)
T PF05977_consen 32 ALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTF 111 (524)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 345566677888999999999999999999999999999999999999998887766555443 247889999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
+.|++.+...|+..+++.|..|+++...+.++.+...++..++||.++|.++... |-.+.|.+.++..++.+......+
T Consensus 112 l~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 112 LLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF-GAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999988877 888899888876666544444333
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
+.++ .++.+.+ .-.+.-+..++.+.++|..+..++.
T Consensus 191 ~~~~--------------------------------~~~~~~e------------~~~~~l~~G~ryv~~~~~l~~~l~~ 226 (524)
T PF05977_consen 191 PPPP--------------------------------PSSLPRE------------RFFSALREGLRYVRSSPPLRSVLLR 226 (524)
T ss_pred cccc--------------------------------ccccchh------------hhhhhHHHHHHHHhcchHHHHHHHH
Confidence 2110 0000000 0001112234555566665554443
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
..+..+.. ..+...+|.+.++.-..++...|++....+++.++|+++.+++.+|+++++.+..+.+..+++.+.++
T Consensus 227 ~~~~~l~~----~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la 302 (524)
T PF05977_consen 227 SFLFNLFA----SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA 302 (524)
T ss_pred HHHHHHhh----hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh
Confidence 33332221 22444577777664333348889999999999999999999999999998888877777777666665
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 408 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 408 (443)
+. ++.+..... ++..+...........+..++..|++.||++++++++....+..+|..+.|.+.+..|....+
T Consensus 303 l~-----~~~~~~~~~-l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al 376 (524)
T PF05977_consen 303 LS-----PSFWLALIA-LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTAL 376 (524)
T ss_pred cc-----hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 52 223333333 333333333344444577889999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHhh
Q 013431 409 LLFAAIAFLAVLFIV 423 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (443)
.+.++..+++.++..
T Consensus 377 ~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 377 LIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776665555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=221.72 Aligned_cols=395 Identities=12% Similarity=0.071 Sum_probs=240.7
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHhhh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGV-LLVGRLLYGLG 93 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G~~ 93 (443)
..+++++|.+.++.+++.+.+.....+..+++|+++|| +||||++..+.++++++++.++++++... ++++|+++|+|
T Consensus 39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig 118 (489)
T PRK10207 39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG 118 (489)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999999 99999999999999999999999877554 55899999999
Q ss_pred hhhhchhhhhHhhhcCccc--chhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 94 IGLAMHGAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
.|...|...+++.|++|++ +|+++++++..+.++|..+||.+++++.++. |||+.|++.++..++..+.....++..
T Consensus 119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 9999999999999999876 4577999999999999999999999998888 999999986553333333333333221
Q ss_pred HHHHHhhhcCCCchhhHHHHHHH---------HHhhhhcCCCCCCcchhhHHH--HHHhccccccccccccchhhhccCC
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAIS---------ALGKLRRRPPGDKLSERQIED--TLVSLKSSYTDEKSEGSFLEVFQGP 240 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
+ .++.+.+.+..+....... ......+.. +........ ......-..++.+. .+.+|+|
T Consensus 198 ~---~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~f~~~~~~~----~~~~r~r 267 (489)
T PRK10207 198 K---DIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV---EVANLVLIVLSIVVTIIFFREAFKL----DKTGRNK 267 (489)
T ss_pred c---ccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 1 0000000000010000000 000000000 000000000 00000000000000 1344444
Q ss_pred chhHHHHH--HHHHHHHHHhCchhhHhhHHHHHHh-cCCC---CchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceE--
Q 013431 241 NLKAFIIG--GGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL-- 312 (443)
Q Consensus 241 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-- 312 (443)
.+....+. ..+.+..+. ...+..+.+.++ .+.. -......+.....+..++.+++.+++.||.++|+.
T Consensus 268 ~~~~~~l~~~~~~f~~~~~----q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~ 343 (489)
T PRK10207 268 MFVAFVLMLEAVVFYILYA----QMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDL 343 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 33322211 112222222 232344444443 2211 11123445555556677888888999999998874
Q ss_pred -----EehhhHHHHHHHHHHHHHH--HH--hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHH
Q 013431 313 -----LIGGVCGIALSLLLLSAYY--KI--LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 383 (443)
Q Consensus 313 -----~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 383 (443)
+..++++.+++++.+.... .. ....+..+++...++.+.......+....++.+..|++.++.++|+.+..
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5566666666654432111 10 11223333444445555555556666668888899999999999999999
Q ss_pred HHHHHHHHHHhhHHHHH----------hhccchhhhHHHHHHHHHHHHhhhc
Q 013431 384 NFGSNAIVTFAFSPLKE----------LLGAENIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 384 ~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
.++|+.++..+...... ...+.+.|...++..+++.++++..
T Consensus 424 ~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 424 QAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877754421 1123455666666666555544443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=204.94 Aligned_cols=337 Identities=18% Similarity=0.127 Sum_probs=212.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhh
Q 013431 24 STFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 103 (443)
Q Consensus 24 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 103 (443)
.+..-.|.+.|.|.+.+.+.++.+|.++||+|||+++.+|+...++...+.+.+.|+..+.++|++.|+..| ......+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence 345568999999999999999999999999999999999999999999999999999777777999999987 6677889
Q ss_pred HhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccC---CccchHHHHhh----hhHHHHH-HHHHHhcCCCChHHHH
Q 013431 104 YIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN---AVGGWRYMYGL----SAPLALL-MGIGMWSLPPSPRWLL 175 (443)
Q Consensus 104 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~---~~~~wr~~f~~----~~~~~~~-~~~~~~~~~es~~~~~ 175 (443)
+++|.+++|+|+++++..++.+++|.++||.+|+++.. ..+ +.+|.. ..+.... .....+++||+-+.-.
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 99999999999999999999999999999999999887 221 222222 2222222 3345577899843100
Q ss_pred HhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhH---HHHHHHHH
Q 013431 176 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA---FIIGGGLV 252 (443)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 252 (443)
+ . +.+....++ .+...+..+.. ...-...+||+.... ..-...+.
T Consensus 222 ~---~---~~~~~~~~~---------------------~~~~~~~~~~~-----~~~~v~~lrn~p~~~~i~~~~i~~l~ 269 (451)
T KOG2615|consen 222 R---N---DEHSTLQEA---------------------ADDRLALLKFA-----RIFKVAALRNPPLLDFISVLRIFGLH 269 (451)
T ss_pred h---c---ccccchhhh---------------------hhhhhhhcchh-----hhhhhhhhcCccccchHHHHHHHHHH
Confidence 0 0 000000000 00000000000 000111233332221 11111122
Q ss_pred HHHHHhCchhhHhhHHHHH-HhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC--CceEEehhhHHHHHHHHHHHH
Q 013431 253 LFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGGVCGIALSLLLLSA 329 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~ 329 (443)
.+.+...+..+.++.+.+. ...++++ .+.|.+....++.+.+......+..||.+ .+..+.....++.-..+++..
T Consensus 270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss-~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~ 348 (451)
T KOG2615|consen 270 YFLYLELFSGLENTVLFLTHGRFGYSS-MQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL 348 (451)
T ss_pred HHHHHHHHHHHHhhHHHhhcCccCCCh-hhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 2222222222333333332 4466666 78888888888888887777777777765 233333333332222222221
Q ss_pred HHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 013431 330 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 402 (443)
...+........+....... ..+-...+.....|+++||+..|+..+.+.++.++||.+.|.+..+.
T Consensus 349 -----~~~~~~l~~~s~l~sf~~A~-~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 349 -----ARTPVVLYLGSTLKSFSTAS-VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred -----cccchhhhHHHHHHHHHHHH-hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 12233333333333333333 33333477888899999999999999999999999999998876643
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=194.35 Aligned_cols=344 Identities=22% Similarity=0.193 Sum_probs=263.5
Q ss_pred CCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 13 CSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 13 ~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
.-.+++++|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.
T Consensus 33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~ 111 (395)
T COG2807 33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGA 111 (395)
T ss_pred hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Confidence 34789999999999999999999999999999999999999999999999999999999999887 88899999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChH
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 172 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 172 (443)
|.+......+.++.+.|| |+-+..++++.+..++|..+++.+...+.++..+||....+-+.++++.++.++.- ..|
T Consensus 112 gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq--~~r 188 (395)
T COG2807 112 GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ--ALR 188 (395)
T ss_pred hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh--ccc
Confidence 999999999999999998 66799999999999999999999999888877689999999999988877766532 111
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHH
Q 013431 173 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 252 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (443)
. +..+.+.+..+...++|+|.-|.+.+...+.
T Consensus 189 ~------------------------------------------------~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlq 220 (395)
T COG2807 189 E------------------------------------------------QAASIATKLVSVRKVWRSPLAWQVTLFMGLQ 220 (395)
T ss_pred c------------------------------------------------cccccccccccccccccCchhHHHHHHHHhh
Confidence 0 0001222233445689999999888777666
Q ss_pred HHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCC-ceEEehhhHHHHHHHHHHHHHH
Q 013431 253 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYY 331 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
.+.+ +....|+|.++.|.|.++ ++++.+.+...+..++.++....+.+|.+. |+.......++.++.+.+.+..
T Consensus 221 S~~~----Y~~~~WLP~ili~~G~sa-~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P 295 (395)
T COG2807 221 SLLY----YIVIGWLPAILIDRGLSA-AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP 295 (395)
T ss_pred HHHH----HHHHHHHHHHHHHcCCCH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 6655 448889999999999998 899999999999999999999999997654 4444444455555555554321
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecc-cCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhh
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFL 409 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 409 (443)
....+.+ .++++.+.+ ...++....+.+. -.++..+.-.|+.+.++++-.+.+|.++|.+.|..| |+..+.
T Consensus 296 ---~~~~~lw---~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~ 368 (395)
T COG2807 296 ---GQLPILW---ALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV 368 (395)
T ss_pred ---hhHHHHH---HHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHH
Confidence 1222222 122222222 2233333444443 345667778899999999999999999999999988 444444
Q ss_pred HHHHHHHHHHH
Q 013431 410 LFAAIAFLAVL 420 (443)
Q Consensus 410 ~~~~~~~~~~~ 420 (443)
..+...++..+
T Consensus 369 ~l~~~~i~m~i 379 (395)
T COG2807 369 LLALATLLMLI 379 (395)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=216.55 Aligned_cols=396 Identities=13% Similarity=0.050 Sum_probs=247.4
Q ss_pred hhh--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhh
Q 013431 19 VAQ--LGSTFRLFSLALCGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 19 ~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 95 (443)
.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++..+.+++.++.+++++++.++++|++.|++.|
T Consensus 38 ~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g 117 (475)
T TIGR00924 38 VQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSG 117 (475)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccc
Confidence 444 89999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhchhhhhHhhhcCcccc---hhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChH
Q 013431 96 LAMHGAPLYIAETCPSQI---RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 172 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 172 (443)
...|...++++|++|+++ |+++.++...+.++|..+||.+++++.+.. +||+.|++.++..++..+..++.++..+
T Consensus 118 ~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 118 LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 999999999999998754 888999999999999999999999988877 8999999987655554444433332110
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHH-----------hhhhcCCCCCCcchhhHHHH---HHhccccccccccccchhhhcc
Q 013431 173 WLLLRAVQGKGSLQEYKEQAISAL-----------GKLRRRPPGDKLSERQIEDT---LVSLKSSYTDEKSEGSFLEVFQ 238 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
+.+.+++...+++.+...... ......+. . ........ ...........++ ...+.-|
T Consensus 197 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 268 (475)
T TIGR00924 197 ---DIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV-V--IANILLMTVTLAVIIFFFRLAFKP--RLDAVAR 268 (475)
T ss_pred ---cCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-H--HHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHH
Confidence 000000000000000000000 00000000 0 00000000 0000000000000 0011111
Q ss_pred CC--chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhc-CCC---CchhHHHHHHHHHHHHHHHHHHHHHhhcccCC---
Q 013431 239 GP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGR--- 309 (443)
Q Consensus 239 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--- 309 (443)
++ ....+.+...+.+..+ .......+.+.++. +.+ -....+.+.+...+..++..++..++-.|.+|
T Consensus 269 ~~~~~~l~l~~~~~~~~~~~----~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~ 344 (475)
T TIGR00924 269 NKMYAYIVLFLEAVVFWVLY----AQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK 344 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 1122222222222222 22333344444332 111 11236677778888877777765543333333
Q ss_pred --ceEE--ehhhHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHH
Q 013431 310 --RPLL--IGGVCGIALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 382 (443)
Q Consensus 310 --~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 382 (443)
+... .++.++.++++..+.+.....+ ..+..+++...++.+.......|..+++..+..|++.||+++|+...
T Consensus 345 ~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l 424 (475)
T TIGR00924 345 DPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFL 424 (475)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222 4566666666655543211111 23445555566666666677777888999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhccc
Q 013431 383 TNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP 427 (443)
Q Consensus 383 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 427 (443)
...+|..+++.+.....+..++...+...++++++..++.++..|
T Consensus 425 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 425 AQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887777667777777777777666665554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=210.14 Aligned_cols=352 Identities=15% Similarity=0.020 Sum_probs=235.0
Q ss_pred CcchhhhhhcchhhHHHHH--HHHHHHHHHHHHHHHH-HHHhhhchhHHHHHHHHH-HHHHHHHHh---ccch-HHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLA--LCGSLYGALLGSILVY-SIADFLGRKRELIIAAVL-YALGALTTA---YAPG-LGVLLV 85 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~-~~i~~~~~~---~~~~-~~~l~~ 85 (443)
..|.+.+|.|.|.+++|++ .+.+.+...+.+++++ +..||+||||..++...+ .+......+ ..++ ..+++.
T Consensus 23 ~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (390)
T TIGR02718 23 ALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVG 102 (390)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 4688889999999999997 4677888888888884 479999999987555533 221222222 2222 334455
Q ss_pred HHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh
Q 013431 86 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 86 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 165 (443)
.-++.++..+...+...++..|..++++++...+....+..+|..+|+...+++.+.. |||..|++.++..++..+..+
T Consensus 103 ~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-gw~~~f~~~a~l~~~~~~~~~ 181 (390)
T TIGR02718 103 LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-GQRPAFLLVACVPLASLVCVL 181 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHH
Confidence 5666777788888888989999999888899999999999999999999888888877 999999999988877666555
Q ss_pred cCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHH
Q 013431 166 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 245 (443)
Q Consensus 166 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (443)
+++|+++. + ++ +++++..++++.+|+|..+..
T Consensus 182 ~~~~~~~~----------------------------~---~~-----------------~~~~~~~~~~~~l~~~~~~~~ 213 (390)
T TIGR02718 182 WLKDRAVA----------------------------S---PE-----------------APLARRASLFRFFRRPLAWSL 213 (390)
T ss_pred HcCCCCcC----------------------------c---cc-----------------cchhhHHHHHHHHcCcCHHHH
Confidence 55443210 0 00 000011236678888887766
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHH-HHHHHHHHHHHhhcccCCceEEehhhHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 324 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 324 (443)
.....+...... ....+.+.++++.|.+. ++.+......+. ..+++.++.|++.||+++|+.+..+..+.++..
T Consensus 214 ~~~~~l~~~~~~----~~~~~~~~~l~~~G~s~-~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 214 LALALLSAMTAV----SGFGLSKLYLVDAGWPL-EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHH----HHHHHhhHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 654444443332 24446677788888876 777777776654 667778999999999999998877665543332
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHH-HHHhhccccceeeeeecccCc-cccchhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYV-GCYQISFGPISWLMVSEIFPL-RTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 402 (443)
......................... ...+.... .......+..++ +.+++.+++.+...++|..++|.+.|.+.|..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~ 367 (390)
T TIGR02718 289 LLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF 367 (390)
T ss_pred HHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111100011111111111211 11222222 222344444554 88999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHH
Q 013431 403 GAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 403 g~~~~~~~~~~~~~~~~~ 420 (443)
|+...|...+++.+++..
T Consensus 368 G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 368 GYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 988888877766666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=211.44 Aligned_cols=362 Identities=15% Similarity=0.142 Sum_probs=235.2
Q ss_pred CCCCCCcchhhhhhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 013431 9 LPSHCSRPSLVAQLGSTFRL-FSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGR 87 (443)
Q Consensus 9 ~~~~~~~p~i~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 87 (443)
.+.....|.+.+|+|+|++| .|.+.+.++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R 122 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME 122 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556689999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhh---hhHHHHHHHHHH
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGL---SAPLALLMGIGM 164 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~---~~~~~~~~~~~~ 164 (443)
++.|++.|... +...++.+|+|+++|+++.++..++..+|.+++++++++ +... |||+-+.. ......+.+++.
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~-gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL-GWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999999999 4455 89875443 333334455566
Q ss_pred hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhH
Q 013431 165 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 244 (443)
Q Consensus 165 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (443)
+++|..+|-+.-++.+.+ +.+.+ .......+.+. .+.. +.. +......-..-...+++..+|+.+..
T Consensus 200 ~~LP~~~~sl~f~~~~~~-----~~~~~----~~~~~~~~~~~-~~~~-~~~--~~~~~~~~~~l~~~~~~~y~n~~vl~ 266 (511)
T TIGR00806 200 LFLKRPKRSLFFNRLEDV-----RGALP----CELDQMVPGPG-GKLE-DYL--GTCRDSFLVRMLSELVTIYRNPQLLL 266 (511)
T ss_pred HhCCCCchhhhhcccccc-----ccccc----cccccCCCCCc-cccc-hhh--hhhhhHHHHHHHHHHHHHhcCcchhh
Confidence 778855543222110000 00000 00000000000 0000 000 00000000111234555667775544
Q ss_pred HHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHH
Q 013431 245 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 324 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 324 (443)
.. +.+....+++.-+..|...+.++...+.+...|..-.+..+.+.+..+..|++-.+..+-..+.++.+...-+.
T Consensus 267 WS----lWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~g 342 (511)
T TIGR00806 267 WS----LWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAG 342 (511)
T ss_pred hh----HHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHH
Confidence 43 33444444555577777777776644332356677777778888888889988554433222333322222222
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHh
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 394 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 394 (443)
+++... ..++.+.......++...+.+... +...-+++....+..|...|++++...+-..+-..+
T Consensus 343 ll~~m~---~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 343 LVFWMS---QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred Hhhhhh---cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 222211 124556666666666666665443 333445555566777999999888776655554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=229.90 Aligned_cols=363 Identities=17% Similarity=0.160 Sum_probs=250.3
Q ss_pred CCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc------------
Q 013431 11 SHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP------------ 78 (443)
Q Consensus 11 ~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~------------ 78 (443)
.+...|.++++|+++..+.|++.+.+.++++++.++.|+++||+||||++.++.++++++++++++.+
T Consensus 52 ~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~ 131 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTV 131 (633)
T ss_pred HHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---------------------------------------hHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHH
Q 013431 79 ---------------------------------------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS 119 (443)
Q Consensus 79 ---------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 119 (443)
.+..++++|+++|+|.+..++...+++.|++|+++|+++++
T Consensus 132 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~ 211 (633)
T TIGR00805 132 SSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIG 211 (633)
T ss_pred cccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHH
Confidence 24577899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcc---------------------chHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhh
Q 013431 120 LKELFIVLGILLGYFVGSFQINAVG---------------------GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 178 (443)
Q Consensus 120 ~~~~~~~~G~~~g~~l~~~l~~~~~---------------------~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~ 178 (443)
++..+..+|..+|+++++++.+.+. .||..|++.+++.++..+.++++|++.+.
T Consensus 212 i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~----- 286 (633)
T TIGR00805 212 ILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPK----- 286 (633)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-----
Confidence 9999999999999999998765321 37778888888888776666667664310
Q ss_pred hcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHHh
Q 013431 179 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 258 (443)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (443)
.+++ .+.+..++. ...+.++..+ .. .....++.....++++++|.++...+...+.....
T Consensus 287 ~~~~----~~~~~~~~~--~~~~~~~~~~---~~---------~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~-- 346 (633)
T TIGR00805 287 EGKR----VNVDVHETE--KLEKSEDKSR---KK---------NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAF-- 346 (633)
T ss_pred cccc----cchhhhhhh--cccccccccc---hh---------hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH--
Confidence 0000 000000000 0000000000 00 00000111234678899998877776555555444
Q ss_pred CchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHH-HHHHHHHHHHHhhcccCC--ceEEehhhHHHHHHHHHHHH-HH--
Q 013431 259 GQPSVLYYAGPILQS-AGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR--RPLLIGGVCGIALSLLLLSA-YY-- 331 (443)
Q Consensus 259 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~-~~-- 331 (443)
..+..|+|.++++ .+.+ +.+++++.....+ +.+++.+++|++.||++. |+.+..+.....++.+.... +.
T Consensus 347 --~~~~~~lP~yl~~~~g~s-~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (633)
T TIGR00805 347 --NGYITFLPKYLENQYGIS-SAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIG 423 (633)
T ss_pred --HHHHHHHHHHHHHHcCCc-HHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence 3477789999886 4554 4778877776665 568999999999999984 45555555544444333220 00
Q ss_pred ----------------------H-H-h------c------------------------------c---------------
Q 013431 332 ----------------------K-I-L------G------------------------------G--------------- 336 (443)
Q Consensus 332 ----------------------~-~-~------~------------------------------~--------------- 336 (443)
. . + . .
T Consensus 424 C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~ 503 (633)
T TIGR00805 424 CESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNS 503 (633)
T ss_pred CCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCC
Confidence 0 0 0 0 0
Q ss_pred ------------c-hhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHH-HHHHHHHHHHhhHHHHHhh
Q 013431 337 ------------F-PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 337 ------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~ 402 (443)
. ....++..++..........|.. ..+-+.+|+++|+.+.|+..++ +-+|.+.+|.++|.++|..
T Consensus 504 ~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s 582 (633)
T TIGR00805 504 SAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS 582 (633)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence 0 01111222222223333444555 5666788999999999998876 6678899999999999853
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=205.30 Aligned_cols=404 Identities=14% Similarity=0.063 Sum_probs=252.5
Q ss_pred CCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc------chHHHHH
Q 013431 11 SHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------PGLGVLL 84 (443)
Q Consensus 11 ~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~l~ 84 (443)
.+...|++++++|+|.+|++++.+.. .....++++.|+++||+|||+++.++.+++.+++++++++ ++++.++
T Consensus 46 fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 46 FNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 34557899999999999999998874 4556788899999999999999999999999999999997 6899999
Q ss_pred HHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH
Q 013431 85 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 164 (443)
Q Consensus 85 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 164 (443)
+.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|..+.+.+...+.. . +|+..|++.++++++..++.
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~-~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D-NTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 789999999999999999764444443333 2 78888888888777765544
Q ss_pred h-c--CCCChHHHHHh----hhcCC--Cchhh----------HH---------------------------HHHHH---H
Q 013431 165 W-S--LPPSPRWLLLR----AVQGK--GSLQE----------YK---------------------------EQAIS---A 195 (443)
Q Consensus 165 ~-~--~~es~~~~~~~----~~~~~--~~~~~----------~~---------------------------~~~~~---~ 195 (443)
+ + .||.+++...+ +++++ ...++ +. +.... .
T Consensus 202 ~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~ 281 (591)
T PTZ00207 202 IVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAV 281 (591)
T ss_pred HhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3 3 34445443211 00000 00000 00 00000 0
Q ss_pred Hhh---------------hhcCCCC-CCcchh-h-HH--HHHHhccc-----c-c-cccccccchhhhccCCchhHHHHH
Q 013431 196 LGK---------------LRRRPPG-DKLSER-Q-IE--DTLVSLKS-----S-Y-TDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 196 ~~~---------------~~~~~~~-~~~~~~-~-~~--~~~~~~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
... ....++. ++.++. + .+ ....+.+. + + ...+...++++.+++..+|.+++.
T Consensus 282 v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~ 361 (591)
T PTZ00207 282 TVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWS 361 (591)
T ss_pred HHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHH
Confidence 000 0000000 000000 0 00 00000000 0 0 001122378888889999988865
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhc-CCCCchh-HHHHHHHHHHHHHHHHHHHHHhhcccCCce----EE-ehhhHH--
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSA-GFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRP----LL-IGGVCG-- 319 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~-~~~~~~-- 319 (443)
.++..... ......+..+.+.. |...+.+ ...+.++.++.+.+|++..|.+.....+|+ .. .+.+.+
T Consensus 362 ~~cg~g~g----l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~ 437 (591)
T PTZ00207 362 IFCCVGAH----FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPS 437 (591)
T ss_pred HHHhhCch----heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 55544433 33566777777887 6523232 223778889999999999998873322222 21 111111
Q ss_pred -HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHH-HHhhHH
Q 013431 320 -IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV-TFAFSP 397 (443)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~-~~~~g~ 397 (443)
+.++.+++... .......+...+.+.+.+..+. +....++|+|. ++-|+-+-+.....-+|+.+. ..+.|.
T Consensus 438 ~~~~~~lll~~~-----~p~~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 438 VCIITMLTLFLT-----LPKAALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred HHHHHHHHHHHH-----CCccHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 22222222221 1113344444454555555544 44478899999 888888777777777777766 457788
Q ss_pred HHHhhc-------------cchhhhHHHHHHHHHHHHhhhccccC
Q 013431 398 LKELLG-------------AENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 398 l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
++|+-. ++.+|++++++++++.+....+..++
T Consensus 511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 887531 56789999999988888766554433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=189.62 Aligned_cols=359 Identities=19% Similarity=0.169 Sum_probs=249.8
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLG-RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
.|..-++.|.|..|+|.+.+...+...++++++|+++||++ +||++.+..++.++........++++.+++..++..+.
T Consensus 25 ~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~ 104 (400)
T PF03825_consen 25 LPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFF 104 (400)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999986 67888888888888777778889999999999888988
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHh-hhcccCCc--cchHHHHhhhhHHHHHHHHHHhcCCCC
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-GSFQINAV--GGWRYMYGLSAPLALLMGIGMWSLPPS 170 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l-~~~l~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~es 170 (443)
.....|...++..+... ++++-.|-.-...++|.+++... +..+.... .+....+++.+...++.....+.+|+.
T Consensus 105 ~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~ 182 (400)
T PF03825_consen 105 FSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKT 182 (400)
T ss_pred HccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88889999998888775 34445566666667776666433 12222211 123345666666665555556667876
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
|+. + ..++..++....+..+++|+|++....+..+
T Consensus 183 ~~~---~------------------------------------------~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~ 217 (400)
T PF03825_consen 183 PPK---R------------------------------------------SAKESVKKLLGLDALKLLKNPRFLVFLLAAF 217 (400)
T ss_pred ccc---c------------------------------------------ccCCCcccccchHHHHHhcCccHHHHHHHHH
Confidence 520 0 0000011112234457899998887776665
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
+...... ....|.+.++++.|..+....+...+...+.+++.-...+++.+|+|.++++.++....++-..++...
T Consensus 218 l~~~~~~----~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 218 LIGISHA----AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred HHHHHHH----HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554443 366778888999884333667777788889999999999999999999999999888888887777653
Q ss_pred HHHhccchhHHHHHHH----HHHHHHhhccccceeeeeecccCccccchhHHHHHHH-HHHHHHHHHHhhHHHHHhhccc
Q 013431 331 YKILGGFPLVAVSALL----LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGAE 405 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~ 405 (443)
. ++.+....... +.+..++.. ......++.+..|++.|+++.++++.. ..+|..++..+.|++.|+.|.+
T Consensus 294 ~----~~~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 294 S----DPWPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred c----CCcHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 1 12222222221 123333333 334447899999999999999998876 6789999999999999998865
Q ss_pred hh------hhHHHHHHHHHHHHhhhccccC
Q 013431 406 NI------FLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 406 ~~------~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
.. +.+.+++.++..++.+++.||+
T Consensus 369 ~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 369 GMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 43 3444444444444455544544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=200.75 Aligned_cols=334 Identities=13% Similarity=0.029 Sum_probs=218.9
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hch-hHHHHHHHHHHHHHHHHHhccch------HHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADF----LGR-KRELIIAAVLYALGALTTAYAPG------LGVL 83 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~l 83 (443)
.+.+.+++|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+....+++..+....++ ...+
T Consensus 33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 456778899999999999999999999999999999998 787 45666777777777766555443 4566
Q ss_pred HHHHHHHhhhhhhhchhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHhhhcccC------CccchHHHHhhhhHH
Q 013431 84 LVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLSAPL 156 (443)
Q Consensus 84 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~~~wr~~f~~~~~~ 156 (443)
++...+.+.+.........++.+|+. +++||.+..++...+..+|..+++.+...+.. ...+|+..+.+.+++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66777777777777777889999988 56889998888888888887777654433221 112788888888877
Q ss_pred HHHHHHHHhc-CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhh
Q 013431 157 ALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLE 235 (443)
Q Consensus 157 ~~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (443)
+++..+..++ .+|.++ ++ +.++.+...++++
T Consensus 193 ~~v~~~~~~~~~~e~~~------------------------------~~------------------~~~~~~~~~~~~~ 224 (444)
T PRK09669 193 GVVLFFCCFFMTKERYT------------------------------PE------------------VDNSSSVWKDLKL 224 (444)
T ss_pred HHHHHHHHhCCeEEecC------------------------------CC------------------CcCCCCHHHHHHH
Confidence 7666554433 333110 00 0001112235677
Q ss_pred hccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEeh
Q 013431 236 VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 315 (443)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 315 (443)
++|||.++.+.....+....... .....+++.+.. ...++..+.......+..+++.++.+++.||+|+|+....
T Consensus 225 ~~~n~~~~~l~~~~~~~~~~~~~----~~~~~~y~~~~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~ 299 (444)
T PRK09669 225 LLGNSQWRIMFIFNVVLLTAVVT----RGGATLYYVNYV-LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW 299 (444)
T ss_pred HhCCchHHHHHHHHHHHHHHHHH----Hhhhhheeeeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 88999888776554444333221 112222222222 2222344455556667788888999999999999998877
Q ss_pred hhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccC-------ccccchhHHHHHHHHHHHH
Q 013431 316 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSN 388 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~ 388 (443)
+..+..+....+... ..++.+... ...+..+.......+..+++.+|..+ ++..|...|..+.+..+|.
T Consensus 300 ~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~ 375 (444)
T PRK09669 300 TIVAFVILSALIFFI---PPSNVWLIF-ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL 375 (444)
T ss_pred HHHHHHHHHHHHHHh---CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence 665544333322221 112222223 23333333334445666788888764 3345667888899999999
Q ss_pred HHHHHhhHHHHHhhccc
Q 013431 389 AIVTFAFSPLKELLGAE 405 (443)
Q Consensus 389 ~~~~~~~g~l~~~~g~~ 405 (443)
++++.+.|.+.+..|+.
T Consensus 376 alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 376 AIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999988873
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=202.41 Aligned_cols=397 Identities=14% Similarity=0.105 Sum_probs=224.0
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHhhh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLG 93 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~ 93 (443)
+.+.+++|.+.++.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++++ +.+.+.++|+++|++
T Consensus 46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig 125 (500)
T PRK09584 46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG 125 (500)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45668899999999999988887777777899999999 5999999999999999999998874 566778899999999
Q ss_pred hhhhchhhhhHhhhcCcccc--hhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 94 IGLAMHGAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
.|...+...+++.|++|+++ |..+++++..+.++|..+||.+++++.+.. |||+.|++.++..++..+..++..
T Consensus 126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~~~~--- 201 (500)
T PRK09584 126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFAFCQ--- 201 (500)
T ss_pred hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHhH---
Confidence 99999999999999998643 456889999999999999999999998877 999999998765554433322211
Q ss_pred HHHHHhhhcCCCchhhHHHHHHH---H--H---hhhhcCCCCCCcchhhHHHH-HHhccccccccccccchhhhccCCch
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAIS---A--L---GKLRRRPPGDKLSERQIEDT-LVSLKSSYTDEKSEGSFLEVFQGPNL 242 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~---~--~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
+++..++++.+.+..+....... . + ......++ + ......... ............ ...+.-++|..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 276 (500)
T PRK09584 202 RWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-E-IARMALGVVALGIVVIFGKEAF---AMKGAARRKMI 276 (500)
T ss_pred HHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc-h-HHHHHHHHHHHHHHHHHHHHHh---hcCHHHHHHHH
Confidence 11110000000000000000000 0 0 00000000 0 000000000 000000000000 00001111111
Q ss_pred hHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cC---CCCchhHHHHHHHHHHHHHHHHHHH----HHhhcccCCceEEe
Q 013431 243 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AG---FSAAADATRVSVVIGVFKLVMTWIA----VAKVDDLGRRPLLI 314 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~~~~~~~~ 314 (443)
.... .++....++..+.-...++..+..+ .. ..-....+.......+..++..++. +++.||.+..+.+.
T Consensus 277 ~~~~--~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~ 354 (500)
T PRK09584 277 VAFI--LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFA 354 (500)
T ss_pred HHHH--HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHH
Confidence 1111 1111111111111111222211111 11 1111235566666666666666666 44444444445566
Q ss_pred hhhHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHH
Q 013431 315 GGVCGIALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 391 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 391 (443)
+++++.++++..+.......+ ..+..+.+...++.+.......|...+++.+..|++.||+++|+......+|..++
T Consensus 355 ~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 355 IGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA 434 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777655332111 11233455555556666667777777889999999999999998776665666555
Q ss_pred HHhhHHHH----------HhhccchhhhHHHHHHHHHHHHhh
Q 013431 392 TFAFSPLK----------ELLGAENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 392 ~~~~g~l~----------~~~g~~~~~~~~~~~~~~~~~~~~ 423 (443)
..+.+... ...++...|...++.+++..++.+
T Consensus 435 g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 435 GYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55543211 111355667666666554444333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=188.76 Aligned_cols=366 Identities=16% Similarity=0.141 Sum_probs=226.5
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.|.+..|+|-+ ....|+.+.+.++.+++.++.|.++|.||||.+++.+.++..+|++.++-++|...++++..+.|+|.
T Consensus 67 l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga 145 (599)
T PF06609_consen 67 LPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA 145 (599)
T ss_pred HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh
Confidence 57788898875 56789999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH--hcCCCChH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM--WSLPPSPR 172 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~--~~~~es~~ 172 (443)
|.... ....++|..|.|+|.....+...........++.++..+..+. +|||.|++..+...+.++.. ++.|++.+
T Consensus 146 G~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~ 223 (599)
T PF06609_consen 146 GVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWIFYIFIIWSGIALVLIFFFYFPPPRA 223 (599)
T ss_pred HHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 76654 5566899999999988887777666666667788877766555 99999999988777665433 33444321
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHhhh----------------h-cCC-CCCCcchhhHHHHHHh--------ccccccc
Q 013431 173 WLLLRAVQGKGSLQEYKEQAISALGKL----------------R-RRP-PGDKLSERQIEDTLVS--------LKSSYTD 226 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~-~~~~~~~~~~~~~~~~--------~~~~~~~ 226 (443)
+.+.+ +.. + .+..+.++.+ . ..+ ...+.+..-....... .-+....
T Consensus 224 --~~~~~--~~s---~-~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~ 295 (599)
T PF06609_consen 224 --QLHGR--KLS---K-REQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGA 295 (599)
T ss_pred --hhccc--cCc---H-HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhcc
Confidence 11100 000 0 1111112111 1 111 1122221111100000 0000011
Q ss_pred cccccchhhhccCCc-hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCc---hhHHHHHHHHHHHHHHHHHHHHH
Q 013431 227 EKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAA---ADATRVSVVIGVFKLVMTWIAVA 302 (443)
Q Consensus 227 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~ 302 (443)
.+++.--.+++|+++ +....+..++....+ .....+.|........+++ ...++.....+.+..++.++.+.
T Consensus 296 ~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~----~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~ 371 (599)
T PF06609_consen 296 PKDPLFPHRLFKDRRGFAALLVISFISGMNF----FSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGL 371 (599)
T ss_pred CCCCcCCHHHhccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHH
Confidence 122223345777643 333222222222222 2343444544443322221 24667778888888999999999
Q ss_pred hhcccCCceEEe-hhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHH
Q 013431 303 KVDDLGRRPLLI-GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 381 (443)
Q Consensus 303 l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 381 (443)
+..+++|-|..+ .+...+.++...+.... .++....+....+...+.+....+. ....+-..|+++-|++.|+..
T Consensus 372 l~~~ir~~Kw~li~~~~~~ta~~Gama~~~---~~n~~~~i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~ 447 (599)
T PF06609_consen 372 LFSKIRHIKWQLIFGSVLMTAFCGAMAAVR---PDNKNAAIAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTG 447 (599)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHcc---CCCcchHHHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHH
Confidence 998888766554 44444444333333221 1222222333333333333333332 355666789999999999999
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 013431 382 LTNFGSNAIVTFAFSPLK 399 (443)
Q Consensus 382 ~~~~~g~~~~~~~~g~l~ 399 (443)
+++.+|+.++..++..+.
T Consensus 448 s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 448 SIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 999999999998886554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=185.38 Aligned_cols=375 Identities=16% Similarity=0.183 Sum_probs=243.7
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHHH-HHHHHHHHHHHHhccchHH--------
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIAD----FLGRKRELII-AAVLYALGALTTAYAPGLG-------- 81 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~i~~~~~~~~~~~~-------- 81 (443)
.+.+.+++|.+..+.+++..+..+...+.+++.|+++| |+||||.++. +.....++..+.+++++.+
T Consensus 27 l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~ 106 (477)
T TIGR01301 27 LTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD 106 (477)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence 34567889999999999999999999999999999999 5999998877 4666677777777776643
Q ss_pred ---------HHHHHHHHHhhhhhhhchhhhhHhhhcCcccch--hhHHHHHHHHHHHHHHHHHHhhhccc--CCc-----
Q 013431 82 ---------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQI--NAV----- 143 (443)
Q Consensus 82 ---------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l~--~~~----- 143 (443)
.++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.++++.. +..
T Consensus 107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~ 186 (477)
T TIGR01301 107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT 186 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence 223333344557788888899999999998765 57999999999999999999988641 110
Q ss_pred -------cchHHHHhhhhHHHHHHHHH-HhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHH
Q 013431 144 -------GGWRYMYGLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIED 215 (443)
Q Consensus 144 -------~~wr~~f~~~~~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (443)
.+.|..|++.++..++..+. .+..+|.|.... ++..++ . . +
T Consensus 187 ~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~----------~~~~~~---~---~-~-------------- 235 (477)
T TIGR01301 187 EACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS----------DDFINS---E---A-A-------------- 235 (477)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc----------ccchhh---h---c-c--------------
Confidence 15688999988877776554 456777652000 000000 0 0 0
Q ss_pred HHHhccccccccccccchhhhcc----C-CchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-c-CCCCc-----hh--
Q 013431 216 TLVSLKSSYTDEKSEGSFLEVFQ----G-PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-A-GFSAA-----AD-- 281 (443)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~-- 281 (443)
+.++.+....++++++ - +..+.+.+.-++.++..+. +..|.+.+..+ . +.+++ ++
T Consensus 236 -------~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~----~~~y~T~~vg~~v~~~~~~~~~~y~~gv 304 (477)
T TIGR01301 236 -------PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFP----FILFDTDWMGREVYGGSVNQGAKYDDGV 304 (477)
T ss_pred -------cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHHhccHHHHHHHcCCCCcchhHHHHHH
Confidence 0000000111222222 2 2455566555555554443 55555555443 2 21111 01
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcccCC-ceEEehhhHHHHHHHHHHHHHHHHhcc--c----------h---hHHHH
Q 013431 282 --ATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGG--F----------P---LVAVS 343 (443)
Q Consensus 282 --~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~---~~~~~ 343 (443)
..+......+...+.+++..++.+|+|+ |+....+.++.++++....+.....++ . + .....
T Consensus 305 r~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 384 (477)
T TIGR01301 305 RAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASAL 384 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHH
Confidence 3344555566666777888899999985 566677777777777766654321110 0 0 12233
Q ss_pred HHHHHHHHHhhccccceeeeeecccCc--cccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc--cchhhhHHHHHHHHHH
Q 013431 344 ALLLYVGCYQISFGPISWLMVSEIFPL--RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAV 419 (443)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~ 419 (443)
..+...|..-.....++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++..+++.
T Consensus 385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa 464 (477)
T TIGR01301 385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSG 464 (477)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHH
Confidence 333334444444556788899998884 456999999999999999999998888777666 3445666666777777
Q ss_pred HHhhhccccCCC
Q 013431 420 LFIVRTVPETKG 431 (443)
Q Consensus 420 ~~~~~~~~~~~~ 431 (443)
+..++.+|+.++
T Consensus 465 ~~~~~~~~~~~~ 476 (477)
T TIGR01301 465 LLALILLPRPRV 476 (477)
T ss_pred HHHHHhCCCCCC
Confidence 777777777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=194.38 Aligned_cols=365 Identities=14% Similarity=-0.004 Sum_probs=238.5
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHH-HHHHHHhccchHHHH-H
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLYA-LGALTTAYAPGLGVL-L 84 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~-i~~~~~~~~~~~~~l-~ 84 (443)
....|.+.+++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.. +.....+..++.... .
T Consensus 46 ~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~ 124 (468)
T TIGR00788 46 LPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAA 124 (468)
T ss_pred hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 3445777788999999999999999999999666 999999998 7777888776663 443334444554444 4
Q ss_pred HHHHHHhhhhhhhchhhhhHhhhcCcccchhhH---HHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHH
Q 013431 85 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL---ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 161 (443)
Q Consensus 85 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~ 161 (443)
+.+++.+++.+...++..+++.|..+ +++... .+......++|.++++.+++.+.+.. +||..|++.+.+.++..
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~-~~~~~f~~~a~l~ll~~ 202 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT-LTRILFLITAALLLLQL 202 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHH
Confidence 48899999999999999999999998 555443 33444445689999999999988877 89999999888887776
Q ss_pred HHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCc
Q 013431 162 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 241 (443)
Q Consensus 162 ~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (443)
+..++++|++... +. +.++++. ...........+ ..++...+.++.+++|.
T Consensus 203 ~~~~~~~E~~~~~-------~~--~~~~~~~----------~~~~~~~~~~~~----------~~~~~~~~l~~~l~~~~ 253 (468)
T TIGR00788 203 FVSNLSKERRAFV-------RP--RIGTYLE----------MNMALLTLGVLA----------NVKVQILGLRGAIQLLE 253 (468)
T ss_pred HHHHhcccccccc-------cc--cccccch----------hhhhhhhhhHHH----------HHHHHHHHHHHHHhcHH
Confidence 6667777753100 00 0000000 000000000000 00011123445567776
Q ss_pred hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHH
Q 013431 242 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 321 (443)
.+...+...+.+. ...+. ....+. ...+..|.++ ...+......+++.+++....+++.+|++.|+.+..+..+.+
T Consensus 254 i~~~l~fifl~~~-~~~~~-~~~~f~-~~~~~lG~s~-~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~ 329 (468)
T TIGR00788 254 IAKPLIFIFLSYA-NLPGA-SGSVFC-ATTQCLPGGP-SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYT 329 (468)
T ss_pred HHHHHHHHHHHHh-hcCCC-CceeEE-EEcccCCCCc-chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 6664443333111 11111 111111 1123456666 889999999999999999999999999999998888777766
Q ss_pred HHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhH
Q 013431 322 LSLLLLSAYYKILG-----GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 396 (443)
Q Consensus 322 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 396 (443)
++...........+ +..+.......+.....+..+.+.. .++.+..|++.+|+.+++.+++.++|..+++.+.+
T Consensus 330 ~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg 408 (468)
T TIGR00788 330 LSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGFLGV 408 (468)
T ss_pred HHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 65544321100000 1122233333444445555555554 88889999999999999999999999999999999
Q ss_pred HHHHhhc-----cchhhhHHHH
Q 013431 397 PLKELLG-----AENIFLLFAA 413 (443)
Q Consensus 397 ~l~~~~g-----~~~~~~~~~~ 413 (443)
.+.+..| ++..+....+
T Consensus 409 ~l~~~~g~~~~~~~~~~~~i~i 430 (468)
T TIGR00788 409 LLMETIGITCDNSNNLWLLILG 430 (468)
T ss_pred HHHHHcCCCcccccchHHHHHH
Confidence 9999888 6555554433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=191.79 Aligned_cols=341 Identities=13% Similarity=0.018 Sum_probs=217.4
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hhch-hHHHHHHHHHHHHHHHHHhccch------HHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIAD----FLGR-KRELIIAAVLYALGALTTAYAPG------LGVL 83 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~l 83 (443)
...+.+.+|+++.++|.+..+..+..++..|+.|.++| |+|| |+.++.+....+++..++...++ +..+
T Consensus 30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34566778999999999999999999999999999999 6798 66777788888887666644332 3456
Q ss_pred HHHHHHHhhhhhhhchhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHhhhccc------CCccchHHHHhhhhHH
Q 013431 84 LVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQI------NAVGGWRYMYGLSAPL 156 (443)
Q Consensus 84 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~------~~~~~wr~~f~~~~~~ 156 (443)
++..++.+++.....+...+++.|.. +++||.+..++...+.++|..+.+.+...+. +...+|+....+.+++
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~ 189 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF 189 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66777788888888899999999998 6899999999877777777655554433221 1111577777776666
Q ss_pred HHHHHHHHh-cCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhh
Q 013431 157 ALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLE 235 (443)
Q Consensus 157 ~~~~~~~~~-~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (443)
.++..+..+ ..+|.++. +..+ .++.++.+.+..++.
T Consensus 190 ~~~~~~~~~~~~~e~~~~------------------------------~~~~-------------~~~~~~~~~~~~~~~ 226 (473)
T PRK10429 190 FIVSTIITLRNVHEVYSS------------------------------DNQV-------------SAEGSHLTLKDIVAL 226 (473)
T ss_pred HHHHHHHHHcCceecCCc------------------------------cccc-------------cccccCCCHHHHHHH
Confidence 665544333 35543210 0000 000001111223455
Q ss_pred hccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEeh
Q 013431 236 VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 315 (443)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 315 (443)
+++||.++.+.....+...... ....+.+++.+....+. ...+.......+..+++.++.+++.||+|+|+.+..
T Consensus 227 ~~~n~~~~~ll~~~~~~~~~~~----~~~~~~~y~~~y~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 227 IYKNDQLSCLLGMALAYNIASN----IINGFAIYYFTYVIGDA-DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG 301 (473)
T ss_pred HhcCHHHHHHHHHHHHHHHHHH----HHhhheeeEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 6677766665554444433222 23334444444443332 455666666778889999999999999999999877
Q ss_pred hhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccC-------ccccchhHHHHHHHHHHHH
Q 013431 316 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSN 388 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~ 388 (443)
+..+..++.+.+...........+..++ ..+..+.......+..+++.+|..+ .+..|..+|.......++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~ 380 (473)
T PRK10429 302 ASIFPVLSCGVLLLMGLAAPHNALLIVI-AGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS 380 (473)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence 7665554444432211111122222222 2222323333333455577778754 3445668899999999999
Q ss_pred HHHHHhhHHHHHhhcc
Q 013431 389 AIVTFAFSPLKELLGA 404 (443)
Q Consensus 389 ~~~~~~~g~l~~~~g~ 404 (443)
.+++.+.|.+.+..||
T Consensus 381 al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 381 AFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999998876
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=179.15 Aligned_cols=371 Identities=13% Similarity=0.051 Sum_probs=210.1
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHhhhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~ 95 (443)
+.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.++.+..+ +...+.++..+.++|.|
T Consensus 36 L~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 36 LTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYG 115 (493)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 4667899999999999999999999999999999999 999999999999999988776543 22334445555556677
Q ss_pred hhchhhhhHhhhcCccc--chhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHH
Q 013431 96 LAMHGAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 173 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~ 173 (443)
...+...++++|.+|++ +|..+.++...+.++|..++|.+.+++.+.. |||+.|.+.++..++..+..+...+.
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~~~~~--- 191 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLCGNRH--- 191 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 77788889999999875 6899999999999999999999999988877 99999998766444443333322111
Q ss_pred HHHh-hhcCCCchhhHHHHHHH------HHh----hhhcCCCCCCcchhhHHH-HHHhccccccccccccchhhhccCCc
Q 013431 174 LLLR-AVQGKGSLQEYKEQAIS------ALG----KLRRRPPGDKLSERQIED-TLVSLKSSYTDEKSEGSFLEVFQGPN 241 (443)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (443)
+.+. ..+++.. +++ +.... ... ......-.+......... ......--.....++.+-.| |+|.
T Consensus 192 l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--r~r~ 267 (493)
T PRK15462 192 FTHTRGVNKKVL-RAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQ--RKEL 267 (493)
T ss_pred hccCCCCCCCCc-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--HhhH
Confidence 0000 0000000 000 00000 000 000000000000000000 00000000000000000000 1110
Q ss_pred --hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCC--ce-----E
Q 013431 242 --LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR--RP-----L 312 (443)
Q Consensus 242 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~-----~ 312 (443)
...+.+...+.+..+......+..|.....+..-++-+....+..+...+..++.+++..++-.|..+ |. -
T Consensus 268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K 347 (493)
T PRK15462 268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK 347 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 11112222222222222222222232221111101111346677778888888888777776555532 21 1
Q ss_pred EehhhHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHH-HHHH
Q 013431 313 LIGGVCGIALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN-FGSN 388 (443)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~ 388 (443)
..+++++.+++++.+.......+ ..+..+++...++........+|+..+.++++.|++.+|..+|+..... .++.
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~ 427 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777666654332211 1344556666666677778889999999999999999999999985532 4555
Q ss_pred HHHHHhhH
Q 013431 389 AIVTFAFS 396 (443)
Q Consensus 389 ~~~~~~~g 396 (443)
.++..+.+
T Consensus 428 ~~~g~~~~ 435 (493)
T PRK15462 428 YLAGVIAD 435 (493)
T ss_pred HHHHHHHH
Confidence 55544444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=182.49 Aligned_cols=336 Identities=19% Similarity=0.169 Sum_probs=247.2
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhH-HHHHHHHHHHHHHHHHhcc-c-------hHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIAD----FLGRKR-ELIIAAVLYALGALTTAYA-P-------GLG 81 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~-~l~~~~~~~~i~~~~~~~~-~-------~~~ 81 (443)
.+...+.+|+++..+|.+.....+..++..|+.|.++| |+|||| .++++....+++..++... | ...
T Consensus 25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 45677888999999999999999999999999999999 899765 5567888888888887766 4 233
Q ss_pred HHHHHHHHHhhhhhhhchhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHhhhcccCCcc------chHHHHhhhh
Q 013431 82 VLLVGRLLYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVG------GWRYMYGLSA 154 (443)
Q Consensus 82 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~------~wr~~f~~~~ 154 (443)
.+.+..++..++.........++..|..+ ++||.+..+.-..+..+|..+...+.+.+.+... +|++..++.+
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 46777777899999999999999999997 5789999999999999998777766666554322 6999988888
Q ss_pred HHHHHHHHHHh-cCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccch
Q 013431 155 PLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 233 (443)
Q Consensus 155 ~~~~~~~~~~~-~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
++.++..+... ..+|+++ +.+++.++.+-++.+
T Consensus 185 iv~~v~~~i~~~~~ke~~~----------------------------------------------~~~~~~~~~~~~~~~ 218 (428)
T PF13347_consen 185 IVGLVFFLITFFFVKERSV----------------------------------------------EVTEQEKKISLRDSL 218 (428)
T ss_pred HHHHHHhhhhhheeeeccc----------------------------------------------cccccccccccccch
Confidence 88877665444 4555110 000111222334567
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEE
Q 013431 234 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 313 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 313 (443)
+++++||.++.......+..+.... .....+++.++.-..+ ...+.......+..+++.++.++++||+|+|+.+
T Consensus 219 ~~~~~nr~~~~l~~~~~~~~~~~~~----~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~ 293 (428)
T PF13347_consen 219 RSLFRNRPFRILLLAFFLQWLAFAL----MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY 293 (428)
T ss_pred hhhcccchHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh
Confidence 8889999888777666555554433 3334455555543333 4566777788899999999999999999999999
Q ss_pred ehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccC-------ccccchhHHHHHHHHHH
Q 013431 314 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFG 386 (443)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~ 386 (443)
..+..+.+++.+.+.+... .+...........+..........+++.+|..+ ++..|...|+.+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 294 IIGLLLAALGFLLLFFLGP----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred hhhHHHHHHHHHHHHHHHh----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 9998888887777665431 233333344444444444555677788998876 34468888999999999
Q ss_pred HHHHHHHhhHHHHHhhccc
Q 013431 387 SNAIVTFAFSPLKELLGAE 405 (443)
Q Consensus 387 g~~~~~~~~g~l~~~~g~~ 405 (443)
+..+++.+.+.+.+..|+.
T Consensus 370 ~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 370 GQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999999998887754
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-23 Score=184.32 Aligned_cols=359 Identities=14% Similarity=0.110 Sum_probs=230.0
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH--HHHHH-HHhcc----chHH-HHHHHHHH
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLY--ALGAL-TTAYA----PGLG-VLLVGRLL 89 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~i~~~-~~~~~----~~~~-~l~~~r~l 89 (443)
++++.|+|.+|+|.+.++..+...+.+|+.|.++||+|.||-++..+... ..+.. ...+. .|.+ ..+++-..
T Consensus 34 L~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~ 113 (412)
T PF01306_consen 34 LTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIY 113 (412)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTT
T ss_pred HccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999766554433222 12222 21222 2322 33334444
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC-C
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-P 168 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~ 168 (443)
.|+......|+..+++.++. ++.+.-.|-.-.+.++|.+++..++|.+.+. +-+..||+....+++..++.+.. |
T Consensus 114 l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 114 LGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp TTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555556666666655543 3456667778888999999999999988764 45677887776666655554443 3
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
+.++.. +..+ .++.++++.+.++..+++|+|++|.+.+.
T Consensus 190 ~~~~~~----------------------------~~~~-------------~~~~~~~~~~~~~~~~l~k~~~fw~~~l~ 228 (412)
T PF01306_consen 190 DVPPQA----------------------------EVAD-------------ALGAKKDKVSLKDVLSLFKMRNFWFFVLF 228 (412)
T ss_dssp -SSSSS-----------------------------SST-------------TSSS------HHHHHHHTTSHHHHHHHHH
T ss_pred cCchhh----------------------------hhhc-------------ccccCCCCCcHHHHHHHhcchhHHHHHHH
Confidence 322100 0000 00000111112345678899999887765
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcC----CCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAG----FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 324 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 324 (443)
.......+. .+....+.+..... .++ ...|.+.+...+.+++.-.+..++.+|+|.|+.++++..++++-.
T Consensus 229 v~g~~~~Y~----vfdqqf~~y~~~~f~~~~~g~-~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi 303 (412)
T PF01306_consen 229 VIGVAAIYD----VFDQQFPIYFASFFQSAGQGN-QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRI 303 (412)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHTSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhcccccCh-hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 444433332 23333444444432 222 457888888889999999999999999999999999988888887
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHH-HHHHHHHHHHHHHhhHHHHHhhc
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
...++. ++++.....-.+-..-...... ...-++++.+|++..++...+. +...+++..+.+.+.|.+.|+.|
T Consensus 304 ~~~~~~-----~~~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G 377 (412)
T PF01306_consen 304 IGSGFA-----TNPWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG 377 (412)
T ss_dssp HHHHT-------SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----cchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence 777653 3344433333333333333333 3337899999999989998886 56689999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHhhhccccCCCC
Q 013431 404 AENIFLLFAAIAFLAVLFIVRTVPETKGL 432 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (443)
++..+++++.+.+...++..+.+++++++
T Consensus 378 ~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 378 FQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred cHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 99999999988888777777777665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-21 Score=180.57 Aligned_cols=333 Identities=13% Similarity=0.008 Sum_probs=204.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh----chhHHH-HHHHHHHHHHHHHHh-c----cc--hHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL----GRKREL-IIAAVLYALGALTTA-Y----AP--GLGV 82 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~i~~~~~~-~----~~--~~~~ 82 (443)
.+.+++.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+...+.. . ++ ....
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 3567788899999999999999999999999999999986 777644 556555554444432 2 11 2233
Q ss_pred HHHHHHHHhhhhhhhchhhhhHhhhcCc-ccchhhHHHHHHHH-----HHHHHHHHHHhhhcccCCcc-chHHHHhhhhH
Q 013431 83 LLVGRLLYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELF-----IVLGILLGYFVGSFQINAVG-GWRYMYGLSAP 155 (443)
Q Consensus 83 l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~ 155 (443)
+++...+.+++.+...+...++..|..+ +++|.+..++-..+ ..++..++|.+++..-.... +|.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 4555677888888888888888777664 46788877666543 33556666666654321110 12211122233
Q ss_pred HHHHHHHH-HhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchh
Q 013431 156 LALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 234 (443)
Q Consensus 156 ~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (443)
++++..+. ....||+++ ++.++...+..++
T Consensus 192 ~~~~~~~~~~~~~~e~~~-------------------------------------------------~~~~~~~~~~~~~ 222 (448)
T PRK09848 192 AGMVLYFICFKSTRENVV-------------------------------------------------RIVAQPSLKISLQ 222 (448)
T ss_pred HHHHHHHHHHcCcEeccC-------------------------------------------------CCccCCCHHHHHH
Confidence 33332222 223344221 0000011122467
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEe
Q 013431 235 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 314 (443)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 314 (443)
+++|||.++...+...+....... .....|++.++....++...++......++.+++.++.+++.||+++|+.+.
T Consensus 223 ~l~~n~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~ 298 (448)
T PRK09848 223 TLKRNRPLFMLCIGALCVLISTFA----VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL 298 (448)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHH----HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 788999887766655555443322 3344555555543333244444444445677889999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCcc-------ccchhHHHHHHHHHHH
Q 013431 315 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR-------TRGRGISLAVLTNFGS 387 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g 387 (443)
.+..+..++.+.+.+. ...+........+..+.......+..+++..|..|.+ .+|...|+.+....+|
T Consensus 299 ~g~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 299 IGALLGTCGYLLFFWV----SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred HHHHHHHHHHHHHHHc----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 8877766666555431 1112222222222222223333344556777776543 4689999999999999
Q ss_pred HHHHHHhhHHHHHhhcc
Q 013431 388 NAIVTFAFSPLKELLGA 404 (443)
Q Consensus 388 ~~~~~~~~g~l~~~~g~ 404 (443)
..+++.+.+.+.+..|+
T Consensus 375 ~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 375 QAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999887775
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=176.79 Aligned_cols=331 Identities=11% Similarity=0.010 Sum_probs=210.7
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hchh-HHHHHHHHHHHHHHHHHhccch------HHHHH
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLL 84 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~l~ 84 (443)
....+..|+++..+|.+..+.-+.-++..|+.|.++|| +||| +.++++.+..+++..++-..|+ ...+.
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~ 113 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA 113 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 34567889999999999999999999999999999995 7976 5556677778877776655442 44566
Q ss_pred HHHHHHhhhhhhhchhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc------cchHHHHhhhhHHH
Q 013431 85 VGRLLYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLA 157 (443)
Q Consensus 85 ~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------~~wr~~f~~~~~~~ 157 (443)
+...+..++.......-.++..|..+ +|||.+..++...+..+|..+++.+...+.... .+|+....+.++++
T Consensus 114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~ 193 (460)
T PRK11462 114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA 193 (460)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 67777888888888889999999987 689999999999999998887776654433221 26787777777766
Q ss_pred HHHHHHHhc-CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhh
Q 013431 158 LLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV 236 (443)
Q Consensus 158 ~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (443)
++.....+. .+|.++ + +.++.+.+..++..
T Consensus 194 ~i~~~i~~~~~kE~~~------------------------------~-------------------~~~~~~~~~~l~~~ 224 (460)
T PRK11462 194 FMMLAFCFFTTKERVE------------------------------A-------------------PPTTTSMREDLRDI 224 (460)
T ss_pred HHHHHHHHhcceeccC------------------------------C-------------------CccCCCHHHHHHHH
Confidence 665544433 333210 0 00000112345667
Q ss_pred ccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehh
Q 013431 237 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG 316 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 316 (443)
++|+.++.+.....+.............+|. +.....+ ...+.......+..+++.+++++++||+++|+....+
T Consensus 225 ~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~----~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~ 299 (460)
T PRK11462 225 WQNDQWRIVGLLTIFNILAVCVRGGAMMYYV----TWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWT 299 (460)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhHhhhhh----hhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 7888776655443333333222112222332 2222222 3445566777788899999999999999998876544
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccC-------ccccchhHHHHHHHHHHHHH
Q 013431 317 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNA 389 (443)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~ 389 (443)
..+..+....+.+. +...........++ .+.......++.+++..|..+ .+..|...+.......+|.+
T Consensus 300 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a 375 (460)
T PRK11462 300 NALLAVISLAMFFV---PMQASITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA 375 (460)
T ss_pred HHHHHHHHHHHHHh---chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 44333322222221 11112122222222 233333334455566676654 23334445666788999999
Q ss_pred HHHHhhHHHHHhhcc
Q 013431 390 IVTFAFSPLKELLGA 404 (443)
Q Consensus 390 ~~~~~~g~l~~~~g~ 404 (443)
+++.+.|.+.+..|+
T Consensus 376 lg~~i~g~iL~~~Gy 390 (460)
T PRK11462 376 FGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999887776
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=167.33 Aligned_cols=275 Identities=16% Similarity=0.082 Sum_probs=187.2
Q ss_pred ccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc------------
Q 013431 76 YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV------------ 143 (443)
Q Consensus 76 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------------ 143 (443)
...+++.++++-++.|.|.+...+..++++++..++|++++.+++.+.++++|..++|.+++.+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999876321
Q ss_pred ---cchHHHHhhhhHHHHHHHHHHhc--CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHH
Q 013431 144 ---GGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 218 (443)
Q Consensus 144 ---~~wr~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (443)
.+||++|++.+.+..+..+.+.+ +||..+ + +.+
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-------------~-----------------------~~~------ 123 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-------------A-----------------------DVA------ 123 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-------------c-----------------------ccc------
Confidence 27999999776665555444433 344210 0 000
Q ss_pred hccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhc---CCCCchhHHHHHHHHHHHHHH
Q 013431 219 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA---GFSAAADATRVSVVIGVFKLV 295 (443)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 295 (443)
+ . .+++....++.+++|.++...+..++ +.+.......|.+.|+++. +.++ .+.+........+.++
T Consensus 124 ~--~---~~~~~~~~~~~~~~~~~~l~~~~~f~----yvg~e~~~~~w~~~yl~~~~~~g~s~-~~a~~~~s~~~~~~~i 193 (310)
T TIGR01272 124 R--V---SSGDTTQKTSAFQFTHLVLGALGIFV----YVGAEVSAGSFLVNFLSDPHALGLPE-DQAAHFTAYTWGGAMV 193 (310)
T ss_pred c--c---ccccccchhhHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHH
Confidence 0 0 00000011234555555544433333 3333345777888888753 5554 7888999999999999
Q ss_pred HHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccch
Q 013431 296 MTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 375 (443)
Q Consensus 296 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 375 (443)
|+++.+++.||+++|+.+..+..+..+...+.... + .........+.+.+.+.. .|...+...+..|+ +.++
T Consensus 194 Gr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----~-~~~~~~~~~l~g~~~s~i-~P~~~s~a~~~~~~-~~~~ 265 (310)
T TIGR01272 194 GRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----H-GYVAMWFVLALGLFNSIM-FPTIFSLALNALGR-HTSQ 265 (310)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----C-CHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhh-hhhh
Confidence 99999999999999988776665555544333221 1 122222333333333333 34444666676664 4567
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHH
Q 013431 376 GISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 411 (443)
Q Consensus 376 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (443)
+.++. ....+|+++.|.+.|.+.|..|.+.++++.
T Consensus 266 asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 266 GSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred hHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 77775 567899999999999999999987777643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=166.60 Aligned_cols=360 Identities=17% Similarity=0.170 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHHHhcc-c-hHHHHHHHHHHHhhhhhhhchhhhh
Q 013431 27 RLFSLALCGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGALTTAYA-P-GLGVLLVGRLLYGLGIGLAMHGAPL 103 (443)
Q Consensus 27 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~ 103 (443)
+..++..++..+..++..|+.|.++|+-|+||.++ +...+..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999998766554 4555555666666663 3 4444555566666778888889999
Q ss_pred HhhhcCcccch--------------------------hhHHHHHHHHHHHHHHHHHHhhhcccCCcc-------chHHHH
Q 013431 104 YIAETCPSQIR--------------------------GTLISLKELFIVLGILLGYFVGSFQINAVG-------GWRYMY 150 (443)
Q Consensus 104 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-------~wr~~f 150 (443)
++.|..+++++ ++..+.-.+...+|.++...+...+..... +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 899999888888888887776554432211 357888
Q ss_pred hhhhHHHHHHH-HHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhcccccccccc
Q 013431 151 GLSAPLALLMG-IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 229 (443)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (443)
.+.++.-++.. ...+++||.|+. + ..+......... -++-
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~--------~----------------------~~~~~~~~~~~g---------~~~l 270 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGP--------R----------------------PLPSGSSYLRFG---------FKRL 270 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC--------C----------------------CCCcchhHHHHH---------HHHH
Confidence 87777765554 455667775530 0 000000000000 0011
Q ss_pred ccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 013431 230 EGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 308 (443)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 308 (443)
...++++.|.|+....++ .++.+..+.+.+......+.+ +.+++. .+.........+.+++|+++.+++.||+|
T Consensus 271 ~~t~k~~~~~~~~~~fLi----a~~l~~dg~~ti~~~~~i~a~~~lg~s~-~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g 345 (477)
T PF11700_consen 271 WRTFKEIRKLRQLFLFLI----AYFLYSDGVNTIISFAGIYATEVLGMST-TQLIVFGLVVQIVAIIGALLFGWLQDRFG 345 (477)
T ss_pred HHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 123445555555555553 334444444556666666666 567776 77888888889999999999999999999
Q ss_pred Cc--eEEehhhHHHHHHHHHHHH--HHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHH
Q 013431 309 RR--PLLIGGVCGIALSLLLLSA--YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 384 (443)
Q Consensus 309 ~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 384 (443)
.| +++..+.+...+..+...+ .....+..+..-+....++.+.......+...++.+|+.|+++.+..+|++...+
T Consensus 346 ~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~g 425 (477)
T PF11700_consen 346 PKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITG 425 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 98 6666555444222211111 1100011122223344445555566666777899999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHhhc-cchhhhHHHHHHHHHHHHhhhccccCCC
Q 013431 385 FGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPETKG 431 (443)
Q Consensus 385 ~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (443)
...+.+||.+.|.+.+..| .+..+....++.+++.++. ...+.+|+
T Consensus 426 k~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 426 KASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 9999999999999999998 6677777777777766654 33444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=161.33 Aligned_cols=335 Identities=18% Similarity=0.112 Sum_probs=237.5
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hhchh-HHHHHHHHHHHHHHHHHhccch------HHHHHHH
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIAD----FLGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVG 86 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~ 86 (443)
..+.+|+++..+|.+..+.-+--++..|+.|.++| |+||| +.++.+.+..++.+.++-.+++ ....++.
T Consensus 39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt 118 (467)
T COG2211 39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT 118 (467)
T ss_pred HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence 45778999999999999999999999999999999 58864 5667788999999988888774 4466777
Q ss_pred HHHHhhhhhhhchhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHhhhcccC----C--ccchHHHHhhhhHHHHH
Q 013431 87 RLLYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQIN----A--VGGWRYMYGLSAPLALL 159 (443)
Q Consensus 87 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----~--~~~wr~~f~~~~~~~~~ 159 (443)
..+.+++.......-.++..|..+ ++||.+..++-..+.++|..+...+...+.. . ..||+..-.+.++++.+
T Consensus 119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i 198 (467)
T COG2211 119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI 198 (467)
T ss_pred HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence 889999999999999999999985 6899999999999999997666555444332 1 22788887777777777
Q ss_pred HHHHHhc-CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhcc
Q 013431 160 MGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 238 (443)
Q Consensus 160 ~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
..+..++ ..|.+. + .. ..++..+.+.+.++..+++
T Consensus 199 ~~l~~~~~v~ER~~----------------------------~----~~------------~~~~~~~~~~~~~~~~~~~ 234 (467)
T COG2211 199 LLLFCFFNVKERVV----------------------------E----TQ------------PTKTGVKLKLKDSFLLIFK 234 (467)
T ss_pred HHHHHHHHhhcccC----------------------------c----cc------------cCcccccccHHHHHHHHHc
Confidence 6655543 333221 0 00 0000011122234456788
Q ss_pred CCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhH
Q 013431 239 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 318 (443)
|+.++...+...+....... ......++.+..-..++............+.+++.++..++.+|+|+|+....+.+
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i----~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~ 310 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNI----RGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL 310 (467)
T ss_pred cchHHHHHHHHHHHHHHHHH----HhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence 88877776644444443333 33333333443222232556667777777777779999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccC-------ccccchhHHHHHHHHHHHHHHH
Q 013431 319 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIV 391 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~ 391 (443)
+.+++..++.+.. .+.....++..+..+.......++.|++++|..+ .+..|...|...++..+|.+++
T Consensus 311 ~~~i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala 386 (467)
T COG2211 311 LLAVGYLLLYFTP----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA 386 (467)
T ss_pred HHHHHHHHHHhhc----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence 8888887776642 2333334344344444455566788899998754 3456788899999999999999
Q ss_pred HHhhHHHHHhhcc
Q 013431 392 TFAFSPLKELLGA 404 (443)
Q Consensus 392 ~~~~g~l~~~~g~ 404 (443)
..+.|+..+..||
T Consensus 387 ~~~~g~~L~~~Gy 399 (467)
T COG2211 387 GFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998875
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=154.36 Aligned_cols=339 Identities=15% Similarity=0.101 Sum_probs=213.8
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~ 92 (443)
+..+|.+++.++..++.+.|.....+-+.+.|++.|| +|-|..-++-+....++.+..+ ..+.+|.+..+|++.|+
T Consensus 69 ~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGI 148 (459)
T KOG4686|consen 69 DFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGI 148 (459)
T ss_pred hhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeecc
Confidence 4556777888899999999999999999999999995 6877665555555566666654 47899999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc---CCC
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS---LPP 169 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~---~~e 169 (443)
|.-....+.+++..-|+..||.+.++|+......+|..+--.+.+++.+.. + .++-...-..+.+.+.+- ...
T Consensus 149 GgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~-~---~~~~~~ghT~LG~~l~~~~~tc~~ 224 (459)
T KOG4686|consen 149 GGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM-G---RMFPGVGHTLLGLWLCFEVKTCKQ 224 (459)
T ss_pred CchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH-H---HhcccchHHHHHHHHHHHHHHHHH
Confidence 988888999999999999999999999999999999876666666554432 1 011000111111100000 000
Q ss_pred ChHHHHHhhhcCCCchhh-HHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 170 SPRWLLLRAVQGKGSLQE-YKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 170 s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
+---... .+ ..+++++.+.+..... .+..+..+.. -+ .|.+|.+.+.
T Consensus 225 slical~---------lg~~D~rAerilh~e~g~~---------------------Ge~pkLtdv~-~f-~ppfw~~~ii 272 (459)
T KOG4686|consen 225 SLICALS---------LGLSDDRAERILHLEEGFL---------------------GEEPKLTDVN-TF-YPPFWVLVII 272 (459)
T ss_pred HHHHHHH---------hhhhhhHHHHHHhhhcCcc---------------------cCCccccccc-cc-CccHHHHHHH
Confidence 0000000 00 0111111111110000 0000101111 11 2456766665
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
+.+.+...+ .+....|.++++ .|+++ ..++.+.+.......+.+++.|.++||+|++...+.+.++..+..=..
T Consensus 273 cv~yyva~f----PFi~lg~~fF~~rfGlS~-~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~ 347 (459)
T KOG4686|consen 273 CVLYYVAWF----PFITLGPMFFQKRFGLSA-VSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG 347 (459)
T ss_pred HHHHHHHHH----HHhhhhHHHHHHhhCCCh-hhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh
Confidence 555555443 245556666665 56666 777777777778888889999999999999988877665544433222
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
..+.. .+++.... +.+..+... ....|.+++.+.|.++.|++.|.++.+.++|-++.|.+.|.+.|..|
T Consensus 348 l~Ft~---lsPy~~m~---~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 348 LFFTF---LSPYTSMT---FLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHhhh---ccHHHHHH---HHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 22211 23333332 222222221 12234667778899999999999999999999999999999999776
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-17 Score=145.52 Aligned_cols=351 Identities=17% Similarity=0.181 Sum_probs=236.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHhhhhhhhchhh
Q 013431 26 FRLFSLALCGSLYGALLGSILVYSIADFLGRK-RELIIAAVLYALGALTTAYAPG---LGVLLVGRLLYGLGIGLAMHGA 101 (443)
Q Consensus 26 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr-~~l~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~ 101 (443)
.+..+...++..+..++.+|+.|.++|+.|+| +.+-....+..+...+..++++ ++..++...+..++.......-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 34578999999999999999999999999965 5555666666677777777654 4455666788889988899999
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhh--hccc----------------CCccchHHHHhhhhHHHHHHHH-
Q 013431 102 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQI----------------NAVGGWRYMYGLSAPLALLMGI- 162 (443)
Q Consensus 102 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--~~l~----------------~~~~~wr~~f~~~~~~~~~~~~- 162 (443)
.+++.+..++++-++..++-.....+|..+.-+.. .... +.. .-|..+.+.++--++..+
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGE-DVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccc-cchhHHHHHHHHHHHHHhH
Confidence 99999999988878877776666666655544432 1111 112 567777777777666654
Q ss_pred HHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCch
Q 013431 163 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 242 (443)
Q Consensus 163 ~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
.++..++.++- .........+. -++-+.+++++.++++.
T Consensus 216 m~~~v~~~~~~--------------------------------~~~~~~~l~~g---------~k~L~~t~k~i~~~~~i 254 (438)
T COG2270 216 MILNVHDAEKI--------------------------------SSPPPTALRNG---------FKELKSTFKEIRGRKNL 254 (438)
T ss_pred HHhcccccccc--------------------------------cccchHHHHHH---------HHHHHHHHHHHhcccch
Confidence 44445443310 00000000000 11123356677777766
Q ss_pred hHHHHHHHHHHHHHHhCchhhHhhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHH
Q 013431 243 KAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 321 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 321 (443)
.+++++ .+.+.-+.+........+-. +.|.++ .+.........+.+++|+++.|++.||++.|+++..+.++..
T Consensus 255 ~~FLiA----~~~~~DGv~til~~~~~fg~~~~gls~-~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 255 VLFLIA----RFFYIDGVNTILAMGGVFGAADLGLSS-TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred HHHHHH----HHHHHhhHHHHHHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 666643 44444455567777777766 567776 888888899999999999999999999999999988877766
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 013431 322 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 401 (443)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 401 (443)
+..+...+. .... ....+.++.+..........-++..+..|+++.++.+|+++..+...+..+|.+.+.+.+.
T Consensus 330 ~~~~~~~~~-----~~~~-~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 330 IAALYLIFL-----EGEL-DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHHHHHHc-----cccH-HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 655544432 2222 2333333444444445556678999999999999999999999999999999999999998
Q ss_pred hcc-chhhhHHHHHHHHHHHHhhhccccCC
Q 013431 402 LGA-ENIFLLFAAIAFLAVLFIVRTVPETK 430 (443)
Q Consensus 402 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (443)
+|. +..+....++..++..+ +...|+.+
T Consensus 404 Tg~~r~g~~~i~vll~iGl~~-L~~v~~~~ 432 (438)
T COG2270 404 TGSSRAGVLSIIVLLLIGLLL-LLRVKVPG 432 (438)
T ss_pred hcchhhHHHHHHHHHHhhHhh-EEeecCCC
Confidence 874 33444444444444443 33344443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=148.38 Aligned_cols=364 Identities=15% Similarity=0.117 Sum_probs=251.5
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc------chHH--HHHHHHHH
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------PGLG--VLLVGRLL 89 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~--~l~~~r~l 89 (443)
...-++ +.+..-|+.-+|++.+....+++-|+.|++|-|...+++..+..++..+-.++ +.++ ....+..+
T Consensus 71 ~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~i 149 (480)
T KOG2563|consen 71 VNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSI 149 (480)
T ss_pred HHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHH
Confidence 344456 67778899999999999999999999999999999999999999999988775 3445 67788999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-----cchHH--HHhhhhHHHHHHHH
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRY--MYGLSAPLALLMGI 162 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----~~wr~--~f~~~~~~~~~~~~ 162 (443)
.+.++-........+..-|++++||..+..+-..+..+|.+++.++...+..+. ..|.. .|+....++.+.++
T Consensus 150 aa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~ 229 (480)
T KOG2563|consen 150 AAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLA 229 (480)
T ss_pred HHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999888888777888899999999999999999999999999999988887653 14654 35544444444333
Q ss_pred HH-hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCc
Q 013431 163 GM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 241 (443)
Q Consensus 163 ~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (443)
+. +..+|.|+. +.+. .+ ...++..-..+.++++++++
T Consensus 230 l~~~~~~~~P~t---------------------------------Pps~---s~------~~~~~~~f~~si~~~~~n~~ 267 (480)
T KOG2563|consen 230 LVLFVFTKKPPT---------------------------------PPSA---SQ------AALQDASFPKSIKSCFKNRQ 267 (480)
T ss_pred HHHHhcCCCCCC---------------------------------CCch---hH------hhhhcCcHHHHHHHHHcCcc
Confidence 22 333332210 0000 00 00001123456788999998
Q ss_pred hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceE-EehhhHHH
Q 013431 242 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL-LIGGVCGI 320 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~ 320 (443)
+....++..+....... ....+...+...++.. ..+|.......+++++++.+.|.+.||.+.-+. .+......
T Consensus 268 F~il~~~ygi~~g~F~~----l~~~l~~~l~~sgY~~-~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~ 342 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNS----LSTLLNLALCPSGYEG-VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFA 342 (480)
T ss_pred HHHHHHHHhhhHHHHHH----HHHHhhhccccccCCc-cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 88777666555554432 3333333344455555 788999999999999999999999999877544 33333333
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013431 321 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 400 (443)
.++.+.+..... .......+.......+.+..+..|+..-+..|..-|..-++..|+.+..+++-+.+-..+.+...+
T Consensus 343 ~v~~~~l~~~t~--~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~ 420 (480)
T KOG2563|consen 343 LVGTLMLLTCTL--FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE 420 (480)
T ss_pred HHHHHHHHHhhc--cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence 333222222211 122334444555666677778888888898998666778889999999999999999999998888
Q ss_pred hhc----cchhhhHHHHHHHHHHHHhhhccccCCC
Q 013431 401 LLG----AENIFLLFAAIAFLAVLFIVRTVPETKG 431 (443)
Q Consensus 401 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (443)
..+ +...-+.....+.+...+..++.++.|+
T Consensus 421 ~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 421 DLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred ccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 777 4444455555555555555555444333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=155.08 Aligned_cols=400 Identities=15% Similarity=0.098 Sum_probs=250.1
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHhhhhhhhc
Q 013431 22 LGSTFRLFSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAM 98 (443)
Q Consensus 22 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 98 (443)
+|.++++..-+.+.|.--.-....++||++||+ |+|+++..|.++..+|.++.+.++ +...++++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 559999999999999988889999999999996 999999999999999999999984 78899999999999999999
Q ss_pred hhhhhHhhhcCccc--chhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHH
Q 013431 99 HGAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 176 (443)
Q Consensus 99 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~ 176 (443)
+...+++.|.+|++ +|-..++++.++.++|.+++|++.+++.+.. ||+..|...++-..+.++..+..+..-.....
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence 99999999999864 3677899999999999999999999998888 99999999888777776655544321100000
Q ss_pred hhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHH------Hh---ccccccccccccchhhhccCCchhHHHH
Q 013431 177 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL------VS---LKSSYTDEKSEGSFLEVFQGPNLKAFII 247 (443)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
++++...+.+.................--.....+...... .. ..+....++....-+++ .....+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~---~~~~~Lfl 291 (498)
T COG3104 215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRL---LAAIPLFL 291 (498)
T ss_pred CCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH---HHHHHHHH
Confidence 00000000000000000000000000000000000000000 00 00000000000000111 11223444
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc--eE-----EehhhHHH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PL-----LIGGVCGI 320 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~-----~~~~~~~~ 320 (443)
...+.+..+....+.+..|.....++..+.-+....+..+...+..++.+++..++..|.+++ .. .-+++.++
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 444555555555555555555544433122224567777888888888888888777774433 11 22344555
Q ss_pred HHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhH
Q 013431 321 ALSLLLLSAYYKI----LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 396 (443)
Q Consensus 321 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 396 (443)
..+++++...... .+..+..+++...++........+|+..+++....|+...+..++........+..++..+.+
T Consensus 372 g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 372 GLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 5555555443111 223456666667777777788888999899999999999898888887777777777766665
Q ss_pred H------HHHhhccchhhhHHHHHHHHHHHHhhhc
Q 013431 397 P------LKELLGAENIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 397 ~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
. ..+.......|..++.+.++........
T Consensus 452 ~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 452 LTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 2 3344455667777777766666554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=133.81 Aligned_cols=333 Identities=17% Similarity=0.140 Sum_probs=220.8
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHH-HHHHHHHHHHHHHhcc-----c-------
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLG-----RKRELI-IAAVLYALGALTTAYA-----P------- 78 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~-~~~~~~~i~~~~~~~~-----~------- 78 (443)
-+..|++++..-.+.+.+...+.. ...+.+|..+|+.+ ||..++ .|..+...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 467899999999999999998765 56999999999998 775554 4666666655555432 2
Q ss_pred hHH----HHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhh
Q 013431 79 GLG----VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA 154 (443)
Q Consensus 79 ~~~----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~ 154 (443)
+.+ ...+.-.+.|+|.+...+...+++.|..|+|+|+++.++.....-+|.+++..+.+.+.+.+..-|..-.+..
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 222 3445567899999999999999999999999999999999999999999999999998887744444333322
Q ss_pred --HHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccc
Q 013431 155 --PLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS 232 (443)
Q Consensus 155 --~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (443)
++.+...++..+-.|.++ . +. . ..++.++..-...
T Consensus 164 ~a~i~~~l~~ia~wg~E~r~----------~------------------~~--~-------------~~~~~~~~~f~~a 200 (403)
T PF03209_consen 164 VALIALLLNLIALWGQEPRR----------S------------------RR--A-------------AAAERPRPPFREA 200 (403)
T ss_pred HHHHHHHHHHHHHHhcccCC----------c------------------cc--c-------------cCCCCCCccHHHH
Confidence 222222222222222110 0 00 0 0000111222345
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-ccCCc
Q 013431 233 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRR 310 (443)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~ 310 (443)
+++++.+|+.++++...++..+.++. ....+.+|-.+ .|.+. .+...+....+.+.+++-...+++.. |.+++
T Consensus 201 ~~~~~~~~~a~~f~~fl~l~t~a~~~----QD~iLEPygg~Vfgmsv-~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~ 275 (403)
T PF03209_consen 201 WRQVWASPQARRFFVFLFLGTLAFFM----QDVILEPYGGEVFGMSV-GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK 275 (403)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHh----hHHHcCCchhHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 67778888888877666555554322 33333333333 45555 77888888899999999999998766 56777
Q ss_pred eEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHH
Q 013431 311 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 390 (443)
+...++....+.++.++..... ..+.+.......+++.+ +..+..-..+.+-++.++++.|..+|.....+.+...+
T Consensus 276 ~~a~~G~~~~~~~f~lii~a~~--~~~~~~~~~~~~l~G~g-~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl 352 (403)
T PF03209_consen 276 RTAALGCLLGALAFALIILAGP--LGSPWLFRPGVFLLGLG-NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL 352 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHh-hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH
Confidence 7666666666666665544332 12333333333333333 33333333356667778899999999999999999999
Q ss_pred HHHhhHHHHHh
Q 013431 391 VTFAFSPLKEL 401 (443)
Q Consensus 391 ~~~~~g~l~~~ 401 (443)
+..+.|.+.|.
T Consensus 353 g~~~GG~~~D~ 363 (403)
T PF03209_consen 353 GTFLGGALRDL 363 (403)
T ss_pred HHHHHHHHHHH
Confidence 99999988774
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=153.90 Aligned_cols=182 Identities=15% Similarity=0.081 Sum_probs=140.2
Q ss_pred cchh-hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH---HhccchHHHHHHHHHHH
Q 013431 15 RPSL-VAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 15 ~p~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~ 90 (443)
.|.+ ++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..+.... ...+++...++++|++.
T Consensus 273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (490)
T PRK10642 273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML 352 (490)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3443 4667998888888888999999999999999999999999988877654433332 22345677888899999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCC
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 170 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 170 (443)
|++.+........++.|.+|++.|++++++......++..++|.+.+++.+...+|+.+++...+++++..+..+++||+
T Consensus 353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes 432 (490)
T PRK10642 353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 98877777778888899999999999999755555666778888888877655468888777777777776777778999
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhh
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLR 200 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (443)
|+|+..+. .+.+++.|++++.+++.+
T Consensus 433 ~~~~~~~~----~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 433 ANRPLKGA----TPAASDIQEAKEILVEHY 458 (490)
T ss_pred cCCCCCCc----cccccchhhHHHHhhccc
Confidence 98755321 233577888888888876
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-19 Score=166.54 Aligned_cols=371 Identities=17% Similarity=0.164 Sum_probs=3.0
Q ss_pred CCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc-----------
Q 013431 10 PSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----------- 78 (443)
Q Consensus 10 ~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----------- 78 (443)
..+.....+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+++++++++-+
T Consensus 21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 345668899999999999999999999999999999999999998888999999999999999887510
Q ss_pred ---------------------------------------hHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHH
Q 013431 79 ---------------------------------------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS 119 (443)
Q Consensus 79 ---------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 119 (443)
-+..++++.++.|+|.+..++...+|+-|..++++-+..+|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 03468889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCc---------------------cchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhh
Q 013431 120 LKELFIVLGILLGYFVGSFQINAV---------------------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 178 (443)
Q Consensus 120 ~~~~~~~~G~~~g~~l~~~l~~~~---------------------~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~ 178 (443)
+..+...+|.++|.++++.....+ +.|..-|++.+...++..+..+++|++.+-..
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~--- 257 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTS--- 257 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcc---
Confidence 999999999999999998876421 12555566666666666666667776432100
Q ss_pred hcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHHh
Q 013431 179 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 258 (443)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (443)
+..++.+....+ .++ .+ .++..+...........+.-....+++++||.+....++......
T Consensus 258 --------~~~~~~~~~~~~--~~~-~~---~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~---- 319 (539)
T PF03137_consen 258 --------ERQEEKESSERK--EED-SD---KDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF---- 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cccchhhhhhcc--hhh-hh---hhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH----
Confidence 000000000000 000 00 000000000000001112234567778888876666644444333
Q ss_pred CchhhHhhHHHHHHhcCCCCchhHHHHHHHHHH-HHHHHHHHHHHhhcccCC--ceEEehhhHHHHHHHHHHH-HH-HHH
Q 013431 259 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR--RPLLIGGVCGIALSLLLLS-AY-YKI 333 (443)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~-~~-~~~ 333 (443)
....+..|.|-|++.....++..+.++.....+ +..+|.+++|++.+|++- |+......+...+..+... .+ ...
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C 399 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC 399 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence 445588899999887533333555555544443 777888999999999753 4444444433333332211 00 000
Q ss_pred h----------c----------------------------------c--ch-hHHHHHHHHHHHHHhhccccceeeeeec
Q 013431 334 L----------G----------------------------------G--FP-LVAVSALLLYVGCYQISFGPISWLMVSE 366 (443)
Q Consensus 334 ~----------~----------------------------------~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (443)
+ . + .. ...++..++..........|.. ...-+
T Consensus 400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR 478 (539)
T PF03137_consen 400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LITLR 478 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eeeec
Confidence 0 0 0 01 1122222222333333444444 45557
Q ss_pred ccCccccchhHHHHHHH-HHHHHHHHHHhhHHHHHhh
Q 013431 367 IFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 367 ~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~ 402 (443)
.+|+++|+.+.|+...+ +-+|.+.+|.++|.++|..
T Consensus 479 ~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 479 CVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------------------------
T ss_pred cCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 78999999999998876 6778899999999999975
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-16 Score=141.17 Aligned_cols=364 Identities=17% Similarity=0.199 Sum_probs=214.8
Q ss_pred cchhhh-hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHH-hc---cc-hHHHHHHHH
Q 013431 15 RPSLVA-QLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGR-KRELIIAAVLYALGALTT-AY---AP-GLGVLLVGR 87 (443)
Q Consensus 15 ~p~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~-~~---~~-~~~~l~~~r 87 (443)
.|.+++ |.+.+.+..|++.++..++.+++++..|+...|.++ |+.++.|.++..++.++. ++ .+ ..+.++++|
T Consensus 58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R 137 (488)
T KOG2325|consen 58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVAR 137 (488)
T ss_pred chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 455555 688899999999999999999999999999999997 888999999999999988 33 23 678999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc------------cchHHHHhhhhH
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV------------GGWRYMYGLSAP 155 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------------~~wr~~f~~~~~ 155 (443)
++.|+|.+ ......+++++-...++|.++++....+..+|.++||.++..+.... +-+-.+-|+.++
T Consensus 138 ~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i 216 (488)
T KOG2325|consen 138 ILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAI 216 (488)
T ss_pred HHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHH
Confidence 99999977 66778899999888899999999999999999999988876654211 012345667777
Q ss_pred HHHHHHHHH-hcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchh
Q 013431 156 LALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 234 (443)
Q Consensus 156 ~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (443)
..++.++.. +++.|.++--. ++....+ + +.+.-.
T Consensus 217 ~~i~~~v~i~~~f~E~~~~~~----------------------------~~~~~~~---~--------------~~~~~~ 251 (488)
T KOG2325|consen 217 LWIIYIVIILFFFKEVYRGII----------------------------DKKKRSV---E--------------EEKSDI 251 (488)
T ss_pred HHHHHHHHHHhheeecccCcc----------------------------ccccccc---h--------------hhccch
Confidence 777765544 45666543100 0000000 0 000000
Q ss_pred hhccCC--chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhH---HHHHHHHHHHHHHHHHHHHHhh-cccC
Q 013431 235 EVFQGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADA---TRVSVVIGVFKLVMTWIAVAKV-DDLG 308 (443)
Q Consensus 235 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~-d~~~ 308 (443)
+-.+.+ .+....++........+.....-....+......+....+.. +...+..++..+...+...... .++.
T Consensus 252 ~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~ 331 (488)
T KOG2325|consen 252 EKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKID 331 (488)
T ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 111111 122222222222222222111122233333333444432333 3333444444444334433333 3334
Q ss_pred CceEEehhhHHHHHHHHHHHHHHH-Hhc---------------c---------chhHH-HHHHHHHHHHHhhccccceee
Q 013431 309 RRPLLIGGVCGIALSLLLLSAYYK-ILG---------------G---------FPLVA-VSALLLYVGCYQISFGPISWL 362 (443)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (443)
+|+.+..+.+....+..+...... .+. . .+... +....+..+...........+
T Consensus 332 ~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~t 411 (488)
T KOG2325|consen 332 KRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDT 411 (488)
T ss_pred cceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHH
Confidence 566665554433333322211100 000 0 00111 111111111111111122336
Q ss_pred eeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhh
Q 013431 363 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 363 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 424 (443)
+-+|...++.++++.|++......+..++|.+........|++..+.+.....++...+...
T Consensus 412 lySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~ 473 (488)
T KOG2325|consen 412 LYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV 473 (488)
T ss_pred HHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 66788889999999999999999999999999999999999988887776666555544333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=123.66 Aligned_cols=136 Identities=32% Similarity=0.450 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCccc
Q 013431 33 LCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 112 (443)
Q Consensus 33 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 112 (443)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cCCC
Q 013431 113 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP 169 (443)
Q Consensus 113 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 169 (443)
+|++..++.+....+|..+++.+.+.+.+.. +|++.+++.+...++..+..+ ..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999988776 899999998887777655444 3444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=139.30 Aligned_cols=356 Identities=18% Similarity=0.109 Sum_probs=221.6
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---c--hhHHHHHHHHHHHHHHHHHhcc----chHHH
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL---G--RKRELIIAAVLYALGALTTAYA----PGLGV 82 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~---G--rr~~l~~~~~~~~i~~~~~~~~----~~~~~ 82 (443)
....|.+.+++|++++|.....+...+...+ -+++|.++|.+ | ||+-++++.++..++.+..+.. .+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 3446788999999999999999999988755 78899999976 3 5666677777776666655553 35667
Q ss_pred HHHHHHHHhhhhhhhchhhhhHhhhcCc--ccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHH
Q 013431 83 LLVGRLLYGLGIGLAMHGAPLYIAETCP--SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 160 (443)
Q Consensus 83 l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~ 160 (443)
..+.-++..+|.+.....+.+++.|... +++|+...+.......+|.+++..++|.+.+.. ++|..|.+.+++..+.
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLM 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHH
Confidence 7777888999999999999999999984 344788889999999999999999999988887 8999999888777776
Q ss_pred HHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCC
Q 013431 161 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 240 (443)
Q Consensus 161 ~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
.+..++++|+.+ .++++ +.....+++.+... ...++.....++.++++
T Consensus 168 ~~~~~~~~~e~~--------------~~~~~------------~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 215 (433)
T PF03092_consen 168 LIVALFLLEERK--------------VRPAD------------EVFSFGKEEVPCLF------GSFREQLSELWRALQQR 215 (433)
T ss_pred HHHHHHhhhhcc--------------ccccc------------hhhcccccccchhh------HHHHHHHHHHHHHHhhh
Confidence 655544433210 00000 00000000000000 00111223456666667
Q ss_pred chhHHHH-HHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH
Q 013431 241 NLKAFII-GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 319 (443)
Q Consensus 241 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 319 (443)
..+...+ ..++.............++........++++ ...+....+..++.++|..+..+...+..-|+++....++
T Consensus 216 ~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~-~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~ 294 (433)
T PF03092_consen 216 AIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSP-SFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLV 294 (433)
T ss_pred HHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6665544 2222222111111101122111111111333 5566666777777777777777666666666665544443
Q ss_pred HHHHHHHHHHHHH-----HhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHh
Q 013431 320 IALSLLLLSAYYK-----ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 394 (443)
Q Consensus 320 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 394 (443)
..+..+.-..... ..-++.+..+.-..+........+.|.. .+.+|+.|+...|+.+++..++.++|..++..+
T Consensus 295 ~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~l 373 (433)
T PF03092_consen 295 SVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTL 373 (433)
T ss_pred HHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221100000 0001123333344444555555566655 678899999999999999999999999999999
Q ss_pred hHHHHHhhc
Q 013431 395 FSPLKELLG 403 (443)
Q Consensus 395 ~g~l~~~~g 403 (443)
...+.+..|
T Consensus 374 g~~l~~~~~ 382 (433)
T PF03092_consen 374 GAFLMELFG 382 (433)
T ss_pred HHHHHHHcC
Confidence 988888766
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=135.31 Aligned_cols=362 Identities=17% Similarity=0.167 Sum_probs=242.1
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc--------------
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-------------- 77 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-------------- 77 (443)
+.....+++.|+++.++.|++.+.+=++..+...+..+..-|.-|-|.+-+|.++++++++++++-
T Consensus 117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 344678999999999999999999999999999999999999999999999999999999998862
Q ss_pred ------c---------------------------h----HH-HHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHH
Q 013431 78 ------P---------------------------G----LG-VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS 119 (443)
Q Consensus 78 ------~---------------------------~----~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 119 (443)
+ + ++ .++++.++.|+|....++...+|+-|...+++-...+|
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 0 0 22 67788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCc------------------cchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcC
Q 013431 120 LKELFIVLGILLGYFVGSFQINAV------------------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 181 (443)
Q Consensus 120 ~~~~~~~~G~~~g~~l~~~l~~~~------------------~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~ 181 (443)
+..+...+|.++|.+++++....+ +-|..-|++.+.+.++..+.++++|.+.+--.
T Consensus 277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~------ 350 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ------ 350 (735)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc------
Confidence 999999999999999998865321 13666788888888888888888887643100
Q ss_pred CCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCch
Q 013431 182 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 261 (443)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (443)
.+...+..+..+.+++ ....+.... .+-+.-....+++++||.+....+...+- ...+.
T Consensus 351 -------~~~~~~~~~~~k~~~~-~~~~~~~~~---------~~ikdfp~s~~~ll~N~if~~~~l~~~~~----~~~~~ 409 (735)
T KOG3626|consen 351 -------KRKRARDLHVLKTESG-GAKSDKTFG---------KKIKDFPKSIKRLLSNPIFMLVVLASVIE----SLAIT 409 (735)
T ss_pred -------ccchhhhhcccccccc-cccCCcchh---------hhHHHHHHHHHHHhcCchHHHHHHHHHHH----HHHHh
Confidence 0000000000000000 000000000 00111234567788888766655444433 33445
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHH-HHHHHHHHHHHhhcccCC--ceEEehhhHHHHHHHHHHHHHHHH-----
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR--RPLLIGGVCGIALSLLLLSAYYKI----- 333 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----- 333 (443)
.+..|+|-|+++....++..+..+....++ +..+|.+++|++.+|+.. |....+..+...+..+........
T Consensus 410 G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~ 489 (735)
T KOG3626|consen 410 GYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESS 489 (735)
T ss_pred hHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCC
Confidence 688899999987544443666666644444 566777899999998764 333333333333333321111100
Q ss_pred ------------------h-------c-----------------------------------------------c-----
Q 013431 334 ------------------L-------G-----------------------------------------------G----- 336 (443)
Q Consensus 334 ------------------~-------~-----------------------------------------------~----- 336 (443)
. . .
T Consensus 490 ~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~ 569 (735)
T KOG3626|consen 490 PVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNG 569 (735)
T ss_pred cccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCC
Confidence 0 0 0
Q ss_pred --------------ch-hHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHH-HHHHHHHHHHhhHHHHH
Q 013431 337 --------------FP-LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 337 --------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~ 400 (443)
.. ...++..++..+....+..|.. ..+-+.+|+++|..++|+..++ +-+|.+.+|.++|+++|
T Consensus 570 ~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~-~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 570 NGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGM-LIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred CceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcce-EEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 00 1222222233333333444444 6677888999999999998776 77788999999999998
Q ss_pred h
Q 013431 401 L 401 (443)
Q Consensus 401 ~ 401 (443)
.
T Consensus 649 ~ 649 (735)
T KOG3626|consen 649 T 649 (735)
T ss_pred h
Confidence 5
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=140.02 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhc
Q 013431 29 FSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 108 (443)
Q Consensus 29 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 108 (443)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+..++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777899999999999999999999999999999999999999999888889999999998888999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 109 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 109 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
+|.++|++++|+..+...+|.+++|.+++.+... +...+|++.++..++..++..++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999887654 456788888887777777777788864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=126.50 Aligned_cols=317 Identities=17% Similarity=0.183 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh--hhhhchhhhhHhhhcCcccc
Q 013431 36 SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG--IGLAMHGAPLYIAETCPSQI 113 (443)
Q Consensus 36 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~ 113 (443)
..+...+.++..|.++||+|||..+.+......+......+.. +| +++ +.|+. .+.......++++|....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhH
Confidence 3677788999999999999999999999998888887777765 33 333 43333 34567788889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCCCChHHHHHhhhcCCCchhhHHHHH
Q 013431 114 RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQA 192 (443)
Q Consensus 114 r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~~~ 192 (443)
|....++.......+..++|.+++.+.+.. +.-.+|.+..+..++..+ ...++||+-.. ++.+.
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~-------------~~~~~- 210 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQE-------------KERSD- 210 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCc-------------ccccc-
Confidence 999999999999999999999999988776 888888888888887765 45578886420 00000
Q ss_pred HHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCch-hhHhhHHHHH
Q 013431 193 ISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP-SVLYYAGPIL 271 (443)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 271 (443)
...++... +..... ............-.+|....+.+...+.......+.. .. +.++
T Consensus 211 ----~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~----~~yl 268 (463)
T KOG2816|consen 211 ----ATLRELTP-GSLDSS-------------HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVL----LLYL 268 (463)
T ss_pred ----ccccccCC-Ccccch-------------hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEE----EEEE
Confidence 00000000 000000 0000000111111122223333322233333322221 11 1223
Q ss_pred Hh-cCCCCchhHHHHHHHHHHHHHHHHHHHH-HhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013431 272 QS-AGFSAAADATRVSVVIGVFKLVMTWIAV-AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYV 349 (443)
Q Consensus 272 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (443)
+. .+.+. .+.+.+.+..+....++..+.. .+...++.|+....+...-.......++. +..+...... . .
T Consensus 269 ~~~f~w~~-~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~-v-~ 340 (463)
T KOG2816|consen 269 KAKFGWNK-KEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAG-V-V 340 (463)
T ss_pred eeecCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHH-H-H
Confidence 33 45555 7777777778888888887776 67777888887777777777777776653 2233322222 2 2
Q ss_pred HHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 013431 350 GCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 402 (443)
........|...+..+...+++++|++.++...+..+...++|.+.+.+...+
T Consensus 341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 23333444555578888889999999999999999999999999999886543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=129.43 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=128.4
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 96 (443)
.+++++|.++.+.+++.+...+...++.+++|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35577899999999998888888888999999999999999988887766666555555677888888899999888887
Q ss_pred hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCC
Q 013431 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 169 (443)
Q Consensus 97 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 169 (443)
..+....+..|.+| ++|++++++++...++|..+++.+++.+.+.. +|+..|++.++..++..+..++.||
T Consensus 322 ~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 322 LGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 77777888899888 46999999999999999999999999988877 8999999988888887777776654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=128.67 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHhhhhhhhchhh
Q 013431 26 FRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRLLYGLGIGLAMHGA 101 (443)
Q Consensus 26 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~ 101 (443)
.++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999999999999999999999999988877666632 34667888999999999888999
Q ss_pred hhHhhhcCcccchhhHHHHHH-HHHHHHHHHHHHhhhcccCCcc-----chHHHHhhhhHHHHHHHHHH-hcCCCC
Q 013431 102 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGM-WSLPPS 170 (443)
Q Consensus 102 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~-----~wr~~f~~~~~~~~~~~~~~-~~~~es 170 (443)
..++.|++|+++|++++++.+ ...++|..+||++++++.+..+ ||+..|.+.++..++..++. ++++|+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999997 6789999999999999887642 69999999888877765544 456665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=125.22 Aligned_cols=152 Identities=34% Similarity=0.457 Sum_probs=139.3
Q ss_pred cchhhhhh-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 013431 15 RPSLVAQL-GSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKR-ELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 92 (443)
Q Consensus 15 ~p~i~~~~-~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 92 (443)
.|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 277 (352)
T cd06174 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGF 277 (352)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444554 899999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
+.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+.+.. +|+..+++.+++.++..+..+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999999999999999999988877 99999999999888877665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=114.42 Aligned_cols=237 Identities=15% Similarity=0.155 Sum_probs=156.3
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLA 97 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 97 (443)
+-+++|.+..|++.+....+...++..++.|.++||+|||+.-+..+++.+++++ +-..++++.++++|++.|++.+..
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999886 456689999999999999999999
Q ss_pred chhhhhHhh-hc----CcccchhhHHHHHH-HHHHHHHHHHHHhhhcccCCcc-chHHHHhhhhHHHHHHHHHHh-cCCC
Q 013431 98 MHGAPLYIA-ET----CPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMW-SLPP 169 (443)
Q Consensus 98 ~~~~~~~i~-~~----~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~-~~~e 169 (443)
+.+-.++.. |. +|++..+..++... ...++-.+.+.+++.++.+..+ |-..+|....+..++..+... ..+|
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 998888663 33 22222233333333 2333444555555655555441 336788887777776655443 3444
Q ss_pred ChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHH
Q 013431 170 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 249 (443)
Q Consensus 170 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (443)
++. +..+..+ ..++.+..++.+.+||+.+.+-.
T Consensus 219 Nyg---------------------------------~~~~~~~------------~~~~~~~a~~~i~~d~ril~LG~-- 251 (354)
T PF05631_consen 219 NYG---------------------------------DTSSSSS------------LSGSFREAWRAILSDPRILLLGL-- 251 (354)
T ss_pred cCC---------------------------------Ccccccc------------hHHHHHHHHHHHHcCchhHHHHH--
Confidence 321 0000000 00011123455666776555444
Q ss_pred HHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013431 250 GLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 306 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 306 (443)
...+.....+..+..|.|.+- ..+.....|++...+.++.++|+.+..++..+
T Consensus 252 -~qslFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 252 -IQSLFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred -HHHHHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444445566777764 22222467899999999999999988765554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=126.71 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=132.4
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.|.+.++.|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.....++.++..+.++.+.+.+..++.|++.
T Consensus 243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 322 (406)
T PRK11551 243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFV 322 (406)
T ss_pred HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 46677788999999999999999999999999999999999999998887777777777777888888888888999988
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCC
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.+...+|...++......++..+..+++.
T Consensus 323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999999999999888765677777777666666555555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-13 Score=120.74 Aligned_cols=175 Identities=21% Similarity=0.189 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 325 (443)
.+...+..|..........-.+|.+-++.+.+. ..+|...+.+..+..++.++...+.||++||++++....+..++-+
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~-~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~ 93 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSE-GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 333334444444444557778899999999987 8899999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Q 013431 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAE 405 (443)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 405 (443)
+..+. .++..+...=+..+.....+.++..+...++.|+++|+++.+++.....+...+|.++..++-|.+||+
T Consensus 94 l~alA------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR 167 (394)
T COG2814 94 LSALA------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR 167 (394)
T ss_pred HHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence 77762 344444444444444444555566688999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhccc
Q 013431 406 NIFLLFAAIAFLAVLFIVRTVP 427 (443)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~ 427 (443)
..|+..+++.++..+..+...|
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998888888
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=128.20 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=128.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhh
Q 013431 23 GSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 102 (443)
Q Consensus 23 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 102 (443)
+.+..+.|++.+...++..++.+++|++.||+|||+.+..+.++.+++..+.++++|.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667889999999999999999999999999999999999999999989999999999999999999999988888888
Q ss_pred hHhhhcCcccchhhHHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCCCC
Q 013431 103 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPS 170 (443)
Q Consensus 103 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 170 (443)
.++.|.+|++.|+...+. ++....+|.++++.+.+++.+.. |||..|...+++.++..++. +.+++.
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999988887655 67788999999999999999887 89999999888777655443 344443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-12 Score=114.64 Aligned_cols=357 Identities=15% Similarity=0.133 Sum_probs=220.7
Q ss_pred CCCCcchhhhh-hcchhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 013431 11 SHCSRPSLVAQ-LGSTFRLFS-LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 88 (443)
Q Consensus 11 ~~~~~p~i~~~-~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 88 (443)
+-.-.|.+.+. .|+|.+|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.++...+-+..+
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~ 102 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF 102 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 33445666665 799998864 6777777788899999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-cchHHHHhhhhHHHHHHHHHHhcC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
+.|++.+ ...+-.+++-...|+++-.++.+...++.-+|..++.++|..+.... .+.+...++......+..+..+++
T Consensus 103 ~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 103 FYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999987 47788899999999999999999999999999999999988876632 256666667666666666677778
Q ss_pred CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccc-------cccccchhhhccCC
Q 013431 168 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD-------EKSEGSFLEVFQGP 240 (443)
Q Consensus 168 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 240 (443)
|..++-..-++.... +.+ ..+.+.+..++.+.........+...+ ..-...+++..++|
T Consensus 182 P~~~~S~~f~r~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~ 247 (412)
T PF01770_consen 182 PMPKRSLFFHRKPPA-----EQD---------ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNP 247 (412)
T ss_pred CCCCcccceeccCcc-----ccc---------cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCc
Confidence 775542211100000 000 000000000000000000000000000 01123455666777
Q ss_pred chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhH
Q 013431 241 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA--GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 318 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 318 (443)
.+.... +.+....+++.....|...+.++. ........|..-....+.+.++.+..|++..++.+..-+..+..
T Consensus 248 ~ll~WS----lWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~ 323 (412)
T PF01770_consen 248 RLLLWS----LWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVF 323 (412)
T ss_pred hHHHHH----HHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHH
Confidence 655544 444444445555777777777776 12222567777888888888888999998555555433333333
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHH
Q 013431 319 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 390 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 390 (443)
....+.+++.... .++.+......+++...+..... +...-++.....+.-|...|+.++...+-..+
T Consensus 324 S~l~a~~L~lm~~---t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 324 SLLQAGLLFLMSF---TGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 2222222222211 23445555555555555554333 33233444445677788888877665544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=126.49 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=127.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGL 92 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~ 92 (443)
.++..++++.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+.+++.++..+.++. ..++...++.|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (377)
T TIGR00890 228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFF 307 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999999999999999998888887776643 345566788888
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHH
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 160 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~ 160 (443)
+.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.. ||++.|.+.++..++.
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTS 374 (377)
T ss_pred HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHh
Confidence 888888888889999999999999999999999999999999999988877 8999999888776654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-13 Score=123.70 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=129.5
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 96 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 96 (443)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+..+..+......+.++.+.+.+.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999998888888888999999999999999999888777666666666678888888899999999998
Q ss_pred hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCC
Q 013431 97 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 169 (443)
Q Consensus 97 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 169 (443)
..+....++.|..|+ +|+++.++.+....+|..++|.+++.+.+.. ||+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence 888888999998875 5679999999999999999999999988877 8999999998888877776666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=125.71 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHH
Q 013431 243 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 322 (443)
|...+...+.++..........+..|.+.++.+.+. .+.++..+...++..++.+..|++.||+|||+.+..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 334444444444444444456666777777777776 8899999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH--
Q 013431 323 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-- 400 (443)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-- 400 (443)
+.....+. ++.. .+...-++.+.......+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+
T Consensus 86 ~~~~~~~~-----~~~~-~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 86 ASTATMFA-----TGPE-SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHHHHh-----cCHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77666542 2222 233333334444444445555778999999999999999999999999999999998874
Q ss_pred ----hhccchhhhHHHHHHHHHHHHhhhccccCC
Q 013431 401 ----LLGAENIFLLFAAIAFLAVLFIVRTVPETK 430 (443)
Q Consensus 401 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (443)
..||+..|.+.++..++...+.+++.||++
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 368999999887777766665666666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=125.53 Aligned_cols=147 Identities=23% Similarity=0.224 Sum_probs=126.9
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhch
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 99 (443)
++.|. ++.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+
T Consensus 244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 321 (399)
T PRK05122 244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP 321 (399)
T ss_pred HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence 34444 3456677888889999999999999999999999999988888888888888988888999999999998888
Q ss_pred hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCC
Q 013431 100 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 169 (443)
Q Consensus 100 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 169 (443)
.....+.|..|+++|+++.++++....+|..+++.+.+.+.+.. ||+..|++.++..++..+..+++++
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888889999999999999999999999999999999988877 8999999988888777666555544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=123.73 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=122.0
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
.....|.+.++.+.+. .+.++..+...++..++.+..|++.||+|||+.+..+..+..++.+..... ++.+..+
T Consensus 28 ~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ 101 (390)
T PRK03545 28 PVGLLSDIAQSFHMQT-AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----WNFTVLL 101 (390)
T ss_pred HHcchHHHHhHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----ccHHHHH
Confidence 3345688888888876 888999999999999999999999999999999999888777776665542 2233333
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHh
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 422 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 422 (443)
+ .-+..+.......+...++..|.+|+++|++++|+......++..++|.+.+.+.+..||+..|++.+++.++.....
T Consensus 102 ~-~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 102 I-SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 2 223333333333445557788999999999999999999999999999999999999999999999888777666555
Q ss_pred hhccccC
Q 013431 423 VRTVPET 429 (443)
Q Consensus 423 ~~~~~~~ 429 (443)
....|+.
T Consensus 181 ~~~~~~~ 187 (390)
T PRK03545 181 IKLLPLL 187 (390)
T ss_pred HHhCCCC
Confidence 5544543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=127.07 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=121.3
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.+..+.|.+.++.+.+. .+.++..+...++..+++++.|++.||+|||+.+..+..+..++.++.... ++.+..
T Consensus 41 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l 114 (434)
T PRK11663 41 SFNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----SSLWAF 114 (434)
T ss_pred hHHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----hHHHHH
Confidence 45677888999888876 788999999999999999999999999999999988888877777665542 222222
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
.....+...+.+.. .+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||+..|.+.+++.++..+.
T Consensus 115 ~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 115 ALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 22222222223323 34445788899999999999999999999999999999999999999999998887766655444
Q ss_pred hhhcccc
Q 013431 422 IVRTVPE 428 (443)
Q Consensus 422 ~~~~~~~ 428 (443)
..+..+|
T Consensus 194 ~~~~~~~ 200 (434)
T PRK11663 194 LCWRLRD 200 (434)
T ss_pred HHHHcCC
Confidence 4444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=125.95 Aligned_cols=163 Identities=20% Similarity=0.072 Sum_probs=123.8
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhH
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 340 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (443)
.......|.+.++.+.++ .+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+..... ++.+.
T Consensus 22 ~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~ 95 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPA-SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----NNIET 95 (385)
T ss_pred HHhcccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHH
Confidence 344456677788888876 789999999999999999999999999999999988877777766665542 22222
Q ss_pred HHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHH
Q 013431 341 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 420 (443)
+....+..+.......+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.++..++..+
T Consensus 96 -~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 96 -LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred -HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 2223333333333333445578899999999999999999999999999999999999999999988888877777666
Q ss_pred HhhhccccCC
Q 013431 421 FIVRTVPETK 430 (443)
Q Consensus 421 ~~~~~~~~~~ 430 (443)
..+...||++
T Consensus 175 ~~~~~~~~~~ 184 (385)
T TIGR00710 175 LIFFILPETL 184 (385)
T ss_pred HHHHhCCCCC
Confidence 5555555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=127.22 Aligned_cols=172 Identities=18% Similarity=0.152 Sum_probs=126.3
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
+..+...........+.|.+.++.+.+. .+.++......++..++.++.|+++||++||+.+..+..+..++.++....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
T TIGR00895 24 LIMLMDGYDLAAMGFAAPAISAEWGLDP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA 102 (398)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333446667788888888776 788899999999999999999999999999999888877777666555432
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
+ +...+....++.+.......+...++..|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+
T Consensus 103 -----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 103 -----T-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred -----c-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 2 2222333333333333344455568889999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhhccccC
Q 013431 411 FAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~ 429 (443)
.+++..+...+.....+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred hhhHHHHHHHHHHHhCCCC
Confidence 7666665555555555543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-13 Score=127.55 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=124.8
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHH--HHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL--GRKRELII--AAVLYALGALTTAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 90 (443)
.|.+.+++|.+..+.+++.+...++..+++++.|+++||. ++|+...+ +..+.+++.+++.+.++++.+++.+++.
T Consensus 264 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~ 343 (455)
T TIGR00892 264 LVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFF 343 (455)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 3556678899999999999999999999999999999973 34443333 3444455556667788999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 162 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~ 162 (443)
|++.+...+...+++.|.+|++++++.+++++....+|.++||.+++.+.+..++|++.|++.++..++..+
T Consensus 344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988775799999998887665544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-13 Score=123.06 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=120.9
Q ss_pred HhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHH
Q 013431 264 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVS 343 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (443)
....|.+.++.+.++ .+.++..+...++..+++++.|++.||+|||+.+..+..+.+++.+..... ++.+..+
T Consensus 40 ~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~- 112 (394)
T PRK10213 40 VSLLTPMAQDLGISE-GVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----NSFSLLL- 112 (394)
T ss_pred HhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----ChHHHHH-
Confidence 345677788888876 788888889999999999999999999999999998888887766665442 2233333
Q ss_pred HHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhh
Q 013431 344 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 423 (443)
..-+..+.......+....++.|.+|+++|+++.++.....+++..++|.+.+.+.+..||+..|++.+.+.++..+...
T Consensus 113 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 113 IGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344555678889999999999999999999999999999999999999999999888776665554444
Q ss_pred hccccC
Q 013431 424 RTVPET 429 (443)
Q Consensus 424 ~~~~~~ 429 (443)
...||+
T Consensus 193 ~~~p~~ 198 (394)
T PRK10213 193 KSLPSL 198 (394)
T ss_pred HHCCCC
Confidence 444553
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=121.97 Aligned_cols=185 Identities=15% Similarity=0.028 Sum_probs=129.3
Q ss_pred chhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCce
Q 013431 232 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 311 (443)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 311 (443)
+++.+.+++.++...+...+..+.. .......|.+.++.+.+. .+.++......++..+++++.|+++||++||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~-~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~ 83 (417)
T PRK10489 9 DLSLLKTHPAFRAVFIARFISIFGL----GLLGVAVPVQIQMMTGST-LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKK 83 (417)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCce
Confidence 3444556777776665544444433 345667788888877755 78999999999999999999999999999999
Q ss_pred EEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHH
Q 013431 312 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 391 (443)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 391 (443)
.+..+..+.+++...+....... .+....+....+..+.......+.......|..|+++|+++.++.+....+|..++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 162 (417)
T PRK10489 84 LILLARGTCGLGFIGLALNAFLP-EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS 162 (417)
T ss_pred EEEehHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence 99988776666655543221111 12222222232322222222233344778899999999999999999999999999
Q ss_pred HHhhHHHHHhhccchhhhHHHHHHHHHHHHh
Q 013431 392 TFAFSPLKELLGAENIFLLFAAIAFLAVLFI 422 (443)
Q Consensus 392 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 422 (443)
|.+.+.+.+..|+++.+.+.++..++..+..
T Consensus 163 ~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 163 PALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998898888877666655554433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=122.58 Aligned_cols=160 Identities=12% Similarity=0.036 Sum_probs=116.0
Q ss_pred hhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchh
Q 013431 261 PSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 339 (443)
Q Consensus 261 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (443)
.....+.|.++++ .|.+. .+.++..+...+..+++++..|+++||+|||+.+..+.....++.+.+.+. ++.+
T Consensus 24 ~~~~~~l~~~l~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~ 97 (395)
T PRK10054 24 GATLPFMTIYLSRQYSLSV-DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNVT 97 (395)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHHH
Confidence 3455666666654 57666 889999999999999999999999999999999888777776666555442 2222
Q ss_pred HHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHH
Q 013431 340 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 419 (443)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 419 (443)
..+....+. +.......+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .||+..|...+++.++..
T Consensus 98 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~ 175 (395)
T PRK10054 98 LVVLFFALI-NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPL 175 (395)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHH
Confidence 222222222 222223344555778899999999999999999999999999999998875 689899988777776665
Q ss_pred HHhhhcccc
Q 013431 420 LFIVRTVPE 428 (443)
Q Consensus 420 ~~~~~~~~~ 428 (443)
+...+..++
T Consensus 176 i~~~~~~~~ 184 (395)
T PRK10054 176 VFIQIWVQR 184 (395)
T ss_pred HHHHHHHhc
Confidence 544443433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=122.64 Aligned_cols=148 Identities=17% Similarity=0.054 Sum_probs=115.4
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHhhhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT--TAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~--~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.+++++|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+ ....++.+...+.+++.|++.
T Consensus 284 yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 363 (467)
T PRK09556 284 YAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV 363 (467)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 456779999999999999999999999999999999999998877655444433322 233456767778888888654
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHH-HHHHHHHhhhcccC------------CccchHHHHhhhhHHHHHHH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQIN------------AVGGWRYMYGLSAPLALLMG 161 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~------------~~~~wr~~f~~~~~~~~~~~ 161 (443)
............|.+|+++|+.+.|+.+....+ |..++|.+.|++.+ .. +|+..|++..+..++..
T Consensus 364 ~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~ 442 (467)
T PRK09556 364 FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAGTFAALDIAAIGCI 442 (467)
T ss_pred hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHHHHHHHHHHHHHHH
Confidence 333333345677999999999999999998886 77999999999888 34 79999988877777665
Q ss_pred HHHh
Q 013431 162 IGMW 165 (443)
Q Consensus 162 ~~~~ 165 (443)
+..+
T Consensus 443 ~~~~ 446 (467)
T PRK09556 443 CLMA 446 (467)
T ss_pred HHHH
Confidence 5444
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=122.12 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=126.3
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLA 97 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 97 (443)
..++.+.+ +.++..+.+.++..+++++.|++.||+||||.+..+..+.+++.++..+.++.+.+++.+++.|++.+..
T Consensus 242 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 319 (392)
T PRK12382 242 YFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI 319 (392)
T ss_pred HHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence 33444544 3566677788888999999999999999999999999999998888888889888889999999999988
Q ss_pred chhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh
Q 013431 98 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 98 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 165 (443)
.+...+.+.|.+|+++|+++.++.+....+|..++|.+.+++.+.. ||+..|.+.+...++..+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999998887 899999998888777665544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-13 Score=123.26 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=124.3
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
+....|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+..+..++....... ++.+. +
T Consensus 13 ~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~-~ 85 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSA-AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----GAYVS-L 85 (399)
T ss_pred hhHhHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----cCHHH-H
Confidence 5556677777788776 788999999999999999999999999999999998887777776666542 22233 3
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHh
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 422 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 422 (443)
....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+...++..++..+..
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLW 165 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 33333333334444555568899999999999999999999999999999999999999999999988887777666655
Q ss_pred hhccccC
Q 013431 423 VRTVPET 429 (443)
Q Consensus 423 ~~~~~~~ 429 (443)
....+++
T Consensus 166 ~~~~~~~ 172 (399)
T TIGR00893 166 LKFIPDP 172 (399)
T ss_pred hheecCC
Confidence 5555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=115.36 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=133.6
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.+..-.|.+.++.+++. .+.+.+.+.+.+..-++.++.|.++||.+.|+.+..++++.++..+++++. +....
T Consensus 47 nF~~a~p~l~e~~~lsk-~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------~s~~~ 119 (448)
T COG2271 47 NFNLAMPALIEDGGLSK-TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------PSLFL 119 (448)
T ss_pred hHhhccHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------hHHHH
Confidence 35666788888877776 899999999999999999999999999999999999999999999999874 23444
Q ss_pred HHHHHHHHH-HHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhh--HHHHHhhccchhhhHHHHHHHHH
Q 013431 342 VSALLLYVG-CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF--SPLKELLGAENIFLLFAAIAFLA 418 (443)
Q Consensus 342 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~ 418 (443)
+.++..+.+ +-+.+++|.. ..+..-+|+++||+..++.|+..++|+++.|.+. +.+.++.+|+..|+.-++++++.
T Consensus 120 ~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiv 198 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIV 198 (448)
T ss_pred HHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 444444444 4444555444 7788889999999999999999999999999999 99999999999999999999988
Q ss_pred HHHhhhccccC
Q 013431 419 VLFIVRTVPET 429 (443)
Q Consensus 419 ~~~~~~~~~~~ 429 (443)
.++.++..+++
T Consensus 199 al~~~~~~rd~ 209 (448)
T COG2271 199 ALILLFLLRDR 209 (448)
T ss_pred HHHHHHHhCCC
Confidence 88877776654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=118.83 Aligned_cols=147 Identities=13% Similarity=0.005 Sum_probs=131.7
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 95 (443)
|...+|+|.++.+.|.+.+...++..++.++++++.||+|+|+.+.++.++..+...+.++++|.+.+++.+++.|++.+
T Consensus 229 ~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~ 308 (382)
T TIGR00902 229 AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFA 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhhhHhhhcCcccchhhHHHHHH-HHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh
Q 013431 96 LAMHGAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 165 (443)
...+....++.+. |+++|++..++++ ...++|..+++.++|++.+.. |+ ..|+..+.++++..++..
T Consensus 309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999998 9899999999986 578899999999999999988 76 667777777766554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=121.77 Aligned_cols=168 Identities=17% Similarity=0.083 Sum_probs=123.5
Q ss_pred HHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhc
Q 013431 256 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 335 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (443)
...+........|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+.....++.......
T Consensus 15 ~~~~~~~~~~~lp~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----- 88 (392)
T PRK10473 15 YPAGIDMYLVGLPRIAADLNASE-AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----- 88 (392)
T ss_pred HHHHHHHHhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----
Confidence 33333445567888888888876 778888899999999999999999999999999888877777666655431
Q ss_pred cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHH
Q 013431 336 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 415 (443)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 415 (443)
++........ +..+.......+..+.++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+.+.+++.
T Consensus 89 ~~~~~~~~~~-~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~ 167 (392)
T PRK10473 89 ETSSLFLAGR-FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG 167 (392)
T ss_pred CcHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 2222222222 222322222333455788899999999999999999999999999999998888889988888888777
Q ss_pred HHHHHHhhhccccCC
Q 013431 416 FLAVLFIVRTVPETK 430 (443)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (443)
++..++.....+|++
T Consensus 168 ~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 168 ILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHcCCCC
Confidence 776665555555543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-12 Score=118.03 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=124.5
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.|...++.|.+.++.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... + ........++.|++.
T Consensus 223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~ 299 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAG 299 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHH
Confidence 4666777899999999999999999999999999999999999999988888777665443 2 234455778888887
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 166 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 166 (443)
....|...+.+.|..|+++++...+......++|..+||.+++++.++. +|++.|.+.+...++..+..+.
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999888888888888899999999999999998887 8999999988888766555444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-13 Score=127.87 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=129.3
Q ss_pred HHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (443)
+.............|.+.++.+.+. .+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 87 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc---
Confidence 3333333456677888888888776 788899999999999999999999999999999988887777776665532
Q ss_pred hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHH
Q 013431 334 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA 413 (443)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 413 (443)
+ +...+....+..+.......+....++.|.+|+++|+++.++......+|..++|.+.+.+.++.||++.|++.+.
T Consensus 88 --~-~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~ 164 (485)
T TIGR00711 88 --P-NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP 164 (485)
T ss_pred --C-CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence 2 2333333334444444444556668889999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHhhhccccC
Q 013431 414 IAFLAVLFIVRTVPET 429 (443)
Q Consensus 414 ~~~~~~~~~~~~~~~~ 429 (443)
+.++..++..+..+++
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 165 IGIIVVVVAFFILPRD 180 (485)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 7766665555555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=119.62 Aligned_cols=162 Identities=14% Similarity=0.039 Sum_probs=122.5
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
......|.+.++.|.+. .+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++.... ++.+..
T Consensus 21 ~~~~~l~~~~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----~~~~~l 94 (382)
T PRK10091 21 GIMGVLTELAHDVGISI-PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----SSYLML 94 (382)
T ss_pred HHHhChHHHHHHcCCCH-HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----CcHHHH
Confidence 35567788888888876 778999999999999999999999999999999998888887777665542 233333
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
.+.- ++.+.......+.......|..|+++|+++++.......++..++|.+.+.+.+..||+..|.+.+.+.++..+.
T Consensus 95 ~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 95 AIGR-LVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHH-HHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 3333 333332222233344667888998899999999998899999999999999999899999999888877666655
Q ss_pred hhhccccCC
Q 013431 422 IVRTVPETK 430 (443)
Q Consensus 422 ~~~~~~~~~ 430 (443)
.....||.+
T Consensus 174 ~~~~lp~~~ 182 (382)
T PRK10091 174 IYFWVPDIR 182 (382)
T ss_pred HHHhCCCCC
Confidence 555556543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=119.85 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHH
Q 013431 242 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 321 (443)
.|+......+..+.............|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTT-VDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444445555554455556677788888888876 788999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 013431 322 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 401 (443)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 401 (443)
++.+..... ++.+. +....++.+.......+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+.
T Consensus 89 ~~~~~~~~~-----~~~~~-l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 89 AGTLACGFA-----PGYIT-MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHh-----ccHHH-HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766655442 22222 333333333333334445557888999999999999999999999999999999998887
Q ss_pred hc--cchhhhHHHHHHHHHHHHhhhccccC
Q 013431 402 LG--AENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 402 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
.+ |+..+.+.+...++. ++.....||+
T Consensus 163 ~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred cCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 76 777776654444333 3333344553
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=124.79 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=114.6
Q ss_pred cchhh-hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHh
Q 013431 15 RPSLV-AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRLLYG 91 (443)
Q Consensus 15 ~p~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G 91 (443)
.|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+..+..+..++.... ++.+.+.+..++.+
T Consensus 298 lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (496)
T PRK03893 298 LPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQ 377 (496)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 35555 5899999999999999999999999999999999999999988877766665544433 34444555555554
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHH
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 159 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~ 159 (443)
.......+...+++.|.+|+++|++++++......+|..+||.+++.+.+.. ||+..+...+....+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSFSLTF 444 (496)
T ss_pred HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Confidence 4444455667788999999999999999999999999999999999998887 899887665544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=117.95 Aligned_cols=160 Identities=18% Similarity=0.011 Sum_probs=119.6
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
......|.+..+.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++.............+.+.
T Consensus 17 ~~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 94 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSA-SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQ- 94 (365)
T ss_pred HHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH-
Confidence 35556677777777665 7889999999999999999999999999999999888777666666555432211112233
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
+....+..+.......+...++..|..|+++|+++.++.+....+|..++|.+.+.+.+..||+..++..++..++..+.
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455556889999999999999999999999999999999999999999998888777666555444
Q ss_pred hh
Q 013431 422 IV 423 (443)
Q Consensus 422 ~~ 423 (443)
..
T Consensus 175 ~~ 176 (365)
T TIGR00900 175 IV 176 (365)
T ss_pred HH
Confidence 33
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=120.87 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=121.1
Q ss_pred hHhhHH-HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 263 VLYYAG-PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 263 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.....| .+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.....+ . ++.+ .
T Consensus 15 ~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~----~~~~-~ 87 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-A----SNFW-L 87 (352)
T ss_dssp HHHHHH-HHHCCSTTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-H----CCHH-H
T ss_pred HHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-h----hhHH-H
Confidence 455566 5556667666 88999999999999999999999999999999888888887777444332 1 2333 3
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+++.+++.++..++
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 44444444444444555666889999999999999999999999999999999999998889999999999888887764
Q ss_pred hhhccc
Q 013431 422 IVRTVP 427 (443)
Q Consensus 422 ~~~~~~ 427 (443)
.....+
T Consensus 168 ~~~~~~ 173 (352)
T PF07690_consen 168 FILFLP 173 (352)
T ss_dssp HHCCC-
T ss_pred Hhhhhh
Confidence 333333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.4e-12 Score=117.96 Aligned_cols=173 Identities=9% Similarity=-0.017 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHH
Q 013431 243 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 322 (443)
++......+..+.............|.+.++.+.+. .+.++..+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPV-SSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333333333333333446667788888888876 7888889999999999999999999999999998887777666
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH-h
Q 013431 323 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-L 401 (443)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~ 401 (443)
+..+.... ++.+.......+...+.+ ...+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ .
T Consensus 85 ~~~l~~~~-----~~~~~~~~~~~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 158 (394)
T PRK03699 85 AVAGLMFS-----HSLALFSIAMFVLGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS 158 (394)
T ss_pred HHHHHHHc-----chHHHHHHHHHHHHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66655542 222222322233333333 2333445778899999999999999888888899999999888765 4
Q ss_pred hccchhhhHHHHHHHHHHHHh
Q 013431 402 LGAENIFLLFAAIAFLAVLFI 422 (443)
Q Consensus 402 ~g~~~~~~~~~~~~~~~~~~~ 422 (443)
.||+..|...+++.++..++.
T Consensus 159 ~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 159 IEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 689999988777666554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=120.77 Aligned_cols=137 Identities=20% Similarity=0.271 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhc
Q 013431 29 FSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 108 (443)
Q Consensus 29 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 108 (443)
.+.+.+...++..++.+.+|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+.+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46667777888889999999999999999999999988888888888888899999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc
Q 013431 109 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 166 (443)
Q Consensus 109 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 166 (443)
.|+++|++.+++......+|..+||.+++.+.+.. ||+..|++.++..++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877 8999999998888877665543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=123.20 Aligned_cols=178 Identities=15% Similarity=0.061 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHH
Q 013431 245 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 324 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 324 (443)
.....++..+......+....-.|.+.++.+.+. .+.++....+.++...+.+..|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~-~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASG-NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3444444445444444567777899988887765 678899899999999999999999999999999999888888777
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecc-cCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 013431 325 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
+..... ++.+..+..-.+.+.+. ....+.....+.+. .|+++|+++.|+......+|..++|.+.+.+.++.|
T Consensus 86 ~~~~~a-----~~~~~li~~r~l~G~g~-~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 86 LAAAFS-----PTASWLIATRALLAIGA-AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHc-----CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 766542 23333333323333332 23333333444444 467899999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHhhhccccC
Q 013431 404 AENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
|++.|++...+.++..++.....|++
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999988777777666655655554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-12 Score=119.73 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=110.1
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
....+.|.+.++.+.+. .+.+...+...++..++.++.|+++||+|||+.+..+.+..+++.++.... .+....
T Consensus 54 ~~~~~~~~l~~~~gls~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~l 127 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTK-SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATGF 127 (476)
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHHH
Confidence 45556778888888876 677888888888999999999999999999998887776666665554432 222222
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH---------hhccchhhhHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---------LLGAENIFLLFA 412 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~~ 412 (443)
.... ++.+.......+. ..++.|.+|+++|++++|+.+...++|..+++.+.+.+.+ ..||+..|.+.+
T Consensus 128 ~~~r-~l~G~~~~~~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 128 IAVR-FFIGFSLATFVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHH-HHHHHHHHhhHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 2222 2222222223332 2467899999999999999988888888888776655432 247999999888
Q ss_pred HHHHHHHHHhhhccc
Q 013431 413 AIAFLAVLFIVRTVP 427 (443)
Q Consensus 413 ~~~~~~~~~~~~~~~ 427 (443)
++.++..+..+++.+
T Consensus 206 ~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 206 LLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHHHHHHHcC
Confidence 877766655554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=118.70 Aligned_cols=183 Identities=18% Similarity=0.166 Sum_probs=128.0
Q ss_pred chhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHH
Q 013431 241 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 320 (443)
+.+...+...+..+........+....|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+....
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34444444444444433333445555677778888776 77888889999999999999999999999999988877776
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013431 321 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 400 (443)
.++....... ++.+..+ ...++.+.......+.....+.|.+|+++|.++.++......++..++|.+.+.+.+
T Consensus 89 ~~~~~~~~~~-----~~~~~l~-~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 162 (406)
T PRK15402 89 ILTCLAILLA-----QSIEQFT-LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH 162 (406)
T ss_pred HHHHHHHHHH-----ccHHHHH-HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555432 2222222 222222222222334445677899999999999999888888899999999999999
Q ss_pred hhccchhhhHHHHHHHHHHHHhhhccccCC
Q 013431 401 LLGAENIFLLFAAIAFLAVLFIVRTVPETK 430 (443)
Q Consensus 401 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (443)
..+|+..+++.+++.++..+..+...||++
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 163 VLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 889999998888877776665555556543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=121.36 Aligned_cols=164 Identities=17% Similarity=0.094 Sum_probs=122.1
Q ss_pred hCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccc
Q 013431 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 337 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (443)
........+.|.+.++.|.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+..... ++
T Consensus 24 ~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~ 97 (471)
T PRK10504 24 LDTTIVNTALPSMAQSLGESP-LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-----GT 97 (471)
T ss_pred HhHHHHHHHHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-----CC
Confidence 333456778899999988876 777888888888999999999999999999999887766666655544321 22
Q ss_pred hhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHH
Q 013431 338 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL 417 (443)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 417 (443)
.+..+ ...++.+.......+....++.|.+|+++|+++.|+.+....++..++|.+.|.+.+..||++.|.+......+
T Consensus 98 ~~~l~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l 176 (471)
T PRK10504 98 LNELL-LARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGII 176 (471)
T ss_pred HHHHH-HHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 22222 33333333333344455577889999999999999999999999999999999999999999999887776666
Q ss_pred HHHHhhhcccc
Q 013431 418 AVLFIVRTVPE 428 (443)
Q Consensus 418 ~~~~~~~~~~~ 428 (443)
..+......++
T Consensus 177 ~~~~~~~~~~~ 187 (471)
T PRK10504 177 GAIATLMLMPN 187 (471)
T ss_pred HHHHHHHhCCC
Confidence 66555544443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=118.41 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=117.0
Q ss_pred hhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 013431 265 YYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 344 (443)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (443)
--+|.+.++.+.+. ...+...+.+.++..++.++.|+++||+|||+.+..+..+..++.+..... ++....+.
T Consensus 37 p~l~~i~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~- 109 (413)
T PRK15403 37 PGIINVVRDFNADV-SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----TSMTQFLI- 109 (413)
T ss_pred cCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----CCHHHHHH-
Confidence 34455666777766 777888888899999999999999999999999888877776666555431 22223332
Q ss_pred HHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhh
Q 013431 345 LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 424 (443)
.-+..+.......+..+....|.+|++++++++++.+....++..++|.+.+.+.+..||+..|++.++..++..+..++
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222233445677889999999999999999999999999999999999889999999888877776665555
Q ss_pred ccccCC
Q 013431 425 TVPETK 430 (443)
Q Consensus 425 ~~~~~~ 430 (443)
..||++
T Consensus 190 ~lp~~~ 195 (413)
T PRK15403 190 AMPETV 195 (413)
T ss_pred hCCCCc
Confidence 556643
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-12 Score=117.54 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=116.6
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
.....|.+.++.+.++ .+.++......++..++.++.|+++||+|||+.+..+.....++.+..... ++.. .+
T Consensus 27 ~~p~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~-~l 99 (394)
T PRK11652 27 YVPAIADMARDLNVRE-GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----HSLT-VL 99 (394)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHH-HH
Confidence 3345677788888876 788999999999999999999999999999999888777766666554431 2222 22
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHh
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 422 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 422 (443)
....++.+.......+....+..|.+++++++.+.+..+....++..++|.+.+.+.+..||+..|.+.++..++.....
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 22223323222222334445667888888999999999989999999999999999998899999988777666555544
Q ss_pred hhccccCC
Q 013431 423 VRTVPETK 430 (443)
Q Consensus 423 ~~~~~~~~ 430 (443)
....||++
T Consensus 180 ~~~~~~~~ 187 (394)
T PRK11652 180 ARWMPETR 187 (394)
T ss_pred HHhCCccC
Confidence 44556543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=118.81 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=117.2
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc--hH-H-HHHHHHHHHh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GL-G-VLLVGRLLYG 91 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~-~-~l~~~r~l~G 91 (443)
|.+.+++|.+..+.++......+...++.++.|+++||+|||+.++.+..+.+++.++.+... +. + ....+.++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 777788888887778888888889999999999999999999999999999888877765431 21 1 2333444444
Q ss_pred hhhhh-hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhc------ccCCccchHHHHhhhhHHHHHHHHHH
Q 013431 92 LGIGL-AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF------QINAVGGWRYMYGLSAPLALLMGIGM 164 (443)
Q Consensus 92 ~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~------l~~~~~~wr~~f~~~~~~~~~~~~~~ 164 (443)
.+.+. ..|....++.|.+|+++|++++++......+|.++++.+.+. +.+.. +|+..|++.++.+++..+..
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 453 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLAALFM 453 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHHHHHH
Confidence 44443 336778999999999999999999999999999888655543 33445 88888988887777766554
Q ss_pred h-cCCCCh
Q 013431 165 W-SLPPSP 171 (443)
Q Consensus 165 ~-~~~es~ 171 (443)
+ +.||+.
T Consensus 454 ~~~~~e~~ 461 (479)
T PRK10077 454 WKFVPETK 461 (479)
T ss_pred HhccccCC
Confidence 4 456643
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-12 Score=119.59 Aligned_cols=157 Identities=17% Similarity=0.079 Sum_probs=117.2
Q ss_pred hCchhhHhhHHHHHHh---cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHH
Q 013431 258 TGQPSVLYYAGPILQS---AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKI 333 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (443)
.+++....++|.++++ .|.+. .+++.......+...++.+++|+++|| +|||+.+..+..+.+++..++...
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~s~-~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--- 99 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGFSQ-EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--- 99 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence 3444567778888776 46655 789999999999999999999999999 899999999988888877766542
Q ss_pred hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccc---cchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 334 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT---RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
++...... ...+.+.......+...++..|.+|+++ |+++.++.+...++|..++|.+.+.+.++.||+..|..
T Consensus 100 --~~~~~~~~-~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 100 --IYPDLIFY-GLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred --ccHhHHHH-HHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 22222222 2222333333344455577888887654 88899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 013431 411 FAAIAFLAVLF 421 (443)
Q Consensus 411 ~~~~~~~~~~~ 421 (443)
.++..+++.+.
T Consensus 177 ~~~~~~~~~l~ 187 (475)
T TIGR00924 177 AAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHH
Confidence 77655555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=117.04 Aligned_cols=185 Identities=15% Similarity=0.082 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 325 (443)
.+...+....+..--+.+....+..-+..+.++ ...|++.....+...+++++.|++.||++|++++..|..+-.++.+
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~-s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~ 113 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISD-SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF 113 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCc-hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence 333334444333333334444455555556666 7889999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-c
Q 013431 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-A 404 (443)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~ 404 (443)
.-.+. ..++.+..+=.+.+..-..+.|+..++++|.+|.++|++++++.+....+|..+|-.+.+.+.+..+ |
T Consensus 114 ~~~fs------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 114 ASGFS------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHH------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 87763 3444455555555666667888888999999999999999999999999999988888888888777 9
Q ss_pred chhhhHHHHHHHHHHHHhhhccccCCCCCHHHH
Q 013431 405 ENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 437 (443)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
++.|...+++.++..++..++.+|.+++..++.
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 999999999999988888888877665443433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=115.74 Aligned_cols=158 Identities=17% Similarity=0.131 Sum_probs=116.9
Q ss_pred hHhhHHHHH-HhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 263 VLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 263 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
...+.+.++ ++.+.+. .+.++......+...+.+++.|+++||++||+.+..+....+++.+..... ++.+..
T Consensus 29 ~~~~~~~~~~~~~g~s~-~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----~~~~~l 102 (400)
T PRK11646 29 VFPLISIRFVDQLGWAA-VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----HEPWLL 102 (400)
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 444555554 5567665 889999999899999999999999999999999998888888777766542 223333
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
. ...+..+.......+...+++.|..|+++|+++.|+.+....+|..++|.+.+.+. ..||+..|++.+...++..++
T Consensus 103 ~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 103 W-LSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 3 33333333333344444577889999999999999999999999999999999998 678988888877776665554
Q ss_pred hhhcccc
Q 013431 422 IVRTVPE 428 (443)
Q Consensus 422 ~~~~~~~ 428 (443)
.....++
T Consensus 181 ~~~~~~~ 187 (400)
T PRK11646 181 NAWLLPA 187 (400)
T ss_pred HHHhCCc
Confidence 4444454
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=115.52 Aligned_cols=154 Identities=16% Similarity=0.073 Sum_probs=116.6
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc---c-chHHHHHHHHHHHhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---A-PGLGVLLVGRLLYGL 92 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~l~G~ 92 (443)
.+.+++|.+..+...+.....+...++.+++|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345677888877666666677777888999999999999999998887766555433322 2 334455556677788
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHH-HHHHHHHHHHHhhhcccCCc-cchHHHHhhhhHHHHHHHHHHhcCCCC
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPS 170 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~es 170 (443)
+.+...+...+++.|.+|.+.|+.+.++... +..+|..++|.+.+++.+.. ++|+..+...++.+++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888888889999999999999988888544 45589999999999987743 258888888877777776666666654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=116.39 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=112.4
Q ss_pred hhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc-CCceEEehhhHHHHHHHHHHHHHHHHhccch
Q 013431 261 PSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKILGGFP 338 (443)
Q Consensus 261 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (443)
+.+..++|.++++ .|.+. .+++...........++.+++|+++||+ |||+.+..+.++.+++.+++... ....
T Consensus 26 Yg~~~~L~~yL~~~lgls~-~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~~~ 100 (493)
T PRK15462 26 YGMRALLILYLTNQLKYDD-NHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EIHP 100 (493)
T ss_pred HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hcch
Confidence 4466778888766 46665 7788888888889899999999999999 99999988888877776554421 1111
Q ss_pred hHHHHHHHHHHHHHhhccccceeeeeecccCcc--ccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHH
Q 013431 339 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAF 416 (443)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 416 (443)
........+...+. ....+...++..|.+|++ +|.++.++.+...++|+.++|.+.+++.+..||+..|...++..+
T Consensus 101 ~~~~l~l~li~iG~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 101 SFLYLSLAIIVCGY-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179 (493)
T ss_pred hHHHHHHHHHHHhc-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 11221111221222 222343347889999875 699999999999999999999999999999999999988766555
Q ss_pred HHHHHh
Q 013431 417 LAVLFI 422 (443)
Q Consensus 417 ~~~~~~ 422 (443)
++.+..
T Consensus 180 l~li~~ 185 (493)
T PRK15462 180 AGLVIF 185 (493)
T ss_pred HHHHHH
Confidence 544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=119.20 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=121.6
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.+....|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.... + +...
T Consensus 13 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 85 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T-SLWV 85 (379)
T ss_pred hhhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h-hHHH
Confidence 45566777777778876 788999999999999999999999999999999998888877777766543 2 2223
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHH-HhhHHHHHhhccchhhhHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT-FAFSPLKELLGAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 420 (443)
+....++.+.......+...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|+..+.+.+.+.++..+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL 165 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 333333334444444556668899999999999999999999999999999 4666677777888888887777666655
Q ss_pred Hhhhcccc
Q 013431 421 FIVRTVPE 428 (443)
Q Consensus 421 ~~~~~~~~ 428 (443)
..+...++
T Consensus 166 ~~~~~~~~ 173 (379)
T TIGR00881 166 ICFLLLRD 173 (379)
T ss_pred HHheeeCC
Confidence 55555444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=113.79 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=119.0
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHHHhc-----cchHHHHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGALTTAY-----APGLGVLLVGRL 88 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~-----~~~~~~l~~~r~ 88 (443)
.|.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+....+++.+.... .++.+..++..+
T Consensus 245 ~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (402)
T TIGR00897 245 LPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAI 324 (402)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 46667889999999999999999999999999999999999988764 333333333333322 346777788899
Q ss_pred HHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
+.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+.. ||+..+++.++..++..+..+++
T Consensus 325 ~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 325 ALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 99998887655 4456677654 68999999999999999999999999999887 89999999888887776655543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-12 Score=115.59 Aligned_cols=161 Identities=13% Similarity=0.012 Sum_probs=114.5
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.+....|.+.++.+.+. .+.++..+...++..++.+..|+++||+|||+.+.........+. .... . .+ +...
T Consensus 9 ~~~~~lp~i~~~~~~s~-~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~-~---~~-~~~~ 81 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSK-EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLL-D---PF-NYEW 81 (368)
T ss_pred HHHhhHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHH-H---hc-cHHH
Confidence 35567788888888876 788999999999999999999999999998886544333332221 1111 1 01 2222
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
+...-+..+....... .......|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.+++.++..++
T Consensus 82 l~~~R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 222445788999999999999999999999999999999999999999999988887777776
Q ss_pred hhhccccCC
Q 013431 422 IVRTVPETK 430 (443)
Q Consensus 422 ~~~~~~~~~ 430 (443)
.++..||++
T Consensus 161 ~~~~lp~~p 169 (368)
T TIGR00903 161 VLAALPALP 169 (368)
T ss_pred HHHHcCCCC
Confidence 666667643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=117.46 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=112.3
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
+....|.+. +.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+.+++.+....... .......+
T Consensus 46 ~~~~~p~~~-~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 121 (438)
T TIGR00712 46 FALAMPYLV-EQGFSK-GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW--ATSSIAIM 121 (438)
T ss_pred HHhhhHHHH-HcCCCH-hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc--ccchHHHH
Confidence 444556554 456665 78899999999999999999999999999999888877777766655443210 01122222
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH-hhccchhhhHHHHHHHHHHHH
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~ 421 (443)
....+..+.......+.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.+++.++..+.
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2222222222222223333667789999999999999999999999999988776554 468999999888877776655
Q ss_pred hhhcccc
Q 013431 422 IVRTVPE 428 (443)
Q Consensus 422 ~~~~~~~ 428 (443)
.++..+|
T Consensus 202 ~~~~~~~ 208 (438)
T TIGR00712 202 AFAMMRD 208 (438)
T ss_pred HHHhccC
Confidence 5555554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-12 Score=116.99 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=122.0
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
.....|.+.++.+.++ .+.++..+...++..++.++.|+++||+|||+.+..+..+..++....... ++.....
T Consensus 10 ~~p~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~ 83 (377)
T PRK11102 10 YLPALPVIAADFGVSA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTIDQLI 83 (377)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHH
Confidence 4456677788888776 788999999999999999999999999999999988887777776666542 2222222
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHh
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 422 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 422 (443)
. ..+..+.......+...++..|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+.+.+.+.++..+..
T Consensus 84 ~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 84 Y-MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 2 233333333333344457888999999999999999999999999999999999999999999888887777766655
Q ss_pred hhccccC
Q 013431 423 VRTVPET 429 (443)
Q Consensus 423 ~~~~~~~ 429 (443)
....+|+
T Consensus 163 ~~~~~~~ 169 (377)
T PRK11102 163 FFFIPET 169 (377)
T ss_pred HHhCCcc
Confidence 5555554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=117.05 Aligned_cols=155 Identities=13% Similarity=0.059 Sum_probs=114.6
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
+..+..........+..|.+.++.+.++ .+.++..+...++..++.++.|+++||+|||+.+..+....+++.....+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 103 (426)
T PRK12307 25 LGYVFDGFDFMLIFYIMYLIKADLGLTD-MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333445556677777788776 788899999999999999999999999999999999888888777665543
Q ss_pred HHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 331 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
++.+...+ .-.+.+.......+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..||+..+++
T Consensus 104 -----~~~~~l~~-~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 -----SGVIMLTL-SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred -----hHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 22223333 333333333333444457788999999999999999999999999999999888888899888876
Q ss_pred HH
Q 013431 411 FA 412 (443)
Q Consensus 411 ~~ 412 (443)
..
T Consensus 178 ~~ 179 (426)
T PRK12307 178 GL 179 (426)
T ss_pred HH
Confidence 44
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-11 Score=113.48 Aligned_cols=155 Identities=19% Similarity=0.106 Sum_probs=111.4
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 013431 266 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 345 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (443)
..|.+.++.+.++ .+.++..+...++..++.++.|+++||++||+.+..+..+..++....... ++.+... ..
T Consensus 28 ~~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~-~~ 100 (401)
T PRK11043 28 AFKAIQADLQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----ESAAQLL-VL 100 (401)
T ss_pred hHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----cCHHHHH-HH
Confidence 3445566777765 889999999999999999999999999999999888776666665554431 2222222 22
Q ss_pred HHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhc
Q 013431 346 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
.+..+.......+....+..|.+|+++++...+..+....++..++|.+.+.+.+..||+..+.+.+++.++..+.....
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 22222222222223346678889988888898998888899999999999999999999998888877776665544444
Q ss_pred cc
Q 013431 426 VP 427 (443)
Q Consensus 426 ~~ 427 (443)
.+
T Consensus 181 ~~ 182 (401)
T PRK11043 181 KP 182 (401)
T ss_pred CC
Confidence 33
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=115.23 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=122.2
Q ss_pred cchhhhhhcchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hcc-chHHHHHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALC-GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-PGLGVLLVGRLL 89 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~l 89 (443)
.|.+.+++|.+.++.+++.. ...++..++.+++|+++||+|+|+.+.++..+.++..+.. +.. ++.+.+.+.-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 35556789999999999984 6678999999999999999999998877666555544322 333 455555656677
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 169 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 169 (443)
..++.+...+...++..+..+++.+++..++.+...++|..+++.+.|++.+.. ||+..|.+.++.+++..+...++++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666777888899999999999999999999999999999999998877 9999999988888887666655543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=117.99 Aligned_cols=156 Identities=16% Similarity=0.067 Sum_probs=123.3
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc-----cc------hHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----AP------GLGVL 83 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~------~~~~l 83 (443)
.|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+.+++.++.++ .+ +...+
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI 386 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence 46777889999988999999999999999999999999999999999998888887777662 11 23333
Q ss_pred HHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH
Q 013431 84 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 163 (443)
Q Consensus 84 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 163 (443)
....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+.+.. +|++.|++.++++++..+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~i~ 465 (481)
T TIGR00879 387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVLGLIF 465 (481)
T ss_pred HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHHHHHH
Confidence 333333333333345667777899999999999999999999999999999999988776 8999999988888777665
Q ss_pred Hh-cCCCCh
Q 013431 164 MW-SLPPSP 171 (443)
Q Consensus 164 ~~-~~~es~ 171 (443)
.+ +.||++
T Consensus 466 ~~~~~~~~~ 474 (481)
T TIGR00879 466 VYFFLPETK 474 (481)
T ss_pred HheecccCC
Confidence 54 456543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=115.99 Aligned_cols=163 Identities=16% Similarity=0.093 Sum_probs=108.5
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
+....|.+.++ +.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.+.+... .......+
T Consensus 48 ~~~~~p~l~~~-g~s~-~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVEQ-GFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAVM 123 (452)
T ss_pred HHHhhHHHHHc-CCCH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc--ccccHHHH
Confidence 44566766655 7665 88999999999999999999999999999999988888777777665554211 01122222
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHH-HHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI-VTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
.....+.+.......+.......|.+|+++|++++|+.+....+|+.+ +|.+...+....||+..|++.+.+.++..++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 222222222222233333356778889999999999999888888754 4443333333458888888877776665555
Q ss_pred hhhccccC
Q 013431 422 IVRTVPET 429 (443)
Q Consensus 422 ~~~~~~~~ 429 (443)
..+..+|+
T Consensus 204 ~~~~~~~~ 211 (452)
T PRK11273 204 AFAMMRDT 211 (452)
T ss_pred HHHHccCC
Confidence 55555543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=112.00 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=123.9
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-APGLGVLLVGRLLYGLG 93 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~~~~~~l~~~r~l~G~~ 93 (443)
.|.+.+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++..+... .++...+ .-++.|++
T Consensus 228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g 305 (393)
T PRK09705 228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLG 305 (393)
T ss_pred HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHh
Confidence 45566678999999999999999999999999999999999999999988887777665543 3332222 23466888
Q ss_pred hhhhchhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH-HhcCCCCh
Q 013431 94 IGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLPPSP 171 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~ 171 (443)
.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..++|+..|++.++.+++..+. ..+.||++
T Consensus 306 ~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 306 LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred ccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888877777777775 57899999999999999999999999999998756888888888777766554 44566654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-11 Score=110.11 Aligned_cols=145 Identities=15% Similarity=0.032 Sum_probs=124.1
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhh
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 95 (443)
|...+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+..+.+++.++.+.+++.+.+++..++.|++.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 308 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred hhchhhhhHhhhcCcccchhhHHHHHH-HHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH
Q 013431 96 LAMHGAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 163 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 163 (443)
...+....++.+. +++++++..+..+ ...++|..+||.++|.+.+.. ++ ..|+..+++.++.++.
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHH
Confidence 9999999998886 5667788888886 567788899999999999887 66 4666666666554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=114.88 Aligned_cols=143 Identities=26% Similarity=0.221 Sum_probs=115.0
Q ss_pred chhh-hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH--HHHhc--cchHHHHHHHHHHH
Q 013431 16 PSLV-AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA--LTTAY--APGLGVLLVGRLLY 90 (443)
Q Consensus 16 p~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~ 90 (443)
|.+. +++|.++.+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. ....+ .++.+.+....++.
T Consensus 243 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (394)
T TIGR00883 243 PTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGL 322 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4444 6789999999999999999999999999999999999998776554444333 22222 35677777888999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 158 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~ 158 (443)
|++.+...+...+++.|.+|+++|+++.++ .+....+|..++|.+++++.+..++|+..++.....++
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 999989999999999999999999999998 45667789999999999998887348888777665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=111.54 Aligned_cols=152 Identities=19% Similarity=0.168 Sum_probs=137.3
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHHHhc--------cchHHHHHHHH
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRK--RELIIAAVLYALGALTTAY--------APGLGVLLVGR 87 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~l~~~r 87 (443)
-++++|++..+...+.-...+...+|++++|++.||+|.| +++..+++++.+..+...+ .++.+.+.+.-
T Consensus 308 a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a 387 (477)
T PF11700_consen 308 ATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA 387 (477)
T ss_pred HHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH
Confidence 3568999999999999999999999999999999999999 8999988888666666555 67888999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
++.|+..|...+...++.+|..|+++.+..+|++....-....+||++.+.+.+..++-|+.+....++.++.+++.+++
T Consensus 388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999998887668999998888888887777776
Q ss_pred CC
Q 013431 168 PP 169 (443)
Q Consensus 168 ~e 169 (443)
++
T Consensus 468 ~~ 469 (477)
T PF11700_consen 468 DV 469 (477)
T ss_pred cc
Confidence 55
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=111.50 Aligned_cols=174 Identities=15% Similarity=0.126 Sum_probs=120.1
Q ss_pred CCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhH
Q 013431 239 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 318 (443)
+|+++.+.+...+..+... ......+...++.+.++ ...++......+...+..++.|+++||+|||+++..+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~-~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~ 76 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADN----ALLFAAIALLKELHYPD-WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG 76 (393)
T ss_pred CCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH
Confidence 3456665555444444322 23344455567777665 678899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 319 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
+.+++.+...... +. .. .-+..+.......|...+++.|.+|+++|+++.|+.+....++..++|.+.|.+
T Consensus 77 ~~~~~~~~~~~~~-----~~---~~-~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 77 IKLLGCLLMLFGI-----HP---LL-AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHHHHHHHHH-----HH---HH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655543321 11 22 222334444556667778999999999999999999999999999999999999
Q ss_pred HHhhccchhhhHHHHHHHHHHHHhhhcccc
Q 013431 399 KELLGAENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 399 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
.+.. +...+.+.+...+++.+ .....||
T Consensus 148 ~~~~-~~~~~~i~~~~~~~~~~-~~~~l~~ 175 (393)
T PRK11195 148 ADPH-AEAALAVCALIYLLAAL-FNLFIPR 175 (393)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 8864 54555444443333332 3344444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-11 Score=109.49 Aligned_cols=160 Identities=22% Similarity=0.171 Sum_probs=109.9
Q ss_pred hhhHhhHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchh
Q 013431 261 PSVLYYAGP-ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 339 (443)
Q Consensus 261 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (443)
.....+.|. +.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+...... .+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----~~~~ 92 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLST-AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----QSYS 92 (366)
T ss_pred HHhHHhhhHHHHHHhCCCH-HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----hhHH
Confidence 346667775 556677776 8889999999999999999999999999999999888888777776665421 0222
Q ss_pred HHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh----------hccchhh-
Q 013431 340 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL----------LGAENIF- 408 (443)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~- 408 (443)
... ...+..+....... ....++.|.+|+++|+++.++.....++|..+++.+.+.+.+. .+|++.+
T Consensus 93 ~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~ 170 (366)
T TIGR00886 93 VLL-LLRLFIGIAGGSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170 (366)
T ss_pred HHH-HHHHHHHHhchhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence 222 22233333333333 3347788999999999999999988888888888877766653 3677777
Q ss_pred hHHHHHHHHHHHHhhhccc
Q 013431 409 LLFAAIAFLAVLFIVRTVP 427 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~ 427 (443)
...+.+..+..++.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 171 IVPAGILLLPALLIFFVGA 189 (366)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4334444443333333333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=116.15 Aligned_cols=150 Identities=13% Similarity=-0.020 Sum_probs=113.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Q 013431 274 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ 353 (443)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (443)
.+.+. .+.+.......++..++.++.|++.||+|+|+.+..+.++..++.++..... ......+...-++.+...
T Consensus 71 ~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~~ 145 (465)
T TIGR00894 71 FKWSG-ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQGLAQ 145 (465)
T ss_pred CCCCH-HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHhc
Confidence 34444 6788899999999999999999999999999999888777666655543321 112223333444444444
Q ss_pred hccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh-ccchhhhHHHHHHHHHHHHhhhcccc
Q 013431 354 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
....+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+.. ||+..|++.++..++..++.+...++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 5555566688999999999999999999999999999999999999984 99999998888776665555444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=112.07 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=103.0
Q ss_pred hhhHhhHHHHH-HhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHHhccch
Q 013431 261 PSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 338 (443)
Q Consensus 261 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (443)
+.+..+++.++ ++.|.+. .+++..............+++|+++|| +|||+.+..+..+.+++..++.+. ...
T Consensus 38 y~~~~~l~~yl~~~lg~s~-~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-----~~~ 111 (500)
T PRK09584 38 YGLQGIMAVYLVKQLGMSE-ADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-----GHD 111 (500)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-----ccc
Confidence 34566777776 4566665 555566555555555556789999999 599999998888887776665542 111
Q ss_pred hHHHHHHHHHHHHHhhccccceeeeeecccCccc--cchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHH
Q 013431 339 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAF 416 (443)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 416 (443)
...+.......+.......+...++..|.+|++. ++.+.++.+...++|..++|.+.|++.++.||+..|.+.++...
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~ 191 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGML 191 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 2222222222233333334454577889887543 45678888999999999999999999999999999988765444
Q ss_pred HHH
Q 013431 417 LAV 419 (443)
Q Consensus 417 ~~~ 419 (443)
++.
T Consensus 192 i~~ 194 (500)
T PRK09584 192 ITV 194 (500)
T ss_pred HHH
Confidence 443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.5e-11 Score=112.12 Aligned_cols=153 Identities=14% Similarity=0.060 Sum_probs=109.1
Q ss_pred chhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHHhccc
Q 013431 260 QPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGF 337 (443)
Q Consensus 260 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (443)
++....+++.|+++ .|.+. .++.+..........+..+++|+++|| +||||.+..+..+..++.+...+.. .
T Consensus 30 ~y~~~~~l~~yl~~~lg~~~-~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~-----~ 103 (489)
T PRK10207 30 YYGVQGILAVFFVKQLGFSQ-EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL-----L 103 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence 33455555556554 66665 667777777777777778899999999 9999999999998888877766421 1
Q ss_pred hhHHHHHHHHHHHHHhhccccceeeeeecccCcc--ccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHH
Q 013431 338 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 415 (443)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 415 (443)
....+.......+.......|...+++.|.+|++ +|+.++++.+...++|..++|.+.|++.++.||+..|++.++..
T Consensus 104 ~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 104 KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 1112212222333333334445558899999877 45778999999999999999999999999999999998865443
Q ss_pred HHH
Q 013431 416 FLA 418 (443)
Q Consensus 416 ~~~ 418 (443)
.++
T Consensus 184 ~~~ 186 (489)
T PRK10207 184 IIA 186 (489)
T ss_pred HHH
Confidence 333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=107.65 Aligned_cols=163 Identities=12% Similarity=0.083 Sum_probs=106.4
Q ss_pred hHhhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 263 VLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.....+.+.+ +.+.+. .+.+++.++..+...+.++..|++.||+|.|+++..+..+..+..+...+..... .++...
T Consensus 53 ~~~l~~~~~~~~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-~~s~~~ 130 (462)
T PRK15034 53 FSAVTVNLNKIGFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-NTPFGI 130 (462)
T ss_pred HHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-CCCHHH
Confidence 4444444444 577776 7888899999999999999999999999999999888888777766655421101 123333
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH-----Hhhc-------------
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-----ELLG------------- 403 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----~~~g------------- 403 (443)
+....++.+..+..+. .....+++.+|+++||++.|+....+++|..+++.+...+. +..|
T Consensus 131 lli~r~l~Gigg~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 131 FIVIALLCGFAGANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 3333333333344343 44477889999999999999997677777766665554433 3222
Q ss_pred cchhhhHHHHHHHHHHHHhhhcccc
Q 013431 404 AENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
++++..+...+.++..++.++..++
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4445556666665655555555444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-09 Score=97.71 Aligned_cols=316 Identities=16% Similarity=0.140 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCccc
Q 013431 33 LCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 112 (443)
Q Consensus 33 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 112 (443)
.++-.....+++++.+.+.|+.|.|..++++...+..-.+..-+ +|-+.++..-.+.|+|.+..+..-..++.|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67777788899999999999999999999999988876665544 66778899999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcccCCcc-------chH-HHH----------hhhhHHHH---HHHHHHhcCCCCh
Q 013431 113 IRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GWR-YMY----------GLSAPLAL---LMGIGMWSLPPSP 171 (443)
Q Consensus 113 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-------~wr-~~f----------~~~~~~~~---~~~~~~~~~~es~ 171 (443)
.+.+..++..+....+.++|..+...+..... +-+ ..+ .+.+++.. +..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999999999999998776554432110 111 111 11111111 1111111222110
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
. .. + . +.. + ....+..+...+++++++...+......
T Consensus 215 ~-~~---------------~-------------------~------~~~-~-~~~~~~l~~~~~l~~~~~ml~L~~~f~~ 251 (461)
T KOG3098|consen 215 V-VN---------------C-------------------K------SSS-E-TSFSELLKLTFKLLKTPKMLLLFPFFFY 251 (461)
T ss_pred h-hh---------------h-------------------h------hhc-c-ccHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 0 00 0 0 000 0 0001111223445566655544444333
Q ss_pred HHHHHHhCchhhHhhHHHH--HHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc---cCCceEEehhhHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPI--LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD---LGRRPLLIGGVCGIALSLLL 326 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~ 326 (443)
..+..... ...|-..+ ....+.++....+......+++.++++...+.+.+| +|+++.+.++..+..+..++
T Consensus 252 tG~~~Sf~---~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l 328 (461)
T KOG3098|consen 252 TGLETSFW---ISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL 328 (461)
T ss_pred HHHHHHHH---HhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence 33322111 11111111 112334443556677777788888888888888765 57777777777666666555
Q ss_pred HHHHHHHhcc------------chhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHh
Q 013431 327 LSAYYKILGG------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 394 (443)
Q Consensus 327 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 394 (443)
.....+.+.+ ........+.+..+..-..++...+..+.+.+| +.|..+.++.-.-..+...++-..
T Consensus 329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhh
Confidence 5443321110 012233344444555555666666678888885 778888888877777776665544
Q ss_pred hH
Q 013431 395 FS 396 (443)
Q Consensus 395 ~g 396 (443)
..
T Consensus 408 ~~ 409 (461)
T KOG3098|consen 408 SP 409 (461)
T ss_pred hh
Confidence 43
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=109.85 Aligned_cols=148 Identities=24% Similarity=0.350 Sum_probs=134.8
Q ss_pred cchhh-hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 15 RPSLV-AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 15 ~p~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
+|.+. +++|.++...|++.+++.+|..++++..+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++
T Consensus 241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~ 320 (524)
T PF05977_consen 241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAA 320 (524)
T ss_pred hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 57665 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 163 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 163 (443)
.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+.+.. |-+..+.+.++..++..++
T Consensus 321 ~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 321 WIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 8898888777655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=105.87 Aligned_cols=147 Identities=17% Similarity=0.056 Sum_probs=114.8
Q ss_pred chhhhhhcchhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHH
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------APGLGVLLVGRL 88 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~~~~~~l~~~r~ 88 (443)
|...+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 34556789999999999888764 66778999999999999999998877665333332221 234444555566
Q ss_pred HHhhhhhhhchhhhhHhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH
Q 013431 89 LYGLGIGLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 163 (443)
Q Consensus 89 l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 163 (443)
+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+.. |++..|+..++..++..+.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHH
Confidence 67777788888888887777776 78999999999999999999999999998877 8999999888777665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=103.18 Aligned_cols=151 Identities=23% Similarity=0.194 Sum_probs=138.2
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhch
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 99 (443)
.++|++..+..++.-...+..+++++++|++.||+|.|+++..++++..+.++..-+......+.++-.+.|.+.|+...
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 48999999999999999999999999999999999999999999999999998888888888888888999999999999
Q ss_pred hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCC
Q 013431 100 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 170 (443)
Q Consensus 100 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 170 (443)
...++..+..|++|-++.+|+++.....+..+||.+.+.+.+..++-|..+....++..+..+..+.+|+.
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999999999999999999999999999999999999988887788888887777777777777777653
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=99.68 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=130.3
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEe
Q 013431 235 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 314 (443)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 314 (443)
+++.++....+++...+..+.. ....+++=-.+++.+..+ ...|......-.+.++.-++.+++++|+|+-+++.
T Consensus 366 ~~~~s~~~llff~~av~mG~g~----~lv~tFLfWHled~~~~~-~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~ 440 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGV----GLVFTFLFWHLEDLGGIK-TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY 440 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHH----HHHHHHHHHHHhhcCCcc-eeeeehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence 4566665554443333333322 234444444677777554 66677777888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHH-HHHHHHHHHH
Q 013431 315 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTF 393 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~ 393 (443)
.++.+..+-++.+... +++|..+..=.+-.......+..+. +|++...|++.++++.++.... ..+|-.+|+.
T Consensus 441 lgLa~~~~Rf~~~S~L-----~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl 514 (618)
T KOG3762|consen 441 LGLACNVGRFLYYSYL-----QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL 514 (618)
T ss_pred ehhhHHHHHHHHHHHh-----cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence 9998888887777653 4455555544555555555555555 8999999999999999998776 6788899999
Q ss_pred hhHHHHHhhccchhhhHHHHHHHHHHHHhh
Q 013431 394 AFSPLKELLGAENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 394 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 423 (443)
++|.+.+.+|.+..|.++++.+++.++...
T Consensus 515 IGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 515 IGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred hhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 999999999988889888887777665443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-11 Score=95.18 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecc
Q 013431 288 VIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI 367 (443)
Q Consensus 288 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (443)
...++.+++.+..+++.||++||+.+..+.....++.+..... ++.+.... ..+..+.......+....+..|.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITVLII-ARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 4457788899999999999999998887776666665554431 22222232 23333333333344555788999
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhcccc
Q 013431 368 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 368 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
.|+++|+++.++.+....++..++|.+.+.+.+..+++..+.+.+...++..+..+...+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999998888888888877777766665555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-10 Score=105.34 Aligned_cols=157 Identities=15% Similarity=0.034 Sum_probs=113.4
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
......|.+.++.+.+. .+.++..+...++..++++..|++.||+|||+.+..+..+.+++..+...... .++.+..
T Consensus 21 ~~~~l~~~~~~~~~~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--~~~~~~~ 97 (410)
T TIGR00885 21 ITNPMVPQFQQAFTLTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--IMNYTLF 97 (410)
T ss_pred hHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--hccHHHH
Confidence 34567788878888776 88999999999999999999999999999999999998888887766543211 1122223
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh--------------------
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-------------------- 401 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------- 401 (443)
+...++.+.+.+.. .+....+..+..|++++++..++.+....+|..++|.+.+.+...
T Consensus 98 l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (410)
T TIGR00885 98 LVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSA 176 (410)
T ss_pred HHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHH
Confidence 33333333333333 333336677888989999999999999999999999998877432
Q ss_pred ------hccchhhhHHHHHHHHHHHHh
Q 013431 402 ------LGAENIFLLFAAIAFLAVLFI 422 (443)
Q Consensus 402 ------~g~~~~~~~~~~~~~~~~~~~ 422 (443)
.+|+.+|.+.+++.++..++.
T Consensus 177 ~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 177 IKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788887777666554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-10 Score=105.80 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=120.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhh
Q 013431 23 GSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 102 (443)
Q Consensus 23 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 102 (443)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+...++|.+.+++.+++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999998888878889999999999999999877766677
Q ss_pred hHhhhcCcccchhhHHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHH
Q 013431 103 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 163 (443)
Q Consensus 103 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 163 (443)
.++.+..+++.++...+. .+....+|..+++.+++++.+.. ||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHH
Confidence 777888887777776665 67889999999999999999987 9999999988887766543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6e-10 Score=105.51 Aligned_cols=149 Identities=16% Similarity=0.064 Sum_probs=99.2
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA----YAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~----~~~~~~~l~~~r~l~G~~ 93 (443)
+.+++|.+..+.+...+...+...+++++.|+++||+|||+.+.++..+.++...... ..++....+..-.+.+++
T Consensus 270 l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (432)
T PRK10406 270 LVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI 349 (432)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4566899999999999998888899999999999999999988776655433332111 122333222222323333
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHH-HHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
.+...+....++.|++|++.|+.++|+.+...++ .....|.+.+.+ +..+.|...++..++..++..+..+++
T Consensus 350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4444455677889999999999999998866554 344477777754 444246666666666666665555544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.9e-10 Score=99.18 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=123.5
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
+....+.+-++.++++ .+.+++..+..+.+.+.++..|.+.||+|.|++...+.++..+-.+.+.+... +.....+
T Consensus 33 ~s~l~~~i~~~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~---~~~~~~l 108 (417)
T COG2223 33 FSPLGVFIKSDFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---YPSTWQL 108 (417)
T ss_pred HHHHHhhhccccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc---CCchHHH
Confidence 4445555557778877 89999999999999999999999999999999999888887777776665432 2222233
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc---cchhhhHHHHHHHHHH
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG---AENIFLLFAAIAFLAV 419 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~ 419 (443)
..+.++.+..+..+. ....++++.+|++++|.++|+.. .+++|..+...+...+....| |+....+.....++..
T Consensus 109 l~~gll~G~~GasFa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 109 LVIGLLLGLAGASFA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred HHHHHHHhcccceeh-cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 45588999999999999999999 999999999999999999988 8888888777777777
Q ss_pred HHhhhcccc
Q 013431 420 LFIVRTVPE 428 (443)
Q Consensus 420 ~~~~~~~~~ 428 (443)
+..++..++
T Consensus 187 v~~~~~~~d 195 (417)
T COG2223 187 VLAWLGMND 195 (417)
T ss_pred HHHHHHhCC
Confidence 766666543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=104.12 Aligned_cols=119 Identities=24% Similarity=0.296 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHhhhhhhhchhhhh
Q 013431 25 TFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLVGRLLYGLGIGLAMHGAPL 103 (443)
Q Consensus 25 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 103 (443)
++.+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999999999999999999999998888887777665 46677788889999999999999999
Q ss_pred HhhhcCc-------ccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 013431 104 YIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINAV 143 (443)
Q Consensus 104 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 143 (443)
+++|..| ++++|.+.++.+....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998865 456799999999999999999999998876543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=92.80 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=126.8
Q ss_pred CCCCCCCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc-------ch
Q 013431 7 LALPSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-------PG 79 (443)
Q Consensus 7 ~~~~~~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-------~~ 79 (443)
..+....-.|++++.+|.|.+|.+.+.+.-.+|..+ .++.|.+.|++|+|.++.+|.+...++..+...+ .+
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~ 95 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP 95 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence 344555567999999999999999999999999987 5889999999999999999999999998877652 47
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHH
Q 013431 80 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 159 (443)
Q Consensus 80 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~ 159 (443)
+|.+.+..++.|.+.+...++....-.+.|| ++||++.|+.-...+++..+-..+...+.+.. .-+..+.....+.++
T Consensus 96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la~~~~~v 173 (250)
T PF06813_consen 96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLAVLPAVV 173 (250)
T ss_pred hHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHH
Confidence 8888888999999888777777777778888 68999999999999999888777766655543 445555555555555
Q ss_pred HHHHHhcCCC
Q 013431 160 MGIGMWSLPP 169 (443)
Q Consensus 160 ~~~~~~~~~e 169 (443)
.++..+++++
T Consensus 174 ~l~~~~~vr~ 183 (250)
T PF06813_consen 174 CLVAMFFVRP 183 (250)
T ss_pred HHHHhhheec
Confidence 5555555433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.8e-10 Score=107.71 Aligned_cols=149 Identities=14% Similarity=-0.017 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccc
Q 013431 280 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 359 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (443)
.+.++......++.+++.++.|+++||+|||+.+..+.++..++.++...............+...-+..+.......+.
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 135 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL 135 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 46678889999999999999999999999999998887777776665543211000001222333333333333344455
Q ss_pred eeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH-----------------------hhccchhhhHHHHHHH
Q 013431 360 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-----------------------LLGAENIFLLFAAIAF 416 (443)
Q Consensus 360 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~~~~~ 416 (443)
...+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+.+.++..+
T Consensus 136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~ 215 (502)
T TIGR00887 136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL 215 (502)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence 56899999999999999999999999999888887765532 1367777765554444
Q ss_pred HHHHHhhhccccC
Q 013431 417 LAVLFIVRTVPET 429 (443)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (443)
+..+ ..+..||+
T Consensus 216 i~~~-~~~~lpES 227 (502)
T TIGR00887 216 LALY-FRLTIPET 227 (502)
T ss_pred HHHH-HHHhCCCC
Confidence 4333 34456765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-10 Score=108.90 Aligned_cols=163 Identities=14% Similarity=0.013 Sum_probs=121.0
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhc-----
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG----- 335 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 335 (443)
.....-++.+-++.+.++ .+.+++.+...++..++.++.+++.||.+||+.+.++.++.+++.++.++.....+
T Consensus 50 g~~~~~l~~iek~F~lss-~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLST-SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred HHHHhhchhhhhhhCCCC-CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 344555667777788877 78899999999999999999999999999999999999999988888765421100
Q ss_pred ----------------------------------------cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccch
Q 013431 336 ----------------------------------------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 375 (443)
Q Consensus 336 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 375 (443)
...+..+++.-++.+.......+...+++.|.+|+++|+.
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~ 208 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL 208 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence 0012333344444555555555677799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHhh---------------------c-cchhhhHHHHHHHHHHHHhhh
Q 013431 376 GISLAVLTNFGSNAIVTFAFSPLKELL---------------------G-AENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 376 ~~g~~~~~~~~g~~~~~~~~g~l~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~~ 424 (443)
+.|+.+....+|..+++.+.+.+.+.+ | |+..|++.+++.++..+..+.
T Consensus 209 ~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 209 YIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887643 1 445577766666665554433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=103.66 Aligned_cols=132 Identities=18% Similarity=0.115 Sum_probs=98.0
Q ss_pred cchhh-hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH----HhccchHHHHHHHHHH
Q 013431 15 RPSLV-AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT----TAYAPGLGVLLVGRLL 89 (443)
Q Consensus 15 ~p~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~----~~~~~~~~~l~~~r~l 89 (443)
.|.+. +.+|.+..+.++....+.++..++.+++|+++||+|||+.+..+..+..+.... ....+++.......++
T Consensus 261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T PRK15075 261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW 340 (434)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 35544 447999999999999999999999999999999999999888765544332211 1123444445555666
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHH-HHHHHHHHHHHhhhcccCCccchH
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVGGWR 147 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~wr 147 (443)
.|++.+...+....++.|.+|+++|+.+.++... +..++..++|.+.+++.+.. |++
T Consensus 341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~-g~~ 398 (434)
T PRK15075 341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT-GDK 398 (434)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc-CCc
Confidence 6777777777777889999999999999998644 44445778999999988876 543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-10 Score=107.68 Aligned_cols=135 Identities=22% Similarity=0.174 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHhhhhhhhchhhhhHhhhcCcc
Q 013431 34 CGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMHGAPLYIAETCPS 111 (443)
Q Consensus 34 s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 111 (443)
....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34455667788999999999999999999999998888888776644 5555666777777788888899999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 112 QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 112 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
+.|++++|+.+....+|.+++|.+.+ +.+ . ++..++++.+...++..+..+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE-K-WLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999988 333 3 667788888888887777777888864
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-10 Score=117.53 Aligned_cols=191 Identities=14% Similarity=0.011 Sum_probs=119.1
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceE
Q 013431 234 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 312 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 312 (443)
.+++++++++.++...++..+........+..+..+.+.. .+.+.....++..+...+..++.+++.|+++||++||++
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 3467777787777665555554322111222222222222 222222456777778888999999999999999999997
Q ss_pred EehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHH
Q 013431 313 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 392 (443)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 392 (443)
+.....+..+.......... ..+...++...++.+.....+.|...+++.+.+|+++++.++|+.++...+|..++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp 161 (1140)
T PRK06814 85 AKILKFAEIGIAALAIYGFH---LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGT 161 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence 54322222111111111111 123334444455555555566677779999999999999999999999999999999
Q ss_pred HhhHHHHHhhccchhhhHHHHHHHHHHHHhhhcccc
Q 013431 393 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 393 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
.+.|.+.+..||...|.....+.+++ ++.....++
T Consensus 162 ~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 196 (1140)
T PRK06814 162 IIGGLATISGNFVILVALLMGIAVLG-WLASLFIPK 196 (1140)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCC
Confidence 99999999988877773333333333 333333443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-10 Score=102.76 Aligned_cols=161 Identities=17% Similarity=0.065 Sum_probs=108.5
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc-----CCceEE-ehhhHHHHHHHHHHHHHHHHhcc
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRPLL-IGGVCGIALSLLLLSAYYKILGG 336 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 336 (443)
...-.|.+.++.|.+. .+.++.... .+...+ .++.|++.||+ ||||.+ ..+....+++...+.+.. ..
T Consensus 7 ~~~~~~~~~~~~g~s~-~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~~ 80 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSL-KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---PS 80 (356)
T ss_pred HHhHHHHHHHHcCCCH-HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---cc
Confidence 4556788889998887 677777544 344444 88999999998 788864 445555555544443321 11
Q ss_pred chhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc--------cchhh
Q 013431 337 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--------AENIF 408 (443)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~~~~~ 408 (443)
.....+....+..+.......+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..| |+..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 1222222222223333333344555788999999999999999999999999999999999988888 88899
Q ss_pred hHHHHHHHHHHHHhhhccccC
Q 013431 409 LLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (443)
.+.++..++.....++..+|+
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 888877666555444444554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-10 Score=102.23 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=121.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccc
Q 013431 278 AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFG 357 (443)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (443)
+..+.|+++....+..++.+++.|.++||+|+|..++++++.+..+.+++++. +.+..+++.=.+-+.......
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------NSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------chhHHHHHHHHHhhhhHHHHH
Confidence 33789999999999999999999999999999999999999999999888873 233333333333444444444
Q ss_pred cceeeeeecccCccc-cchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhccccCCCC
Q 013431 358 PISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 432 (443)
Q Consensus 358 ~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (443)
....++++|.+|.+. |++++|+.-.+..+|-.++|+.+|.++|..|++.+|.+++.++++...+.++..+.++.+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 455688899999776 699999999999999999999999999999999999999999999888777666554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=102.47 Aligned_cols=171 Identities=18% Similarity=0.140 Sum_probs=118.9
Q ss_pred HHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc-----CCce-EEehhhHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRP-LLIGGVCGIALSLL 325 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~~ 325 (443)
.++.+...+.....-+|.++++.|.+. ++.+++...... .+..++.|+++||+ |||| .+..+....+++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~-~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDI-QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 344444455567778899999999988 778777655544 68889999999999 7776 56666666665555
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh-hcc
Q 013431 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGA 404 (443)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~ 404 (443)
.+.+.. ...+...+....+..+.......+...+++.|..|+++|+++.++......+|..+++.+.+.+.+. .||
T Consensus 84 ~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 84 AMAFCP---PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 554321 1122222333322333444445556668899999999999999999998899999999999988885 489
Q ss_pred chhhhHHHHHHHHHHHHhhhccccC
Q 013431 405 ENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
+..|++.+++.++..+. .+..+|+
T Consensus 161 ~~~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 161 GNTYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 99998888776665543 3344444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.7e-10 Score=101.36 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=107.4
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
.|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++..... .-++.|++
T Consensus 220 lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~ 298 (355)
T TIGR00896 220 LPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLG 298 (355)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHh
Confidence 4666778899999999999999999999999999999999 567777788888888777777665443332 45778999
Q ss_pred hhhhchhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchH
Q 013431 94 IGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWR 147 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr 147 (443)
.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.++.++|.
T Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 299 QGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred hhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999888777765554 5667899999998899999999999999888775554
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-07 Score=86.08 Aligned_cols=338 Identities=14% Similarity=0.027 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc------c--c----hHHH---HHHHHHHHhhhh
Q 013431 30 SLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------A--P----GLGV---LLVGRLLYGLGI 94 (443)
Q Consensus 30 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~--~----~~~~---l~~~r~l~G~~~ 94 (443)
+...-.-.+...+.++..|.+.||..|.+++..+.+..-++..+++. . + +-+. +++.-.+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 33344445567788899999999999999988876665444333321 1 1 1122 222222222211
Q ss_pred hh-hchhhhhHhhhcC------cccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hc
Q 013431 95 GL-AMHGAPLYIAETC------PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WS 166 (443)
Q Consensus 95 ~~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~ 166 (443)
-. ......++=.||. +++++.+..+...-.--+..+++|++.|.+.... +.+....+.+...++..+.= ++
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112222224443 3455677788888888899999999999988766 77777666666665554322 11
Q ss_pred C----CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCch
Q 013431 167 L----PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 242 (443)
Q Consensus 167 ~----~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
+ ...|. +..|+.+++.+.+++.+ +..+ +...........+ .-++....++.-++++.+
T Consensus 200 l~~VY~~~P~-L~~~~~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~--~~~~~~~~w~~Y~~q~vf 261 (432)
T PF06963_consen 200 LARVYNSVPA-LAVKKRSSESESSSDEE------------SSSE---SSSDPSILKRLWN--PLRTIIRGWRTYFRQPVF 261 (432)
T ss_pred HHHHHHhChH-hcCCCCCcccccccccc------------cccc---ccchhhHHHHHHH--HHHHHhccHHHHHhCHHH
Confidence 1 11121 10000000000000000 0000 0000000000000 011123445566666644
Q ss_pred hHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHH
Q 013431 243 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 322 (443)
..-+-.. +.++...+ +......|+.+.|+++ ...+..-....+.++.+.+...++.+|+|..|.-.++...-..
T Consensus 262 las~ala-lLY~TVLs----f~~lmt~yl~~~G~s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~ 335 (432)
T PF06963_consen 262 LASFALA-LLYFTVLS----FGGLMTAYLKSQGYSP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWV 335 (432)
T ss_pred HHHHHHH-HHHHHHhc----CcHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4333222 22222222 3445556677788887 8888899999999999999999999999998887777665544
Q ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHHHH---hhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHH
Q 013431 323 SLLLLSAYYKILGGF-PLVAVSALLLYVGCY---QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 392 (443)
Q Consensus 323 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 392 (443)
+..+.......+..+ +......++...... -.++-.....+++|..|+++||+..|+-+..+++...+.-
T Consensus 336 ~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 336 CLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 443333222222221 111111111111111 1122223346788999999999999999888887765443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-07 Score=93.08 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=123.7
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHhccch--------HHHHHHHH
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPG--------LGVLLVGR 87 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~l~~~r 87 (443)
.+.+.+|.+.++...+...+....-+..+++|+++|+ +||++.+.++.++..++..+.+++.. ....+++-
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL 92 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL 92 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence 3556789999999999999999999999999999996 69999999999999999988877421 23466778
Q ss_pred HHHhhhhhhhchhhhhHhhhcCccc---chhhHHHHHHHHHHHHHHHHHHhhhcccCCc------cchHHHHhhhhHHHH
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLAL 158 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------~~wr~~f~~~~~~~~ 158 (443)
.+.++|.|+.-|...+...|.++++ +|...+.++..+.++|.++++++.+++.+.. .+|...|.+.++..+
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 8899999999999999999999754 3677888999999999999999988875321 269999999888887
Q ss_pred HHHHHHh
Q 013431 159 LMGIGMW 165 (443)
Q Consensus 159 ~~~~~~~ 165 (443)
+.++...
T Consensus 173 ia~lvf~ 179 (654)
T TIGR00926 173 LALIVFM 179 (654)
T ss_pred HHHHHHH
Confidence 7766544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=101.92 Aligned_cols=163 Identities=14% Similarity=0.105 Sum_probs=104.4
Q ss_pred hhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 262 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.+..+.+.+.++.+.+. .+.+....... ......++.|++.||+|+|+++.++.++..++.++.++.....-..+...
T Consensus 45 ~fsv~s~~L~~~lgls~-~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~ 122 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQ-RDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR 122 (591)
T ss_pred HHHHHHHHHHHHhCcCH-HHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence 46677788888888876 56666655533 33345667899999999999999999988888887776321000012222
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (443)
+.+...+.+.......+.....+.+.+| ++||++.|+......+|+++.+.+...+.. .+++..+++.+++.++..++
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222233355677787 789999999999999999875555554443 24566777777777766665
Q ss_pred hhhcccc
Q 013431 422 IVRTVPE 428 (443)
Q Consensus 422 ~~~~~~~ 428 (443)
.+.+.+.
T Consensus 201 ~~~~vr~ 207 (591)
T PTZ00207 201 AIVFMRL 207 (591)
T ss_pred HHhheeC
Confidence 5555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=103.71 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=142.3
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLG--RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 91 (443)
-.|+..++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..++++..+++.+.+.++++++.+...-.+.|
T Consensus 320 ~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG 399 (509)
T KOG2504|consen 320 YLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFG 399 (509)
T ss_pred HHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 367888899999999999999999999999999999999988 556677788889999999999999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCC
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 168 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 168 (443)
++.|.........+.|..+.++-..+.|+.....+++.++||++++++.+..++|...|+..++..++..+.++..+
T Consensus 400 ~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 400 FCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999888888899999999999999999999999999999999999998886799999999999888877777665
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=100.30 Aligned_cols=135 Identities=13% Similarity=-0.041 Sum_probs=96.7
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhH
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 340 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (443)
.....+.|.+.++.+.++ .+.++......++..++.+..|++.||+|||+.+..+..+.+++.++...... .++...
T Consensus 43 ~~~~~~~p~i~~~~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--a~~~~~ 119 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTL 119 (438)
T ss_pred HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--cCCHHH
Confidence 456678888877788876 89999999999999999999999999999999999998888887766432111 122223
Q ss_pred HHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 013431 341 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 399 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 399 (443)
.+...++.+.+.+. ..+....++.|..|++++...+++.+....+|..++|.+.+.+.
T Consensus 120 ll~~r~l~G~g~g~-~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 120 FLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 33333456667766666666789999999999999998876554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.7e-10 Score=104.94 Aligned_cols=177 Identities=18% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhH
Q 013431 239 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 318 (443)
++++...+...++..............-++.+.++.|.++ ...++.....+...+..++.|+++|.+|||...+.+.+
T Consensus 39 s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~--~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~ 116 (599)
T PF06609_consen 39 SPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD--NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSL 116 (599)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 3444444433444333332222223344566677777654 67778888889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 319 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
+..++.++.+.. ++....+....+.+.+. +........++|..|.+.|..+.++.....-....++|.+...+
T Consensus 117 l~vvG~Iv~atA-----~~~~~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 117 LGVVGSIVCATA-----QNMNTFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHHhHHHHhhcC-----CcHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 888888877642 22233333333333322 22223445689999999998777666544444444566666555
Q ss_pred HHhhccchhhhHHHHHHHHHHHHhhh
Q 013431 399 KELLGAENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 399 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 424 (443)
..+.+|++.|++.++...++++...+
T Consensus 190 ~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 190 AAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55678999999888876666554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-07 Score=87.87 Aligned_cols=125 Identities=5% Similarity=-0.090 Sum_probs=96.9
Q ss_pred chhhhhhcc-----hhhHHHHHHHHHHHHHHHH-HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc----c-------
Q 013431 16 PSLVAQLGS-----TFRLFSLALCGSLYGALLG-SILVYSIADFLGRKRELIIAAVLYALGALTTAYA----P------- 78 (443)
Q Consensus 16 p~i~~~~~~-----s~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~------- 78 (443)
-+++|.+.+ +.+.+.++-+...+..++. .++.+++++|++|++++-.....+.....++++. +
T Consensus 27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~ 106 (472)
T TIGR00769 27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA 106 (472)
T ss_pred HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence 356666655 3467999999998887777 9999999999999999888777776666665553 1
Q ss_pred --------------------hHHHHHHHHHHHhhhhhhhch-hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhh
Q 013431 79 --------------------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 137 (443)
Q Consensus 79 --------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~ 137 (443)
+.|...+..+...+......+ .-..+.+|.++.+|-.|..+++..+.++|.++++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~ 186 (472)
T TIGR00769 107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK 186 (472)
T ss_pred HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133344444555555555555 77889999999999999999999999999999999888
Q ss_pred ccc
Q 013431 138 FQI 140 (443)
Q Consensus 138 ~l~ 140 (443)
++.
T Consensus 187 ~~~ 189 (472)
T TIGR00769 187 YFS 189 (472)
T ss_pred HHH
Confidence 866
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-09 Score=94.69 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=107.9
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchh
Q 013431 21 QLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 100 (443)
Q Consensus 21 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 100 (443)
.+|.++++.++..+.+..+..++.+..+++.||+|+||.+.++..+..++.++....++...+ ..-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999998888888877666665544333 4556899999999999
Q ss_pred hhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhH
Q 013431 101 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAP 155 (443)
Q Consensus 101 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~ 155 (443)
..+...+..|+ +.+++.++. ....+|..++|++.|.+.+.. |.+..|++..+
T Consensus 251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 99999888874 456666775 567789999999999988877 78888874443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-10 Score=98.18 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=94.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccc
Q 013431 279 AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGP 358 (443)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (443)
...+|++.+.+.+...+.++..|.++||+|||.++..+.+..++...+.+. ..++..++..=+..+.+....+
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~Gi~kgnl~- 139 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLGGIFKGNLS- 139 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhccCchH-
Confidence 367889999999999999999999999999999999999888887777665 2334333333445555555444
Q ss_pred ceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013431 359 ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 359 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 400 (443)
+..++++|++++++|+.+++.+++...+|-.+||.++|++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 445999999999999999999999999999999999999987
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=113.87 Aligned_cols=143 Identities=20% Similarity=0.181 Sum_probs=122.7
Q ss_pred hhhhhhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhh
Q 013431 17 SLVAQLGSTFR-LFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 17 ~i~~~~~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 95 (443)
.+.+++|.+.. +.+++.+...++..++++++|+++||+++|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34567899998 99999999999999999999999999999999999998888888888888899999999999999999
Q ss_pred hhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHH
Q 013431 96 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 159 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~ 159 (443)
...+...+++.+..|+++|++++++.+....+|..+++.+++.+.....++...|++.+.+.++
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888776544222566666665554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=97.50 Aligned_cols=123 Identities=25% Similarity=0.257 Sum_probs=101.1
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHhhhhhh
Q 013431 19 VAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGL 96 (443)
Q Consensus 19 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 96 (443)
++.+|.++...++......++..++.++++++.||+|+|+++.++..+.+++.++..+.+ +++.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 445676666555555555778888999999999999999999999998888877776654 677777888899999999
Q ss_pred hchhhhhHhhhcCccc-------chhhHHHHHHHHHHHHHHHHHHhhhcccC
Q 013431 97 AMHGAPLYIAETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQIN 141 (443)
Q Consensus 97 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 141 (443)
..+...++..|..|.+ ++|...+..+....+|..+|+.+.+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988754 35889999999999999999988877653
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-09 Score=97.07 Aligned_cols=169 Identities=16% Similarity=0.113 Sum_probs=114.9
Q ss_pred chhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc----ccCCceEEehh-hHHHHHHHHHHHHHHHHh
Q 013431 260 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD----DLGRRPLLIGG-VCGIALSLLLLSAYYKIL 334 (443)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 334 (443)
+.....+.+.++++.|.+. ...+.......+.+++..++.|+++| |+||||..+.. .....+++.++.......
T Consensus 20 ~~l~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 3456677788888888876 88899999999999999999999999 59999998764 444444444444321100
Q ss_pred --------ccc-h---hHHHHHHHHHHHHHhhccccceeeeeecccCcccc--chhHHHHHHHHHHHHHHHHHhhHHH--
Q 013431 335 --------GGF-P---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR--GRGISLAVLTNFGSNAIVTFAFSPL-- 398 (443)
Q Consensus 335 --------~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l-- 398 (443)
... . ...+....+.....+....|. .+++.|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 000 0 111222223333444444444 4889999998765 5788999999999999999888764
Q ss_pred HHhh-------------ccchhhhHHHHHHHHHHHHhhhccccCC
Q 013431 399 KELL-------------GAENIFLLFAAIAFLAVLFIVRTVPETK 430 (443)
Q Consensus 399 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (443)
.+.. +.+..|++.+++.+++.++..+..+|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 2222 3456788877777777777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=90.71 Aligned_cols=134 Identities=17% Similarity=0.048 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhc
Q 013431 29 FSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 108 (443)
Q Consensus 29 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 108 (443)
.+.+.-+..+...+.-+.+.++.+|+..+.-+.....++.++.++.++++|.+.=+++-++.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 456666777788888888999999998776667777788899999999999999999999999999988888888644 5
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 109 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 109 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
+++ ...+-++.+.+.+.++|+..-..+....-+-|..+.....+.++..+..+++
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 553 3578888888888888888766655521144777777776666555554443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-08 Score=92.15 Aligned_cols=154 Identities=21% Similarity=0.134 Sum_probs=118.9
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc---hHH------HHHHH
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLG------VLLVG 86 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~------~l~~~ 86 (443)
.++-++-|++..+..++.....+...+..+++..+.||+|||+.++.+..+..+..++..... +.. ..+++
T Consensus 294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~ 373 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA 373 (485)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 355667799999999999999999999999999999999999999999999988888776531 111 12344
Q ss_pred HHHHhhhhhh-hchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HH
Q 013431 87 RLLYGLGIGL-AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GM 164 (443)
Q Consensus 87 r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~ 164 (443)
.++..++.+. .-|...-+.+|.+|++.|..++++.....-+...+-...-..+.+..++ +.|+...+++++..+ .+
T Consensus 374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHH
Confidence 4443333322 4678888899999999999999999998888888777776666555533 677777777776654 56
Q ss_pred hcCCCCh
Q 013431 165 WSLPPSP 171 (443)
Q Consensus 165 ~~~~es~ 171 (443)
+.+|||.
T Consensus 452 ~~lPETk 458 (485)
T KOG0569|consen 452 RYLPETK 458 (485)
T ss_pred HhCcccC
Confidence 6799985
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=91.85 Aligned_cols=146 Identities=36% Similarity=0.542 Sum_probs=119.8
Q ss_pred Ccchhhhhhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTF--RLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLL 89 (443)
Q Consensus 14 ~~p~i~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l 89 (443)
..+.+..+++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++.++ .+.+++.|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLL 103 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3455666666666 58899999999999999999999999999999888888776666777777776 9999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcc-cchhhHHHHHHH-HHHHHHHHHHHhhhcccCC-ccchHHHHhhhhHHHHH
Q 013431 90 YGLGIGLAMHGAPLYIAETCPS-QIRGTLISLKEL-FIVLGILLGYFVGSFQINA-VGGWRYMYGLSAPLALL 159 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~-~~~wr~~f~~~~~~~~~ 159 (443)
+|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ..+||..|.........
T Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999999999999997 678999999888 5888888888777665543 22799966665555543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=93.43 Aligned_cols=138 Identities=11% Similarity=0.013 Sum_probs=107.4
Q ss_pred hhHhhHHHHHHhcCCCCchh-HHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhH
Q 013431 262 SVLYYAGPILQSAGFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 340 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (443)
...+..|++.++.|.+. .+ .+.+...+..+..+..+.+|+++||+|.|+++..+.+...+..++.++.. ...
T Consensus 44 n~s~a~p~L~~elglT~-~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~------Sl~ 116 (511)
T TIGR00806 44 GESFITPYLLTVLNFTE-ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT------SVW 116 (511)
T ss_pred hHHHHHHHHHHHcCCCH-HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 35566777778888887 56 89999999999999999999999999999999988888888777777631 233
Q ss_pred HHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 013431 341 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 408 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 408 (443)
.+.+.=++.|....... ....++.+.+|+++|+++.|+.+....+|.++++++.+. ....||+...
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 33333333333333333 455888899999999999999999999999999999998 5567765543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-09 Score=95.02 Aligned_cols=125 Identities=24% Similarity=0.363 Sum_probs=99.6
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHH-HHHHHHHHHHHHHhccchHH--------
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIAD----FLGRKRELI-IAAVLYALGALTTAYAPGLG-------- 81 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~-~~~~~~~i~~~~~~~~~~~~-------- 81 (443)
.|+...++|++....+.+--+..+...+.+|+.|..+| ||||||.++ .+..+.+++.++..++.++.
T Consensus 55 ~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~ 134 (498)
T KOG0637|consen 55 LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNER 134 (498)
T ss_pred ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc
Confidence 46677788998888888888888889999999999999 689877655 46667777777877765433
Q ss_pred ---------HHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhh-HHHHHHHHHHHHHHHHHHhhhcc
Q 013431 82 ---------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT-LISLKELFIVLGILLGYFVGSFQ 139 (443)
Q Consensus 82 ---------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~l~~~l 139 (443)
.++++-.+.=++.......+.+++.|...+++|.+ +++++....++|..+|..++++.
T Consensus 135 ~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 135 KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 34444555555666788889999999998777777 99999999999999999998853
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-09 Score=96.53 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccc
Q 013431 280 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 359 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (443)
.+-+++......+.+++.+.++++.||+|.|+++..+.++.+++.++...... ...+..+++=++-+.+.+..+ |.
T Consensus 73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~---~~~~~~~~~R~lqGl~~g~~~-pa 148 (466)
T KOG2532|consen 73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS---IGFYLLLVLRFLQGLGQGVLF-PA 148 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---hcchhhHHHHHHhHHHHhHHH-hh
Confidence 67888999999999999999999999999999999999999988888877653 222333333344444444444 44
Q ss_pred eeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh-hccchhhhHHHHHHHHHHHHhhhcccc
Q 013431 360 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAENIFLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 360 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
...+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++-.++.+.+..+
T Consensus 149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 458899999999999999999999999999999999999998 999999999999988887766555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-08 Score=90.18 Aligned_cols=151 Identities=24% Similarity=0.326 Sum_probs=121.5
Q ss_pred hhhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc-chHHHHHH----HHHHHhh
Q 013431 19 VAQLG-STFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLV----GRLLYGL 92 (443)
Q Consensus 19 ~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~----~r~l~G~ 92 (443)
-+|.| .+.+..+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...++|+
T Consensus 234 l~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~ 313 (400)
T PF03825_consen 234 LQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGL 313 (400)
T ss_pred HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhH
Confidence 35555 667777888888888888999999999999999999999999999988888877 55544333 3456999
Q ss_pred hhhhhchhhhhHhhhcCcccchhhHHHHHHH-HHHHHHHHHHHhhhcccCCcc-----chHHHHhhhhHHHHHHHHHH-h
Q 013431 93 GIGLAMHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGM-W 165 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~-----~wr~~f~~~~~~~~~~~~~~-~ 165 (443)
..+..+.+...++.+..|++.|+++.+++++ ..++|..+|..++|++.+..+ .|...+.+.+...++..+.+ +
T Consensus 314 tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 314 TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877 578999999999999988752 35556666666666655444 3
Q ss_pred cCCC
Q 013431 166 SLPP 169 (443)
Q Consensus 166 ~~~e 169 (443)
+.+|
T Consensus 394 ~fk~ 397 (400)
T PF03825_consen 394 LFKP 397 (400)
T ss_pred hccC
Confidence 4443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-08 Score=91.77 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHhhhhhhhch
Q 013431 25 TFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 25 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 99 (443)
+.+..+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778777899999999999999999999999888776666555432 34567777788899999999999
Q ss_pred hhhhHhhhcCcc-------cchhhHHHHHHHHHHHHHHHHHHhhhcccC
Q 013431 100 GAPLYIAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQIN 141 (443)
Q Consensus 100 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 141 (443)
...++++|..|. ++.|..++......-+|..+++.+.+++.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999663 334568899999999999999988887664
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-08 Score=90.70 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=124.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhh
Q 013431 24 STFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 103 (443)
Q Consensus 24 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 103 (443)
.+....|.+.+...+.-++...+..++.+|+|.|+.++++..+..+=.+++++++|.+.+.+.+.+.|+-.+........
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcccchhhHHHHH-HHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCC
Q 013431 104 YIAETCPSQIRGTLISLK-ELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLP 168 (443)
Q Consensus 104 ~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~ 168 (443)
++++.+|+|-.++...+. +...++|..+.+.++|.+.|+. |.+..|++.+.+.+...++. +.++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHheeeec
Confidence 999999988887877774 6889999999999999999988 99999999888877665544 4443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=93.06 Aligned_cols=146 Identities=18% Similarity=0.114 Sum_probs=108.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh
Q 013431 276 FSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 354 (443)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (443)
+++ .++.-....++...-+..+++|+++|| +|+|+.+..+.++++++.+++.... ......+...+.+......
T Consensus 58 ~~~-~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----~~~~~gl~i~L~~I~iG~G 132 (498)
T COG3104 58 FDE-THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----VSGPGGLYIGLALIIVGTG 132 (498)
T ss_pred cCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----cccccHHHHHHHHHHhccc
Confidence 666 555555566666666778899999999 5999999999999999999887621 0122233333333344445
Q ss_pred ccccceeeeeecccCcc--ccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhcc
Q 013431 355 SFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV 426 (443)
Q Consensus 355 ~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
.+-+....+..|++|++ +|-.+.++..+..++|+.++|.+.+++.++.||...|...++-..++.+..+...
T Consensus 133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55555557888888754 3667778888888999999999999999999999999988888888777665544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.3e-09 Score=90.22 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhh
Q 013431 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT 116 (443)
Q Consensus 37 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 116 (443)
.+.-..|.++.+++.||+|||+.|..+.+++++..++...+.+-....+.-+..-++..+.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34556789999999999999999999999999999888776543333333333333344566678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 117 LISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 117 ~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
..|..+...-+|.++.|+++ ...+. +-..+..+.+...++..+...++|-++
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999999 32332 334556666777777777777777544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=95.85 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccc
Q 013431 280 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 359 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (443)
....+..++..++..+|.++.|.++||+|||+++..+.++..++.+..++ ......+.+.=++.+....+....
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~------a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF------APNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHhhccchhHH
Confidence 66778888899999999999999999999999999999988888866665 334455555555555555566667
Q ss_pred eeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhccccC
Q 013431 360 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 360 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
.+.+..|..++++|+.+..+ ......++..++...+++.. +|++.+++......+..+. +++.+|.
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 77899999999999999999 77888888999999988887 7888888877777666554 4444453
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-08 Score=81.47 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=112.2
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHHHHhccchHHHHHHHHHHHhhhhh
Q 013431 17 SLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLY-ALGALTTAYAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 17 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~-~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 95 (443)
-.++.||+|+.+.+-+.+....-.++.+++.|.++||+|++-+.+.+..+. .++-....+ +++.=.++..+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 457899999999999999999999999999999999999998777755443 333333333 23333456677888777
Q ss_pred hhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccch--HHHHh-hhhHHHHHHHHHHhcC
Q 013431 96 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW--RYMYG-LSAPLALLMGIGMWSL 167 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~w--r~~f~-~~~~~~~~~~~~~~~~ 167 (443)
.........++...|+++.|++.+..+...++|..+.|++++.+.+..+++ --+|. ....+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 666666777888899999999999999999999999999999999876433 33343 4444555544444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.4e-08 Score=93.28 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=120.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc----------cchHHHHHHHHHH
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----------APGLGVLLVGRLL 89 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----------~~~~~~l~~~r~l 89 (443)
+++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.....-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 578999999999999999999999999999999999999999999999988866532 1444456667789
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCcc----chHHHHh---hhhHHHHHHHH
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG----GWRYMYG---LSAPLALLMGI 162 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~----~wr~~f~---~~~~~~~~~~~ 162 (443)
.+++.+........++.+..|+++++...++.....++|..+++.+++.+.+..+ +.+..+. +..+..++...
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876541 1332222 23333444444
Q ss_pred HHhcCCC
Q 013431 163 GMWSLPP 169 (443)
Q Consensus 163 ~~~~~~e 169 (443)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 5557775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-07 Score=87.75 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHhhhhhhhchhhhhHh
Q 013431 28 LFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY--APGLGVLLVGRLLYGLGIGLAMHGAPLYI 105 (443)
Q Consensus 28 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 105 (443)
..+.+.....+...++.+++++++||+|+|+.+..+..+.++......+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888889999999999999999999888766654433322 35777788888999999999999999999
Q ss_pred hhcCccc-------chhhHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013431 106 AETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQINA 142 (443)
Q Consensus 106 ~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 142 (443)
+|..+.+ +.|...+..+....+|..+|+.+++.+.+.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988632 235677888888899999999988886653
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=81.89 Aligned_cols=150 Identities=24% Similarity=0.207 Sum_probs=124.9
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 93 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 93 (443)
+|.+-.|-|+|..+.|++.+...+.....++....+++|. .+|+..+....++.++...+.+.+.-..+.. -++.|+|
T Consensus 231 LP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G 309 (395)
T COG2807 231 LPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLG 309 (395)
T ss_pred HHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCc
Confidence 6889999999999999999999999999999999999976 4677777788888888888877765444444 4999999
Q ss_pred hhhhchhhhhHhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh
Q 013431 94 IGLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 165 (443)
.|..+|....++.+..++ ++-++..+..+....+=...||.+.|++.|..++|+..++..+...+...+.-+
T Consensus 310 ~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 310 QGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred cchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888764 445666777777777777889999999999988999998888877776655444
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=81.77 Aligned_cols=378 Identities=15% Similarity=0.142 Sum_probs=220.2
Q ss_pred CCcchhh-hhhcchhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013431 13 CSRPSLV-AQLGSTFRLFS-LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 90 (443)
Q Consensus 13 ~~~p~i~-~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 90 (443)
+-.|.+. .+.|++..|+. -+.=...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 3344444 45677776643 333444456667777777899999999999887777777777888899999999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCcc-chHHHHhhhhHHHHHHHHHHhcCCC
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSLPP 169 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e 169 (443)
|...+ ...+-++++-+..+++++.++.+...+..-.|...|..++..++.... +.+..=.+......+.....+++|.
T Consensus 106 G~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~ 184 (433)
T KOG3810|consen 106 GPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR 184 (433)
T ss_pred ChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence 99866 667888999999999999999999999999999999998888776541 3333334444444445556667776
Q ss_pred ChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHH
Q 013431 170 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 249 (443)
Q Consensus 170 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (443)
.+|-+.-++.+.+.. .....+.++ ..+..+... ..-..-..++.+..++|.+....
T Consensus 185 v~rSl~f~~~~~~~~-----------v~~~e~~~~-----~~~~~~~l~-----~~~~~l~~~l~~~y~np~ll~WS--- 240 (433)
T KOG3810|consen 185 VKRSLYFHRLEDKIS-----------VGDLEEMNP-----QASYMSYLR-----GAFVLLWRDLQECYSNPRLLKWS--- 240 (433)
T ss_pred Cchhhhhhcccccce-----------eccchhcCc-----cchhhHHHH-----HHHHHHHHHHHHHhcCchhhhhH---
Confidence 654322111100000 000000000 000000000 00001112355566777554433
Q ss_pred HHHHHHHHhCchhhHhhHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH
Q 013431 250 GLVLFQQITGQPSVLYYAGPILQSAG-FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
+.+....+++.-...|...+.++.. .+.....|..-....+.+.++.+..|.+.-+..|..-++++.....-+.+++.
T Consensus 241 -lWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~ 319 (433)
T KOG3810|consen 241 -LWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFI 319 (433)
T ss_pred -HHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhh
Confidence 3344444455556777777766653 22223445566666777888888888886666665444333332222222222
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-----
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----- 403 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----- 403 (443)
.. ...+.+.......++...+..... +...-+++....+.-|...|+..++.-+-..+-..+ ..|..|
T Consensus 320 m~---~t~~Iw~~Ya~yvlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~i 392 (433)
T KOG3810|consen 320 MA---QTQHIWVCYAGYVLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDI 392 (433)
T ss_pred hh---cccceehhhhhHHHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCc
Confidence 21 123445555555555555554443 332344455567888999999877665544443333 334222
Q ss_pred ------cchhhhHHHHHHHHHHHHhh
Q 013431 404 ------AENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 404 ------~~~~~~~~~~~~~~~~~~~~ 423 (443)
|..-|.+.+++.++.....+
T Consensus 393 r~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 393 RTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred ceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 33456777777777665433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-07 Score=90.17 Aligned_cols=140 Identities=17% Similarity=0.073 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccee
Q 013431 282 ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISW 361 (443)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (443)
.+++.+...++..++.++.|+++|++|||+.+..+.+...++.++.... .+.......-++.+.+.+... .+..
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~~-~~~p 164 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGAS-VLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhhh-hcch
Confidence 3799999999999999999999999999999999999888888887763 233344444444444444433 3444
Q ss_pred eeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh--ccchhhhHHHHHHHHHHHHhhhccccC
Q 013431 362 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL--GAENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 362 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
.+.+|..|++.||...+..+....+|..++ .+.+...++. +|+..+.+..+.+++..+. .++.||+
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 899999999999999999988887776666 6666666553 7876666666666655555 5555654
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-08 Score=82.47 Aligned_cols=343 Identities=15% Similarity=0.148 Sum_probs=175.8
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHhhhhh
Q 013431 19 VAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 19 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~ 95 (443)
-.+++....|+|.+.-+..-..++...+.|.++|+-|||+.-+.- .+..+++. .+++|-.++++|.+-|+..+
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvty----citYiLsCiTKhSpqYkVLmVGR~LGGiaTs 139 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY----CITYILSCITKHSPQYKVLMVGRVLGGIATS 139 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeee----hHHHHHHHHhhcCCceEEEeehhhhhhHHHH
Confidence 356778888899888888888899999999999999999965443 34444444 47889999999999999999
Q ss_pred hhchhhhhHh-hhcCcccchhhHHHHHH--------HHHHHHHHHHHHhhhcccCCcc-chHHHHhhhhHHHHHHHHHHh
Q 013431 96 LAMHGAPLYI-AETCPSQIRGTLISLKE--------LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 96 ~~~~~~~~~i-~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~ 165 (443)
..+.+-.++. .|.- ++|+.-.-+.. .+..+-.+++.+.+-.+.+... |--.+|-..+.+..+...+.+
T Consensus 140 LLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 140 LLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 9988887754 5543 23433222221 1222333344444444443321 223344444433333222211
Q ss_pred -cCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhH
Q 013431 166 -SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 244 (443)
Q Consensus 166 -~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (443)
-..|.- .++.+.++. . .+-+...+.+..+++.
T Consensus 218 ~~W~ENy---------------------------------gdps~~kdl---l---------tqf~gaa~aiaSD~ki-- 250 (454)
T KOG4332|consen 218 SSWSENY---------------------------------GDPSENKDL---L---------TQFKGAARAIASDEKI-- 250 (454)
T ss_pred hhhhhcc---------------------------------CChhhhHHH---H---------HHhhHhHHHHhcchHH--
Confidence 111100 000000000 0 0011122233333322
Q ss_pred HHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc--eEEehhhHHHHH
Q 013431 245 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PLLIGGVCGIAL 322 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~ 322 (443)
.+...+........+.....|.|.+-.+. ...--|.+...+....++|+-+..++..|-..| ..+.+.+....+
T Consensus 251 -~LLG~iqsLFE~smytFVFLWTPaLspn~---e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a 326 (454)
T KOG4332|consen 251 -ALLGAIQSLFEGSMYTFVFLWTPALSPND---EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIA 326 (454)
T ss_pred -HHHHHHHHHHhhhhheeeeeecccCCCCc---ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHH
Confidence 22222333333333333444555432111 112346777777888888888887777664433 333444444444
Q ss_pred HHHHHHHHHHH--hccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013431 323 SLLLLSAYYKI--LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 323 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 400 (443)
.+.+....... +...+...++..+++-.+.+..+..+. -+-.+..|.+.|++.+-....=-++...++-. ..-.+
T Consensus 327 ~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFRvPLnifvClvLy--nlh~~ 403 (454)
T KOG4332|consen 327 ALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY--NLHVD 403 (454)
T ss_pred HHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhheechhhHhhhhhhe--ecccc
Confidence 33333222211 112233445555555566665555444 66778889888886655443322322222111 10011
Q ss_pred --hhccchhhhHHHHHHHHHHHH
Q 013431 401 --LLGAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 401 --~~g~~~~~~~~~~~~~~~~~~ 421 (443)
..+.+..|-++.....++.+.
T Consensus 404 ~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 404 AFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred cCccccchhhhhhHHHHHHHHHH
Confidence 233456677777766666543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=80.95 Aligned_cols=159 Identities=19% Similarity=0.122 Sum_probs=104.6
Q ss_pred hCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccc
Q 013431 258 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 337 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (443)
+..+.+..|.|.+-++.+++. .+...+.....++..+ +++.|.+.|++|++.++.++.....++...+.......-+.
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq-~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~ 93 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQ-SQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS 93 (250)
T ss_pred CcccchhhhhHHHHHHhCCCH-HHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 344567889999888888887 7777888888888776 58889999999999999999998888888877654422221
Q ss_pred hhHHHHHHHHHHHHHhh-ccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHH
Q 013431 338 PLVAVSALLLYVGCYQI-SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAF 416 (443)
Q Consensus 338 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 416 (443)
...+..+.....++.+. .+.........+.+| ++||++.|+.-....+++++-..+...+.+. +....+...+....
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~ 171 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPA 171 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 22222233222222222 222222233446788 6899999999999888888888777666554 32233344444433
Q ss_pred HHHH
Q 013431 417 LAVL 420 (443)
Q Consensus 417 ~~~~ 420 (443)
+..+
T Consensus 172 ~v~l 175 (250)
T PF06813_consen 172 VVCL 175 (250)
T ss_pred HHHH
Confidence 3333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-07 Score=81.92 Aligned_cols=157 Identities=12% Similarity=-0.013 Sum_probs=112.1
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
.....|.+.+....+. .++++.......+..+.++..+++.+|+|+|+-++.++.+++++..++.-... ...+...
T Consensus 32 ~diLip~l~~~f~ls~-~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---~~~y~~F 107 (422)
T COG0738 32 NDILIPHLKEVFDLTY-FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---SKSYGFF 107 (422)
T ss_pred chhhHHHHHHHhCccH-HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh---hhhHHHH
Confidence 4455666666666665 89999999999999999999999999999999999999999998888753321 1222222
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh-------------------hc
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-------------------LG 403 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------~g 403 (443)
....+..+............++..+.|++..+.-+.+.+.++.+|..++|.+.+.+..+ ..
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~ 187 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASS 187 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 22222222222233344457888888888888888999999999999999999988773 12
Q ss_pred cchhhhHHHHHHHHHHHHhh
Q 013431 404 AENIFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~ 423 (443)
++.++...+...++..+...
T Consensus 188 v~~pYl~~~~~lvll~v~~~ 207 (422)
T COG0738 188 VQFPYLILAGLLVLLAVLIL 207 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45566666666655555433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-08 Score=90.02 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=130.6
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhch
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 99 (443)
+|.+-.+...|........|-.+.-++.+++..|+|+-+++..++.+..+=.+..+..+|.|+.+...+++|+..+..+.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa 478 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA 478 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH
Confidence 45566666677777788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcCcccchhhHHHHHHH-HHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc
Q 013431 100 GAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 166 (443)
Q Consensus 100 ~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 166 (443)
+..+++++..||+-|..+.++.+. ..++|-.+|.++++.+.+.+ +=|..|...++.+++.++....
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765 57889999999999999888 8899999998888877665543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-06 Score=76.97 Aligned_cols=304 Identities=12% Similarity=-0.035 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhh---cccCC-c-cchHH--HHh
Q 013431 79 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS---FQINA-V-GGWRY--MYG 151 (443)
Q Consensus 79 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~---~l~~~-~-~~wr~--~f~ 151 (443)
.++..++.-++.|++.+.......++.+ .+|++. +..+..+.+++++++.++-- ..... . ..++. -|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4667777788899999988888888766 467543 34444455555444443321 11111 0 02222 233
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCC----CCCcchh-hHHHHHHhccccccc
Q 013431 152 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP----GDKLSER-QIEDTLVSLKSSYTD 226 (443)
Q Consensus 152 ~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~ 226 (443)
+..++.++.++....++..|......+...+ ..+++ ++..+......+.++ .++.+.. +.....+...++.++
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPFARYYLQKKLD-KGAGE-DETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQ 257 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhcc-ccccc-ccccccccccccccccccccccccccccccccccccCCccch
Confidence 3444444555555666776643221111100 00000 000000000000000 0000000 000000000001111
Q ss_pred cccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013431 227 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 306 (443)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 306 (443)
.+.+.+.++++|+ .|...+...+.++.....+..+...... .+.+..+....-.....+.++..+|+.+..+.. .
T Consensus 258 ~~~~~~~~~v~kk--i~~~~~~vf~~F~vTL~vFPgv~~~i~~--~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~ 332 (437)
T TIGR00939 258 KPLKTSVWVVFTK--VWLLAFSVVFVFTVTLSVFPAITTAVTS--SGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W 332 (437)
T ss_pred hcccCcHHHHHHH--HHHHHHHHHHHHHHHHHhcCceEEEeec--cCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e
Confidence 1223455555543 4555555555555544333332222111 111122212455677888899999998665432 1
Q ss_pred cCCc-eEEehhhHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHH
Q 013431 307 LGRR-PLLIGGVCGIALSLLLLSAYYKILG------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 379 (443)
Q Consensus 307 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 379 (443)
.++| +.+.+..+.=.+..-++.+....+. -.+.......++..+..++......+.+..+..++++|..+..+
T Consensus 333 p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~ 412 (437)
T TIGR00939 333 PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGAL 412 (437)
T ss_pred eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 1222 2222222222222222111111100 01222333334444555544555555677777888888888777
Q ss_pred HHHHHHHHHHHHHHh
Q 013431 380 AVLTNFGSNAIVTFA 394 (443)
Q Consensus 380 ~~~~~~~g~~~~~~~ 394 (443)
...+-.+|...|..+
T Consensus 413 ~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 413 MVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-07 Score=87.62 Aligned_cols=125 Identities=23% Similarity=0.286 Sum_probs=108.2
Q ss_pred chhhhh-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHhh
Q 013431 16 PSLVAQ-LGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGL 92 (443)
Q Consensus 16 p~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~ 92 (443)
+...++ ++.+ ...+.+.....++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.+++.-++.|+
T Consensus 249 ~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi 327 (428)
T PF13347_consen 249 PYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGI 327 (428)
T ss_pred HHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHh
Confidence 334444 4444 6778888899999999999999999999999999999999999999988876 99999999999999
Q ss_pred hhhhhchhhhhHhhhcCccc-------chhhHHHHHHHHHHHHHHHHHHhhhcccC
Q 013431 93 GIGLAMHGAPLYIAETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQIN 141 (443)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 141 (443)
+.+...+...++++|..+.+ +.|...+..+....+|..+++.+.+.+.+
T Consensus 328 ~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 328 GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998743 34888899999999999999988777654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=63.18 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=67.9
Q ss_pred CCCcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHH
Q 013431 12 HCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLL 84 (443)
Q Consensus 12 ~~~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~ 84 (443)
+.-.|.+++|.++|.++.|++.+.+++||.+|.+....+.++..+++.+..+++...+..+.+++.++++.+.
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 4468999999999999999999999999999999999999999999999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-06 Score=77.90 Aligned_cols=120 Identities=27% Similarity=0.377 Sum_probs=100.6
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHhhhhhhhch
Q 013431 22 LGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 22 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~ 99 (443)
+|-++.+..+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+..++..++.+++.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 355566677788888888888899999999999999999999999999999998876 788899999999999999999
Q ss_pred hhhhHhhhcCccc-------chhhHHHHHHHHHHHHHHHHHHhhhcccC
Q 013431 100 GAPLYIAETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQIN 141 (443)
Q Consensus 100 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 141 (443)
...++++|..+-+ +-|...+......=+|..++..+.++...
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987642 23677777777788888888877666543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=88.75 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccc
Q 013431 280 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 359 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (443)
.+.+...+.+.++.+++.+.++.+.||++..+.+....++..+..++-.. .++...+.+.-++.|.+..+..|.
T Consensus 81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------~~s~~~~ialr~llGl~es~~wP~ 154 (495)
T KOG2533|consen 81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------VHSFPGLIALRFLLGLFESGGWPG 154 (495)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHhcccchH
Confidence 67888999999999999999999999999444433332222222222111 123344444444455555555555
Q ss_pred eeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH------HhhccchhhhHHHHHHHHHHHHhhhccccCC
Q 013431 360 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK------ELLGAENIFLLFAAIAFLAVLFIVRTVPETK 430 (443)
Q Consensus 360 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (443)
...++..-+.+++|+.-+|+.+...++|+++++.+...+. ...||++.|++-+++.++..++.++++|+..
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 5588999999999999999999999999999999987764 3568999999999999998888777776643
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-05 Score=73.95 Aligned_cols=150 Identities=19% Similarity=0.127 Sum_probs=117.7
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhccch--------------
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPG-------------- 79 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~-------------- 79 (443)
...+.++++.+...+.-..+.+.-......+..+.++|.| ||-+++.++.++..++..+..++..
T Consensus 61 v~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~ 140 (571)
T KOG1237|consen 61 VTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPG 140 (571)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Confidence 3456678888888888888888888888899999999975 8999999998888888655443211
Q ss_pred -----------HHHHHHHHHHHhhhhhhhchhhhhHhhhcCc---ccc---hhhHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013431 80 -----------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCP---SQI---RGTLISLKELFIVLGILLGYFVGSFQINA 142 (443)
Q Consensus 80 -----------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 142 (443)
...++.+.-+..+|.|+.-|...++-+|.++ +++ +...+.++....+.|..++..+..+.-+.
T Consensus 141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN 220 (571)
T ss_pred CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 1267777788889999999999999999998 322 23678888899999999999888885455
Q ss_pred ccchHHHHhhhhHHHHHHHHHHh
Q 013431 143 VGGWRYMYGLSAPLALLMGIGMW 165 (443)
Q Consensus 143 ~~~wr~~f~~~~~~~~~~~~~~~ 165 (443)
. +|.+.|.+..+...+.+++++
T Consensus 221 ~-~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 221 V-GWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred c-cceeeccHHHHHHHHHHHHHH
Confidence 5 999999988877776655544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-06 Score=79.60 Aligned_cols=185 Identities=20% Similarity=0.136 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHH----HHHHHHHHHHHHHhhcccCCceEEehhh
Q 013431 242 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI----GVFKLVMTWIAVAKVDDLGRRPLLIGGV 317 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 317 (443)
.+.......+..+.............+......+.+.....+...... ++..++.+...|.++||+|||..+....
T Consensus 20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~ 99 (463)
T KOG2816|consen 20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL 99 (463)
T ss_pred hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence 333344444445544443333333333333333333223344444444 6788888999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHH
Q 013431 318 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 397 (443)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 397 (443)
+...+....+.+. . ++.+. ..-..+.+...+ ....++++|....+.|....|+.+.....+..++|.+.+.
T Consensus 100 ~~~~l~~~~~~~~------~-~~~~~-~~~l~g~~~~~~-s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 100 FGTILPALCLLFQ------G-YWFFL-LLGLSGGFSAIF-SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred HHHHHhHHHHHHH------H-HHHhh-hcccccchhhhh-hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7666655555442 1 22222 222233333333 3445889999999999999999999999999999999999
Q ss_pred HHHhhccchhhhHHHHHHHHHHHHhhhccccCCCCCHH
Q 013431 398 LKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 435 (443)
Q Consensus 398 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (443)
+.+..|+...+.+..+..++.........||+..++.+
T Consensus 171 ~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 171 LVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 99999999999999999988888888888887654433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-06 Score=65.98 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCc
Q 013431 31 LALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCP 110 (443)
Q Consensus 31 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 110 (443)
.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-++.|++.+..+++...++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 4455666677888889999999999999999999988854443 356788999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 013431 111 SQIRGTLISLKELFIVLGILLGYFVGSFQ 139 (443)
Q Consensus 111 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 139 (443)
+++|++..+++......+.++|.++...+
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888776553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=71.21 Aligned_cols=340 Identities=11% Similarity=-0.013 Sum_probs=175.2
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHH-HHHHHHHHHHHHhc-----------
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIAD-----FLGRKRELII-AAVLYALGALTTAY----------- 76 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~~i~~~~~~~----------- 76 (443)
+.|.+-+.-|.|.++.+...-++. . ..--+.|.++.| |+||||.-++ +..+.+....+.+.
T Consensus 52 ~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~ 129 (510)
T KOG3574|consen 52 AIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGG 129 (510)
T ss_pred hhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCC
Confidence 678888888888887765433322 2 123678999999 9999985443 44444433333332
Q ss_pred cchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC------ccchH---
Q 013431 77 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA------VGGWR--- 147 (443)
Q Consensus 77 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~------~~~wr--- 147 (443)
.++...+...-++.-+..+.-..+.-.+.-....+++-|.+......+.+.|..++..+.-.+... ..+|.
T Consensus 130 ~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~ 209 (510)
T KOG3574|consen 130 LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQ 209 (510)
T ss_pred CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCcc
Confidence 234444444555666666777777778888888888988888888888888887777665444331 11222
Q ss_pred ------HHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhcc
Q 013431 148 ------YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK 221 (443)
Q Consensus 148 ------~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (443)
.-.++.+.+.++.-.+..+..+++... .+ ++
T Consensus 210 g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~---------------------------------~~----~e------ 246 (510)
T KOG3574|consen 210 GFITLAGYLWFWGALFIVATTLVALLKKENDES---------------------------------VD----EE------ 246 (510)
T ss_pred ceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh---------------------------------hh----hh------
Confidence 112233333344333333333322100 00 00
Q ss_pred ccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 013431 222 SSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAV 301 (443)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 301 (443)
.+.......+-++++++-|..+.+.......-+.+.+ .....+.-+.+.|.+. +..++......-..++.....|
T Consensus 247 ~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a----~da~t~LkLle~Gv~k-e~Lal~~v~~~plqI~l~~~~g 321 (510)
T KOG3574|consen 247 LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQA----ADALTSLKLLEHGVPK-EELALIAVPLVPLQIALPLYIG 321 (510)
T ss_pred hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhh----hhhccchHHHHcCCCh-hHheeeeeehhhHHHhhhhhhe
Confidence 0000111122456777777666555444333332222 3334445567788887 4444443433344444444444
Q ss_pred HhhcccCCc----eEEehhhHHHHHHHHHHHHHHHHhc---cch---hHHHHHHHHHHHHHhhccccceeeeeecccCcc
Q 013431 302 AKVDDLGRR----PLLIGGVCGIALSLLLLSAYYKILG---GFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 371 (443)
Q Consensus 302 ~l~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 371 (443)
++.....+- |.+..-+....+...+......... ..+ .......-.+...+........++..+++.|+.
T Consensus 322 k~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~ 401 (510)
T KOG3574|consen 322 KWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPA 401 (510)
T ss_pred eecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc
Confidence 443321110 0111112222222222221111111 001 111111111222222222222336777888999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 013431 372 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 403 (443)
Q Consensus 372 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 403 (443)
..|+.+.+.|+..++|+-.-..+..++.|..+
T Consensus 402 iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 402 IGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred cCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 99999999999999999888888888877543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-05 Score=72.04 Aligned_cols=109 Identities=21% Similarity=0.333 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHhcc---ch------HHHHHHHHHHHhhhhhhhchhhhhHhhhcCccc---chhhHHHHHHHHH
Q 013431 58 RELIIAAVLYALGALTTAYA---PG------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFI 125 (443)
Q Consensus 58 ~~l~~~~~~~~i~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 125 (443)
|++.++.++..+|.++..++ ++ .+.++++-.+.++|.|..-|...++++|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57788888888888884443 22 368899999999999999999999999999865 4677888999999
Q ss_pred HHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 126 VLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 126 ~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
++|..++..+.+++-++. +|.+.|.+.++..++..+.++.-
T Consensus 82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999987777 99999999998888776655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-06 Score=79.37 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=98.8
Q ss_pred hHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc----cCCceEEe-hhhHHHHHHHHHHHHHHHHhcc
Q 013431 263 VLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLI-GGVCGIALSLLLLSAYYKILGG 336 (443)
Q Consensus 263 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 336 (443)
...|+..++.+ .|.+. ...+.+..+.-+...+.-++.|+++|| +||||..+ ++....+++..++......+..
T Consensus 28 ~~~~l~~fyt~~~Gl~~-~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~ 106 (460)
T PRK11462 28 VMLYMMFFYTDIFGIPA-GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMN 106 (460)
T ss_pred HHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcc
Confidence 44555555555 46655 888999999999999999999999997 47766554 4545555555443321100011
Q ss_pred chhH-HHHHHHHHHHHHhhccccceeeeeecccC-ccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-------cchh
Q 013431 337 FPLV-AVSALLLYVGCYQISFGPISWLMVSEIFP-LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-------AENI 407 (443)
Q Consensus 337 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-------~~~~ 407 (443)
.... ..+..+++..++.....|-. ++..|+.+ +++|++..+.-.....+|..+++.+..++.+..| |...
T Consensus 107 ~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~ 185 (460)
T PRK11462 107 GKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG 185 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 1112 22222333334443333333 66777655 6889999999998889888888887766665543 3333
Q ss_pred hhHHHHHHHHHHHHhhhccccC
Q 013431 408 FLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
..+++++.+++..+++...+|+
T Consensus 186 ~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 186 IAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHhcceec
Confidence 4444444444444444444554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-08 Score=97.95 Aligned_cols=145 Identities=18% Similarity=0.065 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccce
Q 013431 281 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 360 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (443)
..++......++..+|+++.|+++||+|||+.+..+..+..++.++..+... ..+...+...-++.|.......+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---YNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccc
Confidence 4577888889999999999999999999999999998888888877765310 0133333333333444444444566
Q ss_pred eeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh---hccchhhhHHHHHHHHHHHHhhhccccC
Q 013431 361 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL---LGAENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 361 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
..++.|..|+++|+...++.+....+|..++..+.-...+. .+|+..+...++..++..+ ...+.||+
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 68999999999999999998888877777666554333222 2366666655555544333 33445543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-05 Score=71.07 Aligned_cols=159 Identities=21% Similarity=0.111 Sum_probs=93.0
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 013431 266 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 345 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (443)
|.-...++.|++. .+.+.++........+.+.+.|.++||+|||+..+...++..++.+.--. ++....+..=
T Consensus 56 Y~Y~LY~~yg~~~-~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------~~~~~L~~GR 128 (354)
T PF05631_consen 56 YLYALYESYGFSE-HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------SNYPVLLLGR 128 (354)
T ss_pred hhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------cccHHHHHHH
Confidence 3334457788877 77888888888899999999999999999999877666666555543221 2222222222
Q ss_pred HHHHHHHhhccccceeeeeec----ccCccccchhHHHHHHH-HHHHHHHHHHhhHHHHHhhcc--chhhhHHHHHHHHH
Q 013431 346 LLYVGCYQISFGPISWLMVSE----IFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGA--ENIFLLFAAIAFLA 418 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~ 418 (443)
++.+......+..-=.=++.| -+|++..+...+..... +.+..+.+..+...+.+..+. ..+|.....+.+++
T Consensus 129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA 208 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 332222222222110012223 34555555555555533 334445555555566666654 67787777777777
Q ss_pred HHHhhhccccCCC
Q 013431 419 VLFIVRTVPETKG 431 (443)
Q Consensus 419 ~~~~~~~~~~~~~ 431 (443)
.++.....+|..+
T Consensus 209 ~~~I~~~W~ENyg 221 (354)
T PF05631_consen 209 AVLILKTWPENYG 221 (354)
T ss_pred HHHHHhcccccCC
Confidence 7766655666544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-05 Score=70.26 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=125.2
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHH
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIAD-FLGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLY 90 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~ 90 (443)
.|.=.+-||+|..|...++.....|..++....|++.. |.++|+.-.+++...+++..+.. ..++.+.+...-++.
T Consensus 232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~ 311 (403)
T PF03209_consen 232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLL 311 (403)
T ss_pred CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 35556779999999999999999999999999999887 67888888888888777766644 457889999999999
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC---------ccchHHHHhhhhHHHHHHH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWRYMYGLSAPLALLMG 161 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---------~~~wr~~f~~~~~~~~~~~ 161 (443)
|++.|.......+...|..++++.|..+|.+.....++..++..+++.+.|. ..++-.+|.+.++..++.+
T Consensus 312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~ 391 (403)
T PF03209_consen 312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAAL 391 (403)
T ss_pred HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876542 1256667777776666555
Q ss_pred HHHh
Q 013431 162 IGMW 165 (443)
Q Consensus 162 ~~~~ 165 (443)
++..
T Consensus 392 ~ll~ 395 (403)
T PF03209_consen 392 VLLG 395 (403)
T ss_pred HHHH
Confidence 4443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00065 Score=64.30 Aligned_cols=117 Identities=13% Similarity=0.038 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc---------c----------------
Q 013431 25 TFRLFSLALCGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------P---------------- 78 (443)
Q Consensus 25 s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------~---------------- 78 (443)
+++.+..+=....+ ...+......+++||++|++++-+....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44556666665555 445568889999999999998887777666666655542 1
Q ss_pred ------hHHHHHHHHHHHhhhhhhhch-hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccC
Q 013431 79 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 141 (443)
Q Consensus 79 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 141 (443)
+.|.+.+..+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.+++..+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333333333333 457788999999999999999999999999999988887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=73.95 Aligned_cols=158 Identities=13% Similarity=0.007 Sum_probs=104.3
Q ss_pred HHHh--cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCC-ceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 013431 270 ILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL 346 (443)
Q Consensus 270 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (443)
|+++ .+.+. +..|+......++..++++..|+...|.+. |+.++.+.++..++.++.......++...+..++.-+
T Consensus 60 Yl~~lD~~A~~-~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~ 138 (488)
T KOG2325|consen 60 YLQKLDPTATA-TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARI 138 (488)
T ss_pred hhhhcCCCCCc-chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4454 44444 778999999999999999999999999886 7888888888888888875554433222222222222
Q ss_pred HHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH---h---------h-ccchhhhHHHH
Q 013431 347 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---L---------L-GAENIFLLFAA 413 (443)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~---------~-g~~~~~~~~~~ 413 (443)
+ .+.+.+.....-.|+++..-.+.|.++++..+...-+|..+||.+...+.. . + -|..+-++.+.
T Consensus 139 l--~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i 216 (488)
T KOG2325|consen 139 L--TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAI 216 (488)
T ss_pred H--cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHH
Confidence 2 222222333445788887667888898888887777777777765433321 1 0 14456677777
Q ss_pred HHHHHHHHhhhccccCC
Q 013431 414 IAFLAVLFIVRTVPETK 430 (443)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (443)
+.++..++.....+|.+
T Consensus 217 ~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 217 LWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHHHHHHHHHhheeecc
Confidence 77777777777666643
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.8e-05 Score=69.00 Aligned_cols=126 Identities=15% Similarity=0.056 Sum_probs=74.3
Q ss_pred CCcchhhhh--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHH-HHHHHHHHHHHHhccc------
Q 013431 13 CSRPSLVAQ--LGSTFRLFSLALCGSLYGALLGSILVYSIAD-----FLGRKRELII-AAVLYALGALTTAYAP------ 78 (443)
Q Consensus 13 ~~~p~i~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~~i~~~~~~~~~------ 78 (443)
-+.|-+-++ -+.|.+|.+...-+ ...+. .-++|.++.| |+||||..++ .-.+.++..+..+..-
T Consensus 21 gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~ 98 (544)
T PF13000_consen 21 GSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLF 98 (544)
T ss_pred ccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhcc
Confidence 367888888 78899887753221 12221 2567777777 8999986554 3333333333332211
Q ss_pred ----------------hH--HHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc
Q 013431 79 ----------------GL--GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 140 (443)
Q Consensus 79 ----------------~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 140 (443)
+. ..+...-++.=+-.+.-..++-.+.-....+++++.+..-...+.+.|..++..+.-.+-
T Consensus 99 ~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 99 DGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred cccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 11 122222323333344455566666667778888988888888888888888776655443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=54.33 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=45.3
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 67 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 67 (443)
|...++.|+|+.|+|.+.++..+...++.+++|.++||+|+++.++......
T Consensus 24 ~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 24 PLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4455678999999999999999999999999999999999988877765543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-06 Score=78.63 Aligned_cols=132 Identities=17% Similarity=0.071 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccch----HHHHHHHHHHHhhh-hhhhchhhhhHhhhcCcccch
Q 013431 40 ALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG----LGVLLVGRLLYGLG-IGLAMHGAPLYIAETCPSQIR 114 (443)
Q Consensus 40 ~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~----~~~l~~~r~l~G~~-~~~~~~~~~~~i~~~~~~~~r 114 (443)
+..+-.+...+.|+.|||++.+.+.+++.+..+..+...| -..+++...+..+. .-+-......+-+|.+|.+-|
T Consensus 361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR 440 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR 440 (538)
T ss_pred cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence 3345556677899999999999999999999999998766 12222332232222 112233444556899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccC-----CccchHHHHhhhhHHHHHHHHHHhcCCCChH
Q 013431 115 GTLISLKELFIVLGILLGYFVGSFQIN-----AVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 172 (443)
Q Consensus 115 ~~~~~~~~~~~~~G~~~g~~l~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 172 (443)
+..-|+..+..-.|.++|.....++.+ .. +-|++|++.+...++..+..+++||+.+
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEeecccc
Confidence 999999999999999999999888877 44 8899999999999999888889998753
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=71.15 Aligned_cols=153 Identities=19% Similarity=0.126 Sum_probs=97.6
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHHhcc--c-hhHHHHHH
Q 013431 270 ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG--F-PLVAVSAL 345 (443)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 345 (443)
+.+..+.++ ..+...........-+..+++|+++|+ +|+++.+..+.++..++..++.+....... . ....+..+
T Consensus 14 l~~~lg~~~-~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL 92 (654)
T TIGR00926 14 FLNFLGFSE-STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL 92 (654)
T ss_pred HHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence 344456665 555556666666667778889999996 799999988888877777766542110000 0 11122222
Q ss_pred HHHHHHHhhccccceeeeeecccCcc---ccchhHHHHHHHHHHHHHHHHHhhHHHHHhh-------ccchhhhHHHHHH
Q 013431 346 LLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELL-------GAENIFLLFAAIA 415 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~ 415 (443)
.+ ..+...+.-|...+...|.++++ .+.....+.....++|+.+++.+.+++.+.. +|...|.+.+++.
T Consensus 93 aL-ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m 171 (654)
T TIGR00926 93 AL-IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM 171 (654)
T ss_pred HH-HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence 22 22333333344447777777643 3667778888889999999999999887553 4777787777777
Q ss_pred HHHHHHhhh
Q 013431 416 FLAVLFIVR 424 (443)
Q Consensus 416 ~~~~~~~~~ 424 (443)
+++.++...
T Consensus 172 ~ia~lvf~~ 180 (654)
T TIGR00926 172 ILALIVFMA 180 (654)
T ss_pred HHHHHHHHH
Confidence 777665544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0083 Score=54.60 Aligned_cols=116 Identities=14% Similarity=-0.081 Sum_probs=56.0
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHhhc
Q 013431 280 ADATRVSVV-IGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQIS 355 (443)
Q Consensus 280 ~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 355 (443)
......... ..+...+|.+...+.-+ ..+|.+.+..+.=....-++.+....+ --.+..+........+..++-
T Consensus 282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~--~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 282 WYALLLVFLSFNVFDLIGSILAALLTW--PDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhhcccC--CCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 344444455 67888888666655433 333444333333222222222111100 011223333444455555555
Q ss_pred cccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 356 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 356 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
...+.+.+..+..|++++-.+-.+....-..|...| .+.+++
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G-~~~s~l 401 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALG-SLLSWV 401 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence 566677788888887776665455444444444433 334443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.3e-05 Score=51.32 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=54.7
Q ss_pred HHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhH
Q 013431 252 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 318 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 318 (443)
.++..++......-|.|.++++.|.+. .+.+.+..+..+..+++.++.|.++||.++++.......
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 344444555567788999999999987 899999999999999999999999999999887765443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0097 Score=55.17 Aligned_cols=150 Identities=14% Similarity=0.029 Sum_probs=101.1
Q ss_pred hhhhhhcc---hhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc---------ch----
Q 013431 17 SLVAQLGS---TFRLFSLALCGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------PG---- 79 (443)
Q Consensus 17 ~i~~~~~~---s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------~~---- 79 (443)
.+.|.+.+ +++.+.++-+...+ ...+..++.+++.+++.|++++-.-+..+....+++++. ++
T Consensus 48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~ 127 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFS 127 (509)
T ss_pred HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHH
Confidence 34555543 45567888888888 778889999999999999999988887777777777652 11
Q ss_pred -------------------HHHHHHHHHHHhhhhhhhch-hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 013431 80 -------------------LGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 139 (443)
Q Consensus 80 -------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 139 (443)
.|...+...+.=+-.+.... .-.....|.++.+|-.|..++++.+.+++..++..+..++
T Consensus 128 ~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 128 RDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333333333333333 4456778999999999999999999999999999998887
Q ss_pred cCCccc---------hHHHHhhhhHHHHHHHHHHhc
Q 013431 140 INAVGG---------WRYMYGLSAPLALLMGIGMWS 166 (443)
Q Consensus 140 ~~~~~~---------wr~~f~~~~~~~~~~~~~~~~ 166 (443)
..+... -+..+.+.+..+++.+.+.++
T Consensus 208 ~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~ 243 (509)
T COG3202 208 SKHRDALASEFKDLLLQILFIVIVILGIIAILLYRY 243 (509)
T ss_pred hhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654322 233444444444444444443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00051 Score=57.96 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhcccC----CccchHHHHhhhhHHHHHHHHHHhcC
Q 013431 112 QIRGTLISLKELFIVLGILLGYFVGSFQIN----AVGGWRYMYGLSAPLALLMGIGMWSL 167 (443)
Q Consensus 112 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----~~~~wr~~f~~~~~~~~~~~~~~~~~ 167 (443)
|+|+..+.....+.++|.++....--.-.+ ...+|++++.+.+++.++.+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777788888888776554322101 11279999999888887766655543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00041 Score=65.48 Aligned_cols=157 Identities=21% Similarity=0.172 Sum_probs=90.9
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC----CceE-EehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 268 GPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG----RRPL-LIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
+.+.++.+.++ .+...+.....+. -...++.|.++|-+. |||. +.++..+..++...+..... ...+.....
T Consensus 14 ~~l~~~l~ls~-~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~-~~~s~~~~~ 90 (433)
T PF03092_consen 14 PFLKDDLGLSP-AQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA-SESSAAIAV 90 (433)
T ss_pred HHHHHHcCCCH-HHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-ccchhhhHH
Confidence 33455577766 4444444444333 334678899999873 4444 34444444344444433221 011122222
Q ss_pred HHHHHHHHHHhhccccceeeeeecccC--ccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHH
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFP--LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 420 (443)
...++...+....- ....++..|... ++.+|...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..+
T Consensus 91 ~~l~la~~g~a~~D-V~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 91 VLLFLASFGYAFAD-VAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 22222222222222 233355556542 223777788888889999999999999999999999999888877777766
Q ss_pred Hhhhcccc
Q 013431 421 FIVRTVPE 428 (443)
Q Consensus 421 ~~~~~~~~ 428 (443)
......+|
T Consensus 170 ~~~~~~~e 177 (433)
T PF03092_consen 170 VALFLLEE 177 (433)
T ss_pred HHHHhhhh
Confidence 55665555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0004 Score=63.25 Aligned_cols=121 Identities=16% Similarity=0.047 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccc-
Q 013431 280 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGP- 358 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 358 (443)
..+-+...++.+..++..+.+-|+.||+|-|.....+.....++..+=.......-++... . .....+........+
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~-~-~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFR-R-PLTHTGQSIAAAAQPF 156 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccch-h-hhhHHhHHHHHHhhhH
Confidence 6677888888999999999999999999999999888887777666544322110011111 1 111222222211111
Q ss_pred ---ceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 013431 359 ---ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 402 (443)
Q Consensus 359 ---~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 402 (443)
++.-...--+|+++|+++..+..+.+.+|.+++-.+-..+..+.
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 22122334589999999999999999999988887776666543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.19 E-value=6e-05 Score=72.66 Aligned_cols=163 Identities=14% Similarity=0.016 Sum_probs=1.4
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhc-------
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG------- 335 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 335 (443)
...-++.+-++.++++ .+.|++.+..-++.++..++..++.+|.+|-|.+-.+.++++++.+++.+-....+
T Consensus 22 ~~~~lttiErRF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 22 VNSSLTTIERRFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 4445556666778877 89999999999999999999999999988888888888888888777654321100
Q ss_pred -------------------------------------cchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHH
Q 013431 336 -------------------------------------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 378 (443)
Q Consensus 336 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 378 (443)
......++...++.|..+....++..+|+.|..+++..+...|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 0012223333344444444455677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh---------------------hc-cchhhhHHHHHHHHHHHHhhhcc
Q 013431 379 LAVLTNFGSNAIVTFAFSPLKEL---------------------LG-AENIFLLFAAIAFLAVLFIVRTV 426 (443)
Q Consensus 379 ~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
+..+...+|-++|=.+.+...+. .| |+..|++.+.+.++..+....+.
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99988888877776666554321 12 55566667766666666555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0034 Score=49.43 Aligned_cols=110 Identities=13% Similarity=-0.031 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccee
Q 013431 282 ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISW 361 (443)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (443)
...-..+......+.+++.+.+.+++|.|+.+.++.++..+-...... ...+..+....+.+.+.+..+.+-.
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~aqg- 111 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWTAQG- 111 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhHhhh-
Confidence 344455556667777888889999999999998887776654444322 2344445555555555555555443
Q ss_pred eeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 013431 362 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 398 (443)
Q Consensus 362 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 398 (443)
.++.+...++.+++-.++.-.+.+.+..+|..+.-.+
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777887888899999988888877777776655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=55.78 Aligned_cols=120 Identities=10% Similarity=-0.020 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccc---------------------
Q 013431 280 ADATRVSVVIGVFKLVM-TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF--------------------- 337 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 337 (443)
+...++-+...+...+. .++.+++++|++|++............+.++++......+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 44555555554444444 78899999999999988776655555555555443211111
Q ss_pred -----hhHHHHHHHHHHHHHhhccc-cceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013431 338 -----PLVAVSALLLYVGCYQISFG-PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 338 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 400 (443)
.|... ...+..-.++.... -+.|.+.+|.+..++..+-.++....+++|..+++.+...+.+
T Consensus 123 i~~~~~W~~~-~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFA-LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11222222222223 3778999999999999999999999999999999988887763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0073 Score=59.26 Aligned_cols=182 Identities=13% Similarity=0.010 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 325 (443)
.+...+..+.+......+..-+..+=++.+..+ .+.|++....-++..+......+...|..|-+++-++.++++++.+
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~S-s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISS-SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC-CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 333334444443322334444444455567776 7788888888899999999999999999999999999999999888
Q ss_pred HHHHHHHHhc-------------------------------------------c---chhHHHHHHHHHHHHHhhccccc
Q 013431 326 LLSAYYKILG-------------------------------------------G---FPLVAVSALLLYVGCYQISFGPI 359 (443)
Q Consensus 326 ~~~~~~~~~~-------------------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~ 359 (443)
+..+-....+ . ..+..++...++.|....-..++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 8765421100 0 02334444445555555556667
Q ss_pred eeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh------------------hc-cchhhhHHHHHHHHHHH
Q 013431 360 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL------------------LG-AENIFLLFAAIAFLAVL 420 (443)
Q Consensus 360 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------~g-~~~~~~~~~~~~~~~~~ 420 (443)
..+|+.|...+++.....|+..++..+|-++|=.+.+..... .| |+..|++.+.+.++..+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 778999999989899999999988888877777666655432 12 45567777777777777
Q ss_pred Hhhhcccc
Q 013431 421 FIVRTVPE 428 (443)
Q Consensus 421 ~~~~~~~~ 428 (443)
.++++.++
T Consensus 338 p~f~fPk~ 345 (735)
T KOG3626|consen 338 PLFFFPKE 345 (735)
T ss_pred HHHhCccc
Confidence 66655443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00013 Score=65.55 Aligned_cols=111 Identities=9% Similarity=-0.155 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHhhcc
Q 013431 284 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-------GFPLVAVSALLLYVGCYQISF 356 (443)
Q Consensus 284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 356 (443)
.....+.++..+|+.+..+..-+..+++.+....+.=.+..-++......+. -.+....+..++..+..++..
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 3566788999999998887432211333333322222222211111111100 012233334444555555555
Q ss_pred ccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHh
Q 013431 357 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 394 (443)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 394 (443)
.+..+.+..+..++++|..+-.+....-..|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666788888888888877777776666666666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.035 Score=53.62 Aligned_cols=133 Identities=22% Similarity=0.120 Sum_probs=81.8
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHH-HHHHHH----hccchH-HHHHHHHHHHh
Q 013431 19 VAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELII-AAVLYA-LGALTT----AYAPGL-GVLLVGRLLYG 91 (443)
Q Consensus 19 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~-i~~~~~----~~~~~~-~~l~~~r~l~G 91 (443)
.--+|-+..+.+.+.++++.|.++|+.+++++.++.-|+....- .+.+.+ ++..+. ++.... ..++..-++.+
T Consensus 42 ~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 121 (521)
T PRK03612 42 SYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG 121 (521)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999988754333332211 111111 111111 111111 22334456678
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccC-CccchHHHHhh
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-AVGGWRYMYGL 152 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~~wr~~f~~ 152 (443)
+..|...|....+..+... ++-++..|-......+|.++|.++.+++.- ..+..+..+.+
T Consensus 122 ~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~ 182 (521)
T PRK03612 122 LLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT 182 (521)
T ss_pred HHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 8888888888777655332 234677888888999999999998877654 34223444443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.044 Score=48.89 Aligned_cols=145 Identities=23% Similarity=0.157 Sum_probs=85.4
Q ss_pred hHhhHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHH
Q 013431 263 VLYYAGPILQSAGFSAA-ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 341 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (443)
.....+.+..+.+.... ...+.......+...++.+..|++.||.|||+.+..+......+....... .......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 96 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA----PNVGLAL 96 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----ccchHHH
Confidence 44455555555554432 357788888888888888999999999999966655554322332222221 1111222
Q ss_pred HHHHHHHHHHHhhccccceeeeeecccCc-cccchhHHHHHH-HHHHHHHHHHHhhHHHHHh--hccchhhhHH
Q 013431 342 VSALLLYVGCYQISFGPISWLMVSEIFPL-RTRGRGISLAVL-TNFGSNAIVTFAFSPLKEL--LGAENIFLLF 411 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~ 411 (443)
........+.......+....+..|..|+ +.|+...+.... ....+..++|.+.+.+.+. .+|+..+...
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 22222222333333445556788888886 578888888777 5777778888666666554 3454434333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.12 Score=48.55 Aligned_cols=103 Identities=19% Similarity=0.309 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHHHHHHhcc------------------chHHHHHHHHHHHhhh
Q 013431 35 GSLYGALLGSILVYSIAD---FLGRKRELIIAAVLYALGALTTAYA------------------PGLGVLLVGRLLYGLG 93 (443)
Q Consensus 35 ~~~~~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~ 93 (443)
...+|..++..+.+.+.+ |+||++.+.++..+..++.++.-.+ +++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 334455555566666665 5899999999999888888877653 2466778888999999
Q ss_pred hhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 013431 94 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 138 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 138 (443)
.+......+.++.+.+ +++|..+.++...-..++..++-.....
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999 5788899988888877777776655444
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.25 Score=46.34 Aligned_cols=161 Identities=12% Similarity=-0.017 Sum_probs=88.5
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHH----HHHHHHHHHHHHHhcc--
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI----ALSLLLLSAYYKILGG-- 336 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-- 336 (443)
..+-.+.++.+..-++-.-.+.....-.+..++.+...|...||..|.+....+...- +++..++.........
T Consensus 21 w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~ 100 (432)
T PF06963_consen 21 WEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSS 100 (432)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 4455566666653333244566666677888888999999999999988766554322 2222222222211111
Q ss_pred -chh--HHHHHHHHHHHHHhh-ccccceee----eeeccc--CccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccch
Q 013431 337 -FPL--VAVSALLLYVGCYQI-SFGPISWL----MVSEIF--PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAEN 406 (443)
Q Consensus 337 -~~~--~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~--p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 406 (443)
+.+ ..........++..- .......+ ++..+. +++.....++.+.-+-.+...++|.+.|.+.+..++..
T Consensus 101 ~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~ 180 (432)
T PF06963_consen 101 QSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVI 180 (432)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 011 111111122222111 11111111 111122 34555666666666777789999999999999888777
Q ss_pred hhhHHHHHHHHHHHHhh
Q 013431 407 IFLLFAAIAFLAVLFIV 423 (443)
Q Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (443)
...+.++..+++..+=+
T Consensus 181 ~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 181 AAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666655433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.098 Score=48.23 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=89.4
Q ss_pred hhHHHHHHh--cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 265 YYAGPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 265 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
-|+..++.+ .+++..+...-+.-...=..++.-+....+.|..+.|++++.+.+...+...++.+. .....+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------~sv~~m 97 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------TSVLAM 97 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------CcHHHH
Confidence 344444444 566653333333333334555666677788999999999988877766666665542 233333
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh--ccchhhhHHHHHHHHHHH
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL--GAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~ 420 (443)
-..-++.+..... -...++++-...|+++--++.+........|..++..++-.+.... .+.....+..+...++.+
T Consensus 98 q~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~ 176 (412)
T PF01770_consen 98 QLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL 176 (412)
T ss_pred HHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3333333332222 1233355656668888889999999888888888887776666533 244444444444444444
Q ss_pred Hhhhc
Q 013431 421 FIVRT 425 (443)
Q Consensus 421 ~~~~~ 425 (443)
+.+++
T Consensus 177 ~~~fL 181 (412)
T PF01770_consen 177 IALFL 181 (412)
T ss_pred HHHHc
Confidence 44443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.046 Score=50.30 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH--HHHH---HHHHHHhccchHHHHHHHHHHHhhhhhhhch
Q 013431 25 TFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAA--VLYA---LGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 25 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~--~~~~---i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 99 (443)
..++..+...+|.+|-.++.--...+ |+ |++.+.+. .+.. +.....-+.+|.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 34566777777777766664322211 33 33333322 2222 2222333568999999999999999999999
Q ss_pred hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 013431 100 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 139 (443)
Q Consensus 100 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 139 (443)
.....+.|-.++++|-.+++..+.+.++|..++.+++-++
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.00094 Score=57.48 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhc
Q 013431 29 FSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 108 (443)
Q Consensus 29 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 108 (443)
.|.+.-.-.+...+..+....+.||+.--+-+.+...+.+.+..+.+++++.++=+.+-.+..++.|.....-.++-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 4566666677777788888889998765555556677788899999999999999999999999888776665554333
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-cchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 109 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 109 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
++ ....+-++.+.+.+.++|..--..+.+.. -+-|...++...+..+.....+++.++|
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 33 23344555555555566655444444421 1566666666655555555555443333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.037 Score=38.23 Aligned_cols=67 Identities=18% Similarity=0.037 Sum_probs=56.6
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 330 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
++-.+|...++.+++. .+.+++.+...++.++|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 11 yTplLP~M~~~~~ls~-~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSL-SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHhHhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888876 899999999999999999999999998888888888888777777777653
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.032 Score=51.80 Aligned_cols=113 Identities=12% Similarity=-0.072 Sum_probs=69.8
Q ss_pred EehhhHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHhhccccceeeeeecccCcc---ccchhHHHHHHHHHH
Q 013431 313 LIGGVCGIALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFG 386 (443)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~ 386 (443)
+.++.++..++.+++......... .....+...+.+......+.-|....+..|.++++ +|.+.........++
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~ 83 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI 83 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 345556666666664443221110 01122222233333344444455557777877755 456666778888999
Q ss_pred HHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhc
Q 013431 387 SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 425 (443)
Q Consensus 387 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
|+.+++.+.+++.++.||...|.+.++..+++.+..+.-
T Consensus 84 G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 84 GSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999888888877765544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.43 Score=46.29 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=34.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhHHHHH-hhccchhhhHHHHHHHHHHH
Q 013431 373 RGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 373 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~ 420 (443)
.+...|-.+....+|+.+|+.+.+.+.- ..|.....++.+.+.++.++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4666788888899999999999887654 67765555555555544443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.016 Score=53.19 Aligned_cols=133 Identities=19% Similarity=0.082 Sum_probs=81.7
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc----cCCceEEehhh-HHHHHHHHHHHHHHHH--
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLIGGV-CGIALSLLLLSAYYKI-- 333 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 333 (443)
..-..|.|.++++.|... ...+......-+.+++.+++.|..+|| +||||..+... ...+++++++......
T Consensus 49 A~elsy~tPyl~~lGvph-k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~ 127 (498)
T KOG0637|consen 49 ALELSYLTPYLQSLGVPH-KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGL 127 (498)
T ss_pred HHHhccccHHHHHcCCCc-ccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhH
Confidence 346678899999999887 566666677778888889999999997 68888776543 4445555554433221
Q ss_pred ---hccch---hHH----HHHHHHHHHHHhhccccceeeeeecccCccccch-hHHHHHHHHHHHHHHHHHhh
Q 013431 334 ---LGGFP---LVA----VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR-GISLAVLTNFGSNAIVTFAF 395 (443)
Q Consensus 334 ---~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~g~~~~~~~~ 395 (443)
++... ... ++..-++-........|.- ++..|+..++.+.+ +++.......+|+.+|=.+.
T Consensus 128 ~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 128 LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 11111 111 1111222223333444444 67778776666666 88888777777776554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.11 Score=44.45 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEeh
Q 013431 269 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 315 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 315 (443)
++.+.+++.. .+.+.+........++.+.+.|-+.||.|||+.-+.
T Consensus 62 yLYstYgFgk-G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvt 107 (454)
T KOG4332|consen 62 YLYSTYGFGK-GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT 107 (454)
T ss_pred eeehhcCccC-CccceeeecccchHHHHHHHHHHHHhhhccccceee
Confidence 3456667766 566666666666677778888999999999987654
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.56 E-value=2.4 Score=41.62 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=95.3
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHHhcc--------
Q 013431 266 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG-------- 336 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 336 (443)
...++....+... ..+.-.............+.+++++|. .||.+.+.++.++...+..++.........
T Consensus 60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 3334444455555 555566666666777777889999996 578888888777777776655544332210
Q ss_pred ------ch-----hHHHHHHHHHHHHHhhccccceeeeeecccC----ccccc--hhHHHHHHHHHHHHHHHHHhhHHHH
Q 013431 337 ------FP-----LVAVSALLLYVGCYQISFGPISWLMVSEIFP----LRTRG--RGISLAVLTNFGSNAIVTFAFSPLK 399 (443)
Q Consensus 337 ------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~~~~~~~g~l~ 399 (443)
.. ...+............+.-|...++-.|-++ .+.+. .-+.......+.|..++..+.-+..
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 00 0111111122222223333444466666666 22223 4556667778888888888888888
Q ss_pred HhhccchhhhHHHHHHHHHHHHhhh
Q 013431 400 ELLGAENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 400 ~~~g~~~~~~~~~~~~~~~~~~~~~ 424 (443)
+..||...|-+..+...++.+++..
T Consensus 219 ~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hcccceeeccHHHHHHHHHHHHHHc
Confidence 8899998888888777776665443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.5 Score=42.02 Aligned_cols=109 Identities=11% Similarity=-0.059 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhc----c----------------------chhHHHHHH
Q 013431 292 FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG----G----------------------FPLVAVSAL 345 (443)
Q Consensus 292 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------------~~~~~~~~~ 345 (443)
+.++...+..++++++++.++...........+.++++...... + ..|......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 44556677889999999998876655555555555544332110 0 011111111
Q ss_pred HHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013431 346 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 400 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 400 (443)
+..-.......+-+.|.+.+|..+.++..+-+++.....++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222233568899999999999999999999999999999988887777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.1 Score=38.81 Aligned_cols=122 Identities=18% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh------cc------chHHHHHHHHHHHhhhhh--hhchhhh
Q 013431 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA------YA------PGLGVLLVGRLLYGLGIG--LAMHGAP 102 (443)
Q Consensus 37 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~------~~------~~~~~l~~~r~l~G~~~~--~~~~~~~ 102 (443)
.....+..++.|...|+..|+|++...+.+.-++.+.++ +. .+++.+..+-++.-.-.+ -....+.
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~ 152 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG 152 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345567788889999999999999887665444433332 22 245555555444322211 1111121
Q ss_pred --hHhhhcC----cccchhhHH---HHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHH
Q 013431 103 --LYIAETC----PSQIRGTLI---SLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 159 (443)
Q Consensus 103 --~~i~~~~----~~~~r~~~~---~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~ 159 (443)
..-.||. ..+.+.... +..-..-..-..+.|.+.+.++... +-|..-...++-.++
T Consensus 153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv-sl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV-SLRASAGTFAAWALV 217 (503)
T ss_pred eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceee-chhhhhhhhHHHHHH
Confidence 1223443 223333333 5566666777889999998887766 667654444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.54 E-value=7.5 Score=36.83 Aligned_cols=122 Identities=12% Similarity=-0.045 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhc---------------cch-----
Q 013431 280 ADATRVSVVIGV-FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG---------------GFP----- 338 (443)
Q Consensus 280 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~----- 338 (443)
+...++-...-+ ++++..++..++.++..+.++...........++++++...... ..+
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 455555555444 66777888889999999988876655555555555554433100 011
Q ss_pred -------hHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 013431 339 -------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 401 (443)
Q Consensus 339 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 401 (443)
|.........-.-.+...+-+.|...+|....++..+-+++.+...+++..++..+..++.++
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222222222223335678889999999999999999999999999998888877663
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.39 E-value=6 Score=36.23 Aligned_cols=139 Identities=17% Similarity=0.069 Sum_probs=61.0
Q ss_pred HHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-----ccCCceEEeh-hhHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-----DLGRRPLLIG-GVCGIALSLL 325 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~-~~~~~~~~~~ 325 (443)
.+..+..-++... -.|.+++..+.+- .+.+....... -.---++..++.| |+||||..+. +..+....+.
T Consensus 39 LYllQGiP~GL~~-~iP~lL~ak~vSy-t~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ml 114 (510)
T KOG3574|consen 39 LYLLQGIPLGLIG-AIPLLLQAKGVSY-TSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFML 114 (510)
T ss_pred HHHHcCCchhHhh-hhHHHhcCCCcch-hhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHH
Confidence 3334434443333 7888888665543 22222221111 0111344555666 9999987765 3334343333
Q ss_pred HHHHHHHH----hccchhHHHH--HHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhh
Q 013431 326 LLSAYYKI----LGGFPLVAVS--ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 395 (443)
Q Consensus 326 ~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 395 (443)
.+...... ....+..... .+.++.+....--. ....+.-.+..+++.|-++.........|.+++..++
T Consensus 115 lLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDI-AVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 115 LLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDI-AVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhh-hhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 33321110 0011111111 11222222111111 1113333455667777776666666666666665554
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.08 E-value=1.9 Score=38.02 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 013431 64 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 139 (443)
Q Consensus 64 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 139 (443)
-.++.+...+..+.++++..++.-+..|+-.|..++...--+.+-.++++|-.+++....+.++|..++..++-.+
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3444555556677899999999999999998988888888788878889999999999999999999998887654
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.52 E-value=4.2 Score=38.56 Aligned_cols=109 Identities=19% Similarity=0.201 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHH---HHHHHHHHhc---------cchHHHHHHHHHHHhhhhh
Q 013431 29 FSLALCGSLYGALLGSILVYSIADFLGRK-RELIIAAVL---YALGALTTAY---------APGLGVLLVGRLLYGLGIG 95 (443)
Q Consensus 29 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr-~~l~~~~~~---~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~~ 95 (443)
.-.....+.++-.+|..+..+.. .-++| +.+.+..++ +.-..++|.. -++-+..++..++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34566677777777766554321 11222 133322222 2223334432 2467778888999999999
Q ss_pred hhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 013431 96 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 138 (443)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 138 (443)
-..+....+..+..+++||..+..+...+..+|..+|..++-.
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.47 E-value=11 Score=34.86 Aligned_cols=46 Identities=2% Similarity=-0.164 Sum_probs=20.9
Q ss_pred CchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHH----HHHHHHHHHhhcc
Q 013431 259 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFK----LVMTWIAVAKVDD 306 (443)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~l~d~ 306 (443)
.++.+.+-.+++.++.-..+. .........+.+ ++....-.++..|
T Consensus 33 pWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 33 PWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred chHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666655444432 333333333443 4444444444444
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.88 E-value=39 Score=30.48 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCc
Q 013431 37 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCP 110 (443)
Q Consensus 37 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 110 (443)
.+..+.+.++.+.+.+++|-|.++.++...+...- ..=+=+.+..++-.-...|++.+..+..--+++++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 44556677777799999999999998887765432 22234678899999999999999999888887776654
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.23 E-value=9.5 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHH
Q 013431 29 FSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVL 66 (443)
Q Consensus 29 ~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~ 66 (443)
.++-.+.-+++..+.....||+.||| |.+++.++..++
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45556677777888888889999997 666654444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 443 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-27 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 443 | |||
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 4e-08 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 9e-04 |
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 13/181 (7%)
Query: 1 MTLVPPLA----LPSHCSRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGR 56
+ V +A +P+ + L + L + + I+D +GR
Sbjct: 8 LVAVGQMAQTIYIPAI---ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64
Query: 57 KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT 116
+ +++ ++ L L L VL+ + G+G G+ A +
Sbjct: 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH 124
Query: 117 LISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-----SLPPSP 171
SL + I++ LL +G ++ + WR Y L + M + P
Sbjct: 125 ANSLLNMGILVSPLLAPLIGG-LLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA 183
Query: 172 R 172
Sbjct: 184 P 184
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 9e-04
Identities = 16/110 (14%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 54 LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQI 113
+G K L++A + ++ + +++A +++ + L+ + + G YI +
Sbjct: 286 IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345
Query: 114 RGTLISLKELFIV-LGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 162
T+ + F L ++ + ++ G++ Y + +AL +
Sbjct: 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTL 394
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.48 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.46 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.4 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.39 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.37 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.25 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=343.31 Aligned_cols=408 Identities=32% Similarity=0.574 Sum_probs=316.3
Q ss_pred CCcchhhhhhc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh---------
Q 013431 13 CSRPSLVAQLG--------STFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA--------- 75 (443)
Q Consensus 13 ~~~p~i~~~~~--------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--------- 75 (443)
...|.+.++++ .+.++.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~ 112 (491)
T 4gc0_A 33 GTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSI 112 (491)
T ss_dssp GTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCS
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45677777773 3456789999999999999999999999999999999999999999999998
Q ss_pred ---------ccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC----
Q 013431 76 ---------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---- 142 (443)
Q Consensus 76 ---------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---- 142 (443)
+++|+++++++|+++|++.|...+....++.|+.|+++|++..++.+.+..+|.++++.++......
T Consensus 113 ~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (491)
T 4gc0_A 113 NPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS 192 (491)
T ss_dssp SSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred cchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999887665432
Q ss_pred ---ccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHh
Q 013431 143 ---VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS 219 (443)
Q Consensus 143 ---~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (443)
..+||..+.+..++.++..+..+++||||+|+.. +++.|++.+.+++.+.++..+ ++..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~---------~~~~~~a~~~l~~~~~~~~~~----~~~~~~--- 256 (491)
T 4gc0_A 193 WLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS---------RGKQEQAEGILRKIMGNTLAT----QAVQEI--- 256 (491)
T ss_dssp TTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH---------TTCHHHHHHHHHHHHHHHHHH----HHHHHH---
T ss_pred cccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH---------cCchhHHHHhHHHhcCCchhH----HHHHHH---
Confidence 1268999999999999888888999999999987 344555555555443321100 000000
Q ss_pred ccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH
Q 013431 220 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI 299 (443)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (443)
++..+++++.......++ .++..+......+....+...+.+|.+.+.+..+... ..........++..+++.++
T Consensus 257 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4gc0_A 257 -KHSLDHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST-DIALLQTIIVGVINLTFTVL 331 (491)
T ss_dssp -HHHHHHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc-cchhhHHHHHHHHHHHHHHH
Confidence 000011111111112222 2344555556667777778888889999988888766 56667777888999999999
Q ss_pred HHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHH
Q 013431 300 AVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 379 (443)
Q Consensus 300 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 379 (443)
.+++.||+|||+.+..+.....++.+.+...... .......+....+...++..+..++.+.+.+|++|++.|+++.|+
T Consensus 332 ~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 332 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHH
T ss_pred HHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 9999999999999988888877777666544332 233344455555566667777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHH------hhccchhhhHHHHHHHHHHHHhhhccccCCCCCHHHHHhhhh
Q 013431 380 AVLTNFGSNAIVTFAFSPLKE------LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 442 (443)
Q Consensus 380 ~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (443)
.+..+++++.+++.+.+.+.+ ..+....+++++++++++.++.+++.||+|++++||+|+..|
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 999999999999888766543 345667788889999999988889999999999999987554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=310.55 Aligned_cols=374 Identities=14% Similarity=0.089 Sum_probs=280.8
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----APGLGVLLVGRLL 89 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l 89 (443)
..|.+.+++ .+..+.|++.+.+.++..++++++|+++||+|||+++.++.++.+++.+++++ ++|++.++++|++
T Consensus 50 ~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 128 (451)
T 1pw4_A 50 AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128 (451)
T ss_dssp HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 367888999 99999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccc-hHHHHhhhhHHHHHHHH-HHhcC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG-WRYMYGLSAPLALLMGI-GMWSL 167 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-wr~~f~~~~~~~~~~~~-~~~~~ 167 (443)
.|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.. + ||+.|++.+++.++..+ ..+++
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999877766 7 99999999988877654 44668
Q ss_pred CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHH
Q 013431 168 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 247 (443)
Q Consensus 168 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
||+|+.... .+.+ +...+.+.+. +.+++++...++...++.+++|.++...+
T Consensus 208 ~~~~~~~~~----~~~~---------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (451)
T 1pw4_A 208 RDTPQSCGL----PPIE---------------------EYKNDYPDDY---NEKAEQELTAKQIFMQYVLPNKLLWYIAI 259 (451)
T ss_dssp CCSSTTTCC----CSCT---------------------TTCCC----------------CCTHHHHHHTSSCHHHHHHHH
T ss_pred cCCHhhcCC----CChh---------------------hhcccccccc---hhhhhcccccccchHHHHHcCHHHHHHHH
Confidence 887742100 0000 0000000000 00000001111112466778877776665
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCceEEehhhHHHH-HH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCGIA-LS 323 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~ 323 (443)
...+..+.. .....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||+ +||+.+..+..+.. ++
T Consensus 260 ~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 260 ANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 554444433 3467788888888 56655 7888999999999999999999999999 99887766655544 33
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHH-HHHHHHHhhHHHHHhh
Q 013431 324 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPLKELL 402 (443)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~ 402 (443)
.+++... .+.+........+..+.......+....+..|.+|++.|+++.|+.+...++ +..++|.+.|.+.+..
T Consensus 335 ~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 335 TIVYWMN----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHTTSC----CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHh----cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333221 1112222333333333333334444457889999999999999999999999 9999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHhhhcc
Q 013431 403 GAENIFLLFAAIAFLAVLFIVRTV 426 (443)
Q Consensus 403 g~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
|+...|++.+++.+++.++.+...
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 411 GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 998899888888777776555543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=293.15 Aligned_cols=346 Identities=16% Similarity=0.112 Sum_probs=271.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hccchHHHHHHHHHHHh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G 91 (443)
.|.+.+++|.++.+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++ ++++|++.++++|++.|
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc-CCccc------------------------h
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAVGG------------------------W 146 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~~------------------------w 146 (443)
++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+. +.... |
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999988 55423 9
Q ss_pred HHHHhhhhHHHHHHHHHHhc--CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccc
Q 013431 147 RYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 224 (443)
Q Consensus 147 r~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
|+.|++.+++.++..+..++ .||+++. + +++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------------------------~------------------~~~~ 242 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVALLIMLTKFPALQSD----------------------------N------------------HSDA 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCTTT----------------------------C------------------CCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccc----------------------------c------------------cccc
Confidence 99998877777666554433 3444310 0 0000
Q ss_pred cccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHH-HHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 013431 225 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-GFSAAADATRVSVVIGVFKLVMTWIAVA 302 (443)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 302 (443)
++++.+.++++++++|.++...+...+..... .....+.|.+ +++. +.+. .+.+.......++.+++.++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 243 KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGMTA-GFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTTCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCcch-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122345677888888887776655544433 3466788888 8776 5554 88899999999999999999999
Q ss_pred hhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHH
Q 013431 303 KVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 382 (443)
Q Consensus 303 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 382 (443)
+.||++||+.+..+..+..++.+++.. ...........+.. .......+..+++..|.+|++ ++++.++..
T Consensus 318 l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 318 LISRFAPHKVLAAYALIAMALCLISAF------AGGHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHH------cCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 999999999888877776666555443 12222233333333 333334456667778888866 888888877
Q ss_pred HHHHHHHHHHHhhHHHHHhhc-cchhhhHHHHHHHHHHH
Q 013431 383 TNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVL 420 (443)
Q Consensus 383 ~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 420 (443)
...+++.++|.+.|.+.|..| +...+.+.+++.++..+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 677999999999999999999 88888776555444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=280.28 Aligned_cols=402 Identities=13% Similarity=0.038 Sum_probs=257.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhc
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM 98 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 98 (443)
+|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3499999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcCcccc--hhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC-CCChHHHH
Q 013431 99 HGAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLL 175 (443)
Q Consensus 99 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~es~~~~~ 175 (443)
+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++. ++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 202 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLD--- 202 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCccccc---
Confidence 999999999999988 778888899999999999999999988877 99999999877776655544322 11110
Q ss_pred HhhhcCCCchhhHHHHHHHHHhh--------------hhcCCCCCCcchhhHHHHHHhcc----ccccccccccchhhhc
Q 013431 176 LRAVQGKGSLQEYKEQAISALGK--------------LRRRPPGDKLSERQIEDTLVSLK----SSYTDEKSEGSFLEVF 237 (443)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 237 (443)
+..++.+.+.+.++..+..+. ....+..+..+............ .....+++.....+..
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (491)
T 4aps_A 203 --PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL 280 (491)
T ss_dssp --SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred --ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 000011111111122221111 00011111111111000000000 0000000000001111
Q ss_pred cCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEe---
Q 013431 238 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI--- 314 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--- 314 (443)
+........+...+.+... .....+.|.+.++....+....+.......+..+++.++.+++.||++||+...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~ 356 (491)
T 4aps_A 281 RVVSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTK 356 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHH
Confidence 1112222332222222222 234556666776643333256677778888899999999999999999998766
Q ss_pred --hhhHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHH
Q 013431 315 --GGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA 389 (443)
Q Consensus 315 --~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 389 (443)
.+..+.+++...+....... .+.+........+..+.......+..+.+..|.+|++.|+++.|+.+....+|..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 357 FAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544332110 1123333333444444444444556678999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhccccCCCC
Q 013431 390 IVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 432 (443)
Q Consensus 390 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (443)
++|.+.+.+.+. ++...+...+++++++.++.+...++.+++
T Consensus 437 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 437 LNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877654 667778888887777777666665554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=275.40 Aligned_cols=336 Identities=14% Similarity=0.094 Sum_probs=256.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.|.+.+++|.++++.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|++.|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCCCChHH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPRW 173 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~~~ 173 (443)
+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++++.+.. +||+.|++.++..++..+ ..+.+||+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999999999999999999999999999999999988877 999999998888877665 44567776531
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
+.++++.+.++++.+|+|+++...+...+..
T Consensus 182 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (375)
T 2gfp_A 182 -------------------------------------------------DAPRTRLLTSYKTLFGNSGFNCYLLMLIGGL 212 (375)
T ss_dssp -------------------------------------------------TCCCCCTTTCSTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------CcccccHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0000112334667777777776665554444
Q ss_pred HHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH-HHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG-IALSLLLLSAYY 331 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~ 331 (443)
... .....+.|.++++ .+.++ .+.+.......++.+++.++.+++.||.+++ ...+... ...+...+....
T Consensus 213 ~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 213 AGI----AAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHH----HHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHH
T ss_pred HHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 433 2355666666665 45544 7788889999999999999999999998772 2222222 111111111111
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
. ..++.+.......+...+. ....+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..++...+..
T Consensus 286 ~-~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 286 F-GVMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred h-ccccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 0 0112222223333333333 3344556688889988 8999999999999999999999999999887776555554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-32 Score=256.26 Aligned_cols=364 Identities=13% Similarity=0.061 Sum_probs=237.1
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH---HHhccchH-HHHHHHHHHHhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL---TTAYAPGL-GVLLVGRLLYGLG 93 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~~~~~~-~~l~~~r~l~G~~ 93 (443)
+++++|.|+.+.|++.+.+.+++.++++++|+++||+||||++.++..+.++... .+.+++.. ..+...+.+.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999998887765322 12233222 1234566777766
Q ss_pred hhhhchhhhhHhhhcCcc--cchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 94 IGLAMHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ . +||+.|++.++..++..+..++.+|++
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 665555555555555543 456777788888889999999999998775 3 799999988877655555555554433
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
+. + .+ ++++ + +..+++....+.++++++|.++...+....
T Consensus 192 ~~---~---~~------------------~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T 2cfq_A 192 PS---S---AT------------------VANA-V---------------GANHSAFSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp SC---S---SC------------------SSSS-S---------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc---c---cc------------------cccc-c---------------ccccccccHHHHHHHhcCCchhhHHHHHHH
Confidence 10 0 00 0000 0 000001111234567777777655543322
Q ss_pred HHHHHHhCchhhHhhHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQSAGFSA---AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
..... ..+..+.|.++++..... ....+.......++.+++.++.+++.||++||+.+..+..+.++....+.
T Consensus 232 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 232 VSCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHH----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 22221 123344666655532211 13456777777788899999999999999999987766666555544332
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHH-HHHHHHHHHHHHHhhHHHHHhhccchh
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENI 407 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~ 407 (443)
. .++.+.......+.... .....+..+.+..|.+|++.|+++.+.. +....+|+.++|.+.|.+.+..|+...
T Consensus 308 ~-----~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 308 F-----ATSALEVVILKTLHMFE-VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp T-----CCSHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred H-----hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 2 12222222222222222 2222223347889999999999999994 778889999999999999998888888
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCCC
Q 013431 408 FLLFAAIAFLAVLFIVRTVPETKGLS 433 (443)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (443)
|.+.+++.+++.++.+...+|+++.+
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 88888888877776666666655544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=245.16 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=136.8
Q ss_pred chhhhhhc------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHH
Q 013431 16 PSLVAQLG------STFRLFSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGR 87 (443)
Q Consensus 16 p~i~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r 87 (443)
+.+.+++| .+..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34667788 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHH---HHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 164 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 164 (443)
++.|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++.+.+.. +||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 99999999999999999988776 89999999888877665554
Q ss_pred hc
Q 013431 165 WS 166 (443)
Q Consensus 165 ~~ 166 (443)
++
T Consensus 196 ~~ 197 (524)
T 2xut_A 196 WL 197 (524)
T ss_dssp HS
T ss_pred HH
Confidence 43
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-14 Score=133.65 Aligned_cols=180 Identities=16% Similarity=0.050 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 325 (443)
.....+..+........+..+.|.+.++. .+. .+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-hHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33333344443333344666778777777 555 7899999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-c
Q 013431 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-A 404 (443)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~ 404 (443)
+..+.... .++.+..+... ++.+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |
T Consensus 108 ~~~~~~~~-~~~~~~l~~~~-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w 185 (451)
T 1pw4_A 108 FMGFVPWA-TSSIAVMFVLL-FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 185 (451)
T ss_dssp HHHHCHHH-HSSSSHHHHHH-HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred HHHhhhhc-cccHHHHHHHH-HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 76542110 12333333333 333333334445556899999999999999999999999999999999999999998 9
Q ss_pred chhhhHHHHHHHHHHHHhhhccccC
Q 013431 405 ENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
+..|++.+++.++..++.++..+|+
T Consensus 186 ~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 186 HAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999998888777766665555554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=129.09 Aligned_cols=160 Identities=14% Similarity=0.027 Sum_probs=121.0
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhH
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 340 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (443)
.......|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++...... ..+..
T Consensus 43 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~ 118 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYT 118 (438)
T ss_dssp HHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred HhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---cccHH
Confidence 456667888888888887 88999999999999999999999999999999999988888887777632211 22333
Q ss_pred HHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH-Hhhc----------------
Q 013431 341 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-ELLG---------------- 403 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g---------------- 403 (443)
.+....++.+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..+
T Consensus 119 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (438)
T 3o7q_A 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhh
Confidence 33333334444444444455689999999999999999999999999999999999998 5444
Q ss_pred ---------cchhhhHHHHHHHHHHHHhhh
Q 013431 404 ---------AENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 404 ---------~~~~~~~~~~~~~~~~~~~~~ 424 (443)
|+..|.+.+++..+..++..+
T Consensus 199 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 199 AYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777666665555544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=126.45 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=128.0
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhH
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 340 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (443)
.......|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++....... + +..
T Consensus 17 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----S-SLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----H-HHH
T ss_pred HHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----c-cHH
Confidence 345566777778888776 788999999999999999999999999999999999888888877776653 1 222
Q ss_pred HHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHH
Q 013431 341 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 420 (443)
.+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+.+.++..++..+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33333333444444445566688899999999999999999999999999999999999988999999888887777766
Q ss_pred HhhhccccCC
Q 013431 421 FIVRTVPETK 430 (443)
Q Consensus 421 ~~~~~~~~~~ 430 (443)
......||++
T Consensus 170 ~~~~~~~~~~ 179 (375)
T 2gfp_A 170 SMARWMPETR 179 (375)
T ss_dssp CCCCSSCCCS
T ss_pred HHHHHCcccC
Confidence 5555566654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=127.48 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=118.3
Q ss_pred hhHhhHHHHHHh------cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHHh
Q 013431 262 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 334 (443)
Q Consensus 262 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (443)
....+.+.++++ .+.+. .+.++..+...++..++.++.|+++|| +|||+.+..+..+..++.++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 354556666655 56655 889999999999999999999999999 89999999888887777766654
Q ss_pred ccchhHHHHHHHHHHHHHhhccccceeeeeecccCccc--cchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHH
Q 013431 335 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 412 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 412 (443)
.++.+.... ..++.+.......+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||+..|.+.+
T Consensus 105 ~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 PFGASALFG-SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CCSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 123333333 3333333334444556688999999988 7778888889999999999999999999999999998887
Q ss_pred HHHHHHHHHhhh
Q 013431 413 AIAFLAVLFIVR 424 (443)
Q Consensus 413 ~~~~~~~~~~~~ 424 (443)
+..+++.+....
T Consensus 184 ~~~~~~~~~~~~ 195 (491)
T 4aps_A 184 IGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=121.56 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhH
Q 013431 25 TFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLY 104 (443)
Q Consensus 25 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 104 (443)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888889999999999999999999999998888888888888888888888888888877777778889
Q ss_pred hhhcCcccchhhHHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cCCCCh
Q 013431 105 IAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSP 171 (443)
Q Consensus 105 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~es~ 171 (443)
+.|.+|++.|+++.++ .+....+|..++|.+++++.+.. +++..|.+.+++.++..+..+ ..||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 48888999999999999988766 889999988888877766544 455543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=119.55 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=116.6
Q ss_pred hHhhHHHHHHh-cC------CCCchhHHHHHHHHHHHHHHHHHHHHHhhccc-CCceEEehhhHHHHHHHHHHHHHHHHh
Q 013431 263 VLYYAGPILQS-AG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKIL 334 (443)
Q Consensus 263 ~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (443)
...+.+.++++ .+ .+. .+.++......++..++.++.|+++||+ |||+.+..+..+..++.++....
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---- 105 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 45566666554 55 555 7889999999999999999999999999 99999888887777776665541
Q ss_pred ccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHH---HHHHHHHHHHHHHHhhHHHHHhhccchhhhHH
Q 013431 335 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 411 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (443)
+.+...+....++.+.......+...+++.|.+|+++|+++.+. .+....+|..++|.+.+.+.+..||+..|.+.
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 21223333333334444444555666889999999999877666 88889999999999999999989999999888
Q ss_pred HHHHHHHHHHhhh
Q 013431 412 AAIAFLAVLFIVR 424 (443)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (443)
+++.++..+....
T Consensus 185 ~~~~~~~~~~~~~ 197 (524)
T 2xut_A 185 GVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 7776665554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=111.49 Aligned_cols=156 Identities=19% Similarity=0.122 Sum_probs=114.1
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHH
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----PGLGVLLVGRLLY 90 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~ 90 (443)
|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 55667778888788888888889999999999999999999999999888887776665432 2222222222222
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-----cchHHHHhhhhHHHHHHHH-HH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGI-GM 164 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----~~wr~~f~~~~~~~~~~~~-~~ 164 (443)
+.......+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. .++...|++.++++++..+ .+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222345677889999999999999999999999999999887766654321 1455677887887777765 45
Q ss_pred hcCCCCh
Q 013431 165 WSLPPSP 171 (443)
Q Consensus 165 ~~~~es~ 171 (443)
+++|||.
T Consensus 461 ~~~PETk 467 (491)
T 4gc0_A 461 KFVPETK 467 (491)
T ss_dssp HHCCCCT
T ss_pred heecCCC
Confidence 6789985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 443 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-16 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 79.0 bits (193), Expect = 2e-16
Identities = 54/425 (12%), Positives = 120/425 (28%), Gaps = 37/425 (8%)
Query: 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT----TA 75
+ G + AL G ++ S++D + L +L A L
Sbjct: 52 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 111
Query: 76 YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 135
+ V+ V L G G+ + + RG ++S+ +G + +
Sbjct: 112 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 171
Query: 136 GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISA 195
+ W + A A+L+ + +++ + + A
Sbjct: 172 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 231
Query: 196 LGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 255
+L + V L I
Sbjct: 232 EQELTAKQI---------------------------FMQYVLPNKLLWYIAIAN----VF 260
Query: 256 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 315
+ +L ++ L+ A ++ + + T + D + R
Sbjct: 261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 320
Query: 316 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 375
GV + L + Y+ G P V + ++ +G + L E+ P + G
Sbjct: 321 GVFFMTLVTIATIVYWMNPAGNPTVDM-ICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 379
Query: 376 GISLAVLT-NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 434
L G + + + G + F++ + LAV+ ++ + K
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439
Query: 435 EEIES 439
+ ++
Sbjct: 440 QLLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 45.9 bits (107), Expect = 6e-06
Identities = 48/426 (11%), Positives = 111/426 (26%), Gaps = 52/426 (12%)
Query: 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIA----AVLYALGALT 73
L + + +LL L ++D LG ++ L+ V++A +
Sbjct: 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93
Query: 74 TAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY 133
+LVG ++ G+ +G + + R + + +
Sbjct: 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153
Query: 134 FVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAI 193
I ++++ L + AL++ + ++ A +
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA------ 207
Query: 194 SALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253
S LE+F+ P L + V
Sbjct: 208 ----------------------------------FSLKLALELFRQPKLWFLSLYVIGVS 233
Query: 254 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 313
+ + ++ + +M + + G+ LL
Sbjct: 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL 293
Query: 314 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 373
+ G + A + V L + ++ F +R
Sbjct: 294 LAGTIMSVRIIGSSFATS-------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346
Query: 374 GRGISLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 432
+ + ++ + E +G + +L+ +A L V T+ L
Sbjct: 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406
Query: 433 SLEEIE 438
SL +
Sbjct: 407 SLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.44 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-39 Score=302.09 Aligned_cols=381 Identities=15% Similarity=0.109 Sum_probs=271.0
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRLL 89 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l 89 (443)
..|.++ |+|+|.+|.|++.+++.++++++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++
T Consensus 47 ~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (447)
T d1pw4a_ 47 AMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 125 (447)
T ss_dssp HHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred HHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Confidence 346665 6899999999999999999999999999999999999999999999999999998764 78899999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH-hcCC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLP 168 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~ 168 (443)
.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.....+||+.|++.+.+.++..+.. ++.+
T Consensus 126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988877666589999999888887765544 4555
Q ss_pred CChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHH
Q 013431 169 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 248 (443)
Q Consensus 169 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
|+|+... .+..++..++..++ ...+.+.+...++...++.++++.++.....
T Consensus 206 ~~~~~~~--------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (447)
T d1pw4a_ 206 DTPQSCG--------------------------LPPIEEYKNDYPDD--YNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 257 (447)
T ss_dssp CSSTTTC--------------------------CCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred cchhhcc--------------------------cchhhhhhhhcccc--hhhccccccchhhHHHHHHHcCchHHHHHHH
Confidence 5553100 00000000000000 0000111112223345566777766665554
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH
Q 013431 249 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
..+..... .....+.|.++++....+..+.+.......+..+++.++.|++.||.+|++.................
T Consensus 258 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (447)
T d1pw4a_ 258 NVFVYLLR----YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 333 (447)
T ss_dssp HHHHHHHH----HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhh----hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHH
Confidence 44444333 34667778887776555558889999999999999999999999999987655444333333222222
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHH-HHHHHHhhHHHHHhhccchh
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS-NAIVTFAFSPLKELLGAENI 407 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~~~~~~~g~l~~~~g~~~~ 407 (443)
.... .............+..++......+....+..|.+|++.|+++.|+.+...+++ ...+|.+.|.+.|..|+...
T Consensus 334 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~ 412 (447)
T d1pw4a_ 334 VYWM-NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 412 (447)
T ss_dssp HTTS-CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred HHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 2111 111222223333333333333444455578899999999999999999888774 56688999999999999888
Q ss_pred hhHHHHHHHHHHHHhhhcccc
Q 013431 408 FLLFAAIAFLAVLFIVRTVPE 428 (443)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~ 428 (443)
+...+++.+++.++.....++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 413 FMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888887777776655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7.3e-31 Score=243.13 Aligned_cols=366 Identities=13% Similarity=0.039 Sum_probs=245.9
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHH----HHHHHHHHhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV----LLVGRLLYGLG 93 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~----l~~~r~l~G~~ 93 (443)
+++++|+|++|+|++.+++.++..++++++|+++||+||||+++++..+..++..+..+.++... .++.+.+.+.+
T Consensus 34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T d1pv7a_ 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc
Confidence 67889999999999999999999999999999999999999999999999999988888766554 34556666666
Q ss_pred hhhhchhhhhHhhhcCcc--cchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHH-HHHHHhcCCCC
Q 013431 94 IGLAMHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL-MGIGMWSLPPS 170 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~es 170 (443)
.+...........+..++ +++.+..+........+..+++.+++.+.+. +|+..+........+ ..+..+..+|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T d1pv7a_ 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred ccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cccccccchhhHHHHHHHHHHHHhccc
Confidence 665555555555444443 3456677888888899999999999887665 455555555544444 44555666665
Q ss_pred hHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHH
Q 013431 171 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 250 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (443)
++... ++ ++ ++..+++.......+..+++..+.......
T Consensus 192 ~~~~~----------~~-----------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (417)
T d1pv7a_ 192 PSSAT----------VA-----------------------NA--------VGANHSAFSLKLALELFRQPKLWFLSLYVI 230 (417)
T ss_dssp CSSSC----------SS-----------------------HH--------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHH
T ss_pred ccchh----------hh-----------------------hh--------hhhhcccccccccccccccccccchhhhhH
Confidence 53100 00 00 000011112222334444444444443333
Q ss_pred HHHHHHHhCchhhHhhHHHHHHhcCCC---CchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHH
Q 013431 251 LVLFQQITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 327 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (443)
........ .....+.+....... +....+.......++..++..+.+++.||.++|+.+..+..+.+++.+.+
T Consensus 231 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 306 (417)
T d1pv7a_ 231 GVSCTYDV----FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHH----HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----hhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcc
Confidence 33332221 222222222222211 12455666777788889999999999999999999888877777766665
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHH-HHHHHHHHHHHHhhHHHHHhhccch
Q 013431 328 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKELLGAEN 406 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~ 406 (443)
.. .++.+.......+...+. ....+...++..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|++.
T Consensus 307 ~~-----~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~ 380 (417)
T d1pv7a_ 307 SF-----ATSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp HT-----CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cc-----ccccchhhHHHHHHHHHH-HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 54 133333333333333333 3344555588999999999999999865 4577899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhccccCCCCCHHH
Q 013431 407 IFLLFAAIAFLAVLFIVRTVPETKGLSLEE 436 (443)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
.+++.+++.++..++..+..+++++.+.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 381 AYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999888888887777777776665544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.5e-13 Score=125.36 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=131.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhch
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 99 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 99 (443)
++.+.+..+.+...+...++..++..+.+++.||+|||+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 34456677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcCcccchhhHHHHH-HHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhc
Q 013431 100 GAPLYIAETCPSQIRGTLISLK-ELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 166 (443)
Q Consensus 100 ~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 166 (443)
...+++.|.+|+++|+++.++. +....+|..++|.+.+++.+.. ||+..|++.+++.++..++..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 5567899999999999998887 9999999988888776554433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=8.8e-14 Score=128.80 Aligned_cols=162 Identities=18% Similarity=0.079 Sum_probs=119.1
Q ss_pred hHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHH
Q 013431 263 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 342 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (443)
+....|. +++.|.+. .+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++........ ......+
T Consensus 44 ~~~~~p~-~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 120 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-SSIAVMF 120 (447)
T ss_dssp HHHHHHH-TTSSTTCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-SSSSHHH
T ss_pred HHHHHHH-HHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh-hhHHHHH
Confidence 4444454 46677776 8899999999999999999999999999999999998888877777665432211 1222333
Q ss_pred HHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhh-ccchhhhHHHHHHHHHHHH
Q 013431 343 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIFLLFAAIAFLAVLF 421 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~ 421 (443)
....+ .+.......+....++.|.+|+++|++++++.+....+|..++|.+.+...+.. +|+..+++.+.+.++..++
T Consensus 121 ~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 121 VLLFL-CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199 (447)
T ss_dssp HHHHH-HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHH
Confidence 33333 333333333445588999999999999999999999999999999888877765 5788888877777776666
Q ss_pred hhhcccc
Q 013431 422 IVRTVPE 428 (443)
Q Consensus 422 ~~~~~~~ 428 (443)
.+...++
T Consensus 200 ~~~~~~~ 206 (447)
T d1pw4a_ 200 AFAMMRD 206 (447)
T ss_dssp HHHHCCC
T ss_pred HHHhccc
Confidence 5555543
|