Citrus Sinensis ID: 013440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
Protein Sequence
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQSWATPTS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccEEEEEcccccccccccccccccEEEEcccccccccccccccccccEEEccccccccccccHHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccccEEEccccccccEEEcccccccHHHHHccccccEEEEEEcccccccccHHHHHccccHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEcccccEEcccccccccccccccccccccccccccHHHHHcccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccEEEEccccccccccHHHHccEEEEEEccccHHHccccccccccEEEEEEccccccccccHHHHHHccccEEEEccccccccccccHHHHHcccEEEcccccccccHHHHHHHccEEEEcccccHHHccHHHHHHHcccEEEccccccccEccccHHHHHHcccEEEEcccccccccccccccHHHHHHHHHHcccEEEEEEccHHHcHHHcccccHHHEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccEEEEcccHHHHHHccccccccccHcHHHcEEEEcccHHHHHHHcccccccccccccEEEEEcccHHHHccccHHHHHccHcccEEEEcccHHHHHHHccccccccccccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
MHDVIHVVAVSIAteermfnvpnvaDLEKKMEETIqkdpiaislphrdiqelperlqcpnlqlfllytegngpmqvsdhffegmeglkvlqfpgigssslpssLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNinqlpveigqLTRLQlldlsncwwleviapnVISKLSQLEELymgngfsgwekveggsnasLVELERLtelttleievpdaeilppdfvsVELQRYKirigdgpedefdpllVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVhelddgegfprlkRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRedqsfsnlriinvDSCRKLKYLFSFSMAKNLLRLqkvkvedcddlkmiigpdmekppttqgfieinaeddpvhqswatpts
Flexible Loop (DISEMBL)
MHDVIHVVAvsiateermfnvpNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTtleievpdaeilppdfvSVELQRYKIRigdgpedefdpLLVKSEASRLMMLKGIKKvsilqendgTKMLLQRTEDLWLETLEGVQSVVHelddgegfprLKRLLVTDCSEILhivgsvrrvrCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSmaknllrlqkVKVEDCDDLKMiigpdmekppTTQGFIEINAEDDPVHQSWATPTS
Low Complexity Region (SEG)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFpgigssslpsslgrliNLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASlvelerltelttleieVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQSWATPTS
Disordered region (IsUnstruct)
***VIHVVAVSIATEERMFNVPNVADL***********PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG*******************************
Disordered Region (DISOPRED)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLK****************IEINAEDDPVHQSWA****
Disordered Region (DISEMBL)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP**********
Disordered Region (DISPRO)
*HDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQ*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQSWATPTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	443	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.889	0.4	0.256	3e-17
O81825	919	Probable disease resistan	no	no	0.871	0.420	0.266	1e-15
Q42484	909	Disease resistance protei	no	no	0.799	0.389	0.239	3e-15
Q6DHL5	238	Leucine-rich repeat-conta	yes	no	0.282	0.525	0.333	3e-06
Q7XA39	988	Putative disease resistan	N/A	no	0.205	0.092	0.365	4e-06
O35930	734	Platelet glycoprotein Ib	yes	no	0.194	0.117	0.402	1e-05
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.306	0.134	0.3	1e-05
Q80TH2	1402	Protein LAP2 OS=Mus muscu	no	no	0.320	0.101	0.345	1e-05
Q6ZVD8	1323	PH domain leucine-rich re	no	no	0.259	0.086	0.330	2e-05
Q96RT1	1412	Protein LAP2 OS=Homo sapi	no	no	0.306	0.096	0.342	2e-05

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 201/429 (46%), Gaps = 35/429 (8%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIA-----ISLPHRDIQELPER 55
           MHDV+   A+ I +  +  +  +   +     + I++D +A     +SL +  ++ LP+ 
Sbjct: 462 MHDVVRDFAIWIMSSSQ--DDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDL 519

Query: 56  LQCPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTL 113
           ++   ++  +L  +GN  + +V   F +    L++L   G    S PS SL RL +L +L
Sbjct: 520 VEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSL 579

Query: 114 CLDWC-ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172
            L  C +L  + ++  L KLE+L L  ++I + P  + +L R + LDLS    LE I   
Sbjct: 580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639

Query: 173 VISKLSQLEELYMGNGFSGWEKVEGGS---NASLVELERLTELTTLEIEVPDAEIL--PP 227
           V+S+LS LE L M +    W  V+G +    A++ E+  L  L  L I +  +  L    
Sbjct: 640 VVSRLSSLETLDMTSSHYRWS-VQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKR 698

Query: 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287
           +     L+++++ +G         L  + +  RL     I  +++ Q + G   LL  T 
Sbjct: 699 NTWIKRLKKFQLVVGSRY-----ILRTRHDKRRLT----ISHLNVSQVSIG--WLLAYTT 747

Query: 288 DLWLETLEGVQSVVHEL-DDGEGFPRLKRLLVTDC-----SEILHIVGSVRRVRCEVFPL 341
            L L   +G+++++ +L  D +GF  LK L + +      S +  +  +  +   ++  L
Sbjct: 748 SLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQSSDILDL 807

Query: 342 LEALSLMFL--TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV 399
           L  L  + L   +LET    Q         L+II +  CRKL+ L        +  L+++
Sbjct: 808 LPNLEELHLRRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEI 867

Query: 400 KVEDCDDLK 408
           ++  CD L+
Sbjct: 868 EISYCDSLQ 876

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 188/420 (44%), Gaps = 34/420 (8%)

Query: 1   MHDVIHVVAV-SIATEERMFNVPNVADL------EKKMEETIQKDPIAISLPHRDIQELP 53
           MHDV+   A+  ++++   F+   +A        + K   ++Q+    +SL    ++ LP
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQR----VSLMANKLERLP 486

Query: 54  ERLQCPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112
             +    ++  +L  +GN  + +V + F +    L++L   G+   +LP S   L +L++
Sbjct: 487 NNV-IEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRS 545

Query: 113 LCLDWCE-LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP 171
           L L  C+ L ++ ++  L KL+ L L  S I +LP  +  L+ L+ + +SN + L+ I  
Sbjct: 546 LVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPA 605

Query: 172 NVISKLSQLEELYMGNGFSGW----EKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227
             I +LS LE L M      W    E+ EG   A+L E+  L  L  L I++ D      
Sbjct: 606 GTILQLSSLEVLDMAGSAYSWGIKGEEREG--QATLDEVTCLPHLQFLAIKLLDVLSFSY 663

Query: 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287
           +F S+  +  K +        F P+   S          I  V++   N     LLQ   
Sbjct: 664 EFDSLTKRLTKFQF------LFSPIRSVSPPGTGEGCLAISDVNV--SNASIGWLLQHVT 715

Query: 288 DLWLETLEGVQSVVHEL--DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345
            L L   EG+  +   L       F  +K L +     +    G   ++  ++FP LE L
Sbjct: 716 SLDLNYCEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCESQL--DLFPNLEEL 773

Query: 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS-MAKNLLRLQKVKVEDC 404
           SL  + NLE+I             L+++ V  CR+LK LFS   +A  L  LQ++KV  C
Sbjct: 774 SLDNV-NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSC 832

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 181/447 (40%), Gaps = 93/447 (20%)

Query: 1   MHDVIHVVAVSIATEERMFNV-----PNVADLEKKMEETIQKDPIAISLPHRDIQELPER 55
           MH+V+   A+ +A+E+  +       P++   E    E   +  + ISL    IQ LPE+
Sbjct: 471 MHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAEN-WRQALVISLLDNRIQTLPEK 529

Query: 56  LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115
           L CP L   +L  + +   ++   FF  M  L+VL       + +P S+  L+ L  L  
Sbjct: 530 LICPKLTTLML-QQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHL-- 586

Query: 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175
                               S++ + I+ LP E+G L +L+ LDL    +L+ I  + I 
Sbjct: 587 --------------------SMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAIC 626

Query: 176 KLSQLEELYMGNGFSGWEKVEGGSNAS----LVELERLTELTTLEIEVPDAEILPPDFVS 231
            LS+LE L +   ++GWE    G + +      +LE L  LTTL I V   E L   F  
Sbjct: 627 WLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEF 686

Query: 232 VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLL-QRTEDLW 290
             L ++   I     +E + LL  +  S     + ++++SI   +D   ++     E+ W
Sbjct: 687 GALHKH---IQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDW 743

Query: 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350
           L +LE                                                 L+L  L
Sbjct: 744 LPSLE------------------------------------------------VLTLHSL 755

Query: 351 TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI 410
            NL  +  + + +D    N+R IN+  C KLK   + S  + L +L+ +++ DC +++ +
Sbjct: 756 HNLTRVWGNSVSQD-CLRNIRCINISHCNKLK---NVSWVQKLPKLEVIELFDCREIEEL 811

Query: 411 I----GPDMEKPPTTQGFIEINAEDDP 433
           I     P +E P        +   D P
Sbjct: 812 ISEHESPSVEDPTLFPSLKTLRTRDLP 838

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 7/132 (5%)

Query: 33  ETIQKDPIAISLPHRDIQELPERLQ--CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL 90
           ET QK  +   L  + + E PE LQ    NL+   L    N  ++    F    + LK  
Sbjct: 11  ETSQKTGV-FQLTGKGLTEFPEDLQKLTANLRTVDL---SNNKIEELPAFIGSFQHLKSF 66

Query: 91  QFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEI 149
                  +SLP+ +G+L  L+TL L+  +L  + ++IGQLK L  LSL+ +   + P  +
Sbjct: 67  TISCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFKEFPSGL 126

Query: 150 GQLTRLQLLDLS 161
           G L +L +LDLS
Sbjct: 127 GTLRQLDVLDLS 138

Danio rerio (taxid: 7955)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 92  FPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIG 150
           F  + SS  PS L + ++L+ L L + +L  + ++IG L  L  L L+ +N   LP  + 
Sbjct: 511 FAAVVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLC 570

Query: 151 QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
           +L  LQ LD+ NC+ L  + P   SKLS L  L
Sbjct: 571 KLQNLQTLDVHNCYSLNCL-PKQTSKLSSLRHL 602

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O35930|GP1BA_MOUSE Platelet glycoprotein Ib alpha chain OS=Mus musculus GN=Gp1ba PE=2 SV=2

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
           +SL    +L  L LD CEL  +   G+L KLE L L+++N+  LP     L  L  LD+S
Sbjct: 65  ASLVHFTHLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLPSLGWALPALTTLDVS 124

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNG 188
               L  ++P V+  LSQL+ELY+ N 
Sbjct: 125 FN-KLGSLSPGVLDGLSQLQELYLQNN 150

GP-Ib, a surface membrane protein of platelets, participates in the formation of platelet plugs by binding to the A1 domain of vWF, which is already bound to the subendothelium.

Mus musculus (taxid: 10090)

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 34/170 (20%)

Query: 51  ELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIG------------- 96
            +P     PNL+L  L+T   G     D  F   +     L+  GIG             
Sbjct: 298 SIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIA 357

Query: 97  ----------------SSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138
                           S S+P  +G LINLQ L LD   L+     ++G+L  L  LSL 
Sbjct: 358 NLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLF 417

Query: 139 YSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            + ++  +P  IG +T L+ LDLSN  + E I P  +   S L EL++G+
Sbjct: 418 SNRLSGGIPAFIGNMTMLETLDLSNNGF-EGIVPTSLGNCSHLLELWIGD 466

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 20/162 (12%)

Query: 42  ISLPHRDIQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS--- 97
           +SLP  D+  LP  +   NL  L  L    NG  +    F E ++  KVL          
Sbjct: 74  LSLPDNDLTTLPASIA--NLINLRELDVSKNGIQE----FPENIKNCKVLTIVEASVNPI 127

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
           S LP    +L+NL  L L+   L  + A  G+L KL+IL L  + +  LP  + +LT+L+
Sbjct: 128 SKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLE 187

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GN------GFSG 191
            LDL +  + EV  P V+ +LS L E +M GN      GF G
Sbjct: 188 RLDLGSNEFTEV--PEVLEQLSGLREFWMDGNRLTFIPGFIG 227

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated ERBB2 'Tyr-1248' receptor, it may contribute to stabilize this unphosphorylated state.

Mus musculus (taxid: 10090)

>sp|Q6ZVD8|PHLP2_HUMAN PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Homo sapiens GN=PHLPP2 PE=1 SV=3

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 96  GSSSLPSSLGRLINLQTLCLDWCELADIA-AIGQLKKLEILSLAYSNINQLPVEIGQLTR 154
           G   LPS +G L+NLQTLCLD   L  +   +G L++L  L ++++N +Q+P    +LT 
Sbjct: 333 GFHDLPSQIGNLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPEVYEKLTM 392

Query: 155 L-QLLDLSNCWWLEVIAPNVISKLSQLEELYMG-NGFSGW--EKVEGGSNASLVELE--R 208
           L +++   NC  LEV+   V+++++ ++ + +  N       E +EG  + + V+L   R
Sbjct: 393 LDRVVMAGNC--LEVLNLGVLNRMNHIKHVDLRMNHLKTMVIENLEGNKHITHVDLRDNR 450

Query: 209 LTEL 212
           LT+L
Sbjct: 451 LTDL 454

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 42  ISLPHRDIQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS--- 97
           +SLP  D+  LP  +   NL  L  L    NG  +    F E ++  KVL          
Sbjct: 74  LSLPDNDLTTLPASIA--NLINLRELDVSKNGIQE----FPENIKNCKVLTIVEASVNPI 127

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
           S LP    +L+NL  L L+   L  + A  G+L KL+IL L  + +  LP  + +LT+L+
Sbjct: 128 SKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLE 187

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM 185
            LDL +  + EV  P V+ +LS L+E +M
Sbjct: 188 RLDLGSNEFTEV--PEVLEQLSGLKEFWM 214

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated 'Tyr-1248' of receptor ERBB2, it may contribute to stabilize this unphosphorylated state.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.907	0.305	0.456	1e-82
255563252	1603	Disease resistance protein RPS5, putativ	0.907	0.250	0.472	5e-82
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.887	0.159	0.463	6e-78
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.898	0.419	0.460	5e-77
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.907	0.3	0.453	3e-74
255574526	1232	Disease resistance protein RFL1, putativ	0.900	0.323	0.477	7e-74
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.893	0.167	0.437	3e-72
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.907	0.300	0.444	8e-71
359488027	1520	PREDICTED: disease resistance protein At	0.911	0.265	0.431	2e-70
296087872	1152	unnamed protein product [Vitis vinifera]	0.911	0.350	0.431	2e-70

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 271/423 (64%), Gaps = 21/423 (4%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKM-EETIQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+H  A+S+A   R  +V  VAD  K+     + +   AISLP R I +LP  L+CP
Sbjct: 460 MHDVVHSFAISVAL--RDHHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECP 517

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           NL  FLL  + +  +Q+ D FF  M+ LK+L    +  S LPSSL  L NLQTLCLD C 
Sbjct: 518 NLNSFLLLNK-DPSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCV 576

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DI+ IG+L KL++LSL  SNI +LP EIG++TRLQLLDLSNC  LEVI+PN +S L++
Sbjct: 577 LEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTR 636

Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPDFVSV--E 233
           LE+LYMGN F  WE  EG S    NA L EL+ L+ L+TL +++ DA+ +P D  S    
Sbjct: 637 LEDLYMGNSFVKWE-TEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQN 695

Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
           L+R++I IGDG +       VK   SR + L   K  +++Q  +G   LL+ TE+L L+ 
Sbjct: 696 LERFRIFIGDGWD-----WSVKDATSRTLKL---KLNTVIQLEEGVNTLLKITEELHLQE 747

Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
           L GV+S++++L DGEGFP+L+ L V +C  + +I+ S+R      F  L++L L  L NL
Sbjct: 748 LNGVKSILNDL-DGEGFPQLRHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNL 806

Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
           E IC+ QL   +S  NLRI+ V+SC +LK LFS SMA+ L+RL+++ + DC  ++ ++  
Sbjct: 807 EKICHGQLMA-ESLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865

Query: 414 DME 416
           + E
Sbjct: 866 ESE 868

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 196/415 (47%), Positives = 267/415 (64%), Gaps = 13/415 (3%)

Query: 1   MHDVIHVVAVSIATE-ERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
           +HDV+  VA+SIA+  + +F V N A L++   + + K    ISLP+ DI  LPE L+CP
Sbjct: 466 IHDVVRDVAISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECP 525

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
            L+LFLL+T+ +  ++V D  FE  + L+VL F G+  SSLP SLG L NL TLCLDWC 
Sbjct: 526 ELELFLLFTQ-DISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCA 584

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L D+A IG+L  L ILS  +S+I +LP EI QLT+L+ LDLS+C  L+VI   +IS+L+Q
Sbjct: 585 LRDVAIIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQ 644

Query: 180 LEELYMGNGFSGW--EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRY 237
           LEELYM N F  W  + +    NASL ELE L  LTTLEI V DA+ILP D    +L+R+
Sbjct: 645 LEELYMNNSFDLWDVQGINNQRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERF 704

Query: 238 KIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV 297
           +I IGD      D        SR + LK +   SI  E+ G  +LL+ TEDL+L  ++G+
Sbjct: 705 RIFIGDVWSGTGD-----YGTSRTLKLK-LNTSSIHLEH-GLSILLEVTEDLYLAEVKGI 757

Query: 298 QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETIC 357
           +SV+++L D +GF +LK L V +  EI +I+   RR  C  FP+LE+L L  L +LE IC
Sbjct: 758 KSVLYDL-DSQGFTQLKHLDVQNDPEIQYIIDPNRRSPCNAFPILESLYLDNLMSLEKIC 816

Query: 358 YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412
             +L    SFS LR + V  C +LK LFSFSM + LL+LQ++KV DC +L+ I+ 
Sbjct: 817 CGKLTTG-SFSKLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLEEIVA 870

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 190/410 (46%), Positives = 257/410 (62%), Gaps = 17/410 (4%)

Query: 1   MHDVIHVVAVSIAT-EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+H  A  +A+ +  +F V   + LE+  E+ I +   AISLP   I +LPE  +CP
Sbjct: 415 MHDVVHNFATLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECP 474

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           +LQ FLLY + +  +++ D+FF  M+ LK++    +  S +P SL  L NLQTLCLD C 
Sbjct: 475 DLQSFLLYNK-DSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCT 533

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DIAAIG+LKKL++LS   S + QLP E+G+LTRLQLLDLS C  LEVI   V+S L++
Sbjct: 534 LEDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTK 593

Query: 180 LEELYMGNGFSGWEKVEGG---SNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQR 236
           LEELYMGN F  WE  E     +NASL EL+ L  L TLE+ + +AEILP D  S +L  
Sbjct: 594 LEELYMGNSFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDL 653

Query: 237 YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296
           YK+ IG     E      K EASR + LK    + I    +  K+LL  TEDL+L+ LEG
Sbjct: 654 YKVFIG-----EEWSWFGKYEASRTLKLKLNSSIEI----EKVKVLLMTTEDLYLDELEG 704

Query: 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV-FPLLEALSLMFLTNLET 355
           V++V++EL DG+GFP+LK L + + SEI +IV  +      + FP LE+L +  L NL  
Sbjct: 705 VRNVLYEL-DGQGFPQLKHLHIQNSSEIQYIVDCLSMGNHYIAFPRLESLLVDNLNNLGQ 763

Query: 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405
           ICY QL    SFS LR + V+ C  LK LF FSM + L++L+++ V  C+
Sbjct: 764 ICYGQLMSG-SFSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCN 812

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 192/417 (46%), Positives = 260/417 (62%), Gaps = 19/417 (4%)

Query: 1   MHDVIHVVAVSIAT-EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+H  A  +A+ +  +F +   +D   K    + +   AISLP   I  LPE L  P
Sbjct: 464 MHDVVHGFAAFVASRDHHVFTL--ASDTVLKEWPDMPEQCSAISLPRCKIPGLPEVLNFP 521

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
             + F+LY E +  +++ D  F+G + L+++    +   +LPSSL  L  LQTLCLD C 
Sbjct: 522 KAESFILYNE-DPSLKIPDSLFKGTKTLQLVDMTAVQLPTLPSSLQFLEKLQTLCLDSCG 580

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DIA IG+LK L++LSL  SNI +LP EIGQLTRLQLLDLSN   LE+I PNV+S L+Q
Sbjct: 581 LKDIAMIGELKMLKVLSLIDSNIVRLPREIGQLTRLQLLDLSNNPRLEMIPPNVLSCLTQ 640

Query: 180 LEELYMGNGFSGWEKVEG----GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQ 235
           LE+LYM N F  W ++EG     +NASL EL+ L  L+TL + + D  ILP DF S +L+
Sbjct: 641 LEDLYMENSFLQW-RIEGLDSQRNNASLAELKYLPNLSTLHLHITDPMILPRDFFSKKLE 699

Query: 236 RYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295
           R+KI IG+G +        K E S  M LK    +   Q  +G ++LL+RTEDL L+ L+
Sbjct: 700 RFKILIGEGWD-----WSRKRETSTTMKLKISASI---QSEEGIQLLLKRTEDLHLDGLK 751

Query: 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355
           GV+SV +EL DG+GFPRLK L + +  EI +IV S        FPLLE+LSL  L  LE 
Sbjct: 752 GVKSVSYEL-DGQGFPRLKHLHIQNSLEIRYIVDSTMLSPSIAFPLLESLSLDNLNKLEK 810

Query: 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412
           IC SQ    +SFSNLRI+ V+SC  LK LFS  M + LL+L+ + + DC  +++I+ 
Sbjct: 811 ICNSQPVA-ESFSNLRILKVESCPMLKNLFSLHMERGLLQLEHISIIDCKIMEVIVA 866

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 192/423 (45%), Positives = 272/423 (64%), Gaps = 21/423 (4%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKMEET-IQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+   A S+A+  R  +V  VAD  K+   + + +   AISLP+R I +LP  L+CP
Sbjct: 460 MHDVVQSFAFSVAS--RDHHVLIVADEFKEWPTSDVLQQYTAISLPYRKIPDLPAILECP 517

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           NL  F+L  + +  +Q+ D+FF  M+ LKVL    +  S LPSSL  L NLQTLCLD C 
Sbjct: 518 NLNSFILLNK-DPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCV 576

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DI+ +G+LKKL++LSL  S+I  LP EIG+LTRL LLDLSNC  LEVI+PNV+S L++
Sbjct: 577 LEDISIVGELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTR 636

Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPD--FVSVE 233
           LEELYMGN F  WE  EG S    NA L EL+RL+ L TL +++ DA+ +  D  F+  +
Sbjct: 637 LEELYMGNSFVKWE-TEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQK 695

Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
           L+R++I IGDG +       VK   SR + L   K  +++Q  +    LL+ TE+L L+ 
Sbjct: 696 LERFRIFIGDGWD-----WSVKYATSRTLKL---KLNTVIQLEEWVNTLLKSTEELHLQE 747

Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
           L+GV+S++++L DGE FPRLK L V +C  + +I+ S+R      F  L++L L  L NL
Sbjct: 748 LKGVKSILNDL-DGEDFPRLKHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNL 806

Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
           E IC+ QL   +S   LRI+ V+SC +LK LFS SMA+ L+RL+++ + DC  ++ ++  
Sbjct: 807 EKICHGQLMA-ESLGKLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865

Query: 414 DME 416
           + E
Sbjct: 866 ESE 868

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 198/415 (47%), Positives = 264/415 (63%), Gaps = 16/415 (3%)

Query: 1   MHDVIHVVAVSIAT-EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
           +HD+I   AVSIA  E+++F + N   LE   +E   K    ISLP  ++ +LPE L+ P
Sbjct: 454 IHDLIQDFAVSIAYREQQVFTINNYIRLEVWPDEDALKSCTRISLPCLNVVKLPEVLESP 513

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           NL+  LL TE    +++   FF+G+  LKVL F G+  SSLP SLG L +L+TLCLD C 
Sbjct: 514 NLEFLLLSTE-EPSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLEHLRTLCLDHCL 572

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DIA IG+LKKLEIL+ A+S+I +LP EIG+L+RL+LLDLS+C  L V   NV+S+L  
Sbjct: 573 LHDIAIIGELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNVFPANVLSRLCL 632

Query: 180 LEELYMGNGFSGWEKVEG---GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQR 236
           LEELYM N F  W K+EG    SNASL EL  L+ LT+LEI++ DA ILP D  + +LQR
Sbjct: 633 LEELYMANSFVRW-KIEGLMNQSNASLDELVLLSHLTSLEIQILDARILPRDLFTKKLQR 691

Query: 237 YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296
           YKI IG    DE+D      E SR++ LK     SI  E +     L+ T+DL L    G
Sbjct: 692 YKILIG----DEWD-WNGHDETSRVLKLK--LNTSIHSEYE-VNQFLEGTDDLSLADARG 743

Query: 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETI 356
           V S+++ L + EGFP+LKRL+V +C EI  +V +   V    FPLL++L L  L NLE  
Sbjct: 744 VNSILYNL-NSEGFPQLKRLIVQNCPEIHCLVNASESVPTVAFPLLKSLLLENLMNLEKF 802

Query: 357 CYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII 411
           C+ +L    SFS LR I V SC +LK L SFSM + L++LQ+++V DC ++  I 
Sbjct: 803 CHGELV-GGSFSELRSIKVRSCNELKNLLSFSMVRFLMQLQEMEVIDCRNVMEIF 856

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 179/409 (43%), Positives = 254/409 (62%), Gaps = 13/409 (3%)

Query: 4   VIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQL 63
            +H  AVSIA         +     K+++   Q+    I L H +I ELP  L+CP L L
Sbjct: 461 AVHDAAVSIADRYHHVLTTDNEIQVKQLDNDAQRQLRQIWL-HGNISELPADLECPQLDL 519

Query: 64  FLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI 123
           F ++ + N  ++++D+FF  M  L+VL    +  SSLPSS+  L NLQTLCLD   L DI
Sbjct: 520 FQIFND-NHYLKIADNFFSRMHKLRVLGLSNLSLSSLPSSVSLLENLQTLCLDRSTLDDI 578

Query: 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
           +AIG LK+LEILS   SNI QLP EI QLT+L+LLDLS+C+ LEVI P+V SKLS LEEL
Sbjct: 579 SAIGDLKRLEILSFFQSNIKQLPREIAQLTKLRLLDLSDCFELEVIPPDVFSKLSMLEEL 638

Query: 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGD 243
           YM N F  W+  EG +NASL ELE L+ LT  EI + D+++LP   +   L++Y++ IGD
Sbjct: 639 YMRNSFHQWD-AEGKNNASLAELENLSHLTNAEIHIQDSQVLPYGIIFERLKKYRVCIGD 697

Query: 244 GPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHE 303
             + +    ++++   +L          I   N G +MLL RTEDL+L  +EGV +++ E
Sbjct: 698 DWDWDGAYEMLRTAKLKL-------NTKIDHRNYGIRMLLNRTEDLYLFEIEGV-NIIQE 749

Query: 304 LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE 363
           L D EGFP LK L + +  EI +I+ ++  V    FP+LE+L L  L++L+ IC+  LR 
Sbjct: 750 L-DREGFPHLKHLQLRNSFEIQYIISTMEMVSSNAFPILESLILYDLSSLKKICHGALRV 808

Query: 364 DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412
            +SF+ LRII V+ C KL  LFSF +A+ L +LQK+K+  C  ++ ++ 
Sbjct: 809 -ESFAKLRIIAVEHCNKLTNLFSFFVARGLSQLQKIKIAFCMKMEEVVA 856

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 188/423 (44%), Positives = 270/423 (63%), Gaps = 21/423 (4%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKM-EETIQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+   A+S+A   R  +V  VAD  K+     + +   AISLP R I +LP  L+CP
Sbjct: 460 MHDVVRSFAISVAL--RDHHVLIVADEFKEWPTNDVLQQYTAISLPFRKIPDLPAILECP 517

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           NL  FLL +  +  +Q+ ++FF  M+ LKVL   G+  S LPSSL  L NLQTLCLD+C 
Sbjct: 518 NLNSFLLLS-TDPSLQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCV 576

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DI+ +G+LKKL++LSL  S+I  LP EIG+LTRL LLDLSNC  LEVI+PNV+S L++
Sbjct: 577 LEDISIVGELKKLKVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTR 636

Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPDFVSV--E 233
           LEELYMGN F  WE  EG S    +A L EL+ L  L TL++++ DA+ +P D      +
Sbjct: 637 LEELYMGNSFLKWE-AEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQK 695

Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
           L+R++I IGDG +       VK   SR + L   K  +++Q  +    LL+ TE+L L+ 
Sbjct: 696 LERFRIFIGDGWD-----WSVKYATSRTLKL---KLNTVIQLEERVNTLLKITEELHLQE 747

Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
           L GV+S++++LD+ EGF +LK L V +C  + +I+ S+R      F  L++L L  L NL
Sbjct: 748 LNGVKSILNDLDE-EGFCQLKDLHVQNCPGVQYIINSMRMGPRTAFLNLDSLFLENLDNL 806

Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
           E IC+ QL   +S  NLRI+ V+SC +LK LFS S+A+ ++RL+++ + DC  ++ ++  
Sbjct: 807 EKICHGQLMA-ESLGNLRILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVVAE 865

Query: 414 DME 416
           + E
Sbjct: 866 ESE 868

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 181/419 (43%), Positives = 254/419 (60%), Gaps = 15/419 (3%)

Query: 1   MHDVIHVVAVSIATE-ERMFNVPNVADLE-KKMEETIQKDPIAISLPHRDIQELPERLQC 58
           MHDV+  VA++I ++  R+F++     +E  KM+E   +    +SL + DI ELP  L C
Sbjct: 467 MHDVVRDVAIAIVSKVHRVFSLREDELVEWPKMDEL--QTCTKMSLAYNDICELPIELVC 524

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
           P L+LFL Y   +  +++ + FFE M+ LKVL    +  +SLPSSL  L NL+TL L+WC
Sbjct: 525 PELELFLFYHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWC 584

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
           +L DI+ I +LKKLE  S   SNI +LP EI QLT L+L DL +C  L  I PNVIS LS
Sbjct: 585 KLGDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLS 644

Query: 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYK 238
           +LE L M N F+ WE VEG SNAS+ E + L  LTTL+I++PDAE+L  D +  +L RY+
Sbjct: 645 KLENLCMENSFTLWE-VEGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYR 703

Query: 239 IRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQ 298
           I IGD    + +    K+       LK  K  + L+  DG  +LL+  +DL L  L G  
Sbjct: 704 IFIGDVWSWDKNCPTTKT-------LKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAA 756

Query: 299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETIC 357
           +V  +LD  EGF +LK L V    E+ HI+ S+  +     FP+LE+L L  L NL+ +C
Sbjct: 757 NVFPKLDR-EGFLQLKCLHVERSPEMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVC 815

Query: 358 YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDME 416
           + QL    SFS LRI+ V+ C  LK+LFS SMA+ L RL+K+++  C ++  ++    E
Sbjct: 816 HGQLLVG-SFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKE 873

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 181/419 (43%), Positives = 254/419 (60%), Gaps = 15/419 (3%)

Query: 1   MHDVIHVVAVSIATE-ERMFNVPNVADLE-KKMEETIQKDPIAISLPHRDIQELPERLQC 58
           MHDV+  VA++I ++  R+F++     +E  KM+E   +    +SL + DI ELP  L C
Sbjct: 287 MHDVVRDVAIAIVSKVHRVFSLREDELVEWPKMDEL--QTCTKMSLAYNDICELPIELVC 344

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
           P L+LFL Y   +  +++ + FFE M+ LKVL    +  +SLPSSL  L NL+TL L+WC
Sbjct: 345 PELELFLFYHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWC 404

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
           +L DI+ I +LKKLE  S   SNI +LP EI QLT L+L DL +C  L  I PNVIS LS
Sbjct: 405 KLGDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLS 464

Query: 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYK 238
           +LE L M N F+ WE VEG SNAS+ E + L  LTTL+I++PDAE+L  D +  +L RY+
Sbjct: 465 KLENLCMENSFTLWE-VEGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYR 523

Query: 239 IRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQ 298
           I IGD    + +    K+       LK  K  + L+  DG  +LL+  +DL L  L G  
Sbjct: 524 IFIGDVWSWDKNCPTTKT-------LKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAA 576

Query: 299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETIC 357
           +V  +LD  EGF +LK L V    E+ HI+ S+  +     FP+LE+L L  L NL+ +C
Sbjct: 577 NVFPKLDR-EGFLQLKCLHVERSPEMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVC 635

Query: 358 YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDME 416
           + QL    SFS LRI+ V+ C  LK+LFS SMA+ L RL+K+++  C ++  ++    E
Sbjct: 636 HGQLLVG-SFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKE 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.437	0.196	0.263	1.1e-12
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.884	0.426	0.241	9.8e-12
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.189	0.092	0.352	3.3e-10
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.169	0.070	0.341	7.9e-05
MGI|MGI:1333744	734	Gp1ba "glycoprotein 1b, alpha	0.171	0.103	0.432	0.00028
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.327	0.104	0.313	0.0007
UNIPROTKB|Q724E1	499	inlE "Internalin E" [Listeria	0.221	0.196	0.310	0.00076

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 54/205 (26%), Positives = 95/205 (46%)

Query:     1 MHDVIHVVAV---SIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQ 57
             MHDV+   A+   S + ++    V +   L+   ++ +      +SL +  ++ LP+ ++
Sbjct:   462 MHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVE 521

Query:    58 --CPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFXXXXXXXXXX-XXXXXXNLQTL 113
               C    + LL  +GN  + +V   F +    L++L                   +L +L
Sbjct:   522 EFCVKTSVLLL--QGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSL 579

Query:   114 CLDWC-ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172
              L  C +L  + ++  L KLE+L L  ++I + P  + +L R + LDLS    LE I   
Sbjct:   580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639

Query:   173 VISKLSQLEELYMGNGFSGWEKVEG 197
             V+S+LS LE L M +    W  V+G
Sbjct:   640 VVSRLSSLETLDMTSSHYRWS-VQG 663

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 100/414 (24%), Positives = 174/414 (42%)

Query:     1 MHDVIHVVAV-SIATEERMFNVPNVAD--LEKKMEETIQKDPIAISLPHRDIQELPERLQ 57
             MHDV+   A+  ++++   F+   +A   L +  ++        +SL    ++ LP  + 
Sbjct:   431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNV- 489

Query:    58 CPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFXXXXXXXXXXXXXXXXNLQTLCLD 116
                ++  +L  +GN  + +V + F +    L++L                  +L++L L 
Sbjct:   490 IEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLR 549

Query:   117 WCE-LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175
              C+ L ++ ++  L KL+ L L  S I +LP  +  L+ L+ + +SN + L+ I    I 
Sbjct:   550 NCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTIL 609

Query:   176 KLSQLEELYM-GNGFS-GWEKVEGGSNASXXXXXXXXXXXXXXXXVPDAEILPPDFVSVE 233
             +LS LE L M G+ +S G +  E    A+                + D      +F S+ 
Sbjct:   610 QLSSLEVLDMAGSAYSWGIKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLT 669

Query:   234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
              +  K +        F P+   S          I  V++   + G   LLQ    L L  
Sbjct:   670 KRLTKFQF------LFSPIRSVSPPGTGEGCLAISDVNVSNASIG--WLLQHVTSLDLNY 721

Query:   294 LEGVQSVVHEL--DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351
              EG+  +   L       F  +K L +     +    G   ++  ++FP LE LSL  + 
Sbjct:   722 CEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCESQL--DLFPNLEELSLDNV- 778

Query:   352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS-MAKNLLRLQKVKVEDC 404
             NLE+I             L+++ V  CR+LK LFS   +A  L  LQ++KV  C
Sbjct:   779 NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSC 832

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 30/85 (35%), Positives = 50/85 (58%)

Query:   110 LQTLCLDWCELADIA-AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
             L+ L L +  + +I  +I  L +L  LS++ + I+ LP E+G L +L+ LDL    +L+ 
Sbjct:   560 LRVLDLSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQT 619

Query:   169 IAPNVISKLSQLEELYMGNGFSGWE 193
             I  + I  LS+LE L +   ++GWE
Sbjct:   620 IPRDAICWLSKLEVLNLYYSYAGWE 644

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 27/79 (34%), Positives = 47/79 (59%)

Query:   109 NLQTLCLDWC-ELADIAAIGQLKKLEILSLAY-SNINQLPVEIGQLTRLQLLDLSNCWWL 166
             NL+++ + +   L +I  + +   LEILSL +  ++ +LP  I  L +L++L++ NC  L
Sbjct:   627 NLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSML 686

Query:   167 EVIAPNVISKLSQLEELYM 185
             +VI  N+   L+ LE L M
Sbjct:   687 KVIPTNI--NLASLERLDM 703

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1333744 Gp1ba "glycoprotein 1b, alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 35/81 (43%), Positives = 49/81 (60%)

Query:   109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG-QLTRLQLLDLS-NCWWL 166
             +L  L LD CEL  +   G+L KLE L L+++N+  LP  +G  L  L  LD+S N   L
Sbjct:    72 HLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLP-SLGWALPALTTLDVSFNK--L 128

Query:   167 EVIAPNVISKLSQLEELYMGN 187
               ++P V+  LSQL+ELY+ N
Sbjct:   129 GSLSPGVLDGLSQLQELYLQN 149

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007155 "cell adhesion" evidence=ISO

GO:0007596 "blood coagulation" evidence=ISO;IMP

GO:0007599 "hemostasis" evidence=IMP

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031362 "anchored to external side of plasma membrane" evidence=IDA

GO:0042730 "fibrinolysis" evidence=ISO

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00070, Sum P(2) = 0.00070
 Identities = 47/150 (31%), Positives = 65/150 (43%)

Query:    42 ISLPHRDIQELPERL-QCPNLQLF-LLYTEGNGPMQVSDHFFEGMEGLKVLQFXXXXXXX 99
             I L  R   +L E L     L+L   L+  G   + V       M  LK L         
Sbjct:   720 IHLDFRRCSKLSEFLVDVSGLKLLEKLFLSGCSDLSVLPENIGAMTSLKELLLDGTAIKN 779

Query:   100 XXXXXXXXXNLQTLCLDWCELADIA-AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
                      NL+ L L  C++ ++   IG LK LE L L  + +  LP  IG L  LQ L
Sbjct:   780 LPESINRLQNLEILSLRGCKIQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDL 839

Query:   159 DLSNCWWLEVIAPNVISKLSQLEELYMGNG 188
              L  C  L  I P+ I++L  L++L++ NG
Sbjct:   840 HLVRCTSLSKI-PDSINELKSLKKLFI-NG 867

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q724E1 inlE "Internalin E" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 117 (46.2 bits), Expect = 0.00076, P = 0.00076
 Identities = 32/103 (31%), Positives = 53/103 (51%)

Query:    83 GMEGLKVLQFXXXXXXXXXXXXXXXXNLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI 142
             G++ LK+L                  NLQ L LD  ++ DI+ +  L  L+ LSL Y+ +
Sbjct:   138 GLKSLKMLHLIYTDITDVTSLAGLT-NLQELNLDINQITDISPLAALSNLQTLSLGYTQV 196

Query:   143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185
             + L   I  L++L +L+  NC  +  I+P  ++ LS L E+Y+
Sbjct:   197 SDL-TPIANLSKLTILNAENCK-VSDISP--LASLSSLTEVYL 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      443       411   0.00080  118 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  261 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.30u 0.12s 32.42t   Elapsed:  00:00:01
  Total cpu time:  32.30u 0.12s 32.42t   Elapsed:  00:00:01
  Start:  Fri May 10 19:12:43 2013   End:  Fri May 10 19:12:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	443
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-04

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 85  EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNIN 143
             LK L        SLPS L  L NL+ L L + +L+D+   +  L  L  L L+ + I+
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS 199

Query: 144 QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            LP EI  L+ L+ LDLSN   +E+   + +S L  L  L + N
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSN 241

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 23/148 (15%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEG--------MEGLKVLQFPG-IGSSSLPSSLGRLIN 109
           P   +  L T     + +S++   G           LKVL   G +    +P+SL  L +
Sbjct: 135 PRGSIPNLET-----LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDL--SNCW 164
           L+ L L   +L       +GQ+K L+ + L Y+N++ ++P EIG LT L  LDL  +N  
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-- 247

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSG 191
            L    P+ +  L  L+ L++  N  SG
Sbjct: 248 -LTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV 147
           NL+TL L   ++ D+  +  L  LE L L+ + I  L  
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	443
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.35
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.31
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.24
KOG4341	483	consensus F-box protein containing LRR [General fu	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG4341	483	consensus F-box protein containing LRR [General fu	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.72
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.52
PLN03150	623	hypothetical protein; Provisional	98.42
PLN03150	623	hypothetical protein; Provisional	98.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.97
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.96
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.91
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.48
PRK15386	426	type III secretion protein GogB; Provisional	97.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.13
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.61
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.59
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.34
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.38
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.31
smart00370	26	LRR Leucine-rich repeats, outliers.	86.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.24

>PLN03210 Resistant to P

Probab=99.95  E-value=2.6e-26  Score=248.26  Aligned_cols=314  Identities=21%  Similarity=0.276  Sum_probs=225.9

Q ss_pred             CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCC-CCCcccccCCCCCCEEEc
Q 013440           59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE-LADIAAIGQLKKLEILSL  137 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~l  137 (443)
                      ++|+.|.+.++..  ..+|..+  ...+|+.|++.++.+..++..+..+++|++++++++. +..++.++.+++|+.|++
T Consensus       589 ~~Lr~L~~~~~~l--~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L  664 (1153)
T PLN03210        589 PKLRLLRWDKYPL--RCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL  664 (1153)
T ss_pred             cccEEEEecCCCC--CCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence            4577777777763  6666654  5688888999888888888888888899999998876 444666788889999999


Q ss_pred             CCC-CCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440          138 AYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (443)
Q Consensus       138 ~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (443)
                      ++| .+..+|..+.++++|+.|++++|...+.+|..  ..+++|+.|++++|......+           ....+|+.|+
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p-----------~~~~nL~~L~  731 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFP-----------DISTNISWLD  731 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccccc-----------cccCCcCeee
Confidence            888 56688888889999999999988888888874  278889999988875432221           1245788999


Q ss_pred             eecCCCCCCCCccccccCcEEEEEecCC---CCCC---CCchhcccccceeEEEcCccccccccccchhhHhhcccceee
Q 013440          217 IEVPDAEILPPDFVSVELQRYKIRIGDG---PEDE---FDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLW  290 (443)
Q Consensus       217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  290 (443)
                      +++|.+..+|..+.+++|+.|.+.....   +...   .......+++|+.|++++|.....+  +..+..+ ++|+.|+
T Consensus       732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L-~~L~~L~  808 (1153)
T PLN03210        732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNL-HKLEHLE  808 (1153)
T ss_pred             cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc--ChhhhCC-CCCCEEE
Confidence            9999888888776667888777643211   0000   0001123567888888887654443  3344443 7888889


Q ss_pred             ccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccccccc
Q 013440          291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNL  370 (443)
Q Consensus       291 L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L  370 (443)
                      +++|..+..++...    .+++|++|++++|..++.++        ....+|+.|++.+ +.++++|..    ...+++|
T Consensus       809 Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p--------~~~~nL~~L~Ls~-n~i~~iP~s----i~~l~~L  871 (1153)
T PLN03210        809 IENCINLETLPTGI----NLESLESLDLSGCSRLRTFP--------DISTNISDLNLSR-TGIEEVPWW----IEKFSNL  871 (1153)
T ss_pred             CCCCCCcCeeCCCC----CccccCEEECCCCCcccccc--------ccccccCEeECCC-CCCccChHH----HhcCCCC
Confidence            88888777766532    57888889998888776543        1235677888776 366666543    3568888


Q ss_pred             ceeeeccCcCcccccChhhhhcccccceeeeccCccccccc
Q 013440          371 RIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII  411 (443)
Q Consensus       371 ~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~  411 (443)
                      +.|++.+|++++.++..  ...++.|+.+++.+|++++++.
T Consensus       872 ~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        872 SFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             CEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence            88888888888888743  4667888888888888887653

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1.6e-25  Score=241.49  Aligned_cols=195  Identities=20%  Similarity=0.236  Sum_probs=113.8

Q ss_pred             hccCCCCeEEeCCCCCCC-CCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc-cccccccCCC
Q 013440           33 ETIQKDPIAISLPHRDIQ-ELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLI  108 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~p~~l~~l~  108 (443)
                      ...++.++.|++++|.+. .+|...  .+++|+.|++++|.. ...+|.   ..+++|++|++++|.+. .+|..++.++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence            345677788888877773 555433  667777777777765 444443   34566666666666665 3556666666


Q ss_pred             CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440          109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (443)
Q Consensus       109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (443)
                      +|++|++++|.+..  +..++++++|++|++++|.+. .+|..++++++|+.|++++|...+.+|.. ++.+++|++|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence            66666666666543  455666666666666666555 45556666666666666665555555554 556666666666


Q ss_pred             cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-ccccCcEEEEE
Q 013440          186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-VSVELQRYKIR  240 (443)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~  240 (443)
                      ++|.+....+        ..++.+++|++|++++|.+. .+|..+ .+++|+.+++.
T Consensus       244 ~~n~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        244 VYNNLTGPIP--------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             cCceeccccC--------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence            6665443332        44555555555555555542 333332 23455555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=3.1e-25  Score=239.19  Aligned_cols=358  Identities=17%  Similarity=0.108  Sum_probs=221.5

Q ss_pred             hhccCCCCeEEeCCCCCC-CCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCC
Q 013440           32 EETIQKDPIAISLPHRDI-QELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLI  108 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~  108 (443)
                      ..+.++++++|++++|.+ ..+|... ++++|++|++++|.. ...+|..+ .++.+|++|++++|.+.. +|..++.++
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC-cCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCC
Confidence            466788899999998887 4555544 788899999988886 55666654 788888888888888764 777888888


Q ss_pred             CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440          109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (443)
Q Consensus       109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (443)
                      +|++|++++|.+..  +..++++++|++|++++|.+. .+|..+.++++|+.|++++|.+.+.+|.. +..+++|+.|++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l  315 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHL  315 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEEC
Confidence            88888888888765  567788888888888888776 56777778888888888887766666654 677778888888


Q ss_pred             cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-ccccCcEEEEEecCCCC-----------------
Q 013440          186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-VSVELQRYKIRIGDGPE-----------------  246 (443)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~~~~~~~-----------------  246 (443)
                      ++|.+....+        ..++.+++|+.|++++|.+. .+|..+ ..++|+.+++..+....                 
T Consensus       316 ~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        316 FSNNFTGKIP--------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             CCCccCCcCC--------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence            7776654433        44555666666666666553 344333 23455555553221110                 


Q ss_pred             ------CCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEec
Q 013440          247 ------DEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD  320 (443)
Q Consensus       247 ------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  320 (443)
                            ......+..+++|+.|++.+|.+.+..  +..+... ++|+.|++++|.....++..+.   .+++|+.|++.+
T Consensus       388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~  461 (968)
T PLN00113        388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKL-PLVYFLDISNNNLQGRINSRKW---DMPSLQMLSLAR  461 (968)
T ss_pred             cCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcC-CCCCEEECcCCcccCccChhhc---cCCCCcEEECcC
Confidence                  011123445666777777776654433  2223322 5666666666554443333222   455666666665


Q ss_pred             ccCceeeccc------------------ccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcc
Q 013440          321 CSEILHIVGS------------------VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLK  382 (443)
Q Consensus       321 ~~~l~~~~~~------------------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~  382 (443)
                      |.....++..                  ........+++|+.|+++++.-...++..    ...+++|++|++++|.-..
T Consensus       462 n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~  537 (968)
T PLN00113        462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSG  537 (968)
T ss_pred             ceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH----HcCccCCCEEECCCCcccc
Confidence            5322222100                  00012234556666666664322222221    3457778888887765444


Q ss_pred             cccChhhhhcccccceeeeccCcccccccc
Q 013440          383 YLFSFSMAKNLLRLQKVKVEDCDDLKMIIG  412 (443)
Q Consensus       383 ~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~  412 (443)
                      .+|  .....+++|+.|++++|.-...+|.
T Consensus       538 ~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        538 QIP--ASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             cCC--hhHhCcccCCEEECCCCcccccCCh
Confidence            444  3356788888888888865545543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-23  Score=197.44  Aligned_cols=340  Identities=15%  Similarity=0.171  Sum_probs=154.9

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcE
Q 013440           35 IQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQT  112 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~  112 (443)
                      ++++++.+++..|.++.+|.+. ...+|+.|++.+|.+  ..+..+-++-++.||.||++.|.++.+| ..+..-.++++
T Consensus       100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~  177 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK  177 (873)
T ss_pred             cCCcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence            3344444444444444444444 222344444444442  2333332344444555555555444433 22223344555


Q ss_pred             EEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          113 LCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       113 L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      |+++.|.|.+  ...|..+.+|..|.|++|+++.+|.- +.++++|+.|++..|. ++....-.|..+++|+.|.+..|.
T Consensus       178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcC
Confidence            5555555544  34444555555555555555555443 3335555555555532 222211124455555555555554


Q ss_pred             CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (443)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (443)
                      +..-..        ..+-.+.++++|++..|.+....+..  .++.|+.|+++.+.+.... ....+.+++|+.|+++.|
T Consensus       257 I~kL~D--------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  257 ISKLDD--------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             cccccC--------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee-cchhhhcccceeEecccc
Confidence            433332        22334555555555555554444332  3355555555444332211 011245566666666665


Q ss_pred             cccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceec
Q 013440          268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL  347 (443)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  347 (443)
                      ++..   ++..-...+..|+.|.|++|....-....+.   ++.+|++|+|+.+.---.+.|  ......++|+|+.|.+
T Consensus       328 ~i~~---l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~---~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  328 RITR---LDEGSFRVLSQLEELNLSHNSIDHLAEGAFV---GLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRL  399 (873)
T ss_pred             cccc---CChhHHHHHHHhhhhcccccchHHHHhhHHH---HhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheee
Confidence            4421   1222233345666666666543322222222   556666666666632111111  1112233667777777


Q ss_pred             cccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeee
Q 013440          348 MFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKV  401 (443)
Q Consensus       348 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i  401 (443)
                      .+ +++++++...+   ..+++|++|++.+ +-+.++.+.++ ..+ .|++|.+
T Consensus       400 ~g-Nqlk~I~krAf---sgl~~LE~LdL~~-NaiaSIq~nAF-e~m-~Lk~Lv~  446 (873)
T KOG4194|consen  400 TG-NQLKSIPKRAF---SGLEALEHLDLGD-NAIASIQPNAF-EPM-ELKELVM  446 (873)
T ss_pred             cC-ceeeecchhhh---ccCcccceecCCC-Ccceeeccccc-ccc-hhhhhhh
Confidence            66 46666654322   2366666676655 33444443332 223 4555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.9e-23  Score=193.95  Aligned_cols=341  Identities=16%  Similarity=0.132  Sum_probs=244.3

Q ss_pred             CCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEE
Q 013440           37 KDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTL  113 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L  113 (443)
                      ...+.|++++|.+..+...  .++++|+.+.+.+|..  ..+|.. .+...+|+.|++..|.|..+. +.+..++.|++|
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSL  154 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence            4466789999888665533  4889999999998885  666662 234566999999999888754 567888899999


Q ss_pred             EecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          114 CLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       114 ~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      +++.|.|+.  -..+..-.++++|+|++|+++.+-. .+..+.+|..|.++. +.+..+|..+|+++++|+.|++..|.+
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccce
Confidence            999998877  2566666889999999999887654 377888899999988 566778877788899999999988877


Q ss_pred             CcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcc
Q 013440          191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK  268 (443)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (443)
                      ....-        ..+.+++.|+.|.+..|++..+.+.+  .+.+++++++..+...... .-.+..+..|+.|+++.|.
T Consensus       234 rive~--------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  234 RIVEG--------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             eeehh--------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhh
Confidence            65433        66788888899999999988777766  4588888888655443321 0123577888888999887


Q ss_pred             ccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440          269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM  348 (443)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  348 (443)
                      +. .+....|-.  +++|+.|+|++|....--+..+.   .+..|++|.|+++. +..+.    ......+.+|++|+++
T Consensus       305 I~-rih~d~Wsf--tqkL~~LdLs~N~i~~l~~~sf~---~L~~Le~LnLs~Ns-i~~l~----e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  305 IQ-RIHIDSWSF--TQKLKELDLSSNRITRLDEGSFR---VLSQLEELNLSHNS-IDHLA----EGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hh-eeecchhhh--cccceeEeccccccccCChhHHH---HHHHhhhhcccccc-hHHHH----hhHHHHhhhhhhhcCc
Confidence            73 333344432  37899999988876554444444   67889999999883 33331    1234467788888888


Q ss_pred             ccccccccc-cccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440          349 FLTNLETIC-YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       349 ~c~~l~~~~-~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      +. ++.-.. .+..+ -..+++|++|.+.+ +++++++..+ +..++.|++|++.+-.
T Consensus       374 ~N-~ls~~IEDaa~~-f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  374 SN-ELSWCIEDAAVA-FNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNA  427 (873)
T ss_pred             CC-eEEEEEecchhh-hccchhhhheeecC-ceeeecchhh-hccCcccceecCCCCc
Confidence            74 333221 12111 23388889999987 7888886544 4678899999886654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-22  Score=208.76  Aligned_cols=361  Identities=24%  Similarity=0.299  Sum_probs=237.2

Q ss_pred             CchhHHHHHHHHhh-----ccceeeccCcchhhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCcc
Q 013440            1 MHDVIHVVAVSIAT-----EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ   75 (443)
Q Consensus         1 mhdli~~~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~   75 (443)
                      |||+|||||.++++     +++.+ +..+.++.+.+....+..+|++.+.++.+..++....+++|++|-+.+|......
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~  561 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE  561 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence            99999999999999     66644 3433345557778888999999999999999998889999999999998621477


Q ss_pred             CcHHHHhcCCCCCEEEcCCCc-cccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCC-CCCCchhhcCC
Q 013440           76 VSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSN-INQLPVEIGQL  152 (443)
Q Consensus        76 ~~~~~~~~l~~L~~L~l~~~~-~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l  152 (443)
                      ++..+|..++.|++||+++|. +.++|+.++.+.+||||+++++.++. |.+++++..|.+|++..+. +..+|.....|
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhc
Confidence            788889999999999999876 56799999999999999999999988 8899999999999998883 44556666678


Q ss_pred             CCCCEEeccCCc-cccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCE----EEeecCCCCCCCC
Q 013440          153 TRLQLLDLSNCW-WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTT----LEIEVPDAEILPP  227 (443)
Q Consensus       153 ~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~  227 (443)
                      .+|++|.+.... ..+......+..+.+|+.+.......          .....+..+.+|++    +.+.++.....+ 
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~-  710 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV----------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLI-  710 (889)
T ss_pred             ccccEEEeeccccccchhhHHhhhcccchhhheeecchh----------HhHhhhhhhHHHHHHhHhhhhcccccceee-
Confidence            888888887633 11111111133344444444322111          00122223333321    111111111111 


Q ss_pred             ccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccccc--c-hhhHhhcccceeeccccCCcccccccc
Q 013440          228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN--D-GTKMLLQRTEDLWLETLEGVQSVVHEL  304 (443)
Q Consensus       228 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~-~~~~~~~~L~~L~L~~~~~~~~~~~~~  304 (443)
                                             ..+..+.+|+.|.+.++.........  . ....+++++..+.+..|....+..+..
T Consensus       711 -----------------------~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~  767 (889)
T KOG4658|consen  711 -----------------------SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL  767 (889)
T ss_pred             -----------------------cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence                                   12244555555555554443211100  0 011124567777777777777665533


Q ss_pred             ccCCCCCCccEEEEecccCceeeccccccc-----ccCccCcccce-eccccccccccccccccccccccccceeeeccC
Q 013440          305 DDGEGFPRLKRLLVTDCSEILHIVGSVRRV-----RCEVFPLLEAL-SLMFLTNLETICYSQLREDQSFSNLRIINVDSC  378 (443)
Q Consensus       305 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c  378 (443)
                          ..|+|+.|.+.+|..++++.+.....     ....|.++..+ .+.+.+++.++...+++    ++.|+++.+..|
T Consensus       768 ----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~----~~~l~~~~ve~~  839 (889)
T KOG4658|consen  768 ----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS----FLKLEELIVEEC  839 (889)
T ss_pred             ----ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC----ccchhheehhcC
Confidence                35899999999998777654332111     13456667777 57666777777655444    777999999999


Q ss_pred             cCcccccChhhhhcccccceeeeccC-ccccccccC
Q 013440          379 RKLKYLFSFSMAKNLLRLQKVKVEDC-DDLKMIIGP  413 (443)
Q Consensus       379 ~~l~~~~~~~~~~~~~~L~~L~i~~C-~~l~~~~~~  413 (443)
                      |++..+|         .+..+.+.+| +.+...++.
T Consensus       840 p~l~~~P---------~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  840 PKLGKLP---------LLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             cccccCc---------cccccceeccccceeecCCc
Confidence            8887764         4566777786 777766655

>PLN03210 Resistant to P

Probab=99.86  E-value=1.9e-20  Score=202.96  Aligned_cols=378  Identities=19%  Similarity=0.222  Sum_probs=271.6

Q ss_pred             CchhHHHHHHHHhhccce-----eeccCcchhhh-hhhhccCCCCeEEeCCCCCCCCCC----CcCCCCCCcEEEcccCC
Q 013440            1 MHDVIHVVAVSIATEERM-----FNVPNVADLEK-KMEETIQKDPIAISLPHRDIQELP----ERLQCPNLQLFLLYTEG   70 (443)
Q Consensus         1 mhdli~~~~~~i~~~~~~-----~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~l~----~~~~~~~L~~L~l~~~~   70 (443)
                      |||++|+||+++++++..     ...++..++.. ........+++.+.+.-..++++.    .+.++++|+.|.+.++.
T Consensus       490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~  569 (1153)
T PLN03210        490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK  569 (1153)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence            999999999999986521     01111111111 112223356676666655553322    13379999999997653


Q ss_pred             C-----CCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCC-CCC
Q 013440           71 N-----GPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS-NIN  143 (443)
Q Consensus        71 ~-----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~-~~~  143 (443)
                      .     ....+|..+..-..+||.|.+.++.+..+|..+ ...+|++|++.++.+.. +..+..+++|+.|+++++ .++
T Consensus       570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~  648 (1153)
T PLN03210        570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK  648 (1153)
T ss_pred             ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence            1     022455554222357999999999999999887 57899999999999888 678889999999999988 566


Q ss_pred             CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC-
Q 013440          144 QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA-  222 (443)
Q Consensus       144 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-  222 (443)
                      .+| .+..+++|+.|++.+|.....+|.. ++.+++|+.|++++|......+        ..+ ++++|+.|++++|.. 
T Consensus       649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp--------~~i-~l~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        649 EIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP--------TGI-NLKSLYRLNLSGCSRL  717 (1153)
T ss_pred             cCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC--------CcC-CCCCCCEEeCCCCCCc
Confidence            776 4788999999999999988899986 7899999999999876443332        222 688999999998864 


Q ss_pred             CCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc----ccccchhhHhhcccceeeccccCCcc
Q 013440          223 EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI----LQENDGTKMLLQRTEDLWLETLEGVQ  298 (443)
Q Consensus       223 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~L~~L~L~~~~~~~  298 (443)
                      ..+|.  ..++|+.+++........   +....+++|+.|.+..+.....    .+........+++|+.|++++|....
T Consensus       718 ~~~p~--~~~nL~~L~L~~n~i~~l---P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~  792 (1153)
T PLN03210        718 KSFPD--ISTNISWLDLDETAIEEF---PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV  792 (1153)
T ss_pred             ccccc--ccCCcCeeecCCCccccc---cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence            45554  346888888855443221   2222467777777765332110    01111112234789999999998888


Q ss_pred             ccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccC
Q 013440          299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC  378 (443)
Q Consensus       299 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c  378 (443)
                      .++..+.   .+++|+.|++.+|.+++.++      ....+++|+.|++++|..+..++.       ..++|++|++.+ 
T Consensus       793 ~lP~si~---~L~~L~~L~Ls~C~~L~~LP------~~~~L~sL~~L~Ls~c~~L~~~p~-------~~~nL~~L~Ls~-  855 (1153)
T PLN03210        793 ELPSSIQ---NLHKLEHLEIENCINLETLP------TGINLESLESLDLSGCSRLRTFPD-------ISTNISDLNLSR-  855 (1153)
T ss_pred             ccChhhh---CCCCCCEEECCCCCCcCeeC------CCCCccccCEEECCCCCccccccc-------cccccCEeECCC-
Confidence            8877665   89999999999999998876      333689999999999998877653       247899999987 


Q ss_pred             cCcccccChhhhhcccccceeeeccCccccccccCC
Q 013440          379 RKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPD  414 (443)
Q Consensus       379 ~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~  414 (443)
                      ..++.+|.  .+..+++|+.|++.+|.+++.++...
T Consensus       856 n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~~  889 (1153)
T PLN03210        856 TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLNI  889 (1153)
T ss_pred             CCCccChH--HHhcCCCCCEEECCCCCCcCccCccc
Confidence            57888873  46889999999999999999987653

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=5.4e-23  Score=194.46  Aligned_cols=325  Identities=16%  Similarity=0.159  Sum_probs=227.1

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440           32 EETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL  110 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L  110 (443)
                      ..+.+.+++||++++|++..+.+-. .++.||.+++..|..-...+|..+| .+..|.+||++.|.+.++|..+.+-+++
T Consensus        50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~  128 (1255)
T KOG0444|consen   50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS  128 (1255)
T ss_pred             HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence            4566788999999999886666544 8999999999988864566788885 7999999999999999999999999999


Q ss_pred             cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440          111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (443)
Q Consensus       111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (443)
                      -.|++++|.|.. | ..+-++..|.+|||++|++..+|+.+..+..|++|.+++|+.. .....-+..+++|+.|.+++.
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccc
Confidence            999999999988 5 5667899999999999999999999999999999999997532 111111345667777777765


Q ss_pred             CCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440          189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (443)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (443)
                      +-+       ....+..+..+.||+.++++.|....+|... ...+|++|+++.+.+....  --.+...++++|+++.|
T Consensus       208 qRT-------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  208 QRT-------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN--MTEGEWENLETLNLSRN  278 (1255)
T ss_pred             cch-------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee--ccHHHHhhhhhhccccc
Confidence            432       2234467888899999999999998888865 3477887777655443322  11234566777777776


Q ss_pred             cccccccccchhhHhhcccceeeccccCCc-cccccccccCCCCCCccEEEEecccCceeecccccccccCccCccccee
Q 013440          268 KKVSILQENDGTKMLLQRTEDLWLETLEGV-QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS  346 (443)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  346 (443)
                      .+.   ..|+++.++ ++|+.|...++... ..+|..   ++.+..|+++...++ +++-++     .++..+++|+.|.
T Consensus       279 QLt---~LP~avcKL-~kL~kLy~n~NkL~FeGiPSG---IGKL~~Levf~aanN-~LElVP-----EglcRC~kL~kL~  345 (1255)
T KOG0444|consen  279 QLT---VLPDAVCKL-TKLTKLYANNNKLTFEGIPSG---IGKLIQLEVFHAANN-KLELVP-----EGLCRCVKLQKLK  345 (1255)
T ss_pred             hhc---cchHHHhhh-HHHHHHHhccCcccccCCccc---hhhhhhhHHHHhhcc-ccccCc-----hhhhhhHHHHHhc
Confidence            552   234445444 66777766655432 233443   336666666666654 343332     2455666777777


Q ss_pred             ccccccccccccccccccccccccceeeeccCcCccccc
Q 013440          347 LMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF  385 (443)
Q Consensus       347 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~  385 (443)
                      +.+ +++..+|.+    .+-++.|+.|++...|++..-|
T Consensus       346 L~~-NrLiTLPea----IHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  346 LDH-NRLITLPEA----IHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccc-cceeechhh----hhhcCCcceeeccCCcCccCCC
Confidence            754 455555554    3446777777777777766544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=1.3e-22  Score=191.89  Aligned_cols=342  Identities=20%  Similarity=0.232  Sum_probs=174.2

Q ss_pred             CCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc--cccccccCCCCCcEE
Q 013440           37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS--SLPSSLGRLINLQTL  113 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~p~~l~~l~~L~~L  113 (443)
                      ++++.|-+...++..+|.-. .+.+|+.|.+.+|..  ..+-..+ +.++.||.+.++.|++.  ++|..+-.+..|..|
T Consensus        32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L--~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l  108 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL--ISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL  108 (1255)
T ss_pred             hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh--Hhhhhhh-ccchhhHHHhhhccccccCCCCchhcccccceee
Confidence            34444444444444444322 444444444444442  2222221 34444444444444442  244444444445555


Q ss_pred             EecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       114 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      ++++|+++. |..+.+.+++.+|+|++|++..+|.. +.+++.|-.|++++ +..+.+|.. +.++..|++|.+++|++.
T Consensus       109 DLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  109 DLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             ecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence            555554444 44444444455555555555444443 33444444455544 333444443 344444555555444432


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCC--CCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcc
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDA--EILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK  268 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (443)
                      ...        +..+-.++.|++|.+++..-  ..+|..+ .+.+|..++++.+..+...  .-+..+++|+.|++++|.
T Consensus       187 hfQ--------LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP--ecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  187 HFQ--------LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP--ECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             HHH--------HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch--HHHhhhhhhheeccCcCc
Confidence            111        01222333334444443332  2344433 3344444444333322221  123455555666666654


Q ss_pred             ccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440          269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM  348 (443)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  348 (443)
                      +.+.. .  ..... .++++|+++++.... +|....   .+++|+.|.+.++. ++   .++.-.+++.+..|+.++..
T Consensus       257 iteL~-~--~~~~W-~~lEtLNlSrNQLt~-LP~avc---KL~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~aa  324 (1255)
T KOG0444|consen  257 ITELN-M--TEGEW-ENLETLNLSRNQLTV-LPDAVC---KLTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFHAA  324 (1255)
T ss_pred             eeeee-c--cHHHH-hhhhhhccccchhcc-chHHHh---hhHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHHhh
Confidence            42211 1  11111 456666666654432 333322   67778877777662 22   22233467778888888888


Q ss_pred             ccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCccccccccC
Q 013440          349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP  413 (443)
Q Consensus       349 ~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~  413 (443)
                      + +.++-+|.+    ...++.|+.|.+. |+.+..+|  ..+.-++.|+.|+++..|++..-|..
T Consensus       325 n-N~LElVPEg----lcRC~kL~kL~L~-~NrLiTLP--eaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  325 N-NKLELVPEG----LCRCVKLQKLKLD-HNRLITLP--EAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             c-cccccCchh----hhhhHHHHHhccc-ccceeech--hhhhhcCCcceeeccCCcCccCCCCc
Confidence            7 467766765    4569999999995 67777787  55688999999999999998765544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=7.1e-22  Score=177.82  Aligned_cols=229  Identities=19%  Similarity=0.242  Sum_probs=113.5

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440           32 EETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL  110 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L  110 (443)
                      ....+..+.++.++++....+|+.+ .+.++..++.+.|..  ..+|..+ ..+..|+.++.++|.+..+|+.++.+..|
T Consensus        63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l--s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l  139 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL--SELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDL  139 (565)
T ss_pred             hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH--hhccHHH-hhhhhhhhhhccccceeecCchHHHHhhh
Confidence            3445555666666666665555544 555555666666553  5555554 45555555565555555555555555555


Q ss_pred             cEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          111 QTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       111 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      +.++..+|.+.. |+++.++.+|..+++.+++++++|+...+|+.|++++... +..+.+|.. ++.+.+|..|++..|.
T Consensus       140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRNK  217 (565)
T ss_pred             hhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhcc
Confidence            555555555555 4555555555555555555554444433344444444444 333444433 3334444433333333


Q ss_pred             CCcccc--cC-----------CCchhh-hhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhc
Q 013440          190 SGWEKV--EG-----------GSNASL-VELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLV  254 (443)
Q Consensus       190 ~~~~~~--~~-----------~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~  254 (443)
                      +...+.  +.           ...-.+ +..+++.++..|++..|++.+.|..+ ...+|..++++-+.+....  ..++
T Consensus       218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp--~sLg  295 (565)
T KOG0472|consen  218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP--YSLG  295 (565)
T ss_pred             cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC--cccc
Confidence            222211  00           000011 22345666666666666666666665 3356666666444333322  2334


Q ss_pred             ccccceeEEEcCcc
Q 013440          255 KSEASRLMMLKGIK  268 (443)
Q Consensus       255 ~~~~L~~L~l~~~~  268 (443)
                      ++ .|+.|-+.||.
T Consensus       296 nl-hL~~L~leGNP  308 (565)
T KOG0472|consen  296 NL-HLKFLALEGNP  308 (565)
T ss_pred             cc-eeeehhhcCCc
Confidence            44 44555444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=6.7e-18  Score=166.98  Aligned_cols=347  Identities=20%  Similarity=0.164  Sum_probs=221.2

Q ss_pred             CeEEeCCCCCCCCCC--CcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440           39 PIAISLPHRDIQELP--ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (443)
Q Consensus        39 l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~  116 (443)
                      +.+|++..|.+-..|  -.-+.-+|+.|++++|..  ..+|..+ ..+.+|+.|+++.|.+..+|.+.+.+.+|+++++.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence            677777777764433  222555699999999985  7778776 67999999999999999999999999999999999


Q ss_pred             CCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE--------------------------------------
Q 013440          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL--------------------------------------  157 (443)
Q Consensus       117 ~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~--------------------------------------  157 (443)
                      ++.+.. |..+..+.+|++|+++.|.+..+|..+..++.+..                                      
T Consensus       100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l  179 (1081)
T KOG0618|consen  100 NNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL  179 (1081)
T ss_pred             cchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh
Confidence            999888 89999999999999999988766654433332222                                      


Q ss_pred             ---EeccCCccccccchHHhhcC--------------------CCCcEEEccCCCCCcccccC-------------CCch
Q 013440          158 ---LDLSNCWWLEVIAPNVISKL--------------------SQLEELYMGNGFSGWEKVEG-------------GSNA  201 (443)
Q Consensus       158 ---L~l~~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~-------------~~~~  201 (443)
                         |++..|... ...   +..+                    ++|+.|..+.|.+....+..             ....
T Consensus       180 ~~~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~  255 (1081)
T KOG0618|consen  180 THQLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN  255 (1081)
T ss_pred             heeeecccchhh-hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc
Confidence               223222211 000   1111                    23333333333332111100             1112


Q ss_pred             hhhhccCCCCCCEEEeecCCCCCCCCccc-cccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccc---
Q 013440          202 SLVELERLTELTTLEIEVPDAEILPPDFV-SVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEND---  277 (443)
Q Consensus       202 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---  277 (443)
                      .+..++.+.+|+.++...|.+..+|..+. .++|+.+.+..++.....  +.++..+.|++|+++.|++.. .+...   
T Consensus       256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip--~~le~~~sL~tLdL~~N~L~~-lp~~~l~v  332 (1081)
T KOG0618|consen  256 LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIP--PFLEGLKSLRTLDLQSNNLPS-LPDNFLAV  332 (1081)
T ss_pred             chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCC--Ccccccceeeeeeehhccccc-cchHHHhh
Confidence            23556778899999999999888887763 377877777544433222  334567888888888876532 11100   


Q ss_pred             --------------------hhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccC
Q 013440          278 --------------------GTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE  337 (443)
Q Consensus       278 --------------------~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  337 (443)
                                          .-...++.|+.|++.+|.........+.   +++.||.|+|+++ .+..+++    ....
T Consensus       333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~---~~~hLKVLhLsyN-rL~~fpa----s~~~  404 (1081)
T KOG0618|consen  333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV---NFKHLKVLHLSYN-RLNSFPA----SKLR  404 (1081)
T ss_pred             hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc---cccceeeeeeccc-ccccCCH----HHHh
Confidence                                0001123466667766665554433333   7889999999988 4444442    2556


Q ss_pred             ccCcccceeccccccccccccc------------------cccccccccccceeeeccCcCcccccChhhhhccccccee
Q 013440          338 VFPLLEALSLMFLTNLETICYS------------------QLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV  399 (443)
Q Consensus       338 ~~~~L~~L~l~~c~~l~~~~~~------------------~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L  399 (443)
                      .++.|+.|.+++ ++++.++..                  .+|+....+.|+.++++ |..|+..-.....+ .+.|++|
T Consensus       405 kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyL  481 (1081)
T KOG0618|consen  405 KLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYL  481 (1081)
T ss_pred             chHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCC-Cccccee
Confidence            677788888877 466665421                  23445567777888884 67777765433333 3788888


Q ss_pred             eeccCcc
Q 013440          400 KVEDCDD  406 (443)
Q Consensus       400 ~i~~C~~  406 (443)
                      +++|-.+
T Consensus       482 dlSGN~~  488 (1081)
T KOG0618|consen  482 DLSGNTR  488 (1081)
T ss_pred             eccCCcc
Confidence            8877764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=2.3e-17  Score=148.99  Aligned_cols=109  Identities=19%  Similarity=0.220  Sum_probs=81.6

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440           32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~  111 (443)
                      ..+.++++..|++..|++..+|.+..|..|..+.+..|..  ..+|.+++..+.++.+||+++|.+.++|+++..+++|.
T Consensus       201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~  278 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE  278 (565)
T ss_pred             hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH--HhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence            4566667777777777777777777777777777777763  67777777777888888888888877887777777788


Q ss_pred             EEEecCCCCCC-cccccCCCCCCEEEcCCCCCC
Q 013440          112 TLCLDWCELAD-IAAIGQLKKLEILSLAYSNIN  143 (443)
Q Consensus       112 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~  143 (443)
                      +|++++|.++. |..++++ +|+.|.+.||.+.
T Consensus       279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             hhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            88888877777 7777777 7777777776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=5.2e-17  Score=160.79  Aligned_cols=209  Identities=20%  Similarity=0.201  Sum_probs=112.4

Q ss_pred             CCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC--------------CCchhhhhccCCCCCCEEEeec
Q 013440          154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG--------------GSNASLVELERLTELTTLEIEV  219 (443)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~l~~l~~L~~L~l~~  219 (443)
                      +|+.++++. +....+|. ++..+.+|+.+++.+|.+.......              .....+..++..+.|++|++..
T Consensus       242 nl~~~dis~-n~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  242 NLQYLDISH-NNLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cceeeecch-hhhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            455555555 34455674 4778888888888777664332211              0111123345567777888888


Q ss_pred             CCCCCCCCcccc---ccCcEEEEEecCC-----------------------CCCCCCchhcccccceeEEEcCccccccc
Q 013440          220 PDAEILPPDFVS---VELQRYKIRIGDG-----------------------PEDEFDPLLVKSEASRLMMLKGIKKVSIL  273 (443)
Q Consensus       220 ~~~~~~~~~~~~---~~L~~l~l~~~~~-----------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (443)
                      |.+..+|...+.   ..|..++....+.                       .++...+.+...++|+.|+++.|.+. . 
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~-  397 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S-  397 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c-
Confidence            877777765422   1233333221111                       11112244455566666666654431 1 


Q ss_pred             cccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccc
Q 013440          274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL  353 (443)
Q Consensus       274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  353 (443)
                       +++.....++.|+.|+|++|.... ++....   .++.|+.|...++ .+...|      ....+|.|+.+|++ |+++
T Consensus       398 -fpas~~~kle~LeeL~LSGNkL~~-Lp~tva---~~~~L~tL~ahsN-~l~~fP------e~~~l~qL~~lDlS-~N~L  464 (1081)
T KOG0618|consen  398 -FPASKLRKLEELEELNLSGNKLTT-LPDTVA---NLGRLHTLRAHSN-QLLSFP------ELAQLPQLKVLDLS-CNNL  464 (1081)
T ss_pred             -CCHHHHhchHHhHHHhcccchhhh-hhHHHH---hhhhhHHHhhcCC-ceeech------hhhhcCcceEEecc-cchh
Confidence             233222233556666666654322 222222   4556666665555 232322      56678899999997 4788


Q ss_pred             cccccccccccccccccceeeeccCcCcc
Q 013440          354 ETICYSQLREDQSFSNLRIINVDSCRKLK  382 (443)
Q Consensus       354 ~~~~~~~~~~~~~~~~L~~L~i~~c~~l~  382 (443)
                      +.+.....   .--|+|++|++.|..++.
T Consensus       465 ~~~~l~~~---~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  465 SEVTLPEA---LPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             hhhhhhhh---CCCcccceeeccCCcccc
Confidence            87754311   112899999999987643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-17  Score=132.34  Aligned_cols=165  Identities=27%  Similarity=0.384  Sum_probs=108.8

Q ss_pred             CCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccC
Q 013440           50 QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQ  128 (443)
Q Consensus        50 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~  128 (443)
                      .+++...++.+++.|.+++|..  ..+|+.+ ..+.+|++|++.+|.++++|.+++.+++|+.|+++-+.+.. |.+++.
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             hhcccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence            4445555666666677777664  4555554 56777777777777777777777777777777777666655 667777


Q ss_pred             CCCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhc
Q 013440          129 LKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL  206 (443)
Q Consensus       129 l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l  206 (443)
                      ++.|+.||+.+|.+.  .+|..+..|..|+.|+++. +..+.+|.+ ++++++|+.|.+..|.....         +.++
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~l---------pkei  169 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLSL---------PKEI  169 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhhC---------cHHH
Confidence            777777777777665  4666666777777777766 344556665 56777777777666654332         2666


Q ss_pred             cCCCCCCEEEeecCCCCCCCCc
Q 013440          207 ERLTELTTLEIEVPDAEILPPD  228 (443)
Q Consensus       207 ~~l~~L~~L~l~~~~~~~~~~~  228 (443)
                      +.+..|+.|.+.+|....+|.+
T Consensus       170 g~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  170 GDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHHHHHhcccceeeecChh
Confidence            7777777777777777666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=7.7e-17  Score=129.26  Aligned_cols=164  Identities=21%  Similarity=0.282  Sum_probs=146.6

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccccc
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG  105 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~  105 (443)
                      +++.+..-..+.+++|-+++|++..+|+.+ .+.+|+.|++++|..  ..+|.++ +.++.||.|+++.|.+..+|.+|+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccC
Confidence            455566677788999999999999998877 999999999999995  8899887 899999999999999999999999


Q ss_pred             CCCCCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcE
Q 013440          106 RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE  182 (443)
Q Consensus       106 ~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  182 (443)
                      .++.|+.|++.++.+..   |..+-.+..|+.|.+++|.+..+|..++++++||.|.+..| ..-.+|.. ++.+..|++
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lre  177 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRE  177 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHH
Confidence            99999999999999877   67888899999999999999999999999999999999994 45568887 799999999


Q ss_pred             EEccCCCCCcccc
Q 013440          183 LYMGNGFSGWEKV  195 (443)
Q Consensus       183 L~l~~~~~~~~~~  195 (443)
                      |.+.+|.....++
T Consensus       178 lhiqgnrl~vlpp  190 (264)
T KOG0617|consen  178 LHIQGNRLTVLPP  190 (264)
T ss_pred             HhcccceeeecCh
Confidence            9999998765543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.56  E-value=7.5e-14  Score=141.97  Aligned_cols=256  Identities=20%  Similarity=0.128  Sum_probs=139.4

Q ss_pred             CCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCc
Q 013440           85 EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW  164 (443)
Q Consensus        85 ~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~  164 (443)
                      ..-..|+++.+.++.+|+.+.  .+|+.|++.+|.++.++.  ..++|++|++++|.++.+|..   .++|+.|++.+|.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence            345567777777777766554  367777777776665221  246677777777777666542   3466677776643


Q ss_pred             cccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCC
Q 013440          165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDG  244 (443)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~  244 (443)
                       +..+|.    -..+|+.|++++|.+...+.            ..++|+.|++++|.+..+|.  ....|+.|.+..+..
T Consensus       274 -L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~------------~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        274 -LTHLPA----LPSGLCKLWIFGNQLTSLPV------------LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQL  334 (788)
T ss_pred             -hhhhhh----chhhcCEEECcCCccccccc------------cccccceeECCCCccccCCC--CcccccccccccCcc
Confidence             333432    12456667776665543221            23467777777776666554  223455555533332


Q ss_pred             CCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCc
Q 013440          245 PEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEI  324 (443)
Q Consensus       245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  324 (443)
                      ....     ....+|+.|++++|.+.. ++  .    ..++|+.|++.+|... .++.      ...+|+.|+++++ .+
T Consensus       335 ~~LP-----~lp~~Lq~LdLS~N~Ls~-LP--~----lp~~L~~L~Ls~N~L~-~LP~------l~~~L~~LdLs~N-~L  394 (788)
T PRK15387        335 TSLP-----TLPSGLQELSVSDNQLAS-LP--T----LPSELYKLWAYNNRLT-SLPA------LPSGLKELIVSGN-RL  394 (788)
T ss_pred             cccc-----ccccccceEecCCCccCC-CC--C----CCcccceehhhccccc-cCcc------cccccceEEecCC-cc
Confidence            2211     122466777777765532 21  1    1145666666655432 2322      2245777777766 34


Q ss_pred             eeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440          325 LHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC  404 (443)
Q Consensus       325 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C  404 (443)
                      +.++        ...+.|+.|+++++ .++.++..       ..+|+.|++++ +.++.+|.  .+.+++.|+.|++.++
T Consensus       395 t~LP--------~l~s~L~~LdLS~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~LP~--sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        395 TSLP--------VLPSELKELMVSGN-RLTSLPML-------PSGLLSLSVYR-NQLTRLPE--SLIHLSSETTVNLEGN  455 (788)
T ss_pred             cCCC--------CcccCCCEEEccCC-cCCCCCcc-------hhhhhhhhhcc-CcccccCh--HHhhccCCCeEECCCC
Confidence            3332        12356777777764 45544421       34566667665 45666652  2455667777777666


Q ss_pred             c
Q 013440          405 D  405 (443)
Q Consensus       405 ~  405 (443)
                      +
T Consensus       456 ~  456 (788)
T PRK15387        456 P  456 (788)
T ss_pred             C
Confidence            4

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.54  E-value=2e-13  Score=138.89  Aligned_cols=255  Identities=16%  Similarity=0.096  Sum_probs=157.9

Q ss_pred             CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~  116 (443)
                      .+-..|+++++.+..+|.... ++|+.|++.+|.+  ..+|.    ..++|++|++++|.++.+|..   .++|++|+++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L--t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcC--CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence            445577788777777776442 4678888887775  44553    257788888888887777643   3577788888


Q ss_pred             CCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccccc
Q 013440          117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE  196 (443)
Q Consensus       117 ~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (443)
                      +|.+..++.  -..+|+.|++++|+++.+|..   .++|+.|++++|.+ ..+|..    ..+|+.|++++|.+...+. 
T Consensus       271 ~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls~N~L~~LP~-  339 (788)
T PRK15387        271 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL----PSELCKLWAYNNQLTSLPT-  339 (788)
T ss_pred             CCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC----cccccccccccCccccccc-
Confidence            877766221  124577778888877777652   46778888877543 344431    2346677777776643221 


Q ss_pred             CCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccccc
Q 013440          197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN  276 (443)
Q Consensus       197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  276 (443)
                                 ...+|+.|++++|.+..+|.  ...+|+.|.+..+......     ....+|+.|++++|.+.. ++. 
T Consensus       340 -----------lp~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~~LP-----~l~~~L~~LdLs~N~Lt~-LP~-  399 (788)
T PRK15387        340 -----------LPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLP-----ALPSGLKELIVSGNRLTS-LPV-  399 (788)
T ss_pred             -----------cccccceEecCCCccCCCCC--CCcccceehhhccccccCc-----ccccccceEEecCCcccC-CCC-
Confidence                       11367788888887777765  2356666666443332211     123467788888876642 221 


Q ss_pred             chhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccc
Q 013440          277 DGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL  350 (443)
Q Consensus       277 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  350 (443)
                           ..++|+.|++++|... .++.      ...+|+.|+++++ .++.++.     ....++.|+.|+++++
T Consensus       400 -----l~s~L~~LdLS~N~Ls-sIP~------l~~~L~~L~Ls~N-qLt~LP~-----sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        400 -----LPSELKELMVSGNRLT-SLPM------LPSGLLSLSVYRN-QLTRLPE-----SLIHLSSETTVNLEGN  455 (788)
T ss_pred             -----cccCCCEEEccCCcCC-CCCc------chhhhhhhhhccC-cccccCh-----HHhhccCCCeEECCCC
Confidence                 1257888888877543 3333      2346777888776 4555541     3456778888888775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.47  E-value=5.5e-13  Score=136.42  Aligned_cols=250  Identities=14%  Similarity=0.123  Sum_probs=172.1

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEE
Q 013440           34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL  113 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L  113 (443)
                      +...+...|++.+.++..+|..+ .+.|+.|++++|.+  ..+|..++   .+|++|++++|.++.+|..+.  .+|+.|
T Consensus       175 Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L  246 (754)
T PRK15370        175 CLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEM  246 (754)
T ss_pred             hcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEE
Confidence            34456788999988888887644 35789999999985  67777653   589999999999988887653  479999


Q ss_pred             EecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       114 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      ++++|.+.. |..+.  .+|+.|++++|.++.+|..+.  ++|+.|++++|.+ ..+|.. +  .++|+.|++++|.+..
T Consensus       247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-L--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-c--hhhHHHHHhcCCcccc
Confidence            999998877 44433  579999999999888887654  5899999998654 456643 2  2468888888887754


Q ss_pred             ccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440          193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI  272 (443)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (443)
                      .+.         .  ..++|+.|++.+|.+..+|..+ .++|+.|++..+......  .  ...+.|+.|++++|.+.. 
T Consensus       319 LP~---------~--l~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP--~--~lp~~L~~LdLs~N~Lt~-  381 (754)
T PRK15370        319 LPE---------T--LPPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLP--E--TLPPTITTLDVSRNALTN-  381 (754)
T ss_pred             CCc---------c--ccccceeccccCCccccCChhh-cCcccEEECCCCCCCcCC--h--hhcCCcCEEECCCCcCCC-
Confidence            321         1  1257889999999888887653 468888888655443221  1  123678888888876642 


Q ss_pred             ccccchhhHhhcccceeeccccCCccccccccc-cCCCCCCccEEEEeccc
Q 013440          273 LQENDGTKMLLQRTEDLWLETLEGVQSVVHELD-DGEGFPRLKRLLVTDCS  322 (443)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~  322 (443)
                      +  +..+.   ..|+.|++++|... .++..+. ....++++..|++.+++
T Consensus       382 L--P~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        382 L--PENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             C--CHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence            2  22222   46888888876543 3332211 01245778888888774

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.42  E-value=6.8e-13  Score=135.76  Aligned_cols=228  Identities=15%  Similarity=0.169  Sum_probs=168.8

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~  114 (443)
                      .++.++.|++.+|.+..+|... .++|+.|++++|.+  ..+|..+   ...|+.|++++|.+..+|..+.  .+|++|+
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~  268 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD  268 (754)
T ss_pred             cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence            4678999999999999888755 36899999999986  6777765   3579999999999999987764  5899999


Q ss_pred             ecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcc
Q 013440          115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (443)
Q Consensus       115 l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (443)
                      +++|.+.. |..+.  .+|+.|++++|.++.+|..+.  ++|+.|++++|.+ ..+|..   -.++|+.|++++|.+...
T Consensus       269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~---l~~sL~~L~Ls~N~Lt~L  340 (754)
T PRK15370        269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL-TALPET---LPPGLKTLEAGENALTSL  340 (754)
T ss_pred             CcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc-ccCCcc---ccccceeccccCCccccC
Confidence            99999887 44332  589999999999998886553  4788999998654 456643   236899999999877543


Q ss_pred             cccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL  273 (443)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (443)
                      +         ..+  .++|+.|++++|.+..+|..+ .+.|+.|++..+......  .  .....|+.|++++|.+. .+
T Consensus       341 P---------~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP--~--~l~~sL~~LdLs~N~L~-~L  403 (754)
T PRK15370        341 P---------ASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLP--E--NLPAALQIMQASRNNLV-RL  403 (754)
T ss_pred             C---------hhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCC--H--hHHHHHHHHhhccCCcc-cC
Confidence            3         222  368999999999998888653 478999998765544322  1  12246888899998774 22


Q ss_pred             cccchhhHh---hcccceeeccccCCc
Q 013440          274 QENDGTKML---LQRTEDLWLETLEGV  297 (443)
Q Consensus       274 ~~~~~~~~~---~~~L~~L~L~~~~~~  297 (443)
                        +..+..+   .+++..+++.+|+..
T Consensus       404 --P~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        404 --PESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             --chhHHHHhhcCCCccEEEeeCCCcc
Confidence              2222222   367788999887754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.35  E-value=4.3e-13  Score=126.49  Aligned_cols=83  Identities=25%  Similarity=0.240  Sum_probs=35.8

Q ss_pred             hcCCCCCEEEcCCCcccc-ccccccCCC---CCcEEEecCCCCCC------cccccCC-CCCCEEEcCCCCCC-----CC
Q 013440           82 EGMEGLKVLQFPGIGSSS-LPSSLGRLI---NLQTLCLDWCELAD------IAAIGQL-KKLEILSLAYSNIN-----QL  145 (443)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~-~p~~l~~l~---~L~~L~l~~~~l~~------~~~~~~l-~~L~~L~l~~~~~~-----~l  145 (443)
                      ..+.+|+.|++++|.+.. .+..+..+.   +|++|++++|.+.+      ...+..+ ++|+.|++++|.++     .+
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            345555555555555432 222222222   25555555555442      1223333 45555555555444     12


Q ss_pred             chhhcCCCCCCEEeccCCc
Q 013440          146 PVEIGQLTRLQLLDLSNCW  164 (443)
Q Consensus       146 p~~~~~l~~L~~L~l~~~~  164 (443)
                      +..+..+++|++|++++|.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         158 AKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHhCCCcCEEECcCCC
Confidence            2233344445555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.33  E-value=1.7e-12  Score=135.01  Aligned_cols=315  Identities=18%  Similarity=0.192  Sum_probs=182.9

Q ss_pred             hhhhhccCCCCeEEeCCCCC--CCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc
Q 013440           29 KKMEETIQKDPIAISLPHRD--IQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL  104 (443)
Q Consensus        29 ~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l  104 (443)
                      ........+++++|-+..+.  +..++.  +..++.|++|++++|.. ...+|..+ +++-+||+|+++++.+..+|..+
T Consensus       537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l  614 (889)
T KOG4658|consen  537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSI-GELVHLRYLDLSDTGISHLPSGL  614 (889)
T ss_pred             hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHH-hhhhhhhcccccCCCccccchHH
Confidence            33444555689999999886  666666  44899999999999887 78899987 89999999999999999999999


Q ss_pred             cCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCC---CCchhhcCCCCCCEEeccCCccccccchHHhhcCCC
Q 013440          105 GRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN---QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ  179 (443)
Q Consensus       105 ~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  179 (443)
                      ++++.|.+|++..+.-.. + .....+.+|++|.+......   .....+.++.+|+.+.......  .+... +..+..
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~  691 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTR  691 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHH
Confidence            999999999999987433 4 55556999999999876533   1223345666666666543221  11111 223333


Q ss_pred             CcE----EEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcc
Q 013440          180 LEE----LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVK  255 (443)
Q Consensus       180 L~~----L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  255 (443)
                      |+.    +.+..+.         .......+..+.+|+.|.+..+.+.++.... ......+.                .
T Consensus       692 L~~~~~~l~~~~~~---------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~-~~~~~~~~----------------~  745 (889)
T KOG4658|consen  692 LRSLLQSLSIEGCS---------KRTLISSLGSLGNLEELSILDCGISEIVIEW-EESLIVLL----------------C  745 (889)
T ss_pred             HHHHhHhhhhcccc---------cceeecccccccCcceEEEEcCCCchhhccc-ccccchhh----------------h
Confidence            332    2221111         1123366788999999999988875433221 00000000                0


Q ss_pred             cccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccc
Q 013440          256 SEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVR  335 (443)
Q Consensus       256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  335 (443)
                      ++++..+.+..+..   ...+.|.. ..++|+.|.+..|....++.....   .+..++.+.+..+ .+...   .....
T Consensus       746 f~~l~~~~~~~~~~---~r~l~~~~-f~~~L~~l~l~~~~~~e~~i~~~k---~~~~l~~~i~~f~-~~~~l---~~~~~  814 (889)
T KOG4658|consen  746 FPNLSKVSILNCHM---LRDLTWLL-FAPHLTSLSLVSCRLLEDIIPKLK---ALLELKELILPFN-KLEGL---RMLCS  814 (889)
T ss_pred             HHHHHHHHhhcccc---ccccchhh-ccCcccEEEEecccccccCCCHHH---HhhhcccEEeccc-ccccc---eeeec
Confidence            11222221222111   11111111 116666666666666555433222   2333332222211 11100   01123


Q ss_pred             cCccCcccceeccccccccccccccccccccccccceeeeccC-cCcccccC
Q 013440          336 CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC-RKLKYLFS  386 (443)
Q Consensus       336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c-~~l~~~~~  386 (443)
                      .+.||++..+.+... .++++.....++.+.+|.+.++.+.+| +.+...|.
T Consensus       815 l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~  865 (889)
T KOG4658|consen  815 LGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPD  865 (889)
T ss_pred             CCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCC
Confidence            444555555555442 255554444455677899999999997 77777653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.31  E-value=8.3e-13  Score=124.56  Aligned_cols=11  Identities=18%  Similarity=-0.025  Sum_probs=6.3

Q ss_pred             CCccEEEEecc
Q 013440          311 PRLKRLLVTDC  321 (443)
Q Consensus       311 ~~L~~L~l~~~  321 (443)
                      +.|++|++.+|
T Consensus       250 ~~L~~L~l~~n  260 (319)
T cd00116         250 ISLLTLSLSCN  260 (319)
T ss_pred             CCceEEEccCC
Confidence            45566666555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=8.3e-14  Score=126.01  Aligned_cols=284  Identities=18%  Similarity=0.191  Sum_probs=171.9

Q ss_pred             CCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCcEEEecC-CCCCC-c-
Q 013440           48 DIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQTLCLDW-CELAD-I-  123 (443)
Q Consensus        48 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~~L~l~~-~~l~~-~-  123 (443)
                      ++.++|... .+....+.+..|.+  ..+|+..|+.+++||+||++.|.|+. -|..|.+++.|..|-+.+ |+|.+ + 
T Consensus        57 GL~eVP~~L-P~~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   57 GLTEVPANL-PPETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             CcccCcccC-CCcceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            344444322 23456778888884  88888888999999999999999987 467888888887777666 77888 4 


Q ss_pred             ccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC------Cccccc
Q 013440          124 AAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS------GWEKVE  196 (443)
Q Consensus       124 ~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~  196 (443)
                      ..|+++..|+.|.+.-|++. ..+..+..+++|..|.++. +....++...+..+.+++.+.+..|..      .|....
T Consensus       134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~  212 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD  212 (498)
T ss_pred             hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence            67788888888888888887 4445688888888888888 455666665577788888887766542      111110


Q ss_pred             CCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEE--EEEecCCCCCCC-CchhcccccceeEEEcCccccccc
Q 013440          197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRY--KIRIGDGPEDEF-DPLLVKSEASRLMMLKGIKKVSIL  273 (443)
Q Consensus       197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l--~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~  273 (443)
                        ......+++...-.....+.+..+..++...+...++.+  .......++... ..-+..+++|+.+++++|.+... 
T Consensus       213 --~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i-  289 (498)
T KOG4237|consen  213 --LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI-  289 (498)
T ss_pred             --HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh-
Confidence              000012223333333333333333333333222223332  111111122111 12256788899999998877432 


Q ss_pred             cccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440          274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM  348 (443)
Q Consensus       274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  348 (443)
                      . ..++... ..++.|.|..+..-..-..++.   ++..|+.|+|+++ +++.+.    +......-.|.+|.+.
T Consensus       290 ~-~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~---~ls~L~tL~L~~N-~it~~~----~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  290 E-DGAFEGA-AELQELYLTRNKLEFVSSGMFQ---GLSGLKTLSLYDN-QITTVA----PGAFQTLFSLSTLNLL  354 (498)
T ss_pred             h-hhhhcch-hhhhhhhcCcchHHHHHHHhhh---ccccceeeeecCC-eeEEEe----cccccccceeeeeehc
Confidence            2 3455554 7888888887765443333343   7888999999988 444432    1122333445555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.24  E-value=8.4e-13  Score=119.59  Aligned_cols=250  Identities=16%  Similarity=0.150  Sum_probs=165.6

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCC-Cccccccc-cccCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLPS-SLGRLIN  109 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~p~-~l~~l~~  109 (443)
                      ..+.....+.+..|+++.+|+..  .+++||.|+++.|.+  ..+.+..|.++..|..|.+.+ |.|+.+|+ .|+++..
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            35677788999999999999766  899999999999986  555555679999998888777 88998884 4788999


Q ss_pred             CcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccc--cch---------HHhh
Q 013440          110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAP---------NVIS  175 (443)
Q Consensus       110 L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~---------~~l~  175 (443)
                      |+-|.+..|.+.-  ...+..+++|..|.+.+|.+..++. .+..+.+++++.+..|.+..+  +|.         ..++
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            9989888888765  4778889999999999988887766 477788888887766553222  000         0011


Q ss_pred             cCCCCcEEEc-------------------------cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-
Q 013440          176 KLSQLEELYM-------------------------GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-  229 (443)
Q Consensus       176 ~l~~L~~L~l-------------------------~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-  229 (443)
                      ...-..-..+                         +.+......       -...++++++|++|++++|+++.+.+.. 
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c-------P~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC-------PAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC-------hHHHHhhcccceEeccCCCccchhhhhhh
Confidence            1100000000                         011111111       1145788899999999999887776654 


Q ss_pred             -ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440          230 -VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG  296 (443)
Q Consensus       230 -~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (443)
                       ....++.+.+..+...... ...+..+..|+.|.+++|++..-.  +..+... ..|.+|.+-.++.
T Consensus       295 e~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~-~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVA--PGAFQTL-FSLSTLNLLSNPF  358 (498)
T ss_pred             cchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEe--ccccccc-ceeeeeehccCcc
Confidence             3366777776433322111 122467788888999998774432  2223333 5688888877654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.19  E-value=9.4e-13  Score=120.17  Aligned_cols=308  Identities=17%  Similarity=0.065  Sum_probs=148.7

Q ss_pred             CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcc-cc--ccccccCCCCCcEEEecCCC-CCC--cc-cccCCCC
Q 013440           59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SS--LPSSLGRLINLQTLCLDWCE-LAD--IA-AIGQLKK  131 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~--~p~~l~~l~~L~~L~l~~~~-l~~--~~-~~~~l~~  131 (443)
                      -.|+.|.++|+.-........+...++++..|++.+|.. +.  +-+.-..|++|+++++..|. +++  .. ....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            355666666655422222333345566666666666652 21  22222456667777766655 444  23 3345677


Q ss_pred             CCEEEcCCC-CCC--CCchhhcCCCCCCEEeccCCccccccc-hHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440          132 LEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNCWWLEVIA-PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE  207 (443)
Q Consensus       132 L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~  207 (443)
                      |++++++.| .++  .+..-...++.+..+...||.....-. ..+-..+..+.++++..|......      .....-.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~------~~~~i~~  291 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE------DLWLIAC  291 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch------HHHHHhh
Confidence            777777766 444  233334455556666666653222111 111233444555665555322111      1111223


Q ss_pred             CCCCCCEEEeecCCC-CCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhccc
Q 013440          208 RLTELTTLEIEVPDA-EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT  286 (443)
Q Consensus       208 ~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  286 (443)
                      ++..|++|+.+++.. +..+.+                      .....+.+|+.+.+++|.......+. .++...+.|
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~----------------------aLg~~~~~L~~l~l~~c~~fsd~~ft-~l~rn~~~L  348 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLW----------------------ALGQHCHNLQVLELSGCQQFSDRGFT-MLGRNCPHL  348 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHH----------------------HHhcCCCceEEEeccccchhhhhhhh-hhhcCChhh
Confidence            344555555543322 111110                      11134566666666665443333321 233344667


Q ss_pred             ceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccc
Q 013440          287 EDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQS  366 (443)
Q Consensus       287 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  366 (443)
                      +.+++..+....+...... ...|+.|++|.++.|..+++-.-............|+.+.+.+|+.+++-....   ...
T Consensus       349 e~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~---l~~  424 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH---LSI  424 (483)
T ss_pred             hhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH---Hhh
Confidence            7777776665544322222 446777777777777655532100000122344556666666666555443221   334


Q ss_pred             ccccceeeeccCcCcccccChhhhhccccccee
Q 013440          367 FSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV  399 (443)
Q Consensus       367 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L  399 (443)
                      +++|+.+++.+|..++.-+...+.+++|+++..
T Consensus       425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             CcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            566666666666666666555555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=3e-11  Score=101.26  Aligned_cols=108  Identities=22%  Similarity=0.270  Sum_probs=25.0

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc-cCCCC
Q 013440           32 EETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLIN  109 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l-~~l~~  109 (443)
                      +..++.+++.|++.++.+..+.... .+.+|+.|++++|..  ..+..  +..++.|+.|++++|.++.+++.+ ..+++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            3344445566666666665554443 355555566655553  33332  345555555555555555554333 23555


Q ss_pred             CcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCC
Q 013440          110 LQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNIN  143 (443)
Q Consensus       110 L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~  143 (443)
                      |++|++++|.+.+   +..+..+++|++|++.+|.++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5555555555444   233444444444444444433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.16  E-value=9.5e-13  Score=120.13  Aligned_cols=290  Identities=16%  Similarity=0.153  Sum_probs=189.8

Q ss_pred             CCcEEEecCCCCCC---c-ccccCCCCCCEEEcCCC-CCC--CCchhhcCCCCCCEEeccCCccccccc-hHHhhcCCCC
Q 013440          109 NLQTLCLDWCELAD---I-AAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNCWWLEVIA-PNVISKLSQL  180 (443)
Q Consensus       109 ~L~~L~l~~~~l~~---~-~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L  180 (443)
                      .|+.|.+++|.-..   . ....+++++++|.+.+| +++  .+-..-..+++|+++++..|...++.. ......+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57888888877322   2 34456888888888888 565  233334568888888888876655544 2345668889


Q ss_pred             cEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc----ccccCcEEEEEecCC-CCCCCCchhcc
Q 013440          181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF----VSVELQRYKIRIGDG-PEDEFDPLLVK  255 (443)
Q Consensus       181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~l~l~~~~~-~~~~~~~~~~~  255 (443)
                      .++++++|.....      +..-.-..++++++.+.+.++.-..+-...    .+..+.++++..+.. .+......-..
T Consensus       219 ~~lNlSwc~qi~~------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  219 KYLNLSWCPQISG------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HHhhhccCchhhc------CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            9999888754322      112233455666666655554432211110    223344444322221 11111111135


Q ss_pred             cccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccc
Q 013440          256 SEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVR  335 (443)
Q Consensus       256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  335 (443)
                      +..|+.++.+++....... .+.+++-.++|+.+-+++|....+...... ...++.|+.+++..|..+.   +......
T Consensus       293 c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~---d~tL~sl  367 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLIT---DGTLASL  367 (483)
T ss_pred             hhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceeh---hhhHhhh
Confidence            7788888888865533322 334555558999999999998888777766 7789999999999997554   3333445


Q ss_pred             cCccCcccceeccccccccccccccccc-cccccccceeeeccCcCcccccChhhhhcccccceeeeccCcccccc
Q 013440          336 CEVFPLLEALSLMFLTNLETICYSQLRE-DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI  410 (443)
Q Consensus       336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~  410 (443)
                      ...+|.|+.|.+++|..+++-+...+.. ..++..|+.+++.+||.+++.. ......++.|+.+++.+|..+.+-
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-Le~l~~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-LEHLSICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-HHHHhhCcccceeeeechhhhhhh
Confidence            5688999999999998887763322220 2567889999999999999873 466789999999999999887643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=8.3e-11  Score=98.56  Aligned_cols=104  Identities=22%  Similarity=0.257  Sum_probs=20.8

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCc-ccc-cCCCCCCE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAI-GQLKKLEI  134 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~-~~~-~~l~~L~~  134 (443)
                      ++.+++.|++.+|.+  ..+. .+...+.+|+.|++++|.++.+. .+..+++|++|++++|.++++ ..+ ..+++|++
T Consensus        17 n~~~~~~L~L~~n~I--~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQI--STIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc--cccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            444455555555543  2221 11113444555555555544442 234444455555555544442 222 23444555


Q ss_pred             EEcCCCCCCCCc--hhhcCCCCCCEEeccCCc
Q 013440          135 LSLAYSNINQLP--VEIGQLTRLQLLDLSNCW  164 (443)
Q Consensus       135 L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~  164 (443)
                      |++++|++..+.  ..+..+++|+.|++.+|+
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            555444443221  223344444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=2.5e-11  Score=115.11  Aligned_cols=182  Identities=24%  Similarity=0.341  Sum_probs=153.8

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440           34 TIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  112 (443)
                      ..+......+++.|.+.++|... .+-.|..+.++.|.+  ..+|..+ .++..|.+|+++.|.+..+|..+..|+ |+.
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKV  147 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence            45566667888888888888766 778888999988885  7788876 689999999999999999998887776 999


Q ss_pred             EEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          113 LCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       113 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      |.+++|++.. +..++.+..|..||.+.|.+..+|..++.+.+|+.|.+..| ....+|.. +..++ |..|+++.|.+.
T Consensus       148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             EEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCCc-eeeeecccCcee
Confidence            9999999988 88889999999999999999999999999999999999994 55667766 55554 999999999876


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcccc
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS  231 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  231 (443)
                      ..+         .++.+|+.|++|.|.+|....-|..++.
T Consensus       225 ~iP---------v~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  225 YLP---------VDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             ecc---------hhhhhhhhheeeeeccCCCCCChHHHHh
Confidence            543         7789999999999999999887777644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2e-10  Score=105.80  Aligned_cols=201  Identities=14%  Similarity=0.055  Sum_probs=103.2

Q ss_pred             CCCCCcEEEcccCCCCCccCcH-HHHhcCCCCCEEEcCCCcccc---ccccccCCCCCcEEEecCCCCCCc---ccccCC
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELADI---AAIGQL  129 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~---~p~~l~~l~~L~~L~l~~~~l~~~---~~~~~l  129 (443)
                      ++.+|+...+.++..  ...+. .....|++++.||++.|-+..   +.....++++|+.|+++.|.+..+   ..-..+
T Consensus       119 n~kkL~~IsLdn~~V--~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRV--EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccc--cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            556666666666553  22221 233556666666666665543   334445666666666666665441   112245


Q ss_pred             CCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440          130 KKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE  207 (443)
Q Consensus       130 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~  207 (443)
                      .+|+.|.++.|.++  .+......+|+|..|++..|.....-... ..-++.|++|++++|.+......       ...+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~-------~~~~  268 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQG-------YKVG  268 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccc-------cccc
Confidence            66666666666665  34344456666666666665311111111 23345566666666655444321       3455


Q ss_pred             CCCCCCEEEeecCCCCCC--CCc------cccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440          208 RLTELTTLEIEVPDAEIL--PPD------FVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (443)
Q Consensus       208 ~l~~L~~L~l~~~~~~~~--~~~------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (443)
                      .++.|+.|+++.+.+..+  |+.      ..+++|+.|.+..+.+.+|.....+..+++|+.|.+..|
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            666666666666655332  111      123555555555444444443333444444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=2.2e-10  Score=100.60  Aligned_cols=184  Identities=14%  Similarity=0.089  Sum_probs=135.7

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCC----------------------ccCcHHHHhcCCCCCEE
Q 013440           34 TIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGP----------------------MQVSDHFFEGMEGLKVL   90 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~----------------------~~~~~~~~~~l~~L~~L   90 (443)
                      ..+.++..+.++.+.-+.+.+.. .-|.|+++.+......+                      +.+-.. ...+..|..+
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~-~dTWq~Ltel  289 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVS-ADTWQELTEL  289 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEe-cchHhhhhhc
Confidence            34456666666666554444433 44566666665432100                      001111 2346789999


Q ss_pred             EcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccc
Q 013440           91 QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIA  170 (443)
Q Consensus        91 ~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~  170 (443)
                      |+++|.|+.+.+++.-.+.++.|+++.|.+..+..+..+++|++||+++|.++.+-.+-.++-+.+.|.+++ +.+.++.
T Consensus       290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS  368 (490)
T KOG1259|consen  290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLS  368 (490)
T ss_pred             cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhh
Confidence            999999999988899999999999999998887778899999999999998887765556777888999998 4455554


Q ss_pred             hHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc
Q 013440          171 PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (443)
Q Consensus       171 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (443)
                      .  ++++-+|..|++.+|++.....       ...+++++-|+.+.+.+|++..++..
T Consensus       369 G--L~KLYSLvnLDl~~N~Ie~lde-------V~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  369 G--LRKLYSLVNLDLSSNQIEELDE-------VNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             h--hHhhhhheeccccccchhhHHH-------hcccccccHHHHHhhcCCCccccchH
Confidence            3  7888899999999998765442       26789999999999999998877764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.6e-11  Score=103.69  Aligned_cols=190  Identities=18%  Similarity=0.078  Sum_probs=126.2

Q ss_pred             CCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC-CCCCCccccc
Q 013440          154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA-EILPPDFVSV  232 (443)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~  232 (443)
                      .||+|+++...+...--..++..|++|+.+.+.++..+....        ..++.-.+|+.|+++.+.. ++....    
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~--------~~iAkN~~L~~lnlsm~sG~t~n~~~----  253 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV--------NTIAKNSNLVRLNLSMCSGFTENALQ----  253 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH--------HHHhccccceeeccccccccchhHHH----
Confidence            478888877544444444557788888888888877766554        6777777888888875443 222211    


Q ss_pred             cCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCc---cccccccccCCC
Q 013440          233 ELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV---QSVVHELDDGEG  309 (443)
Q Consensus       233 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~~~~~~~~~~~  309 (443)
                                        ..+.+|+.|..|++++|...... ....+...-++|+.|+|+++...   ..+...   ..+
T Consensus       254 ------------------ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL---~~r  311 (419)
T KOG2120|consen  254 ------------------LLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTL---VRR  311 (419)
T ss_pred             ------------------HHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH---HHh
Confidence                              22456777777777776654433 12223334478889999887532   222222   348


Q ss_pred             CCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440          310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL  384 (443)
Q Consensus       310 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~  384 (443)
                      ||+|.+|+|++|-.++.    ..+.....|+.|++|.++.|-.+   +...+.+.++.|+|.+|++.+|-.-+..
T Consensus       312 cp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~vsdt~m  379 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCVSDTTM  379 (419)
T ss_pred             CCceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEeccccCchHH
Confidence            99999999999976653    23346678999999999999754   3333455788999999999998665443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=2.9e-10  Score=104.68  Aligned_cols=138  Identities=17%  Similarity=0.147  Sum_probs=78.3

Q ss_pred             hcCCCCCEEEcCCCcccccc--ccccCCCCCcEEEecCCCCCC----cccccCCCCCCEEEcCCCCCCCCchh--hcCCC
Q 013440           82 EGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD----IAAIGQLKKLEILSLAYSNINQLPVE--IGQLT  153 (443)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~l~~~~l~~----~~~~~~l~~L~~L~l~~~~~~~lp~~--~~~l~  153 (443)
                      +++.+|+...+..+.+...+  .....|++++.|++++|-+..    ...+..+++|+.|+++.|++.-....  -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            45677777777777766555  355667777777777776555    24455677777777777755422111  12455


Q ss_pred             CCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440          154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (443)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (443)
                      .|+.|.+++|.+...-...++..+++|..|.+..|.......        .....++.|+.|+|++|.+..++.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~--------~~~~i~~~L~~LdLs~N~li~~~~  263 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA--------TSTKILQTLQELDLSNNNLIDFDQ  263 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec--------chhhhhhHHhhccccCCccccccc
Confidence            666666666655443333345556666666666653111110        122334556666666666655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=3.1e-10  Score=107.82  Aligned_cols=190  Identities=21%  Similarity=0.251  Sum_probs=151.8

Q ss_pred             EEeCCCCCCCCCCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecC
Q 013440           41 AISLPHRDIQELPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW  117 (443)
Q Consensus        41 ~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~  117 (443)
                      +|.+++..++.+|...   .+.--...+++.|.+  ..+|..+ ..|..|..+.+..|.+..+|..+..+..|.+++++.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhcccccc--ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence            4566666666666433   444455678888885  7778775 568888999999999999999999999999999999


Q ss_pred             CCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccccc
Q 013440          118 CELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE  196 (443)
Q Consensus       118 ~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (443)
                      |.++. |..+..|+ |+.|.+++|+++.+|..++.++.|..|+++.|. +..+|.. ++.+.+|+.|.+..|.+...+  
T Consensus       131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~lp--  205 (722)
T KOG0532|consen  131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLEDLP--  205 (722)
T ss_pred             chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhhCC--
Confidence            99888 67776666 999999999999999999999999999999855 4556665 788999999999988776544  


Q ss_pred             CCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCC
Q 013440          197 GGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPE  246 (443)
Q Consensus       197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~  246 (443)
                             .++..+ .|.+|++++|++..+|..+ .+.+|+.+.+..++..+
T Consensus       206 -------~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  206 -------EELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             -------HHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence                   566666 4899999999999999887 56888888885554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.73  E-value=1.4e-08  Score=98.71  Aligned_cols=175  Identities=25%  Similarity=0.286  Sum_probs=107.5

Q ss_pred             hcCCCCCEEEcCCCccccccccccCCC-CCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEe
Q 013440           82 EGMEGLKVLQFPGIGSSSLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD  159 (443)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~~p~~l~~l~-~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~  159 (443)
                      ..+..+..|++.++.++.++....... +|+.|+++++.+.. +..++.+++|+.|++++|++..+|...+..++|+.|+
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            345667777777777777766666663 77777777777666 3566777777777777777777766666777777777


Q ss_pred             ccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEE
Q 013440          160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYK  238 (443)
Q Consensus       160 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~  238 (443)
                      +++ +.+..+|.. +.....|+++.++.|....         .+..+..+.++..+.+..|....++... ..+.++.++
T Consensus       193 ls~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~~---------~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~  261 (394)
T COG4886         193 LSG-NKISDLPPE-IELLSALEELDLSNNSIIE---------LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD  261 (394)
T ss_pred             ccC-CccccCchh-hhhhhhhhhhhhcCCccee---------cchhhhhcccccccccCCceeeeccchhccccccceec
Confidence            777 444555543 2344557777776663211         1144555666666666666665544333 335566666


Q ss_pred             EEecCCCCCCCCchhcccccceeEEEcCcccc
Q 013440          239 IRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV  270 (443)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (443)
                      +......+...   +....+++.+++.++...
T Consensus       262 ~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         262 LSNNQISSISS---LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccccccccccc---ccccCccCEEeccCcccc
Confidence            65444444331   466677777777776553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=4.4e-10  Score=98.61  Aligned_cols=182  Identities=20%  Similarity=0.107  Sum_probs=108.4

Q ss_pred             CCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440          130 KKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE  207 (443)
Q Consensus       130 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~  207 (443)
                      ..|++|||++..++  .+...+.++.+|+.|.+.++...+.+... +.+-.+|+.++++.+.-...      ++..--+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~------n~~~ll~~  257 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE------NALQLLLS  257 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch------hHHHHHHH
Confidence            35889999999887  45566788999999999997777777665 77888999999988643222      22334568


Q ss_pred             CCCCCCEEEeecCCCCC-CCCcc---ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhh
Q 013440          208 RLTELTTLEIEVPDAEI-LPPDF---VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLL  283 (443)
Q Consensus       208 ~l~~L~~L~l~~~~~~~-~~~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  283 (443)
                      .++.|..|+++|+.... ....+   ..++|+.|++                         +|+...-...-...+..-+
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl-------------------------sG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL-------------------------SGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh-------------------------hhhHhhhhhhHHHHHHHhC
Confidence            89999999999987632 22111   2255555555                         3322110000011122233


Q ss_pred             cccceeeccccCCcccc-ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccc
Q 013440          284 QRTEDLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL  350 (443)
Q Consensus       284 ~~L~~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  350 (443)
                      |++..|+|+.+..+++- ...+.   .|+.|++|.++.|+.+    ...........|.|.+|++.+|
T Consensus       313 p~l~~LDLSD~v~l~~~~~~~~~---kf~~L~~lSlsRCY~i----~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCFQEFF---KFNYLQHLSLSRCYDI----IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CceeeeccccccccCchHHHHHH---hcchheeeehhhhcCC----ChHHeeeeccCcceEEEEeccc
Confidence            66666666665554432 12222   5666666666666533    1222334455666666666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.72  E-value=1.7e-08  Score=98.18  Aligned_cols=188  Identities=26%  Similarity=0.303  Sum_probs=136.0

Q ss_pred             EEeCCCCCC-CCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCC-CCCEEEcCCCccccccccccCCCCCcEEEecCC
Q 013440           41 AISLPHRDI-QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME-GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        41 ~L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~  118 (443)
                      .+....+.+ .........+.++.|.+.++..  ..++... ..+. +|+.|+++++.+..+|..++.+++|+.|+++.|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i--~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI--TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccc--ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence            355555555 3333334667788888888885  6666643 3443 889999999988888777888899999999998


Q ss_pred             CCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC
Q 013440          119 ELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG  197 (443)
Q Consensus       119 ~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  197 (443)
                      .+.+ +...+.++.|+.|+++++.+..+|..+..+..|+.+.+++|........  +..+.++..+.+..+.....    
T Consensus       174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~----  247 (394)
T COG4886         174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDL----  247 (394)
T ss_pred             hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeec----
Confidence            8888 4555588888999999998888888777777788888888644443332  56777777777776665432    


Q ss_pred             CCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEec
Q 013440          198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG  242 (443)
Q Consensus       198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~  242 (443)
                           +..++.++++++|+++.|.+..++......+++.+++...
T Consensus       248 -----~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         248 -----PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             -----cchhccccccceeccccccccccccccccCccCEEeccCc
Confidence                 2556778888888888888887777334577888877543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.72  E-value=1.4e-09  Score=95.63  Aligned_cols=128  Identities=21%  Similarity=0.258  Sum_probs=78.1

Q ss_pred             hccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440           33 ETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~  111 (443)
                      ...+.-++.+++++|.++.+.... -.|++|.|++++|..  ..+..  +..+.+|..||+++|.++.+--+-..+.+++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeehh--hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence            334455666677776666665555 456677777777664  33333  3456667777777776655433334556666


Q ss_pred             EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCC--chhhcCCCCCCEEeccCCc
Q 013440          112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCW  164 (443)
Q Consensus       112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~l~~~~  164 (443)
                      +|.+..|.+.+..+++.+.+|..||+++|++..+  ..+++++|-|+++.+.+|+
T Consensus       356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            6777776666666666667777777777666633  2356666666666666644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.52  E-value=1.3e-08  Score=91.39  Aligned_cols=62  Identities=8%  Similarity=-0.047  Sum_probs=28.2

Q ss_pred             CCCCCCEEEeecCCCCCCCCcc------ccccCcEEEEEecCCCCCCC---CchhcccccceeEEEcCccc
Q 013440          208 RLTELTTLEIEVPDAEILPPDF------VSVELQRYKIRIGDGPEDEF---DPLLVKSEASRLMMLKGIKK  269 (443)
Q Consensus       208 ~l~~L~~L~l~~~~~~~~~~~~------~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~  269 (443)
                      .-++|+++....|.....+...      ..+.|+.+++..+.+.....   ...+..|++|+.|++.+|.+
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence            3345555555555544333221      11344444444333322211   12345666666666666554

>PLN03150 hypothetical protein; Provisional

Probab=98.42  E-value=7.5e-07  Score=91.11  Aligned_cols=105  Identities=22%  Similarity=0.281  Sum_probs=78.7

Q ss_pred             CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440          109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (443)
Q Consensus       109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (443)
                      .++.|+++++.+..  +..++.+++|+.|++++|.+. .+|..++++++|+.|++++|.+.+.+|.. ++.+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            36778888888766  577888888888888888777 67777888888888888887777777765 678888888888


Q ss_pred             cCCCCCcccccCCCchhhhhccC-CCCCCEEEeecCCC
Q 013440          186 GNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDA  222 (443)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~  222 (443)
                      ++|.+....+        ..++. ..++..+++.+|..
T Consensus       498 s~N~l~g~iP--------~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSGRVP--------AALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccccCC--------hHHhhccccCceEEecCCcc
Confidence            8887765554        44443 24566777777754

>PLN03150 hypothetical protein; Provisional

Probab=98.40  E-value=1.1e-06  Score=89.96  Aligned_cols=103  Identities=22%  Similarity=0.401  Sum_probs=83.6

Q ss_pred             CCCEEEcCCCcccc-ccccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEecc
Q 013440           86 GLKVLQFPGIGSSS-LPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLS  161 (443)
Q Consensus        86 ~L~~L~l~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~  161 (443)
                      .++.|+++++.+.. +|..++.+++|++|++++|.+..  +..++.+++|+.|++++|.+. .+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37778888888864 78888889999999999988875  567888999999999999887 688888999999999999


Q ss_pred             CCccccccchHHhhc-CCCCcEEEccCCC
Q 013440          162 NCWWLEVIAPNVISK-LSQLEELYMGNGF  189 (443)
Q Consensus       162 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  189 (443)
                      +|.+.+.+|.. +.. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCc
Confidence            98888888876 343 3466778877764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=3.9e-07  Score=62.64  Aligned_cols=57  Identities=23%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCC
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC  118 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~  118 (443)
                      +|+.|++++|..  ..++...|.++++|++|++++|.++.++ ..|..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            344444444442  3444444444444444444444444433 23344444444444444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.38  E-value=1.5e-07  Score=96.13  Aligned_cols=146  Identities=21%  Similarity=0.256  Sum_probs=83.8

Q ss_pred             CCCeEEeCCCCCC--CCCCC-cC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440           37 KDPIAISLPHRDI--QELPE-RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (443)
Q Consensus        37 ~~l~~L~l~~~~~--~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  112 (443)
                      .++++|++.|...  ...+. .. .+|.|++|.+++-.+..++ ...++.++++|+.||+++++++.+ .+++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            4567777766443  22221 11 5677777777775542222 344566777777777777777666 56677777777


Q ss_pred             EEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCch-------hhcCCCCCCEEeccCCccccccchHHhhcCCCCcE
Q 013440          113 LCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPV-------EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE  182 (443)
Q Consensus       113 L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~-------~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  182 (443)
                      |.+.+-.+..   +..+-+|++|++||+++......+.       .-..+|+|+.||.++....+.+-...+..-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            7776666554   4566667777777777663332221       11236677777776644444444333444444544


Q ss_pred             EE
Q 013440          183 LY  184 (443)
Q Consensus       183 L~  184 (443)
                      ..
T Consensus       280 i~  281 (699)
T KOG3665|consen  280 IA  281 (699)
T ss_pred             hh
Confidence            44

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=3.6e-07  Score=62.81  Aligned_cols=58  Identities=29%  Similarity=0.391  Sum_probs=47.6

Q ss_pred             CCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCC
Q 013440           85 EGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNI  142 (443)
Q Consensus        85 ~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~  142 (443)
                      ++|++|++++|.++.+| ..|.++++|++|++++|.+..  +..+.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46888899988888876 467888899999999888877  46788889999999888864

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.29  E-value=2.6e-07  Score=83.30  Aligned_cols=205  Identities=20%  Similarity=0.233  Sum_probs=135.7

Q ss_pred             CCCCeEEeCCCCCC----CCCCC--------cCCCCCCcEEEcccCCCCCccC--cHHHHhcCCCCCEEEcCCCcccc--
Q 013440           36 QKDPIAISLPHRDI----QELPE--------RLQCPNLQLFLLYTEGNGPMQV--SDHFFEGMEGLKVLQFPGIGSSS--   99 (443)
Q Consensus        36 ~~~l~~L~l~~~~~----~~l~~--------~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~--   99 (443)
                      .+.+|..++++-..    .++|.        ...+++|+.|++|.|-+....+  ...++.++..|+.|.+.+|.+..  
T Consensus        57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a  136 (382)
T KOG1909|consen   57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA  136 (382)
T ss_pred             cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence            34677777765332    33332        2267899999999988722222  23455778999999999998652  


Q ss_pred             ---cc---------ccccCCCCCcEEEecCCCCCC------cccccCCCCCCEEEcCCCCCC-----CCchhhcCCCCCC
Q 013440          100 ---LP---------SSLGRLINLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQ  156 (443)
Q Consensus       100 ---~p---------~~l~~l~~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~  156 (443)
                         +.         +.+..=++|+++...+|.+.+      ...++.++.|+.+.+..|.+.     .+...+.++++|+
T Consensus       137 g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le  216 (382)
T KOG1909|consen  137 GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE  216 (382)
T ss_pred             HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence               11         122344689999999998766      166777889999999988765     2344678899999


Q ss_pred             EEeccCCccccccch---HHhhcCCCCcEEEccCCCCCcccccCCCchhhhhc-cCCCCCCEEEeecCCCCCCCCcc---
Q 013440          157 LLDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTLEIEVPDAEILPPDF---  229 (443)
Q Consensus       157 ~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---  229 (443)
                      .|++..|.+......   ..+..+++|+++++++|.+.....    .++...+ ...++|+.|.+.+|.++.-....   
T Consensus       217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga----~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA----IAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             eeecccchhhhHHHHHHHHHhcccchheeecccccccccccH----HHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            999998765543321   225667789999999987765543    1222233 33678999999988874322111   


Q ss_pred             ---ccccCcEEEEEecCC
Q 013440          230 ---VSVELQRYKIRIGDG  244 (443)
Q Consensus       230 ---~~~~L~~l~l~~~~~  244 (443)
                         -.+.|..|.+..+..
T Consensus       293 ~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  293 CMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcchhhHHhcCCcccc
Confidence               237888888865544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=1.2e-08  Score=99.84  Aligned_cols=101  Identities=26%  Similarity=0.307  Sum_probs=50.1

Q ss_pred             CCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCc
Q 013440           86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW  164 (443)
Q Consensus        86 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~  164 (443)
                      .|.+.+.++|.+.-+-.++.-+++|+.|++++|++.+...+.+|++|++|||++|.++.+|.- ...++ |+.|.+.+|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~  243 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA  243 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence            344444555554444444555555666666666655544555566666666666655544432 22222 5555555532


Q ss_pred             cccccchHHhhcCCCCcEEEccCCCC
Q 013440          165 WLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                       .+.+-.  +.++.+|+.|++++|-+
T Consensus       244 -l~tL~g--ie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  244 -LTTLRG--IENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             -HHhhhh--HHhhhhhhccchhHhhh
Confidence             222221  34455555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.11  E-value=2.5e-06  Score=87.29  Aligned_cols=136  Identities=21%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             CCCCCEEEcCCCccc--ccccccc-CCCCCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440           84 MEGLKVLQFPGIGSS--SLPSSLG-RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL  157 (443)
Q Consensus        84 l~~L~~L~l~~~~~~--~~p~~l~-~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~  157 (443)
                      -.+|++|+++|....  ..|..++ .||.|+.|.+.+-.+..   .....++++|..||++++.++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            477888888886532  3454444 37888888888766433   35566788888888888888877 67888888888


Q ss_pred             EeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC
Q 013440          158 LDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (443)
Q Consensus       158 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (443)
                      |.+.+-.+.....-..+-.+++|+.||++.........-  ...-.+.-..+|+|+.|+.+++++
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i--i~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKI--IEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHH--HHHHHHhcccCccccEEecCCcch
Confidence            887764443322211256788888888876543332210  001112234478888888887776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.03  E-value=5.3e-07  Score=88.01  Aligned_cols=128  Identities=25%  Similarity=0.332  Sum_probs=73.9

Q ss_pred             CCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEc
Q 013440           58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSL  137 (443)
Q Consensus        58 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l  137 (443)
                      +..+..+.+..|..  ...... ...+..|.+|++.+|.+..+...+..+++|++|++++|.|+++..+..+..|+.|++
T Consensus        71 l~~l~~l~l~~n~i--~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLI--AKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhh--hhhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence            34444444555543  221111 245667777777777776665445667777777777777766666666666777777


Q ss_pred             CCCCCCCCchhhcCCCCCCEEeccCCccccccch-HHhhcCCCCcEEEccCCCCC
Q 013440          138 AYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       138 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  191 (443)
                      .+|.++.+. .+..+++|+.+++++|.+. .+.. . ...+.+++.+.++.|.+.
T Consensus       148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNLISDIS-GLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCcchhcc-CCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchh
Confidence            777666552 3444666777777664332 2222 1 245566666666666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=9.4e-06  Score=51.17  Aligned_cols=37  Identities=32%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             CCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC
Q 013440           86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD  122 (443)
Q Consensus        86 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~  122 (443)
                      +|++|++++|.++.+|+.+++|++|++|++++|.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4566666666666655555566666666666665544

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.97  E-value=1.3e-06  Score=85.18  Aligned_cols=188  Identities=20%  Similarity=0.219  Sum_probs=125.4

Q ss_pred             cCCCCeEEeCCCCCCCCCC-CcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEE
Q 013440           35 IQKDPIAISLPHRDIQELP-ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL  113 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L  113 (443)
                      .+..+..+.+..+.+.... ....+..|..|++..|.+  ..+... ...+.+|++|++++|.|+.+. .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccc-hhhhhcchheecccccccccc-chhhccchhhh
Confidence            4455666667777776533 344788889999988885  444432 367899999999999988763 36677789999


Q ss_pred             EecCCCCCCcccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          114 CLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       114 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      ++.+|.+..+..+..+..|+.+++++|.++.+... ...+.+++.+++.+|.+...-.   +..+..+..+++..|.+..
T Consensus       146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             eeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc---hHHHHHHHHhhccccccee
Confidence            99999998888888899999999999988877554 5778888888888865433322   2233344444555554422


Q ss_pred             ccccCCCchhhhhccCCCC--CCEEEeecCCCCCCCCcc-ccccCcEEEE
Q 013440          193 EKVEGGSNASLVELERLTE--LTTLEIEVPDAEILPPDF-VSVELQRYKI  239 (443)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~-~~~~L~~l~l  239 (443)
                      .          ..+..+..  |+.+.+.+|.+...+..+ ....+..+++
T Consensus       223 ~----------~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~  262 (414)
T KOG0531|consen  223 L----------EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL  262 (414)
T ss_pred             c----------cCcccchhHHHHHHhcccCccccccccccccccccccch
Confidence            1          22222222  777788888776653222 3455555555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=3.3e-06  Score=74.73  Aligned_cols=92  Identities=15%  Similarity=0.095  Sum_probs=45.9

Q ss_pred             cccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccc
Q 013440          284 QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE  363 (443)
Q Consensus       284 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  363 (443)
                      +.+++++...|.........-. ...||++..+.+.+|+-- ..   ..-.....||.+-.|.+.. +++-++  +.+.+
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l-~r~Fpnv~sv~v~e~PlK-~~---s~ek~se~~p~~~~LnL~~-~~idsw--asvD~  244 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKL-SRIFPNVNSVFVCEGPLK-TE---SSEKGSEPFPSLSCLNLGA-NNIDSW--ASVDA  244 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhH-HhhcccchheeeecCccc-ch---hhcccCCCCCcchhhhhcc-cccccH--HHHHH
Confidence            3455555555543221111111 336777777777777521 11   1112445566666666654 233333  22333


Q ss_pred             cccccccceeeeccCcCccc
Q 013440          364 DQSFSNLRIINVDSCRKLKY  383 (443)
Q Consensus       364 ~~~~~~L~~L~i~~c~~l~~  383 (443)
                      +..||.|+.|.+.+-|-...
T Consensus       245 Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  245 LNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HcCCchhheeeccCCccccc
Confidence            55677777777766555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=4.6e-06  Score=73.80  Aligned_cols=85  Identities=26%  Similarity=0.319  Sum_probs=65.8

Q ss_pred             HHHhcCCCCCEEEcCCCcccc---ccccccCCCCCcEEEecCCCCCC-cccc-cCCCCCCEEEcCCCCCC--CCchhhcC
Q 013440           79 HFFEGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELAD-IAAI-GQLKKLEILSLAYSNIN--QLPVEIGQ  151 (443)
Q Consensus        79 ~~~~~l~~L~~L~l~~~~~~~---~p~~l~~l~~L~~L~l~~~~l~~-~~~~-~~l~~L~~L~l~~~~~~--~lp~~~~~  151 (443)
                      .+...+..++.+|+.+|.++.   +...+.++|+|++|+++.|.+.. +... -.+.+|+.|.|.++.+.  .....+..
T Consensus        65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            344678899999999998865   55556789999999999999877 5444 46788999999988665  45556677


Q ss_pred             CCCCCEEeccCC
Q 013440          152 LTRLQLLDLSNC  163 (443)
Q Consensus       152 l~~L~~L~l~~~  163 (443)
                      +|.++.|.++.|
T Consensus       145 lP~vtelHmS~N  156 (418)
T KOG2982|consen  145 LPKVTELHMSDN  156 (418)
T ss_pred             chhhhhhhhccc
Confidence            888888877775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.87  E-value=3.9e-07  Score=89.57  Aligned_cols=153  Identities=19%  Similarity=0.145  Sum_probs=102.3

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcC---------------------------------CCCCCcEEEcccCCCCCccCcH
Q 013440           32 EETIQKDPIAISLPHRDIQELPERL---------------------------------QCPNLQLFLLYTEGNGPMQVSD   78 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~---------------------------------~~~~L~~L~l~~~~~~~~~~~~   78 (443)
                      ++--+..+|+|.+.++.+..+.+..                                 -..+|.+.+++||..  ..+..
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~  181 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDE  181 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHH
Confidence            4455678999999988874433211                                 112344445555543  22222


Q ss_pred             HHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcc--cccCCCCCCEEEcCCCCCCCCchhhcCCCCCC
Q 013440           79 HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ  156 (443)
Q Consensus        79 ~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~  156 (443)
                      + +.-++.|+.|+++.|.++++. .+..|++|++|++++|.+..++  ....|. |+.|.+++|.++++ .++.++++|+
T Consensus       182 S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~  257 (1096)
T KOG1859|consen  182 S-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLY  257 (1096)
T ss_pred             H-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhh
Confidence            2 345788888999999888775 6788899999999999877732  223344 88999999988877 5688899999


Q ss_pred             EEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       157 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      .||++.|-+.+.-.-.-+..+..|+.|.+.+|++
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            9999885433322212255667788888888765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.75  E-value=5.4e-06  Score=82.82  Aligned_cols=247  Identities=16%  Similarity=0.120  Sum_probs=118.8

Q ss_pred             CCCCCCEEeccCCccccccc-hHHhhcCCCCcEEEccCC-CCCcccccCCCchhhhhccCCCCCCEEEeecCC-CCCCCC
Q 013440          151 QLTRLQLLDLSNCWWLEVIA-PNVISKLSQLEELYMGNG-FSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPP  227 (443)
Q Consensus       151 ~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~  227 (443)
                      .++.|+.+.+.+|....... ..+...+++|+.|+++++ .......    .........+++|+.|++.++. +.+..-
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            36677777776665444421 123556677777777652 1111000    0111233455667777776665 332221


Q ss_pred             cc---ccccCcEEEEEecC-CCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC---cccc
Q 013440          228 DF---VSVELQRYKIRIGD-GPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG---VQSV  300 (443)
Q Consensus       228 ~~---~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~---~~~~  300 (443)
                      ..   .|++|+.+.+..+. ..+.........++.|+.|++++|........... ...+++++.+.+.....   +...
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~  340 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDL  340 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHH
Confidence            11   24667776643333 22222223345667777777777655322222222 22235555554443332   2211


Q ss_pred             ccccccCCCC-CCccEEEEecccCceeecccccccccCccCccc-ceecccccccc-ccccccccccccccccceeeecc
Q 013440          301 VHELDDGEGF-PRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE-ALSLMFLTNLE-TICYSQLREDQSFSNLRIINVDS  377 (443)
Q Consensus       301 ~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~-~~~~~~~~~~~~~~~L~~L~i~~  377 (443)
                      ..... .... -.++.+.+..|++++...    ..... ..... .+.+.+|+.++ .+...    ...+..++.|++..
T Consensus       341 ~l~~~-~~~~~d~~~~~~~~~~~~l~~~~----l~~~~-~~~~~~~~~l~gc~~l~~~l~~~----~~~~~~l~~L~l~~  410 (482)
T KOG1947|consen  341 SLSGL-LTLTSDDLAELILRSCPKLTDLS----LSYCG-ISDLGLELSLRGCPNLTESLELR----LCRSDSLRVLNLSD  410 (482)
T ss_pred             HHHHh-hccCchhHhHHHHhcCCCcchhh----hhhhh-ccCcchHHHhcCCcccchHHHHH----hccCCccceEeccc
Confidence            11000 0011 133333333333333221    00111 11111 45666666662 22111    12234489999999


Q ss_pred             CcCcccccChhhhhcccccceeeeccCcccccccc
Q 013440          378 CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG  412 (443)
Q Consensus       378 c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~  412 (443)
                      |..++..........+..+..+.+.+|+.+.....
T Consensus       411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~  445 (482)
T KOG1947|consen  411 CRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL  445 (482)
T ss_pred             CccccccchHHHhhhhhccccCCccCcccccchhh
Confidence            99998876544433478889999999988876653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=7e-05  Score=47.17  Aligned_cols=33  Identities=42%  Similarity=0.621  Sum_probs=15.8

Q ss_pred             CCCEEEcCCCCCCCCchhhcCCCCCCEEeccCC
Q 013440          131 KLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC  163 (443)
Q Consensus       131 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~  163 (443)
                      +|++|++++|.++.+|..+++|++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            345555555555555444555555555555553

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.60  E-value=4.9e-06  Score=65.15  Aligned_cols=106  Identities=18%  Similarity=0.206  Sum_probs=63.7

Q ss_pred             eEEeCCCCCCCCCCC----cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440           40 IAISLPHRDIQELPE----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l  115 (443)
                      -.++++.|.+-.++.    .+....|+..++++|.+  +.+|..+-.+++.+..|++..|.+..+|.++..++.|+.+++
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            344555554432222    22445566667777764  666666655666677777777777777766666777777777


Q ss_pred             cCCCCCC-cccccCCCCCCEEEcCCCCCCCCch
Q 013440          116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPV  147 (443)
Q Consensus       116 ~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~  147 (443)
                      +.|.+.. +..+..+.+|-+|+..++.+..++.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            7666655 5555556666666666665544443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.53  E-value=0.00019  Score=60.23  Aligned_cols=99  Identities=19%  Similarity=0.249  Sum_probs=53.8

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC-CCCCcEEEecCCCCCC---cccccCCCCCCEE
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD---IAAIGQLKKLEIL  135 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L  135 (443)
                      ..-.++++.|..  ..++.  |..++.|..|.+..|.|+.+.+.+.. +++|..|.+.+|.+..   +.....|++|++|
T Consensus        43 ~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            444566666653  33322  45566666666666666665444433 3456666666666544   4445556666666


Q ss_pred             EcCCCCCCCCch----hhcCCCCCCEEeccC
Q 013440          136 SLAYSNINQLPV----EIGQLTRLQLLDLSN  162 (443)
Q Consensus       136 ~l~~~~~~~lp~----~~~~l~~L~~L~l~~  162 (443)
                      .+-+|.++.-+.    .+..+++|+.||+.+
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            666665552221    244555555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.51  E-value=0.00034  Score=58.80  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=84.4

Q ss_pred             CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc--ccccCCCCCcEEE
Q 013440           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLC  114 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~  114 (443)
                      ...-.+++.+|++..++....+++|.+|.+..|.+  ..+...+..-+++|..|.+.+|++..+.  ..+..|+.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            35667889999998888888999999999999995  5555555566889999999999987643  3356799999999


Q ss_pred             ecCCCCCC-----cccccCCCCCCEEEcCCC
Q 013440          115 LDWCELAD-----IAAIGQLKKLEILSLAYS  140 (443)
Q Consensus       115 l~~~~l~~-----~~~~~~l~~L~~L~l~~~  140 (443)
                      +-+|....     ...+..+++|++||..+-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99998765     477889999999999764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.48  E-value=0.00019  Score=68.10  Aligned_cols=32  Identities=16%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             cccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440          368 SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC  404 (443)
Q Consensus       368 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C  404 (443)
                      ++|++|.+.+|..+. +|. . ++  .+|+.|.+..+
T Consensus       156 sSLk~L~Is~c~~i~-LP~-~-LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPE-K-LP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Ccc-c-cc--ccCcEEEeccc
Confidence            678888888887663 221 1 12  57788887654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00072  Score=64.23  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             hccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCC-ccccccccccCCCCCc
Q 013440           33 ETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GSSSLPSSLGRLINLQ  111 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~p~~l~~l~~L~  111 (443)
                      +..+..+++|++++|.+..+|.  -.++|++|.+++|.. ...+|..+   ...|++|++++| .+..+|+.      |+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~n-LtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV--LPNELTEITIENCNN-LTTLPGSI---PEGLEKLTVCHCPEISGLPES------VR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCC-cccCCchh---hhhhhheEccCcccccccccc------cc
Confidence            4456889999999998888883  234699999998765 45666543   368999999998 56666654      66


Q ss_pred             EEEecCCCCCCcccccCC-CCCCEEEcCCCCCC---CCchhhcCC-CCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440          112 TLCLDWCELADIAAIGQL-KKLEILSLAYSNIN---QLPVEIGQL-TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (443)
Q Consensus       112 ~L~l~~~~l~~~~~~~~l-~~L~~L~l~~~~~~---~lp~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (443)
                      +|++..+....   +..+ .+|+.|.+.++...   .+|.   .+ ++|+.|.+.+|... .+|.. +.  .+|+.|.++
T Consensus       116 ~L~L~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-cc--ccCcEEEec
Confidence            66676554322   1111 24556655432211   1111   12 46888888776533 23321 11  467777776


Q ss_pred             CC
Q 013440          187 NG  188 (443)
Q Consensus       187 ~~  188 (443)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            54

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.40  E-value=4.4e-05  Score=76.28  Aligned_cols=144  Identities=20%  Similarity=0.142  Sum_probs=78.5

Q ss_pred             cccccceeEEEcCccccccccccchhhHhhcccceeecccc-CCccccc--cccccCCCCCCccEEEEecccCceeeccc
Q 013440          254 VKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL-EGVQSVV--HELDDGEGFPRLKRLLVTDCSEILHIVGS  330 (443)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  330 (443)
                      ..++.++.+.+.++....... ...+....++|+.|+++++ ......+  .... ...+++|+.|++..|..+++.   
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~---  259 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDI---  259 (482)
T ss_pred             hhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCch---
Confidence            346777777777654433322 1123333477777777762 2211111  0111 335677777777777655432   


Q ss_pred             ccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440          331 VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC  404 (443)
Q Consensus       331 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C  404 (443)
                      ........+|+|+.|.+.+|..+++-....+  ...++.|++|++++|..+++........+++.|+.+.+..+
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i--~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSNLTDEGLVSI--AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCccchhHHHHH--HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            1112223367777777777766555443222  24467777777777777766544455556666666554444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=8.5e-06  Score=71.51  Aligned_cols=106  Identities=26%  Similarity=0.287  Sum_probs=68.6

Q ss_pred             CCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440          107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (443)
Q Consensus       107 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (443)
                      +.+.+.|+..+|.+.++....+++.|++|.|+-|+|+.+ ..+..|++|+.|++..|.+.+--....+.++++|+.|.+.
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            445667777777777777777778888888888877766 3467777888888777543332222336777788888887


Q ss_pred             CCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440          187 NGFSGWEKVEGGSNASLVELERLTELTTLE  216 (443)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (443)
                      .|+.......   +-....+.-++||++|+
T Consensus        97 ENPCc~~ag~---nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQ---NYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccch---hHHHHHHHHcccchhcc
Confidence            7765443321   11224456677777665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.36  E-value=2.2e-05  Score=61.65  Aligned_cols=101  Identities=20%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             CcEEEcccCCC-CCccCcHHHHhcCCCCCEEEcCCCccccccccccC-CCCCcEEEecCCCCCC-cccccCCCCCCEEEc
Q 013440           61 LQLFLLYTEGN-GPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD-IAAIGQLKKLEILSL  137 (443)
Q Consensus        61 L~~L~l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l  137 (443)
                      +..+++++|.. ++.+.+.. ..+..+|...++++|.+..+|+.|.. .+.+.+|++.+|.+++ |..+..++.|+.+++
T Consensus        29 ~h~ldLssc~lm~i~davy~-l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYM-LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHH-HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            44566666654 01222222 24566677777777777777766644 3467777777777777 655667777777777


Q ss_pred             CCCCCCCCchhhcCCCCCCEEeccC
Q 013440          138 AYSNINQLPVEIGQLTRLQLLDLSN  162 (443)
Q Consensus       138 ~~~~~~~lp~~~~~l~~L~~L~l~~  162 (443)
                      +.|.+...|..+..+.+|..|+..+
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCC
Confidence            7777777777766677777776665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.13  E-value=0.00016  Score=63.48  Aligned_cols=126  Identities=16%  Similarity=0.074  Sum_probs=66.0

Q ss_pred             cccccceeEEEcCccccccc-c--ccchhhHhhcccceeeccccCCcccccccccc-CCCCCCccEEEEecccCceeecc
Q 013440          254 VKSEASRLMMLKGIKKVSIL-Q--ENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-GEGFPRLKRLLVTDCSEILHIVG  329 (443)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~~-~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~  329 (443)
                      .+-.+++.+++..|.+-... .  ....+..+ .+|+.|+|..|.....-...+.. ...-+.|+.|.+.+|- +..- +
T Consensus       182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~-G  258 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNE-G  258 (388)
T ss_pred             HhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccc-c
Confidence            44578888888887553221 0  01112222 78899999887654321111100 1234668999999983 2111 1


Q ss_pred             ccc---ccccCccCcccceeccccc----cccccccccccccccccccceeeeccCcCcccc
Q 013440          330 SVR---RVRCEVFPLLEALSLMFLT----NLETICYSQLREDQSFSNLRIINVDSCRKLKYL  384 (443)
Q Consensus       330 ~~~---~~~~~~~~~L~~L~l~~c~----~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~  384 (443)
                      ...   .+..-.+|+|..|......    .+..+....+. ..++|-|..+.+.+ ++++..
T Consensus       259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e-~~~~p~L~~le~ng-Nr~~E~  318 (388)
T COG5238         259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE-QDAVPLLVDLERNG-NRIKEL  318 (388)
T ss_pred             HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh-hcccHHHHHHHHcc-CcchhH
Confidence            100   1133456777777665432    12222233232 56788888888876 455544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.00031  Score=59.10  Aligned_cols=40  Identities=13%  Similarity=0.179  Sum_probs=18.6

Q ss_pred             ccccceeeeccCcCcccccChhhhhcccccceeeeccCccc
Q 013440          367 FSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDL  407 (443)
Q Consensus       367 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l  407 (443)
                      +|+|+.|+|++|+++++.+. ..+..+++|+.|.+++.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence            44555555555555554432 23344445555544444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.00018  Score=63.45  Aligned_cols=98  Identities=23%  Similarity=0.185  Sum_probs=70.4

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC---cccccCCCCCC
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLE  133 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~  133 (443)
                      .+.+.+.|+.+||..  .++  +++.+|+.|++|.|+-|.|+.+. .+..|.+|+.|++..|.|.+   +.-+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            356778889998885  544  44788999999999999988863 36788999999999988877   56677888888


Q ss_pred             EEEcCCCCCC--CCch----hhcCCCCCCEEe
Q 013440          134 ILSLAYSNIN--QLPV----EIGQLTRLQLLD  159 (443)
Q Consensus       134 ~L~l~~~~~~--~lp~----~~~~l~~L~~L~  159 (443)
                      .|.|..|.=.  .-+.    .+.-+++|+.|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888776322  1111    234466666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.0021  Score=56.45  Aligned_cols=80  Identities=25%  Similarity=0.365  Sum_probs=37.7

Q ss_pred             cCCCCCEEEcCCCccccccccccCCCCCcEEEecCCC--CCC--cccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCC
Q 013440           83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE--LAD--IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQ  156 (443)
Q Consensus        83 ~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~--l~~--~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~  156 (443)
                      .+..|..|++.++.++.+. .+..+++|++|.++.|.  +..  ......+++|+++++++|++..+.  .....+.+|.
T Consensus        41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3445555555554443321 12345566666666662  222  233334466666666666554211  1233444444


Q ss_pred             EEeccCC
Q 013440          157 LLDLSNC  163 (443)
Q Consensus       157 ~L~l~~~  163 (443)
                      .|++..|
T Consensus       120 ~Ldl~n~  126 (260)
T KOG2739|consen  120 SLDLFNC  126 (260)
T ss_pred             hhhcccC
Confidence            5555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.34  E-value=0.0018  Score=56.80  Aligned_cols=84  Identities=21%  Similarity=0.307  Sum_probs=58.6

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCC--ccc-cccccccCCCCCcEEEecCCCCCC---cccccCCC
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI--GSS-SLPSSLGRLINLQTLCLDWCELAD---IAAIGQLK  130 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~-~~p~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~  130 (443)
                      .+..|+.|.+.+...  .++..  |..+++|+.|.++.|  .+. .++.-...+++|+++++++|++..   +.....+.
T Consensus        41 ~~~~le~ls~~n~gl--tt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGL--TTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccce--eeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            455666666665553  22222  467888899999888  443 344445567999999999998775   56677788


Q ss_pred             CCCEEEcCCCCCCC
Q 013440          131 KLEILSLAYSNINQ  144 (443)
Q Consensus       131 ~L~~L~l~~~~~~~  144 (443)
                      +|..|++.+|..+.
T Consensus       117 nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN  130 (260)
T ss_pred             chhhhhcccCCccc
Confidence            88899999886653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.92  E-value=0.00084  Score=56.53  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=40.3

Q ss_pred             CCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440          309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL  384 (443)
Q Consensus       309 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~  384 (443)
                      .+++++.|.+.+|.++.++- -+.  -.+.+|+|+.|+|++|+++++.....   +..+++|+.|.+.+.+.+...
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~-L~~--l~~~~~~L~~L~lsgC~rIT~~GL~~---L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWC-LER--LGGLAPSLQDLDLSGCPRITDGGLAC---LLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             ccchhhhheeccccchhhHH-HHH--hcccccchheeeccCCCeechhHHHH---HHHhhhhHHHHhcCchhhhch
Confidence            55666666666666554331 111  11256677777777777666654332   345677777777666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.65  E-value=0.029  Score=44.71  Aligned_cols=56  Identities=18%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEec
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLD  116 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~  116 (443)
                      ++.+|+.+.+...   ...+....|.++..|+.+.+..+ +..++ ..+..+.+|+++.+.
T Consensus        10 ~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   10 NCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             T-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             CCCCCCEEEECCC---eeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            3445555555421   23444444455555555555443 33332 223444445555553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.61  E-value=0.026  Score=50.08  Aligned_cols=226  Identities=14%  Similarity=0.114  Sum_probs=141.1

Q ss_pred             cCCCCeEEeCCCCCC----CCCC--------CcCCCCCCcEEEcccCCCCCccCcH---HHHhcCCCCCEEEcCCCcccc
Q 013440           35 IQKDPIAISLPHRDI----QELP--------ERLQCPNLQLFLLYTEGNGPMQVSD---HFFEGMEGLKVLQFPGIGSSS   99 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~----~~l~--------~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~   99 (443)
                      ...+++..+++.-..    +.++        ...+||+|+..+++.|.+ ....|.   .++++-..|..|.+.+|.+..
T Consensus        56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf-g~~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238          56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF-GSEFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc-CcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            345666666664322    2222        334899999999999987 444433   445788999999999998642


Q ss_pred             -----cccc---------ccCCCCCcEEEecCCCCCC-c-----ccccCCCCCCEEEcCCCCCC--CC----chhhcCCC
Q 013440          100 -----LPSS---------LGRLINLQTLCLDWCELAD-I-----AAIGQLKKLEILSLAYSNIN--QL----PVEIGQLT  153 (443)
Q Consensus       100 -----~p~~---------l~~l~~L~~L~l~~~~l~~-~-----~~~~~l~~L~~L~l~~~~~~--~l----p~~~~~l~  153 (443)
                           +...         ...-+.|+++....|.+.. +     ..+.....|+++.+..|.+.  .+    --+...+.
T Consensus       135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~  214 (388)
T COG5238         135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH  214 (388)
T ss_pred             cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC
Confidence                 2211         2345789999999998765 2     34455578999999999776  12    22456789


Q ss_pred             CCCEEeccCCccccccch---HHhhcCCCCcEEEccCCCCCcccccCCCchhhhhc--cCCCCCCEEEeecCCCCC-CCC
Q 013440          154 RLQLLDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL--ERLTELTTLEIEVPDAEI-LPP  227 (443)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~-~~~  227 (443)
                      +|+.|++..|.+......   ..+...+.|++|.+..|-......    .+....+  ...++|..|...+|.... +-.
T Consensus       215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~----~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV----KSVLRRFNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH----HHHHHHhhhhcCCCccccccchhhhcCceee
Confidence            999999999765443221   124556678999999987765443    1222222  235788999999887632 111


Q ss_pred             ccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHh
Q 013440          228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML  282 (443)
Q Consensus       228 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  282 (443)
                      .+..+..                 .-...+.|..+.+.||.+.+.-.+.+.....
T Consensus       291 ~~~l~~~-----------------e~~~~p~L~~le~ngNr~~E~~d~~d~~~~i  328 (388)
T COG5238         291 DISLNEF-----------------EQDAVPLLVDLERNGNRIKELADFGDYYEDI  328 (388)
T ss_pred             eechhhh-----------------hhcccHHHHHHHHccCcchhHHHHHHHHHHH
Confidence            1111110                 0145666777777777665544444434333

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.59  E-value=0.0068  Score=31.65  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=15.1

Q ss_pred             CCCEEEcCCCccccccccccC
Q 013440           86 GLKVLQFPGIGSSSLPSSLGR  106 (443)
Q Consensus        86 ~L~~L~l~~~~~~~~p~~l~~  106 (443)
                      +|++|++++|.++.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467788888877777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.54  E-value=0.04  Score=43.89  Aligned_cols=105  Identities=17%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             cHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCC
Q 013440           77 SDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQL  152 (443)
Q Consensus        77 ~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l  152 (443)
                      +...|.++..|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..  -..+..+.+++.+.+.+ .+..++. .+..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            344567788888888874 455554 34667777888887764 444  35566777777777765 3443333 34557


Q ss_pred             CCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      ++|+.+.+..+  ...++...+..+ +|+.+.+..
T Consensus        81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            77777777542  334444445555 666666543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.77  E-value=0.011  Score=30.80  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=11.0

Q ss_pred             CCEEEcCCCCCCCCchhhc
Q 013440          132 LEILSLAYSNINQLPVEIG  150 (443)
Q Consensus       132 L~~L~l~~~~~~~lp~~~~  150 (443)
                      |++|++++|.++.+|..++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5566666666555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.34  E-value=0.1  Score=25.21  Aligned_cols=15  Identities=27%  Similarity=0.370  Sum_probs=6.0

Q ss_pred             CCCEEEcCCCccccc
Q 013440           86 GLKVLQFPGIGSSSL  100 (443)
Q Consensus        86 ~L~~L~l~~~~~~~~  100 (443)
                      +|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555554443

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.38  E-value=0.095  Score=28.54  Aligned_cols=18  Identities=22%  Similarity=0.410  Sum_probs=10.8

Q ss_pred             cccceeeeccCcCccccc
Q 013440          368 SNLRIINVDSCRKLKYLF  385 (443)
Q Consensus       368 ~~L~~L~i~~c~~l~~~~  385 (443)
                      ++|++|++++|+.+++..
T Consensus         2 ~~L~~L~l~~C~~itD~g   19 (26)
T smart00367        2 PNLRELDLSGCTNITDEG   19 (26)
T ss_pred             CCCCEeCCCCCCCcCHHH
Confidence            556666666666666553

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.36  E-value=0.11  Score=28.24  Aligned_cols=18  Identities=11%  Similarity=0.344  Sum_probs=15.8

Q ss_pred             ccccceeeeccCcccccc
Q 013440          393 LLRLQKVKVEDCDDLKMI  410 (443)
Q Consensus       393 ~~~L~~L~i~~C~~l~~~  410 (443)
                      |++|++|+|++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            578999999999999864

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.31  E-value=0.82  Score=24.65  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=12.1

Q ss_pred             CCCCEEEcCCCCCCCCchh
Q 013440          130 KKLEILSLAYSNINQLPVE  148 (443)
Q Consensus       130 ~~L~~L~l~~~~~~~lp~~  148 (443)
                      .+|+.|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.31  E-value=0.82  Score=24.65  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=12.1

Q ss_pred             CCCCEEEcCCCCCCCCchh
Q 013440          130 KKLEILSLAYSNINQLPVE  148 (443)
Q Consensus       130 ~~L~~L~l~~~~~~~lp~~  148 (443)
                      .+|+.|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.24  E-value=0.031  Score=48.44  Aligned_cols=84  Identities=7%  Similarity=-0.024  Sum_probs=63.0

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL  135 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L  135 (443)
                      .+...+.||++.|..  ..+... |+.+..|..|+++.+.+..+|+.++.+..++.++...|..+. |.+.+..++++++
T Consensus        40 ~~kr~tvld~~s~r~--vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRL--VNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHH--Hhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            566777888887764  333333 356777888888888888888888888888888888887777 7788888888888


Q ss_pred             EcCCCCCC
Q 013440          136 SLAYSNIN  143 (443)
Q Consensus       136 ~l~~~~~~  143 (443)
                      ++.++.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            88887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	443
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 18/131 (13%)

Query: 93  PGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQ 151
             + S+        L+NLQ+L L+W  +  + A+I  L+ L+ L +  S ++ L   I  
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL----E 207
           L +L+ LDL  C  L    P +    + L+ L + +             ++L+ L     
Sbjct: 228 LPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD------------CSNLLTLPLDIH 274

Query: 208 RLTELTTLEIE 218
           RLT+L  L++ 
Sbjct: 275 RLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 26/147 (17%)

Query: 84  MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNI 142
             G   L+   +     P    RL +LQ + +D   L ++   + Q   LE L+LA + +
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVI--------APNVISKLSQLEELYMGNGFSGWEK 194
             LP  I  L RL+ L +  C  L  +        A      L  L+ L +         
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL--------- 190

Query: 195 VEGGSNASLVEL----ERLTELTTLEI 217
                   +  L      L  L +L+I
Sbjct: 191 ----EWTGIRSLPASIANLQNLKSLKI 213

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 98  SSLPSSLGRLINLQTLCLDWC-ELADI-AAIGQLKKLEILSLA-YSNINQLPVEIGQLTR 154
           S+L  ++  L  L+ L L  C  L +     G    L+ L L   SN+  LP++I +LT+
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L+ LDL  C  L  + P++I++L     + +  
Sbjct: 279 LEKLDLRGCVNLSRL-PSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 74  MQVSDHFFEGMEGLKVLQFPGIGS-SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKL 132
           M  S H      G + L F G  +       L +         +                
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNP 58

Query: 133 EILSLAYSNINQLPVEIGQLTRLQL--LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           +I +     +      +   T+     L+L +   L    P+   +LS L+ + +  
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDA 113

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 99  SLPSSLGRLINLQTLCLDWC-ELADI-AAIGQLKKLEILSLAY-SNINQLPVEIGQLTRL 155
           + P   G    L+ L L  C  L  +   I +L +LE L L    N+++LP  I QL   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 156 QLLDLSNC 163
            ++ +   
Sbjct: 304 CIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 98  SSLPSSLGRLINLQTLCLDWCE-LADI-AAIGQLKKLEILSLAYSNINQLP 146
            +LP  + RL  L+ L L  C  L+ + + I QL    I+ +      QL 
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 6e-14
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
           + +    +  +       NL+   L   GN   Q++D      +  L  L       + +
Sbjct: 49  LVVAGEKVASIQGIEYLTNLEY--LNLNGN---QITDISPLSNLVKLTNLYIGTNKITDI 103

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            + L  L NL+ L L+   ++DI+ +  L K+  L+L  ++       +  +T L  L +
Sbjct: 104 SA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG---------GSN--ASLVELER 208
           +    ++ + P  I+ L+ L  L +  N       +             N    +  +  
Sbjct: 163 TES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 209 LTELTTLEI 217
           +T L +L+I
Sbjct: 220 MTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
             +   L ++  L +   ++A I  I  L  LE L+L  + I  +   +  L +L  L +
Sbjct: 37  VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYI 95

Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
                +  I+   +  L+ L ELY+  +  S            +  L  LT++ +L +
Sbjct: 96  GTN-KITDISA--LQNLTNLRELYLNEDNIS-----------DISPLANLTKMYSLNL 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 29/186 (15%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
           ++++       +L    L    N   Q+ D     +  L  L +     + +   + +  
Sbjct: 167 VKDVTPIANLTDLYS--LSLNYN---QIED--ISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           +  L +L +   ++ D++ +  L +L  L +  + I+ +   +  LT+L++L++ +    
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN--- 275

Query: 167 EVIAPNVISKLSQLEELYMGN---------GFSGWEKVEG---GSN--ASLVELERLTEL 212
           ++   +V++ LSQL  L++ N            G   +       N    +  L  L+++
Sbjct: 276 QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKM 335

Query: 213 TTLEIE 218
            + +  
Sbjct: 336 DSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 19/134 (14%)

Query: 86  GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL 145
           G   L       + +      L       L    + D+    +L+ +  L +A   +  +
Sbjct: 1   GAATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 146 PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASL 203
              I  LT L+ L+L+    +  I+P  +S L +L  LY+G             N    +
Sbjct: 60  Q-GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGT------------NKITDI 103

Query: 204 VELERLTELTTLEI 217
             L+ LT L  L +
Sbjct: 104 SALQNLTNLRELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 11/141 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           I ++        L    L    N   +++D      +  L  L+      S + + +  L
Sbjct: 211 ITDITPVANMTRLNS--LKIGNN---KITDLSPLANLSQLTWLEIGTNQISDINA-VKDL 264

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166
             L+ L +   +++DI+ +  L +L  L L  + +    +E IG LT L  L LS    +
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-I 323

Query: 167 EVIAPNVISKLSQLEELYMGN 187
             I P  ++ LS+++     N
Sbjct: 324 TDIRP--LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL- 100
           + + +  I +L        L    L    N   Q+SD     ++ L  L+   +GS+ + 
Sbjct: 226 LKIGNNKITDLSPLANLSQLTW--LEIGTN---QISD--INAVKDLTKLKMLNVGSNQIS 278

Query: 101 -PSSLGRLINLQTLCLDWCELA--DIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
             S L  L  L +L L+  +L   D+  IG L  L  L L+ ++I  +   +  L+++  
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDS 337

Query: 158 LDLSN 162
            D +N
Sbjct: 338 ADFAN 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 21/177 (11%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNG-PMQVSDHFFEGMEGLKVL-----QFPGIGSSSL 100
            + L +      P+L    +   GN   +++     E +E L+ L               
Sbjct: 313 FENLCQISASNFPSLTHLSIK--GNTKRLELGTGCLENLENLRELDLSHDDIETSDCC-- 368

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE--IGQLTRLQ 156
              L  L +LQ+L L + E   +   A  +  +LE+L LA++ +     +     L  L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
           +L+LS+   L++ +  +   L  L+ L + GN F            SL  L RL  L
Sbjct: 429 VLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPK---GNIQKTNSLQTLGRLEIL 481

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 53  PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL---GRLIN 109
           P        Q        N  +         ++ L +  F  +    +  ++      ++
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 110 LQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
           ++++ L      +I          L+ L L  +++++LP  +  L+ L+ L LS     E
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFE 314

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
            +     S    L  L + GN      ++  G   +L  L  L
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
            +   ++  RLINL  L L  C++  I         +L+ L L  + +  +         
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
            L+ L       +  I    +     LE LY+  N  S    ++        +L+ L
Sbjct: 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS---IKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 42  ISLPHRDIQELPERLQ-CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSS 98
           + L    + ELP  L     L+   L    N    +          L  L   G      
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKK--LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 99  SLPSSLGRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
                L  L NL+ L L   ++         +  L  L+ L+L+Y+    L  E   +  
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           +L+LLDL+        A +    L  L+ L + +
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 18/161 (11%)

Query: 62  QLFLLYTEGNGPMQVSDHFFEGMEGLKVL-------QFPGIGSSSLPSSLGRLINLQTLC 114
            L+L   E      +S   FEG+  + V         F  I      ++      LQ L 
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS----SNTFHCFSGLQELD 284

Query: 115 LDWCELADI-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPN 172
           L    L+++ + +  L  L+ L L+ +    L  +       L  L +        +   
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 173 VISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERLTEL 212
            +  L  L EL +  +     +      N  L  L  L  L
Sbjct: 345 CLENLENLRELDLSHDDIETSDC----CNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 76  VSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQ 128
            S+  F+G+  L+ L      FP   +    +SL  L  L+ L L +C+L+ I   A   
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 129 LKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           LK +  + L+++ +    +E     +   L+L++   + +I P+++  LSQ   + +  
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 12/148 (8%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--QFPGIGSSSLPSSL 104
           +  + E        L+         G   +        + L+ L      I SS      
Sbjct: 93  LIFMAETALSGPKALKHLFFI--QTGISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKG 149

Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSN--INQLPVEIGQLTRLQLLDL 160
                L+ L      +  +    +  L++   LSL  +   I  +          Q L+ 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 161 S-NCWWLEVIAPNVISKLSQLEELYMGN 187
                 L +      S +  L      +
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFED 237

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 11/125 (8%)

Query: 96  GSSSLPSSLGRLINLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLP--VEIGQ 151
           G S++ SSL  L  L++L L    +   ++       L  L L+ ++++  +     +G 
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
            + L+ L++S+         +   KL+ LE L +  N  S      G +    V  +   
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS------GANVVGWVLSDGCG 178

Query: 211 ELTTL 215
           EL  L
Sbjct: 179 ELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 51  ELPERLQCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLI 108
           ++   L+  +L+ L L     +G   V     +G   LK L   G   S  +   + R +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV 200

Query: 109 NLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWL 166
           NL+ L +     +  I  +G    L+ L ++ + ++      I   T L+LL++S+    
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS---- 256

Query: 167 EVIAPNVI------SKLSQLEELYM-GNGFSG 191
                N          L  L+ L +  N F+G
Sbjct: 257 -----NQFVGPIPPLPLKSLQYLSLAENKFTG 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 9e-11
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 31/124 (25%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCEL---------------------------ADIAAIGQL 129
           S     ++     L+ L +   +                              ++  G  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS--GAC 293

Query: 130 KKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-N 187
             L  L L+ ++    +P   G  + L+ L LS+  +   +  + + K+  L+ L +  N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 188 GFSG 191
            FSG
Sbjct: 354 EFSG 357

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 99  SLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRL 155
            +PS L    NL  + L    L       IG+L+ L IL L+ ++ +  +P E+G    L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 156 QLLDLSNCWWLEVIAPNVIS-----KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT 210
             LDL+          N+ +      + +       N  +G   V   ++    E     
Sbjct: 541 IWLDLNT---------NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 211 ELTTLEIEVPD 221
            L   +    +
Sbjct: 592 NLLEFQGIRSE 602

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 63  LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELA- 121
           + L     N            + GL+ L       +   S      +L +L L    L+ 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 122 ---DIAAIGQLKKLEILSLAYSNIN-QLPVEIG-QLTRLQLLDLSNCWWLEVIAPNV--I 174
               + ++G    L+ L+++ + ++    V  G +L  L++LDLS               
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 175 SKLSQLEELYM-GNGFSG 191
               +L+ L + GN  SG
Sbjct: 175 DGCGELKHLAISGNKISG 192

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 103 SLGRLI--NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
              ++   +L +  L+    A  +++  L  LE L L+ S+IN           L  LDL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 161 SNCWWLEVIAPNV-ISKLSQLEELYM-GNGFSGWEKVEGGSN-ASLVEL 206
           S       +     +   S L+ L +  N      KV GG    SL  L
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 29/159 (18%)

Query: 51  ELPERL-QCPNLQLFLLYTEGN---GPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLP 101
            +P     C  L+   L    N   G   +       M GLKVL     +F G     LP
Sbjct: 309 AVPPFFGSCSLLESLALS--SNNFSGE--LPMDTLLKMRGLKVLDLSFNEFSG----ELP 360

Query: 102 SSLGRL-INLQTLCLDWCEL-----ADIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTR 154
            SL  L  +L TL L           ++        L+ L L  +    ++P  +   + 
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 155 LQLLDLSNCWWLE-VIAPNVISKLSQLEELYM-GNGFSG 191
           L  L LS   +L   I P+ +  LS+L +L +  N   G
Sbjct: 420 LVSLHLSFN-YLSGTI-PSSLGSLSKLRDLKLWLNMLEG 456

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCEL--ADIAAIGQLKKLEILSLAYSNINQL----PVEIG 150
                  L RL       +                  +  L +  S  N L    P EIG
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM--SY-NMLSGYIPKEIG 653

Query: 151 QLTRLQLLDLS-NCWWLE-VIAPNVISKLSQLEELYM-GNGFSG 191
            +  L +L+L  N   +   I P+ +  L  L  L +  N   G
Sbjct: 654 SMPYLFILNLGHND--ISGSI-PDEVGDLRGLNILDLSSNKLDG 694

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 13/127 (10%)

Query: 95  IGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                  +       +Q + + +  L       ++ ++KKL +L   Y+ +       G 
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
             +L  L+L+    +  I  N      Q+E L    N              ++ + + ++
Sbjct: 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK--------YIPNIFDAKSVS 402

Query: 211 ELTTLEI 217
            ++ ++ 
Sbjct: 403 VMSAIDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 15/129 (11%)

Query: 98  SSLPSSL-GRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAY--------SNINQL 145
           + +P++  G    ++ L     +L  I        +  +  +  +Y         N + L
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 146 PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEK-VEGGSNASL 203
                +   +  ++LSN   +      + S  S L  + + GN  +   K      N + 
Sbjct: 426 DPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 204 VELERLTEL 212
                LT +
Sbjct: 485 KNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 21/163 (12%)

Query: 43  SLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--------QFP 93
           S+  ++   L     +  N+    L    N   +     F     L  +        + P
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINL--SNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 94  GIGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIG 150
                    +      L ++ L + +L  +        L  L  + L+Y++ ++ P +  
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533

Query: 151 QLTRLQLLDLSNCWWL------EVIAPNVISKLSQLEELYMGN 187
             + L+   + N              P  I+    L +L +G+
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 35/145 (24%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI---------------------AAIGQLKKLEILS 136
           + +  ++ RL  L+   +                                  LK L  + 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 137 LAYSN-INQLPVEIGQLTRLQLLDLSNC-------WWLEVIAPNVISKLSQLEELYM-GN 187
           +     + +LP  +  L  +QL++++            +  A        +++ +Y+  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 188 GFSGWEKVEGGSNASLVELERLTEL 212
                         SL ++++L  L
Sbjct: 316 NLK-----TFPVETSLQKMKKLGML 335

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 11/96 (11%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--------AAIGQLKKLEILSLAYSNINQLPVEI 149
           S  P+       L+   +     A            I     L  L +  ++I ++  +I
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185
                + +LD+ +      I  + +    +     +
Sbjct: 586 --TPNISVLDIKDN-PNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 34/143 (23%)

Query: 97  SSSLPSSLGRLI--NLQTLCLDWCEL--ADIAAIGQLKKLEILSLAYSNINQLPVEIGQL 152
             +      R    +L   C++      +   +     K   +    +NI  +   + +L
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL 205

Query: 153 TRLQLLDLSNC----------WWLEVIA--------PNVISKLSQLEELYM-GNGFSGWE 193
           T+L+   + N           W  E                 L  L ++ +         
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-- 263

Query: 194 KVEGGSNASL-VELERLTELTTL 215
                    L   L+ L E+  +
Sbjct: 264 --------KLPTFLKALPEMQLI 278

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
              M  L  +    I  + L + +    N++ L ++     +   I  L  LE L +   
Sbjct: 40  EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98

Query: 141 NINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGS 199
           ++    +  +  LT L LLD+S+    +      I+ L ++  + +              
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDL------------SY 145

Query: 200 NASLVELERLTELTTLEI 217
           N ++ ++  L  L  L+ 
Sbjct: 146 NGAITDIMPLKTLPELKS 163

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 12/150 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIG-SSS 99
           I+L + ++ +L       N++   L          ++ +   G+  L+ L+  G   +S 
Sbjct: 49  ITLANINVTDLTGIEYAHNIKD--LTINNI---HATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 100 LPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
              +L  L +L  L +      D  +  I  L K+  + L+Y+      + +  L  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L++     +       I    +L +LY  +
Sbjct: 164 LNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
              +  +  +     G+ +    L  L  L++L + +  + D   I    KL  L     
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191

Query: 141 NIN 143
            I 
Sbjct: 192 TIG 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
              ++ +  LQ   +G  S+   +  L NL  +     +L DI  +  L KL  + +  +
Sbjct: 42  QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGS 199
            I  +   +  LT L  L L N   +  I P  +  L+ L  L +  N  S         
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTIS--------- 147

Query: 200 NASLVELERLTELTTLEI 217
              +  L  LT L  L  
Sbjct: 148 --DISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 24/183 (13%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRL 107
           I ++       NL    L    N    +SD     + GL  LQ    G+       L  L
Sbjct: 124 ITDIDPLKNLTNLNR--LELSSN---TISD--ISALSGLTSLQQLSFGNQVTDLKPLANL 176

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
             L+ L +   +++DI+ + +L  LE L    + I+ +   +G LT L  L L+     +
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGN---Q 232

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEG---------GSN--ASLVELERLTELTTL 215
           +     ++ L+ L +L +  N  S    + G         G+N  +++  L  LT LT L
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292

Query: 216 EIE 218
           E+ 
Sbjct: 293 ELN 295

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 25/172 (14%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
           + ++    +  NL+   L    N   Q+SD     +  L  L    +  + L    +L  
Sbjct: 189 VSDISVLAKLTNLES--LIATNN---QISD--ITPLGILTNLDELSLNGNQLKDIGTLAS 241

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L NL  L L   +++++A +  L KL  L L  + I+ +   +  LT L  L+L+    L
Sbjct: 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNEN-QL 299

Query: 167 EVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
           E I+P  IS L  L  L +  N  S            +  +  LT+L  L  
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNIS-----------DISPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 23/183 (12%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           I ++       NL    L   GN   Q+ D      +  L  L       S+L   L  L
Sbjct: 211 ISDITPLGILTNLDE--LSLNGN---QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGL 264

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
             L  L L   ++++I+ +  L  L  L L  + +  +   I  L  L  L L     + 
Sbjct: 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNN-IS 322

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSN-----------ASLVELERLTELTTL 215
            I+P  +S L++L+ L+   N  S    +   +N           + L  L  LT +T L
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380

Query: 216 EIE 218
            + 
Sbjct: 381 GLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
             S   L  + TL  D   +  I  +  L  L  ++ + + +  +   +  LT+L  + +
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 97

Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
           +N   +  I P  ++ L+ L  L +  N  +            +  L+ LT L  LE+
Sbjct: 98  NNN-QIADITP--LANLTNLTGLTLFNNQIT-----------DIDPLKNLTNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
           I  L        L    L    N   Q+S+     + GL  L    +  + L   S +  
Sbjct: 255 ISNLAPLSGLTKLTE--LKLGAN---QISN--ISPLAGLTALTNLELNENQLEDISPISN 307

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L NL  L L +  ++DI+ +  L KL+ L    + ++ +   +  LT +  L   +    
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN--- 363

Query: 167 EVIAPNVISKLSQLEELYMGN 187
           ++     ++ L+++ +L + +
Sbjct: 364 QISDLTPLANLTRITQLGLND 384

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           ++++       NL    L    N    +SD      +  L+ L F     S + S L  L
Sbjct: 299 LEDISPISNLKNLTY--LTLYFN---NISDISPVSSLTKLQRLFFYNNKVSDVSS-LANL 352

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
            N+  L     +++D+  +  L ++  L L        PV       +     +      
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT--GA 410

Query: 168 VIAPNVISKLSQLEELY 184
           +IAP  IS      E  
Sbjct: 411 LIAPATISDGGSYTEPD 427

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLT 153
                ++  R   L +L + +  ++ +      +L  L++L+L ++ ++QL  +     T
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERL 209
            L  L L +   ++ I  N   K   L  L +  NG S     + G+   L  L+ L
Sbjct: 98  NLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS---TKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 10/159 (6%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLD 116
            P L++  L  + N   Q+SD  F     L  L            +   +  NL TL L 
Sbjct: 72  LPMLKVLNL--QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 117 WCELADI--AAIGQLKKLEILSLAYSNINQLPVE---IGQLTRLQLLDLSNCWWLEVIAP 171
              L+        QL+ L+ L L+ + I  L  E   I   + L+ L+LS+   ++  +P
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSP 188

Query: 172 NVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
                + +L  L++           +     +   +  L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 10/166 (6%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCL 115
             +  L +L    N   ++    F  +  L+VL      IG          L N+  + L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 116 DWCELADI--AAIGQLKKLEILSLAY---SNINQLPVEIGQLTRLQLLDLSNCWWLEVIA 170
            + +   +   +   +  L+ L L      N++  P     L  L +LDLSN   +  I 
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIN 496

Query: 171 PNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTL 215
            +++  L +LE L +  N  +   K        +  L+ L+ L  L
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWK-HANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 36/179 (20%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 49  IQELPERL--QCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105
           I+E           L  LFL   +    +            ++ L       S+  ++  
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 106 ---RLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLD 159
              +  NL  L L +  L  +   +   L +LE   L Y+NI  L    +  L  ++ L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 160 LSN--------CWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L             L  I       L  LE L M  N   G   ++      L+ L+ L
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG---IKSNMFTGLINLKYL 358

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 46/175 (26%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLGRLINLQT 112
             N+    +Y   N  +Q++ + F  +  L+ L         + SS  PS    L NL  
Sbjct: 429 LENIFE--IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--PSPFQPLRNLTI 484

Query: 113 LCLDWCELADI----------------------------------AAIGQLKKLEILSLA 138
           L L    +A+I                                    +  L  L IL+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSG 191
            +  +++PVE    L  L+++DL     L  +  +V +    L+ L +  N  + 
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 23/182 (12%)

Query: 43  SLPHRDIQELPERLQCPNLQ--LFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGI 95
            L    +  L   ++  NL+              ++ D  F+ ++ L+ L       PGI
Sbjct: 286 HLFSHSLHGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 96  GSSSLPSSLGRLINLQTLCLDWCELADIAAIGQ------LKKLEILSLAYSNINQLPVE- 148
                 +    LINL+ L L     +      +         L IL+L  + I+++  + 
Sbjct: 345 K----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 149 IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE 207
              L  L++LDL      + +       L  + E+Y+  N +     +   S A +  L+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ---LTRNSFALVPSLQ 457

Query: 208 RL 209
           RL
Sbjct: 458 RL 459

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 29/120 (24%), Positives = 36/120 (30%), Gaps = 10/120 (8%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLT 153
                 S      LQ L L  CE+  I   A   L  L  L L  + I  L +     L+
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            LQ L       L  +    I  L  L+EL +  N                  L  L  L
Sbjct: 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117
            P+L+   L   G            G   LK L     G  ++ S+   L  L+ L    
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 118 CELADI---AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNV 173
             L  +   +    L+ L  L +++++           L+ L++L ++   + E   P++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 174 ISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            ++L  L  L +              S  +   L  L  L
Sbjct: 466 FTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 81  FEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILS 136
           F G+E L+ L F    +   S  S    L NL  L +               L  LE+L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 137 LAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWE 193
           +A ++  +  LP    +L  L  LDLS C  LE ++P   + LS L+ L M  N F    
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFS-- 508

Query: 194 KVEGGSNASLVELERL 209
            ++      L  L+ L
Sbjct: 509 -LDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 8e-10
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           I+ + +       Q   L        Q      + ++ L      G        S   L 
Sbjct: 294 IERVKDFSYNFGWQH--LELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----AFSEVDLP 347

Query: 109 NLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164
           +L+ L L    L+       +      L+ L L+++ +  +      L +L+ LD  +  
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
             ++   +V   L  L  L +               N     L  L  L
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVA------FNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 13/173 (7%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSL 104
           IQ L         +LQ  +          + +     ++ LK L      I S  LP   
Sbjct: 88  IQSLALGAFSGLSSLQKLVAV--ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKLEI----LSLAYSNINQLPVEIGQLTRLQLL 158
             L NL+ L L   ++  I    +  L ++ +    L L+ + +N +     +  RL  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
            L N +    +    I  L+ LE   +    F     +E    ++L  L  LT
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 78  DHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLE 133
           +  F G+  L+VL+  G     + LP     L NL  L L  C+L  +   A   L  L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYM-GNGFS 190
           +L+++++N   L       L  LQ+LD S    +       +    S L  L +  N F+
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 191 G 191
            
Sbjct: 557 C 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 29/184 (15%), Positives = 49/184 (26%), Gaps = 37/184 (20%)

Query: 59  PNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQF-------PGIGSSSLPSSLGRLINL 110
             L+   L+  E      +       +EGL  L                +      L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE--------------------IG 150
            +  L    +  +         + L L      Q P                        
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 151 QLTRLQLLDLS-NCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELER 208
            L  L+ LDLS N    +          + L+ L +  NG           +++ + LE+
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-------TMSSNFLGLEQ 397

Query: 209 LTEL 212
           L  L
Sbjct: 398 LEHL 401

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 68/419 (16%), Positives = 136/419 (32%), Gaps = 59/419 (14%)

Query: 46  HRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSS 103
             ++ ++P+ L     +   L    N    V+   F  +E L++L+        +    +
Sbjct: 13  FCNLTQVPQVL--NTTER--LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 104 LGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVE---IGQLTRLQLL 158
              L NL+ L L   ++  +   A   L  L  L L +  ++   ++      L  L  L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEK--VEGGSNASLVELERLTELTTL 215
           DLS      +       KL+ L+ +    N      +  +E     +L     L   +  
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF-SLAANSLY 187

Query: 216 EIEVPDAEILPPDFVSVELQRYKI---RIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI 272
                D       F ++ L+   +            F   + KS+A  L++   I     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG- 246

Query: 273 LQENDGTKMLLQRTEDLWLETLEGV---QSVVHELDDG--EGFPRLKRLLVTDCS----- 322
              ++           L   ++  +      V  L+    E    LK L +         
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 323 ----------EILHIVG-SVRRVRCEVF---PLLEALSL-------------MFLTNLET 355
                     ++L++    +  +    F   P +  + L              FL  L+T
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 356 --ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412
             +  + L       ++  I + S  KL  L   ++  NL+ L + ++E+ D L  ++ 
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFL-SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 10/167 (5%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           + EL         ++  +  + N    + D  F+ +E L+ L        +  +++  + 
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL----RDNALTTIHFIP 381

Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE--IGQLTRLQLLDLSNCWWL 166
           ++  + L   +L  +  I       ++ L+ + +  L +   + ++  LQ+L L+   + 
Sbjct: 382 SIPDIFLSGNKLVTLPKINL--TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 167 EVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
                   S+   LE+L++  N      + E   +     L  L  L
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV-FEGLSHLQVL 485

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 7/141 (4%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGR 106
           I  +         +   +Y   N    + D        ++ L      I + +       
Sbjct: 111 ISRVSCSR-GQGKKN--IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
              L+ L L +  + D+       KL+ L L+ + +  +  E      +  + L N   L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226

Query: 167 EVIAPNVISKLSQLEELYMGN 187
            +I    +     LE   +  
Sbjct: 227 VLI-EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 2/108 (1%)

Query: 78  DHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILS 136
                  + L+ L         +   +     L+TL L   +LA +         +  +S
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184
           L  + +  +   +     L+  DL    +      +  SK  +++ + 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 26/175 (14%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSS 103
           I E+ +       +  +     +   Q      +    +K L         I      + 
Sbjct: 2   IHEIKQNGN----RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI----SAAD 53

Query: 104 LGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC 163
           L     L+ L L    L +   +  L  L  L L     N +  E+     ++ L  +N 
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN---NYV-QELLVGPSIETLHAANN 109

Query: 164 WWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE----RLTELT 213
             +  ++ +        + +Y+  N  +    ++ G  + +  L+     +  + 
Sbjct: 110 -NISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 19/122 (15%)

Query: 99  SLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRL 155
           ++          +   +    L     +       ++ L L+ + ++Q+    +   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 156 QLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215
           +LL+LS+   L       +  LS L  L + N            N  + EL     + TL
Sbjct: 61  ELLNLSSN-VLYETLD--LESLSTLRTLDLNN------------N-YVQELLVGPSIETL 104

Query: 216 EI 217
             
Sbjct: 105 HA 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
           + +         +  + L   +L  I  A+   + LE   L  +  +   +        +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 157 LLDLSN 162
           +  ++ 
Sbjct: 264 VQTVAK 269

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 49  IQELPERL-QCPNLQLFLLY-------TEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSS 98
           + +LP+ L   P LQ   +         +            +    +++       +   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 99  SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTR-LQL 157
              +SL +++ L  L     ++  + A G   KL  L L Y+ I ++P +    T  ++ 
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623

Query: 158 LDLSNCWWLEVIAPNV-ISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
           L  S+   L+ I        +  +  +    N     E      +    +    + +
Sbjct: 624 LGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 18/162 (11%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--------QFP 93
           I    R+I    +  +  N     +    N   +     F     +  +          P
Sbjct: 656 IGSEGRNISCSMDDYKGINAST--VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 94  GIGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIG 150
                    +      L T+ L + +L  +        L  L  + ++Y+  +  P +  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 151 QLTRLQLLDLSNCWWLEV-----IAPNVISKLSQLEELYMGN 187
             ++L+   + +    E        P  I+    L +L +G+
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 25/118 (21%)

Query: 95  IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI----NQL---PV 147
           I        L     L    L    +     +  +KK   +SL  + I    N++     
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 148 EIGQLTRLQLLDLSNC------------------WWLEVIAPNVISKLSQLEELYMGN 187
            I +LT+LQ++  +N                              S L  L ++ + N
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 96  GSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI-NQLPVEIGQLTR 154
             +   +      N       W +   +  +    ++  LSLA      ++P  IGQLT 
Sbjct: 290 SGTINNTIHSLNWNFNKELDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRVPDAIGQLTE 348

Query: 155 LQLLDLSN--------CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL 206
           L++L             +  E + P++  +      ++    F  +++    S+     +
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

Query: 207 ERLTELTTLEIE 218
            R  E+  ++ +
Sbjct: 409 NRNPEMKPIKKD 420

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           ++            +  P+L+   L   G            G   LK L     G  ++ 
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 102 SSLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
           S+   L  L+ L      L  ++       L+ L  L +++++       I   L+ L++
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L ++   + E   P++ ++L  L  L +  
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
             S      LQ L L  CE+  I   A   L  L  L L  + I  L +     L+ LQ 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L       L  +    I  L  L+EL + +
Sbjct: 105 LVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
           SL    I+ + +       Q   L        Q        ++ LK L F      +  S
Sbjct: 288 SLVSVTIERVKDFSYNFGWQH--LELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFS 342

Query: 103 SLGRLINLQTLCLDWCELADIA----AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            +  L +L+ L L    L+       +      L+ L L+++ +  +      L +L+ L
Sbjct: 343 EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           D  +    ++   +V   L  L  L + +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--QFPGIGSSSLPSSLGR 106
           IQ L          L  L         + +     ++ LK L      I S  LP     
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 107 LINLQTLCLDWCELADIA--AIGQLKKLEI----LSLAYSNINQLPVEIGQLTRLQLLDL 160
           L NL+ L L   ++  I    +  L ++ +    L L+ + +N +     +  RL  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220
            N +    +    I  L+ LE   +  G     +     N    +   L  L  L IE  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLG-----EFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 221 D 221
            
Sbjct: 263 R 263

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 80  FFEGMEGLKVLQFPGIGSSSL----PSSLGRLINLQTLCLDWCELADI---AAIGQLKKL 132
            F  +  L  L    I  +            L +L+ L +      +        +L+ L
Sbjct: 416 VFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 133 EILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
             L L+   + QL       L+ LQ+L++++   L+ +   +  +L+ L+++++  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 39  PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG---- 94
             ++++    IQ L   L+   L L     EGN          EG+  L + +F      
Sbjct: 211 FDSLNVMKTCIQGLA-GLEVHRLVLGEFRNEGNLEK-FDKSALEGLCNLTIEEFRLAYLD 268

Query: 95  IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTR 154
                +      L N+ +  L    +  +         + L L      Q P    +L  
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP--TLKLKS 326

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L+ L  ++       +      L  LE L +  NG S        S+     L+ L
Sbjct: 327 LKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKG-CCSQSDFGTTSLKYL 378

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 6e-12
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 25/180 (13%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
           I   + DI+ +      PN+    L   GN   +++D      ++ L  L         L
Sbjct: 48  IIANNSDIKSVQGIQYLPNVTKLFLN--GN---KLTDIKPLTNLKNLGWLFLDENKIKDL 102

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            SSL  L  L++L L+   ++DI  +  L +LE L L  + I  + V + +LT+L  L L
Sbjct: 103 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 160

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEIE 218
            +   +  I P  ++ L++L+ LY+              N  + L  L  L  L  LE+ 
Sbjct: 161 EDN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLELF 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 18/159 (11%)

Query: 73  PMQVSDHF-FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKK 131
              +   F  +               +    +   L ++  +  +  ++  +  I  L  
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGIQYLPN 66

Query: 132 LEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN---- 187
           +  L L  + +  +   +  L  L  L L     ++ ++   +  L +L+ L + +    
Sbjct: 67  VTKLFLNGNKLTDIK-PLTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLEHNGIS 122

Query: 188 ---GFSGWEKVEG---GSN--ASLVELERLTELTTLEIE 218
              G     ++E    G+N    +  L RLT+L TL +E
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 47  RDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLG 105
            DI  L      P L+   LY   N   +++D      +  L  L       S +   L 
Sbjct: 122 SDINGLV---HLPQLES--LYLGNN---KITDITVLSRLTKLDTLSLEDNQISDI-VPLA 172

Query: 106 RLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI-NQLPVEIGQLTRLQLLDLSNCW 164
            L  LQ L L    ++D+ A+  LK L++L L      N+       L     +  ++  
Sbjct: 173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD-- 230

Query: 165 WLEVIAPNVISKLSQLEEL 183
              ++ P +IS     E+ 
Sbjct: 231 -GSLVTPEIISDDGDYEKP 248

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 8/140 (5%)

Query: 75  QVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIG---QLKK 131
                   G   LK L     G  ++ S+   L  L+ L      L  ++       L+ 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 132 LEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGF 189
           L  L +++++       I   L+ L++L ++   + E   P++ ++L  L  L +     
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 190 SGWEKVEGGSNASLVELERL 209
               ++   +  SL  L+ L
Sbjct: 188 E---QLSPTAFNSLSSLQVL 204

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 62  QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCE 119
            L  L    NG + +S +F  G+E L+ L F    +   S  S    L NL  L +    
Sbjct: 79  SLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 120 LADI--AAIGQLKKLEILSLAYSN-INQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVIS 175
                      L  LE+L +A ++       +I  +L  L  LDLS C  LE ++P   +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN 196

Query: 176 KLSQLEELYMGN 187
            LS L+ L M +
Sbjct: 197 SLSSLQVLNMSH 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQ----LKKLEILSLAYSNINQLPVEIGQLTRLQ 156
                +L  L  L L    L+      Q       L+ L L+++ +  +      L +L+
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            LD  +    ++   +V   L  L  L + +
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 4/142 (2%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLGR 106
           +  +P        +L  L+   N    +  + F  +  L+ L    +   S +   +   
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWW 165
           L NL+ L L  C L +I  +  L KL+ L L+ ++++ +       L  LQ L +     
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-Q 242

Query: 166 LEVIAPNVISKLSQLEELYMGN 187
           ++VI  N    L  L E+ + +
Sbjct: 243 IQVIERNAFDNLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 38  DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS 97
               +    ++++E+P+ +   N +L  L    N    +  + F+ +  L++LQ      
Sbjct: 44  QFSKVICVRKNLREVPDGIS-TNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
            ++   +   L NL TL L    L  I   A   L KL+ L L  + I  +P     ++ 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            L+ LDL     L  I+      LS L  L +                  +  L  L +L
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-----------EIPNLTPLIKL 209

Query: 213 TTLEI 217
             L++
Sbjct: 210 DELDL 214

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 29/142 (20%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----------QFPGI 95
           I+ +P     + P+L+   L  E      +S+  FEG+  L+ L               +
Sbjct: 148 IESIPSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206

Query: 96  GS-----------SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSN 141
                        S++   S   L++LQ L +   ++  I   A   L+ L  ++LA++N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

Query: 142 INQLPVEI-GQLTRLQLLDLSN 162
           +  LP ++   L  L+ + L +
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHH 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 13/208 (6%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGR 106
           I  +         +   +Y   N    + D        ++ L      I + +       
Sbjct: 111 ISRVSCSR-GQGKKN--IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
              L+ L L +  + D+       KL+ L L+ + +  +  E      +  + L N   L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226

Query: 167 EVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEIL 225
            +I    +     LE   + GNGF       G       + +R+  +    ++    +  
Sbjct: 227 VLI-EKALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 226 PPDFVSVELQRYKIRIGDGPEDEFDPLL 253
               V            D P    D L+
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLI 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
            +    +++    L+     +  L   GN   Q+S         L++L            
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL- 74

Query: 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
            L  L  L+TL L+   + +   +     +E L  A +NI+++    GQ    + + L+N
Sbjct: 75  DLESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLAN 129

Query: 163 CWWLEVIAPNVISKLSQLEELYMGN 187
              + ++        S+++ L +  
Sbjct: 130 N-KITMLRDLDEGCRSRVQYLDLKL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 36/240 (15%)

Query: 55  RLQCPNLQLF------LLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRL 107
              C  L+ F      +         +++    E      +  +       LP+    RL
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
           I L+                  K+  +LS   S   +L  E     R + +D        
Sbjct: 308 IALK-----------------RKEHALLSGQGSETERLECERENQARQREIDALKE-QYR 349

Query: 168 VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE--RLTELTTLEIEVPDAEIL 225
            +   V  +      L         ++       +  EL+      +  +E++    E  
Sbjct: 350 TVIDQVTLRKQAKITLEQKK--KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 226 PPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQR 285
           P   +   ++RY        E   +   V++ A R   +   K+  + +EN   K L   
Sbjct: 408 PLQLLRAIVKRY-------EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 12/168 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE--GMEGLKVLQFPGIGSSSLPSSLGR 106
                +++  P+L    L    N         +   G   L+ L     G+  + ++   
Sbjct: 340 GSISFKKVALPSLSYLDLS--RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 107 LINLQTLCLDWCELADIA---AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN 162
           L  LQ L      L  +    A   L+KL  L ++Y+N       I   LT L  L ++ 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 163 CWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
             + +    NV +  + L  L +          +  G   +L  L+ L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ---ISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 39/166 (23%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 54  ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQ 111
             L   +L+   L    NG   +    F G+E L+ L F    +   +  S+   L  L 
Sbjct: 371 SDLGTNSLRHLDL--SFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 112 TLCLDWCELADI--AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLE 167
            L + +             L  L  L +A ++     L       T L  LDLS C  LE
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LE 486

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            I+  V   L +L+ L M  N            ++   +L  L+ L
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFL------DSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 13/176 (7%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSL 104
           IQ           +L+  +          +       +  LK L      I S  LP+  
Sbjct: 92  IQSFSPGSFSGLTSLENLVAV--ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKL----EILSLAYSNINQLPVEIGQLTRLQLL 158
             L NL  + L +  +  I    +  L++       L ++ + I+ +  +  Q  +L  L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELT 213
            L   +    I    +  L+ L    +    F     +E    + +  L  +T   
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTR 154
           S +P  +    + + + L +  L  +   +     +L+ L L+   I  +  +    L  
Sbjct: 24  SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L  L L+    ++  +P   S L+ LE L       +    +E      L+ L++L
Sbjct: 82  LSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLAS---LESFPIGQLITLKKL 133

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 17/169 (10%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           I+ L +  +    Q   L        Q+       +  LK L       S     +  L 
Sbjct: 297 IKYLEDVPKHFKWQS--LSIIRC---QLKQFPTLDLPFLKSLTLTMNKGSISFKKVA-LP 350

Query: 109 NLQTLCLDWCELADIAAI----GQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164
           +L  L L    L+              L  L L+++    +      L  LQ LD  +  
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
              V   +    L +L  L +               +   + L  L  L
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKID------FDGIFLGLTSLNTL 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
            ++ +                 F  +  +  +   G+    L   + +    Q+L +  C
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC 317

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS--K 176
           +L     +  L  L+ L+L  +  +    ++  L  L  LDLS    L        S   
Sbjct: 318 QLKQFPTLD-LPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRN-ALSFSGCCSYSDLG 374

Query: 177 LSQLEELYMGN 187
            + L  L +  
Sbjct: 375 TNSLRHLDLSF 385

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 8/115 (6%)

Query: 76  VSDHFFEGMEGLKVLQFPGIG---SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKL 132
                 EG+  + + +F        S        L N+  + L    +  +  + +  K 
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 133 EILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           + LS+    + Q P     L  L+ L L+               L  L  L +  
Sbjct: 310 QSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 30/144 (20%)

Query: 49  IQELPERLQCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLG 105
           ++ + E     +L+ L  L           D  F G+  L  L+  G     ++L +   
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 106 RLINLQTLCLDWCELADI--------------------------AAIGQLKKLEILSLAY 139
              NL  L L  C+L  I                          +   QL  L  L  ++
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 140 SNINQLPVEI-GQLTRLQLLDLSN 162
           + I      +      L   +L+N
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTN 554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLGRLINLQTLCLD 116
             L+   L+   N    +  + F  +  L  L    +     +   +   L NL+ L L 
Sbjct: 147 SKLRE--LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVIS 175
            C + D+  +  L  LE L ++ ++  ++       L+ L+ L + N   + +I  N   
Sbjct: 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFD 263

Query: 176 KLSQLEELYMGN 187
            L+ L EL + +
Sbjct: 264 GLASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 38  DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS 97
               +    R + E+P+ +   N +   L    N    +    F  +  L+VLQ      
Sbjct: 55  QFSKVVCTRRGLSEVPQGIP-SNTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
             +   +   L +L TL L    L  I   A   L KL  L L  + I  +P     ++ 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            L  LDL     LE I+      L  L+ L +                  +  L  L  L
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-----------DMPNLTPLVGL 220

Query: 213 TTLEI 217
             LE+
Sbjct: 221 EELEM 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 25/180 (13%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
           I   + DI+ +      PN+    L+  GN   +++D      ++ L  L         L
Sbjct: 51  IIANNSDIKSVQGIQYLPNVTK--LFLNGN---KLTDIKPLANLKNLGWLFLDENKVKDL 105

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            SSL  L  L++L L+   ++DI  +  L +LE L L  + I  + V + +LT+L  L L
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 163

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEIE 218
            +   +  I P  ++ L++L+ LY+              N  + L  L  L  L  LE+ 
Sbjct: 164 EDN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 18/118 (15%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
            S           L    + D     +L  ++ +    S+I  +   I  L  +  L L+
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 76

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEI 217
               L  I P  ++ L  L  L++              N    L  L+ L +L +L +
Sbjct: 77  GN-KLTDIKP--LANLKNLGWLFLDE------------NKVKDLSSLKDLKKLKSLSL 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 27/194 (13%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS---S 98
           + L    + ++       NL    L+ + N   +V D     ++ LK L+   +     S
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGW--LFLDEN---KVKD--LSSLKDLKKLKSLSLEHNGIS 125

Query: 99  SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            + + L  L  L++L L   ++ DI  + +L KL+ LSL  + I+ +   +  LT+LQ L
Sbjct: 126 DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNL 183

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL-EI 217
            LS    +  +    ++ L  L+ L + +                  +   + L     +
Sbjct: 184 YLSKNH-ISDLRA--LAGLKNLDVLELFS-----------QECLNKPINHQSNLVVPNTV 229

Query: 218 EVPDAEILPPDFVS 231
           +  D  ++ P+ +S
Sbjct: 230 KNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           I ++   +  P L+   LY   N   +++D      +  L  L       S +   L  L
Sbjct: 124 ISDINGLVHLPQLES--LYLGNN---KITDITVLSRLTKLDTLSLEDNQISDI-VPLAGL 177

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166
             LQ L L    ++D+ A+  LK L++L L        P+     L     +  ++    
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--- 234

Query: 167 EVIAPNVISKLSQLEEL 183
            ++ P +IS     E+ 
Sbjct: 235 SLVTPEIISDDGDYEKP 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 73  PMQVSDHF-FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKK 131
           P  ++  F    +     +       +    +   L  + TL      +  I  +  L  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLNN 64

Query: 132 LEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-NGFS 190
           L  L L  + I  L   +  LT++  L+LS    L+ ++   I+ L  ++ L +     +
Sbjct: 65  LIGLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQIT 120

Query: 191 GWEKVEG---------GSNA--SLVELERLTELTTLEI 217
               + G           N   ++  L  LT L  L I
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
           S L  L NLQ L +   +++D+  +  L KL  L    + I+ +   +  L  L  + L 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLK 203

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGN 187
           N   +  ++P  ++  S L  + + N
Sbjct: 204 NN-QISDVSP--LANTSNLFIVTLTN 226

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPS- 102
           +  LP  +     +L  L    N   ++ D  F+    L+ L     +   +  S +PS 
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

Query: 103 -----------SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                      +L   I ++ L      +  +       +L IL L ++N+      +  
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAW-LLN 246

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
              L  +DLS    LE I  +   K+ +LE LY+ N
Sbjct: 247 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 26/190 (13%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           I +  +D+    E +   N ++  +  + +   ++     +    +++L    +    + 
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKI--VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
           + +      +Q L + +  +  +       +  L +L L  ++++ LP  I     +L  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELER 208
           L +SN   LE I  +     + L+ L + +                     N  L  L  
Sbjct: 146 LSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLAI 203

Query: 209 LTELTTLEIE 218
              +  L+  
Sbjct: 204 PIAVEELDAS 213

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
            ++ +  +  L        + +  L    N    V          L +L+      +   
Sbjct: 191 ANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA 242

Query: 102 SSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
             L     L  + L + EL  I      ++++LE L ++ + +  L +    +  L++LD
Sbjct: 243 W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301

Query: 160 LSNCWWLEVIAPNVISKLSQLEELYMGN 187
           LS+   L  +      +  +LE LY+ +
Sbjct: 302 LSHNH-LLHV-ERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 101 PSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
                ++  L+ L +    L  +      +  L++L L+++++  +     Q  RL+ L 
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

Query: 160 LSNCWWLEVIAPNVISKLSQL 180
           L +   +  +  +    L  L
Sbjct: 325 LDHN-SIVTLKLSTHHTLKNL 344

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 12/174 (6%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP- 101
               R    +P  L    ++   L    N    +          L+VL       +++  
Sbjct: 11  DGRSRSFTSIPSGL-TAAMKSLDLS--FNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 102 SSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQL 157
            +   L +L+ L L    L+ +  +  G L  L+ L+L  +    L V      LT LQ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
           L + N      I     + L+ L EL +           +  S  S+ ++  LT
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---NYQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSS 99
           + +P   +      +     ++  +  E +    V   F + ++ L+ L      +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 100 LPSS--LGRLINLQTLCLDWCELADIAAIG----QLKKLEILSLAYSNINQLPVEIGQLT 153
           L +S   G   +LQTL L    L  +   G     LK L  L ++ +  + +P       
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           +++ L+LS+   + V+   +      LE L + N
Sbjct: 411 KMRFLNLSST-GIRVVKTCI---PQTLEVLDVSN 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 57  QCPNLQLFLLYTEGNGP--MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114
             P+LQ  +L    N    MQ +      ++ L  L         +P S      ++ L 
Sbjct: 359 AWPSLQTLVLS--QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416

Query: 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174
           L    +  +      + LE+L ++ +N++   +    L RLQ L +S    L+ +    +
Sbjct: 417 LSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRN-KLKTLPDASL 471

Query: 175 SKLSQLEELYMGN 187
                L  + +  
Sbjct: 472 --FPVLLVMKISR 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQ 156
            S    L     LQ L +   +L  +        L ++ ++ + +  +P  I  +LT LQ
Sbjct: 444 DSFSLFLP---RLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 157 LLDLSN 162
            + L  
Sbjct: 501 KIWLHT 506

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            ++L     L  L LD  EL  +   G L  L  L L+++ +  LP+    L  L +LD+
Sbjct: 48  LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGN 187
           S    L  +    +  L +L+ELY+  
Sbjct: 108 SFN-RLTSLPLGALRGLGELQELYLKG 133

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           +         P  +L  L  +     ++       +  L  L        SLP     L 
Sbjct: 43  LYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 109 NLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWW 165
            L  L + +  L  +   A+  L +L+ L L  + +  LP  +     +L+ L L+N   
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-N 159

Query: 166 LEVIAPNVISKLSQLEELYMGN 187
           L  +   +++ L  L+ L +  
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELA-DI-AAIGQLKKLEILSLAYSNIN-QLPVEIGQLT 153
              +P ++ +L  L  L +    ++  I   + Q+K L  L  +Y+ ++  LP  I  L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 154 RLQLLDLSN 162
            L  +    
Sbjct: 150 NLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 100 LPSSLGRLINLQTLCLDWCEL---ADI-AAIGQLKKLEILSLAYSNINQL----PVEIGQ 151
           L  +  +   +  L L    L     I +++  L  L  L +    IN L    P  I +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSG 191
           LT+L  L +++      I P+ +S++  L  L    N  SG
Sbjct: 100 LTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSG 139

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTR 154
                   G   N Q + L    LA D+  +G  K L  L L  + I   LP  + QL  
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 155 LQLLDLSN 162
           L  L++S 
Sbjct: 270 LHSLNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 44/128 (34%)

Query: 99  SLPSSLGRLINLQTLCLDWCELA-DI-AAIGQLKKL-EILSLAYSNI------------- 142
           +LP S+  L NL  +  D   ++  I  + G   KL   ++++ + +             
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 143 -------NQL----PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-------KLSQLEELY 184
                  N L     V  G     Q + L+          N ++           L  L 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAK---------NSLAFDLGKVGLSKNLNGLD 250

Query: 185 M-GNGFSG 191
           +  N   G
Sbjct: 251 LRNNRIYG 258

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 12/119 (10%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
                   +++ L L   +L  +  + QL  +  L L+++ +  LP  +  L  L++L  
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERLTELTTLEIE 218
           S+   LE +    ++ L +L+EL +  N       ++         L     L  L ++
Sbjct: 494 SDN-ALENVDG--VANLPRLQELLLCNNRLQQSAAIQ--------PLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRL 155
            +LP +L  L  L+ L      L ++  +  L +L+ L L  + + Q      +    RL
Sbjct: 476 RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 156 QLLDLSN 162
            LL+L  
Sbjct: 536 VLLNLQG 542

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 26/190 (13%), Positives = 63/190 (33%), Gaps = 17/190 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           I +  +D+    E +   N ++       +   ++     +    +++L    +    + 
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFK--NSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
           + +      +Q L + +  +  +       +  L +L L  ++++ LP  I     +L  
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELER 208
           L +SN   LE I  +     + L+ L + +                     N  L  L  
Sbjct: 152 LSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLAI 209

Query: 209 LTELTTLEIE 218
              +  L+  
Sbjct: 210 PIAVEELDAS 219

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPS- 102
           +  LP  +     +L  L    N   ++ D  F+    L+ L     +   +  S +PS 
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194

Query: 103 -----------SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                      +L   I ++ L      +  +       +L IL L ++N+      +  
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAW-LLN 252

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
              L  +DLS    LE I  +   K+ +LE LY+ N
Sbjct: 253 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 287

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
            ++ +  +  L        + +  L    N    V          L +L+      +   
Sbjct: 197 ANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA 248

Query: 102 SSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
             L     L  + L + EL  I      ++++LE L ++ + +  L +    +  L++LD
Sbjct: 249 W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307

Query: 160 LSNCWWLEVIAPNVISKLSQLEELYMGN 187
           LS+   L  +      +  +LE LY+ +
Sbjct: 308 LSHNH-LLHV-ERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 101 PSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
                ++  L+ L +    L  +      +  L++L L+++++  +     Q  RL+ L 
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330

Query: 160 LSNCWWLEVIAPNVISKLSQL 180
           L +   +  +  +    L  L
Sbjct: 331 LDHN-SIVTLKLSTHHTLKNL 350

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 13/177 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRL 107
           ++ +P  +      L  L    N  + + D+ F+ +  LK L+        +   +   L
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 108 INLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCW 164
            +L+ L L+ C L  I   A+  L  L +L L + NIN +      +L RL++L++S+  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 165 WLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERLT----ELTTLE 216
           +L+ + PN +  L+ L  L +     +    V   +   LV L  L      ++T+E
Sbjct: 212 YLDTMTPNCLYGLN-LTSLSITHCNLT---AVPYLAVRHLVYLRFLNLSYNPISTIE 264

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 13/177 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRL 107
           +  +  R       L  L  E      +       + GL VL+   +  +++   S  RL
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 108 INLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164
             L+ L +      D           L  LS+ + N+  +P   +  L  L+ L+LS   
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT----ELTTLE 216
            +  I  +++ +L +L+E+ + G   +    VE  +   L  L  L     +LTTLE
Sbjct: 260 -ISTIEGSMLHELLRLQEIQLVGGQLA---VVEPYAFRGLNYLRVLNVSGNQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
                   +L+ L L+   ++ +   A   L  L  L L  + +  +P+ +   L+ L  
Sbjct: 49  QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
           LD+S    + ++   +   L  L+ L +  N       +   + + L  LE+LT
Sbjct: 109 LDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV---YISHRAFSGLNSLEQLT 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
            + H    +         L L  L         V       +  L+ L       S++  
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 103 -SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLL 158
             L  L+ LQ + L   +LA +   A   L  L +L+++ + +  L   +   +  L+ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 159 DLS-NCW 164
            L  N  
Sbjct: 326 ILDSNPL 332

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI 149
              P I    + ++L  L   + L L    +  I+++  ++ L ILSL  + I ++    
Sbjct: 32  GMIPPI--EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD 89

Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLS------QLEELYMG-NGFSGWEKVEGGSNAS 202
                L+ L +S          N I+ LS       L  LYM  N  + W +++      
Sbjct: 90  AVADTLEELWISY---------NQIASLSGIEKLVNLRVLYMSNNKITNWGEID-----K 135

Query: 203 LVELERLTELT 213
           L  L++L +L 
Sbjct: 136 LAALDKLEDLL 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 6/150 (4%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEGLKVLQFPGIGSSSLP 101
            L    +  +          L  L    N  ++ V    F G+  L  L     G   L 
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
                 L  LQ L L    L  +       L  L  L L  + I+ +P      L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L L     +  + P+    L +L  LY+  
Sbjct: 182 LLLHQNR-VAHVHPHAFRDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTR 154
            ++P  +      Q + L    ++ +  A+    + L IL L  + + ++       L  
Sbjct: 24  QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L+ LDLS+   L  + P     L +L  L++   G     ++  G    L  L+ L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYL 134

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLG 105
           +QEL   L      LQ   LY + N    + D  F  +  L  L   G   SS+P  +  
Sbjct: 117 LQELGPGLFRGLAALQY--LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 106 RLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN 162
            L +L  L L    +A +   A   L +L  L L  +N++ LP E    L  LQ L L++
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
             L S S      LQ L L  CE+  I   A   L  L  L L  + I  L +     L+
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            LQ L       L  +    I  L  L+EL + +
Sbjct: 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 98  SSLPS--SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQL 152
           S L +  +  RL NL +L L    L  I+  A   +  L  L L+ ++++ L   +   L
Sbjct: 52  SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTE 211
             L++L L N   + V+  N    ++QL++LY+  N  S   +          +L +L  
Sbjct: 112 QALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS---RFPVELIKDGNKLPKLML 167

Query: 212 LT 213
           L 
Sbjct: 168 LD 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 49  IQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPS-SL 104
           +  L        L  L  L    N    +S   F  +  L+ L      +   +L     
Sbjct: 51  LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL--HTLDEFLF 108

Query: 105 GRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI----GQLTRLQLL 158
             L  L+ L L    +  +   A   + +L+ L L+ + I++ PVE+     +L +L LL
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELY 184
           DLS+   L+ +    + KL    +  
Sbjct: 169 DLSSN-KLKKLPLTDLQKLPAWVKNG 193

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 19/119 (15%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
           + +    NL+ L L   +++D++ +  L KLE LS+  + +  L         L  L L 
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLD 114

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNA--SLVELERLTELTTLEIE 218
           N    E+   + +  L  LE L + N            N   S+V L  L++L  L++ 
Sbjct: 115 NN---ELRDTDSLIHLKNLEILSIRN------------NKLKSIVMLGFLSKLEVLDLH 158

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 60  NLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
           +  L  L+ + N   ++ D      ++ L++L        S+   LG L  L+ L L   
Sbjct: 105 SACLSRLFLDNN---ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN 160

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
           E+ +   + +LKK+  + L        PV+      L + +         I+P  IS   
Sbjct: 161 EITNTGGLTRLKKVNWIDLTGQKCVNEPVKY--QPELYITNTVKDPDGRWISPYYISNGG 218

Query: 179 QLEELY 184
              +  
Sbjct: 219 SYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 18/101 (17%)

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
            +  +     L      +L   ++  L V   +L+ +Q  +  N   ++ +A   +   +
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSLAG--MQFFT 63

Query: 179 QLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEI 217
            L+EL++ +            N  + L  L+ LT+L  L +
Sbjct: 64  NLKELHLSH------------NQISDLSPLKDLTKLEELSV 92

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 66  LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELADI- 123
           L    N    +S+   +    L+ L     G +++   S   L +L+ L L +  L+++ 
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116

Query: 124 -AAIGQLKKLEILSLAYSNINQLPVEI--GQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180
            +    L  L  L+L  +    L        LT+LQ+L + N      I     + L+ L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176

Query: 181 EELYM-GNGFSGWEKVEGGSNASLVELERLT 210
           EEL +  +        E  S  S+  +  L 
Sbjct: 177 EELEIDASDLQ---SYEPKSLKSIQNVSHLI 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 44  LPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103
           L +  +  LPE    P+L+   L    N   ++ +        LK L        +L   
Sbjct: 78  LNNLGLSSLPELP--PHLES--LVASCNSLTELPELPQS----LKSLLVDNNNLKALSDL 129

Query: 104 LGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC 163
                 L+ L +   +L  +  +     L+I+ +  +++ +LP     L  +   +    
Sbjct: 130 PP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ-- 184

Query: 164 WWLEVIAPNVISKLSQLEELYMGN 187
             LE +    +  L  L  +Y  N
Sbjct: 185 --LEELPE--LQNLPFLTAIYADN 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
             LP       +L+++      L ++  +  L  L  +    + +  LP     L  L +
Sbjct: 208 KKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELY 184
            D      L  + P +   L+ L+   
Sbjct: 265 RDNY----LTDL-PELPQSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           ++ELPE    P L    +Y + N    +     +    L+ L       + LP     L 
Sbjct: 227 LEELPELQNLPFLTT--IYADNN---LLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

Query: 109 -----------------NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                            NL  L     E+  +        LE L+++ + + +LP    +
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELPALPPR 338

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQL 180
           L R   L  S    L  + P +   L QL
Sbjct: 339 LER---LIASFN-HLAEV-PELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 27/142 (19%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--AAIGQL-------------KKLEILSLAYSNI 142
           + +P     + +       W E         G+              ++   L L    +
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGW----EKVEG 197
           + LP     L     L  S    L  + P +   L  L          S      E +  
Sbjct: 84  SSLPELPPHLES---LVASCN-SLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138

Query: 198 GSN--ASLVELERLTELTTLEI 217
            +N    L EL+  + L  +++
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDV 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
            ++   S  +L  L +L      + D+  I +L  L  L    +NI  L   + Q T L 
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLT 88

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE-RLTELTT 214
            L   +   L  +    ++ L++L  L    N  +   K++   N  L  L      LT 
Sbjct: 89  YLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTE 141

Query: 215 LEIE 218
           +++ 
Sbjct: 142 IDVS 145

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 13/131 (9%)

Query: 57  QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116
               L         N   +++         L  L       + +   +     L  L   
Sbjct: 104 PLTKLTYLNCD--TN---KLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH 156

Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISK 176
             +      +    +L  L  +++ I +L   + Q   L  L+      +  +    +++
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD---LNQ 210

Query: 177 LSQLEELYMGN 187
             QL  L   +
Sbjct: 211 NIQLTFLDCSS 221

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
            L     L     + C       +    +L +L    + I +L   + Q  +L  L L+N
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNN 327

Query: 163 CWWLEVIAPNVISKLSQLEELYMGN 187
              L  +    +S  ++L+ L   N
Sbjct: 328 T-ELTELD---VSHNTKLKSLSCVN 348

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
                 L +L  L L   +++ I   A   L+KL+ L ++ +++ ++P      + L  L
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVEL 128

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            + +   +  +   V S L  +  + MG 
Sbjct: 129 RIHDNR-IRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 13/159 (8%)

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118
            L+L  L         +     E +  L  L    I   ++    L R   L  L L   
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPETLNELH-LDHNKI--QAIELEDLLRYSKLYRLGLGHN 227

Query: 119 ELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS- 175
           ++  I   ++  L  L  L L  + ++++P  +  L  LQ++ L     +  +  N    
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCP 286

Query: 176 -----KLSQLEELYMGNGFSGWEKVEGGSNASLVELERL 209
                K +    + + N    + +V+  +   + +   +
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 50  QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLI 108
           ++LPE L     +L L   + N    +          L  L         + + SL  L 
Sbjct: 189 KDLPETLN----ELHL---DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 109 NLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEI-------GQLTRLQLLDL 160
            L+ L LD  +L+ + A +  LK L+++ L  +NI ++ V          +      + L
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 161 S-NCWWLEVIAPNVISKLSQLEELYMGN 187
             N      + P     ++    +  GN
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 18/175 (10%)

Query: 42  ISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99
           + L + DI EL +       +L    L    N   ++ +  F  +  L+ L         
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYA--LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116

Query: 100 LPSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLT--RL 155
           +P +L    +L  L +    +  +       L+ +  + +  + +     E G     +L
Sbjct: 117 IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 156 QLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
             L +S    L  I  ++      L EL++  N       +E        +L RL
Sbjct: 175 NYLRISEA-KLTGIPKDL---PETLNELHLDHNKIQ---AIELEDLLRYSKLYRL 222

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            S +  L  L+ L +    +  +  +     ++LE L L+++ + ++         L+ L
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHL 95

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           DLS   +  +        +SQL+ L +  
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLST 124

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 18/109 (16%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 81  FEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA 138
              M+ L+ L      +             +L +L +    L D        ++++L L 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429

Query: 139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            + I  +P ++ +L  LQ L++++   L+ +   +  +L+ L+++++  
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 76  VSDHFFEGMEGLKVLQFPGIGSSSLPSSLG---RLINLQTLCLDWCELADIAAIG---QL 129
                   +  L+ L         L        ++ +LQ L +    ++     G     
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 130 KKLEILSLAYSNINQLPVEI-GQLTR-LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           K L  L+++    N L   I   L   +++LDL +   ++ I P  + KL  L+EL + +
Sbjct: 399 KSLLSLNMSS---NILTDTIFRCLPPRIKVLDLHSN-KIKSI-PKQVVKLEALQELNVAS 453

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQLTRLQ 156
            +S  RL +LQ L ++      +        L  L IL L Y+   QL       L  L+
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 157 LLDLSNCW-WLEVIAPNVISKLSQLEELYMGN 187
           +L L+ C     V++ N    L+ LE L + +
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 54  ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME--GLKVLQFPGIGSSSLPSSL-GRLINL 110
           + L   N                 +  F+G+E  G+K          +L  S+     +L
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 111 QTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLE 167
           + L L   E+  I   A   L  L  L+L+ + +  +   +   L +L++LDLS    + 
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IR 360

Query: 168 VIAPNVISKLSQLEELYMGN 187
            +       L  L+EL +  
Sbjct: 361 ALGDQSFLGLPNLKELALDT 380

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 86  GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQ 144
           G  VL     G ++LP  L    ++ TL +    L  + A   +L+ LE   ++ + +  
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTS 95

Query: 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYMGN 187
           LPV    L  L +                +  L S L +L++  
Sbjct: 96  LPVLPPGLLELSIFSNPL---------THLPALPSGLCKLWIFG 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 8/138 (5%)

Query: 82  EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYS 140
               GLK L   G   +SLP        L+ L +    L  +      L  L   S+  +
Sbjct: 218 ALPSGLKELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLSL---SVYRN 271

Query: 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN 200
            + +LP  +  L+    ++L     L       + +++                      
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 201 ASLVELERLTELTTLEIE 218
              + L     L      
Sbjct: 331 TRALHLAAADWLVPAREG 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 31/156 (19%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           +++    +  LP+ L   ++    L    N    +          L+ L+  G   +SLP
Sbjct: 45  LNVGESGLTTLPDCL-PAHITT--LVIPDNNLTSLPALP----PELRTLEVSGNQLTSLP 97

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEI-----------------LSLAYSNINQ 144
                L+ L         L  +     L KL I                 LS++ + +  
Sbjct: 98  VLPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 155

Query: 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180
           LP    +L +L   +      L  + P + S L +L
Sbjct: 156 LPALPSELCKLWAYNNQ----LTSL-PMLPSGLQEL 186

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 16/202 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEG-LKVLQFPGIGSSSLPSSLGR 106
           I+ LP+  +  +LQ  LL  + N  +  +  + F G+     +L     G   + +S   
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

Query: 107 LINLQTLCL-DWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN 162
              L  L L D   L ++            IL ++ + I+ LP      L +L+     N
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 163 CWWLEVIAPNVISKLSQLEELYMGN-----GFSGWEKVEGGSNASLVELERLTELTTLEI 217
              L+ +    + KL  L E  +        F+ W +     +    +     E+  +  
Sbjct: 236 ---LKKLPT--LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQ 290

Query: 218 EVPDAEILPPDFVSVELQRYKI 239
                  L  D  S   + + +
Sbjct: 291 ARGQRSSLAEDNESSYSRGFDM 312

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117
           P L   +   + N  + ++   F+ +  L+ L     G   LP       +    L +  
Sbjct: 79  PKLH-EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-- 135

Query: 118 CELADIAAI------GQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP 171
            +  +I  I      G   +  IL L  + I ++       T+L  L+LS+   LE +  
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 172 NVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELERLTELTTLE 216
           +V    S    L +           G    +K+   S  +L +L  L +L  L 
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALM 249

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 13/125 (10%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
           ++       L            +L+   NG  ++ +  F G +  ++          LP+
Sbjct: 143 TIERNSFVGLSFESV-------ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 103 -SLGRLINLQTLCLDWCELADIAAIG--QLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
                      L +    +  + + G   LKKL   S    N+ +LP  + +L  L    
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT-LEKLVALMEAS 252

Query: 160 LSNCW 164
           L+   
Sbjct: 253 LTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 132 LEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188
              L    + +  +          L+ +++S    LEVI  +V S L +L E+ +   
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
                 L NL TL L   +++ I+  A   L KLE L L+ + + +LP        LQ L
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQEL 126

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            +     +  +  +V + L+Q+  + +G 
Sbjct: 127 RVHEN-EITKVRKSVFNGLNQMIVVELGT 154

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            +SL  L NL  L L +  ++ +   ++     L  L L  + + ++P  +     +Q++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268

Query: 159 DLS-NCWWLEVIAPNVI------SKLSQLEELYMGN 187
            L  N   +  I  N        +K +    + + +
Sbjct: 269 YLHNNN--ISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR 106
           I ++         NL    L    N    V +        L+ L         +P  L  
Sbjct: 204 ITKVDAASLKGLNNLAK--LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 107 LINLQTLCLDWCELADIAA--------IGQLKKLEILSLAYSNINQLPVEIG---QLTRL 155
              +Q + L    ++ I +          +      +SL  + +    ++      +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 156 QLLDLSN 162
             + L N
Sbjct: 322 AAVQLGN 328

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 109 NLQTLCLDWCELADI--AAIGQLKKLEILSLAYSN-INQLPVEI-GQLTRLQLLDLSNCW 164
           + QTL L    L  I   A   L  +  + ++    + QL       L+++  +++ N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 165 WLEVIAPNVISKLSQLEELYMGN 187
            L  I P+ + +L  L+ L + N
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFN 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 13/153 (8%)

Query: 47  RDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SL 104
           +DIQ +P     P+ Q   L         +  H F  +  +  +      +   L S S 
Sbjct: 21  KDIQRIPSLP--PSTQT--LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 105 GRLINLQTLCLDW-CELADIA--AIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLD 159
             L  +  + +     L  I   A+ +L  L+ L +  + +   P   ++       +L+
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 160 LSNCWWLEVIAPNVISKL-SQLEELYM-GNGFS 190
           +++  ++  I  N    L ++   L +  NGF+
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAI------GQLKKLEI 134
            + +  LK L     G    P             L+  +   + +I      G   +   
Sbjct: 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 135 LSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYMGN 187
           L L  +    +       T+L  + L+   +L VI  +    + S    L +  
Sbjct: 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 59/391 (15%), Positives = 115/391 (29%), Gaps = 69/391 (17%)

Query: 58  CPNLQLFLLYTEGNGPMQVSD----HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113
             +L++   Y       ++S             L  ++        L        NL+  
Sbjct: 191 NTSLEVLNFYMTEFA--KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 114 CLDWCELAD-----IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
           C                +   +KL  L L+Y   N++P+      +++ LDL        
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTLEIEVPDAEILPP 227
               +I K   LE L   N            +  L  L +   +L  L IE    E    
Sbjct: 309 DHCTLIQKCPNLEVLETRNVI---------GDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 228 DFVSV--------------ELQR---YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270
           D   +              EL+    Y   I +   +     L      RL++L   +++
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 271 SILQENDGTKMLLQ---RTEDLWLE------TLEGVQSVVHELDDGEGFPRLKRLLVTDC 321
           + L  ++G + LL    +             T  G+  +      G+  P ++ +L+   
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------GQYSPNVRWMLLGYV 473

Query: 322 SE----ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS 377
            E    ++                L+ L +      E    + +       +LR + V  
Sbjct: 474 GESDEGLMEFSRGCPN--------LQKLEMRGCCFSERAIAAAVT---KLPSLRYLWVQG 522

Query: 378 CRKLKYLFS-FSMAKNLLRLQKVKVEDCDDL 407
            R          MA+    ++ +      ++
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 21/178 (11%), Positives = 59/178 (33%), Gaps = 15/178 (8%)

Query: 57  QCPNLQ-LFLLYTE--GNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113
               L+ +             +++    + +E LK+ +  G  +  L S +     ++TL
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 114 CLDWCELAD-----IAAIGQ-LKKLEILSLAYSNINQLPVE-----IGQLTRLQLLDLSN 162
            ++    ++     +  + Q    LE+L+   +   ++  +           L  + + +
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 163 CWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEV 219
              LE++      + L +     +       EK         +    L+ +   E+ +
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
              +  L  L+ L L    +  +        + LE L ++++ +  +      +  L+ L
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHL 126

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           DLS   +  +        L++L  L +  
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 62  QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-----GRLINLQTLCLD 116
           +L  L  + NG            + +  L+   +  +SL S           ++  L L 
Sbjct: 378 RLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS-NCWWLEVIAPNVIS 175
              L          K+++L L  + I  +P ++  L  LQ L+++ N   L+ +   V  
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ--LKSVPDGVFD 494

Query: 176 KLSQLEELYMGN 187
           +L+ L+ +++ +
Sbjct: 495 RLTSLQYIWLHD 506

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 89  VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL-PV 147
           VL         L         L+ L      L  IA + +L KL+ L L+ + ++    V
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 148 EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
              +   L  L+LS          N I  LS +E L
Sbjct: 83  LAEKCPNLTHLNLSG---------NKIKDLSTIEPL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQL 152
             +P  +      L+ + L   +++++A       L+ L  L L  + I +LP  +   L
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGL 103

Query: 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT 210
             LQLL L+    +  +  +    L  L  L + +     + +  G+ + L  ++ + 
Sbjct: 104 FSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK--LQTIAKGTFSPLRAIQTMH 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPV 147
           L               +L  L+ +     ++ DI   A      +  + L  + +  +  
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 148 EI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           ++   L  L+ L L +   +  +  +    LS +  L + +
Sbjct: 99  KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD 138

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLP-VEIG---QLTRLQLLDLS-NC 163
               L L+  E   + A G  KKL  L     + N++  +E G     + +  + L+ N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91

Query: 164 WWLEVIAPNVISKLSQLEELYMGN 187
             LE +   +   L  L+ L + +
Sbjct: 92  -RLENVQHKMFKGLESLKTLMLRS 114

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIG-QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
           +     +  + L L   ++  I  +G  L + + +  + + I +L      L RL+ L +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLV 71

Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELT 213
           +N   +  I   +   L  L EL +  N       ++      L  L+ LT L 
Sbjct: 72  NNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLD-----PLASLKSLTYLC 119

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
           +      + L   G     + +    L     +     E+  +     L++L+ L +  +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 141 NINQLPVEIGQ-LTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
            I ++   + Q L  L  L L+N         N + +L  L+ L
Sbjct: 75  RICRIGEGLDQALPDLTELILTN---------NSLVELGDLDPL 109

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 89  VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL-PV 147
           VL         +       +NL+ L L    L  ++ + +L KL+ L L+ + I     +
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM 89

Query: 148 EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
              +L  L  L+LS          N +  +S LE L
Sbjct: 90  LAEKLPNLTHLNLSG---------NKLKDISTLEPL 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 76/453 (16%), Positives = 135/453 (29%), Gaps = 133/453 (29%)

Query: 3   DVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQ 62
           D++ V   +       F+  +V D+ K +    + D I I         L  RL      
Sbjct: 20  DILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTL--RL------ 67

Query: 63  LFLLYTEGNGPMQVSDHFFEGMEGLKVLQ--FPGIGSSSLPSSLGRLINLQTLCLDWCEL 120
            + L ++     ++   F E      VL+  +  + S            ++T       +
Sbjct: 68  FWTLLSKQE---EMVQKFVEE-----VLRINYKFLMSP-----------IKTEQRQ-PSM 107

Query: 121 ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ--------LLDLSNCWWL------ 166
                I Q  +L        N NQ       ++RLQ        LL+L     +      
Sbjct: 108 MTRMYIEQRDRLY-------NDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 167 ----EVIAPNVISKLSQLEELYMGNG-FSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221
                 +A +V        +  M    F  W  +    N+    LE L +L         
Sbjct: 160 GSGKTWVALDVCLSYKVQCK--MDFKIF--WLNL-KNCNSPETVLEMLQKLLY------- 207

Query: 222 AEILPPDFVSVE--LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGT 279
              + P++ S        K+RI            +++E  RL+  K  +           
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHS----------IQAELRRLLKSKPYEN---------- 245

Query: 280 KMLLQRTEDLWLETLEGVQS--VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE 337
             LL          L  VQ+    +  +        K LL T   ++   + +       
Sbjct: 246 -CLL---------VLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 338 V------FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK 391
           +          E  SL  L  L+      L  +   +N R ++         + + S+  
Sbjct: 291 LDHHSMTLTPDEVKSL-LLKYLDCRP-QDLPREVLTTNPRRLS---------IIAESIRD 339

Query: 392 NLLRLQKVKVEDCDDLKMIIGPDME--KPPTTQ 422
            L      K  +CD L  II   +   +P   +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY-SNINQLP 146
           L    I  S+L   L +   LQ L L+   L+D  +  + +   L  L+L+  S  ++  
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

Query: 147 VE--IGQLTRLQLLDLSNCWWL--EVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS 202
           ++  +   +RL  L+LS C+    + +   V      + +L      SG+ K      + 
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN----LSGYRK--NLQKSD 213

Query: 203 LVEL-ERLTELTTL 215
           L  L  R   L  L
Sbjct: 214 LSTLVRRCPNLVHL 227

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 86  GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNI 142
           G+   + P        +       +Q + L    +        + Q  KL+ LSL    +
Sbjct: 71  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130

Query: 143 NQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISK-LSQLEELYMGN 187
           +   V  + + + L  L+LS C      A   +    S+L+EL +  
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 58  CPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG----IGSSSLPSSLGRLINLQT 112
           C  L  L L +        V        E +  L   G    +  S L + + R  NL  
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 113 LCLDWCEL---ADIAAIGQLKKLEILSLAY-SNI-NQLPVEIGQLTRLQLLDLSNC 163
           L L    +          QL  L+ LSL+   +I  +  +E+G++  L+ L +   
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 27/149 (18%)

Query: 66  LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCLDWCELADIA 124
           L  + N    +    F  +  L++L        +LP+ +   L NL+TL +   +L  + 
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 125 A--IGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCW----------------- 164
                QL  L  L L  + +  LP  +   LT+L  L L                     
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161

Query: 165 -WLE-----VIAPNVISKLSQLEELYMGN 187
             L       +      KL++L+ L + N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
           +   +    L ++  +  +  ++  +  I  L  +  L+L  + ++ +   + +LT L  
Sbjct: 32  TDAVTQNE-LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA-LKELTNLTY 89

Query: 158 LDL-SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT----EL 212
           L L  N   L+ +   V  KL+ L+EL +    +  + +  G    L  L  L     +L
Sbjct: 90  LILTGNQ--LQSLPNGVFDKLTNLKELVLVE--NQLQSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 213 TTLEIEVPD 221
            +L   V D
Sbjct: 146 QSLPKGVFD 154

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 66  LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCLDWCELADIA 124
           L  +  G   +SD  F G+  L  L        +L + +   L  L TL L   +LA + 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 125 A--IGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE 181
                 L +L+ L L  + +  LP  +  +LT+L+ L L+    L+ I      KL+ L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQ 158

Query: 182 ELYMGN 187
            L +  
Sbjct: 159 TLSLST 164

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLE----ILSLAYSNINQLPVEIGQL 152
           + LP       +L+ L +    L  + A   +    E          + I  +P  I  L
Sbjct: 173 TFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 153 TRLQLLDLSN 162
                + L +
Sbjct: 230 DPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 22/109 (20%)

Query: 84  MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNI 142
           +     LQ   +  SSLP +L     +  L +    L  +      L+ L+        +
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDN---RL 112

Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL----SQLEELYMGN 187
           + LP     L  L + +            N ++ L    + LE +   N
Sbjct: 113 STLPELPASLKHLDVDN------------NQLTMLPELPALLEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 33/159 (20%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
            L   ++  LP+ L  P + +  L    N  + + +        L+ L       S+LP 
Sbjct: 65  QLNRLNLSSLPDNL-PPQITV--LEITQNALISLPELP----ASLEYLDACDNRLSTLPE 117

Query: 103 SLGRLINLQTLCLDWCELADI-AAIGQLKK-----------------LEILSLAYSNINQ 144
                 +L+ L +D  +L  +      L+                  LE+LS+  + +  
Sbjct: 118 LPA---SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF 174

Query: 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
           LP     L     LD+S    LE + P V  +    EE 
Sbjct: 175 LPELPESLEA---LDVSTN-LLESL-PAVPVRNHHSEET 208

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 11/129 (8%)

Query: 57  QCPNLQLFLLYTEGNGPMQVSDH----FFEGMEGLKVLQ-FPGIGSSSLPSSLGRLINLQ 111
           + P L+                        G + L+ L  F     + LP+       L 
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292

Query: 112 TLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVE--IGQLTRLQLLDLSNCWWL 166
           TL L +  +     +  + Q  KL+ L +    I    +E        L+ L +      
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTCKDLRELRVFPSEPF 351

Query: 167 EVIAPNVIS 175
            +     ++
Sbjct: 352 VMEPNVALT 360

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 14/160 (8%)

Query: 95  IGSSSLPSSLGRLINLQTLCLDWC-ELADIAAIGQ-LKKLEILSLAYSNINQLPVE--IG 150
                  + +    +L+ L L           IG   KK+E+LS+A++  + L +   + 
Sbjct: 419 PLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478

Query: 151 QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERL 209
               L+ L++ +C + +       SKL  +  L+M +  S        S  +   L +++
Sbjct: 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM-SSCS-------VSFGACKLLGQKM 530

Query: 210 TELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEF 249
            +L    I+   A    P+   VE + +  R   GP  + 
Sbjct: 531 PKLNVEVIDERGAPDSRPESCPVE-RVFIYRTVAGPRFDM 569

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 8e-04
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 103 SLGRLINLQTLCLDWCELAD-----IAAIGQLKKLEILSLAYSNI-----NQLPVEIGQL 152
           S  R  NL+ L +   E  +           L +LE + ++   +       L   + ++
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 153 TRLQLLDLSNCWW 165
             L+ +++   + 
Sbjct: 307 KHLKFINMKYNYL 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	443
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.2
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.99
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.99
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.65
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.79

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=5.3e-27  Score=222.77  Aligned_cols=306  Identities=16%  Similarity=0.126  Sum_probs=204.4

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440           32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~  111 (443)
                      ....++++++|++.++.+..++....+++|++|++++|..  ..++.  +.++++|++|++++|.++.++ .+..+++|+
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~  113 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI--TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR  113 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCcc--ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence            3445677788888887777777666777788888877764  44544  577778888888777777664 467777777


Q ss_pred             EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      +|++++|.+.....+..+++|++|++++|.....+..+..+++|+.|++++|... ..+.  +..+++|++|++++|.+.
T Consensus       114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCC
T ss_pred             EEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccc
Confidence            7777777777744477777777777777744433344777777777777775433 3332  566777777777777654


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS  271 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (443)
                      ..          ..+..+++|+.|++++|.+..++.                         +..+++|+.|++++|.+..
T Consensus       191 ~~----------~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~L~~L~l~~n~l~~  235 (347)
T 4fmz_A          191 DI----------SPLASLTSLHYFTAYVNQITDITP-------------------------VANMTRLNSLKIGNNKITD  235 (347)
T ss_dssp             CC----------GGGGGCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCCCC
T ss_pred             cc----------ccccCCCccceeecccCCCCCCch-------------------------hhcCCcCCEEEccCCccCC
Confidence            32          225667777777777666654433                         2556667777777765533


Q ss_pred             cccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccc
Q 013440          272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT  351 (443)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  351 (443)
                      ...    +. .+++|++|++++|.... +..    ...+++|++|++++| .++.++      ....+++|+.|++++| 
T Consensus       236 ~~~----~~-~l~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n-  297 (347)
T 4fmz_A          236 LSP----LA-NLSQLTWLEIGTNQISD-INA----VKDLTKLKMLNVGSN-QISDIS------VLNNLSQLNSLFLNNN-  297 (347)
T ss_dssp             CGG----GT-TCTTCCEEECCSSCCCC-CGG----GTTCTTCCEEECCSS-CCCCCG------GGGGCTTCSEEECCSS-
T ss_pred             Ccc----hh-cCCCCCEEECCCCccCC-Chh----HhcCCCcCEEEccCC-ccCCCh------hhcCCCCCCEEECcCC-
Confidence            221    22 23778888888775433 322    347889999999888 444432      4567888999999887 


Q ss_pred             cccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440          352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      .++......   ...+++|++|++++|+ ++.+++   ...+++|+.|++.+|+
T Consensus       298 ~l~~~~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          298 QLGNEDMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             CCCGGGHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             cCCCcChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            444443221   3458899999999876 666654   4678999999998885

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=5.5e-27  Score=231.61  Aligned_cols=323  Identities=17%  Similarity=0.135  Sum_probs=186.7

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~  114 (443)
                      .+++++.|.+.++.+..++....+++|++|++++|..  ..++.  +.++++|++|++++|.+..++. +..+++|++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  118 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             HhccccEEecCCCCCccCcchhhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence            3456677777766666666655667777777776664  34443  4666777777777776666555 66667777777


Q ss_pred             ecCCCCCCcccccCCCCCCEEEcCCCCCCCCch--------------------hhcCCCCCCEEeccCCccccccchHHh
Q 013440          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPV--------------------EIGQLTRLQLLDLSNCWWLEVIAPNVI  174 (443)
Q Consensus       115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~l  174 (443)
                      +++|.+..+..++++++|++|++++|.++.++.                    .+.++++|+.|++++|.+ ..++.  +
T Consensus       119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~--l  195 (466)
T 1o6v_A          119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISV--L  195 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCGG--G
T ss_pred             CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCChh--h
Confidence            777666664346666677777776666655432                    144445555555555332 22222  4


Q ss_pred             hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhc
Q 013440          175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLV  254 (443)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  254 (443)
                      ..+++|++|++++|.+....          .++.+++|++|++++|.+..++....+++|+.+++..+.....   ..+.
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~  262 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDIT----------PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL---APLS  262 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCG----------GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGT
T ss_pred             ccCCCCCEEEecCCcccccc----------cccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc---hhhh
Confidence            45555555555555443221          1445566666666666655544332446666666644433322   1245


Q ss_pred             ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeeccccccc
Q 013440          255 KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRV  334 (443)
Q Consensus       255 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  334 (443)
                      .+++|+.|++++|.+....+    +.. +++|+.|++++|.... ++.    ...+++|++|++++| .++.+.      
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~----~~~-l~~L~~L~L~~n~l~~-~~~----~~~l~~L~~L~L~~n-~l~~~~------  325 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP----LAG-LTALTNLELNENQLED-ISP----ISNLKNLTYLTLYFN-NISDIS------  325 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG----GTT-CTTCSEEECCSSCCSC-CGG----GGGCTTCSEEECCSS-CCSCCG------
T ss_pred             cCCCCCEEECCCCccCcccc----ccC-CCccCeEEcCCCcccC-chh----hcCCCCCCEEECcCC-cCCCch------
Confidence            56666666666665533211    222 2667777776665432 221    225677777777777 333322      


Q ss_pred             ccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440          335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       335 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      ....+++|+.|++++| .++.++     ....+++|+.|++++| .+++.++   ...+++|+.|++.+|.
T Consensus       326 ~~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          326 PVSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA  386 (466)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred             hhccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence            2456777888888776 455442     1456788888888876 4555543   4677888888888873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.7e-26  Score=228.03  Aligned_cols=313  Identities=15%  Similarity=0.137  Sum_probs=246.0

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR  106 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~  106 (443)
                      +...+....++++++|++++|.+..+++...+++|++|++++|..  ..++.  +.++++|++|++++|.++.++. +..
T Consensus        58 i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~  132 (466)
T 1o6v_A           58 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITDIDP-LKN  132 (466)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred             CccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcc--ccChh--hcCCCCCCEEECCCCCCCCChH-HcC
Confidence            445566778899999999999998888866999999999999986  45554  6889999999999999888765 788


Q ss_pred             CCCCcEEEecCCCCCCc---------------------ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCcc
Q 013440          107 LINLQTLCLDWCELADI---------------------AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWW  165 (443)
Q Consensus       107 l~~L~~L~l~~~~l~~~---------------------~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~  165 (443)
                      +++|++|++++|.+..+                     ..++++++|++|++++|.++.++ .+.++++|+.|++++|.+
T Consensus       133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc
Confidence            89999999988876552                     23567788999999999888775 488999999999999765


Q ss_pred             ccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCC
Q 013440          166 LEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGP  245 (443)
Q Consensus       166 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~  245 (443)
                      .+..+   ++.+++|++|++++|.+...          ..++.+++|++|++++|.+..++....+++|+.+++..+...
T Consensus       212 ~~~~~---~~~l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          212 SDITP---LGILTNLDELSLNGNQLKDI----------GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             CCCGG---GGGCTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred             ccccc---ccccCCCCEEECCCCCcccc----------hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC
Confidence            55444   57899999999999987542          457789999999999999987766446799999999766554


Q ss_pred             CCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCce
Q 013440          246 EDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL  325 (443)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  325 (443)
                      ..   +.+..+++|+.|++++|.+....+    +. .+++|+.|++++|......+     ...+++|++|++++| .++
T Consensus       279 ~~---~~~~~l~~L~~L~L~~n~l~~~~~----~~-~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~  344 (466)
T 1o6v_A          279 NI---SPLAGLTALTNLELNENQLEDISP----IS-NLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNN-KVS  344 (466)
T ss_dssp             CC---GGGTTCTTCSEEECCSSCCSCCGG----GG-GCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSS-CCC
T ss_pred             cc---ccccCCCccCeEEcCCCcccCchh----hc-CCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCC-ccC
Confidence            43   236789999999999987754322    33 34899999999997554332     237899999999999 454


Q ss_pred             eecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCccccc
Q 013440          326 HIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF  385 (443)
Q Consensus       326 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~  385 (443)
                      .+.      ....+++|+.|++++| .++++..     ...+++|++|++++| .++.+|
T Consensus       345 ~~~------~l~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~l~~n-~~~~~p  391 (466)
T 1o6v_A          345 DVS------SLANLTNINWLSAGHN-QISDLTP-----LANLTRITQLGLNDQ-AWTNAP  391 (466)
T ss_dssp             CCG------GGTTCTTCCEEECCSS-CCCBCGG-----GTTCTTCCEEECCCE-EEECCC
T ss_pred             Cch------hhccCCCCCEEeCCCC-ccCccch-----hhcCCCCCEEeccCC-cccCCc
Confidence            432      5678999999999987 4554432     467899999999986 455554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=2.3e-27  Score=242.80  Aligned_cols=330  Identities=11%  Similarity=0.093  Sum_probs=236.2

Q ss_pred             CCCcC-CCCCCcEEEcccCCCCCcc-----------------CcHHHHh--cCCCCCEEEcCCCcccc-ccccccCCCCC
Q 013440           52 LPERL-QCPNLQLFLLYTEGNGPMQ-----------------VSDHFFE--GMEGLKVLQFPGIGSSS-LPSSLGRLINL  110 (443)
Q Consensus        52 l~~~~-~~~~L~~L~l~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~-~p~~l~~l~~L  110 (443)
                      +|... ++++|++|++++|.+ ...                 +|..+ .  ++++|++|++++|.+.. +|..++.+++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             CCHHHhcccCCCEEECcCCcc-ccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            44433 788999999999886 442                 67664 5  78999999999988654 88888899999


Q ss_pred             cEEEecCCC-CCC---cccccCC------CCCCEEEcCCCCCCCCch--hhcCCCCCCEEeccCCccccccchHHhhcCC
Q 013440          111 QTLCLDWCE-LAD---IAAIGQL------KKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLS  178 (443)
Q Consensus       111 ~~L~l~~~~-l~~---~~~~~~l------~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  178 (443)
                      ++|++++|. ++.   |..++.+      ++|++|++++|.++.+|.  .++++++|+.|++++|.+.+.+| . ++.++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence            999999987 763   4555554      889999999998888888  88999999999999877776888 3 78888


Q ss_pred             CCcEEEccCCCCCcccccCCCchhhhhccCCCC-CCEEEeecCCCCCCCCcccc---ccCcEEEEEecCCCCCCCCchhc
Q 013440          179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS---VELQRYKIRIGDGPEDEFDPLLV  254 (443)
Q Consensus       179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~  254 (443)
                      +|+.|++++|.+.. .+        ..++.+++ |++|++++|.+..+|..+..   ++|+.+++..+...... ...+.
T Consensus       354 ~L~~L~L~~N~l~~-lp--------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~  423 (636)
T 4eco_A          354 KLASLNLAYNQITE-IP--------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD-GKNFD  423 (636)
T ss_dssp             EESEEECCSSEEEE-CC--------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT-TCSSC
T ss_pred             CCCEEECCCCcccc-cc--------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc-hhhhc
Confidence            99999998887762 22        56788888 99999999999888876532   47888888655443321 11122


Q ss_pred             -------ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCcccccccccc-----CCCCCCccEEEEeccc
Q 013440          255 -------KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-----GEGFPRLKRLLVTDCS  322 (443)
Q Consensus       255 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~  322 (443)
                             .+++|+.|++++|.+.   ..+..+...+++|+.|++++|... .++.....     ...+++|++|++++| 
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-  498 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQIS---KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-  498 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCC---SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-
T ss_pred             ccccccccCCCCCEEECcCCccC---cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-
Confidence                   5668999999998775   234444444588999999988765 44332210     012338999999988 


Q ss_pred             Cceeeccccccccc--CccCcccceeccccccccccccccccccccccccceeeeccCc------CcccccChhhhhccc
Q 013440          323 EILHIVGSVRRVRC--EVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR------KLKYLFSFSMAKNLL  394 (443)
Q Consensus       323 ~l~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~------~l~~~~~~~~~~~~~  394 (443)
                      .++.++     ...  ..+++|+.|+++++ .++.++..    ...+++|++|+++++.      -...+|  ..+..++
T Consensus       499 ~l~~lp-----~~~~~~~l~~L~~L~Ls~N-~l~~ip~~----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--~~l~~l~  566 (636)
T 4eco_A          499 KLTKLS-----DDFRATTLPYLVGIDLSYN-SFSKFPTQ----PLNSSTLKGFGIRNQRDAQGNRTLREWP--EGITLCP  566 (636)
T ss_dssp             CCCBCC-----GGGSTTTCTTCCEEECCSS-CCSSCCCG----GGGCSSCCEEECCSCBCTTCCBCCCCCC--TTGGGCS
T ss_pred             cCCccC-----hhhhhccCCCcCEEECCCC-CCCCcChh----hhcCCCCCEEECCCCcccccCcccccCh--HHHhcCC
Confidence            454443     123  37889999999885 56665543    3568889999886432      233444  3356788


Q ss_pred             ccceeeeccCccccccccC
Q 013440          395 RLQKVKVEDCDDLKMIIGP  413 (443)
Q Consensus       395 ~L~~L~i~~C~~l~~~~~~  413 (443)
                      +|+.|++++|.- +.++..
T Consensus       567 ~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          567 SLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             SCCEEECCSSCC-CBCCSC
T ss_pred             CCCEEECCCCcC-CccCHh
Confidence            899999988854 666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=4.2e-26  Score=232.89  Aligned_cols=362  Identities=15%  Similarity=0.095  Sum_probs=225.7

Q ss_pred             ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L  110 (443)
                      .....+++|++++|.+..+++  ..++++|++|++++|..  ..+....|.++++|++|++++|.+..+ |..++.+++|
T Consensus        30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            356789999999999977754  33899999999999986  444444468999999999999999874 6789999999


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCccccccchHHhhcCCCCc--EEEc
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE--ELYM  185 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l  185 (443)
                      ++|++++|.+..  +..++++++|++|++++|.++.++ ..+..+++|+.|++++|.+....+. .++.+++|+  .|++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNL  186 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEEC
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hhhhhcccceeEEec
Confidence            999999999888  577899999999999999998653 3445599999999999765544444 478888888  7888


Q ss_pred             cCCCCCcccccCCCc-----------------------------------------------------------------
Q 013440          186 GNGFSGWEKVEGGSN-----------------------------------------------------------------  200 (443)
Q Consensus       186 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  200 (443)
                      ++|.+....+.....                                                                 
T Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l  266 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF  266 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred             CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence            887665443321100                                                                 


Q ss_pred             --hhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccc
Q 013440          201 --ASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEND  277 (443)
Q Consensus       201 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  277 (443)
                        .....++.+++|++|++++|.+..+|..+ .+++|+.+++..+...... ...+..+++|+.|++++|.....++. .
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~  344 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGT-G  344 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCS-S
T ss_pred             CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccch-h
Confidence              00122566788888888888888777765 4578888887544433211 12345666677777776654333221 1


Q ss_pred             hhhHhhcccceeeccccCCcccc--ccccccCCCCCCccEEEEecccCceeeccc---------------------cccc
Q 013440          278 GTKMLLQRTEDLWLETLEGVQSV--VHELDDGEGFPRLKRLLVTDCSEILHIVGS---------------------VRRV  334 (443)
Q Consensus       278 ~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---------------------~~~~  334 (443)
                      .+.. +++|++|++++|......  +..   ...+++|++|++++|. ++.+...                     ....
T Consensus       345 ~~~~-l~~L~~L~l~~n~l~~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          345 CLEN-LENLRELDLSHDDIETSDCCNLQ---LRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             TTTT-CTTCCEEECCSSCCCEEEESTTT---TTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             hhhc-cCcCCEEECCCCccccccCcchh---cccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            1222 256666666665543322  111   2255666666666552 2222100                     0000


Q ss_pred             ccCccCcccceeccccccccccccccccccccccccceeeeccCcCccc-ccChhhhhcccccceeeeccCcccccc
Q 013440          335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKY-LFSFSMAKNLLRLQKVKVEDCDDLKMI  410 (443)
Q Consensus       335 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~~~~~~~~~~~L~~L~i~~C~~l~~~  410 (443)
                      ....+++|+.|+++++ .++......   ...+++|++|++++|.--.. ++.......+++|+.|++++| .++.+
T Consensus       420 ~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~  491 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHS-LLDISSEQL---FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSI  491 (606)
T ss_dssp             TTTTCTTCCEEECTTC-CCBTTCTTT---TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEE
T ss_pred             hhhCcccCCEEECCCC-ccCCcCHHH---HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCcc
Confidence            1233445555555543 222221111   23456666666666532221 122123456677777777666 34444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=2.6e-26  Score=234.39  Aligned_cols=357  Identities=17%  Similarity=0.081  Sum_probs=220.7

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCC
Q 013440           32 EETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLI  108 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~  108 (443)
                      ....++++++|++++|.+..+.+  +.++++|++|++++|..  ..+++..|.++++|++|++++|.++.+ +..++.++
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc--cccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            45677899999999998866643  33899999999999986  344444468899999999999998885 56788899


Q ss_pred             CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCC--EEeccCCccccc---------------
Q 013440          109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQ--LLDLSNCWWLEV---------------  168 (443)
Q Consensus       109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~--~L~l~~~~~~~~---------------  168 (443)
                      +|++|++++|.+..  ++.+..+++|++|++++|.++.+ |..++.+++|+  .|++++|.+.+.               
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l  209 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF  209 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred             cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence            99999999998876  35555688888888888888755 44567777777  666665433221               


Q ss_pred             -----------------------------------------------------------cchHHhhcCCCCcEEEccCCC
Q 013440          169 -----------------------------------------------------------IAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       169 -----------------------------------------------------------~~~~~l~~l~~L~~L~l~~~~  189 (443)
                                                                                 ++...++.+++|++|++++|.
T Consensus       210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  289 (606)
T 3t6q_A          210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH  289 (606)
T ss_dssp             TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred             CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence                                                                       122224556677777777766


Q ss_pred             CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC-cc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP-DF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (443)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (443)
                      +...+         ..++.+++|++|++++|.+..++. .+ .+++|+.+++..+..........+..+++|+.|++++|
T Consensus       290 l~~lp---------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          290 LSELP---------SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             CSCCC---------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             cCCCC---------hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            55322         345666667777777666654432 22 33566666554332221111111234444444444444


Q ss_pred             cccccccc------------------------cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccC
Q 013440          268 KKVSILQE------------------------NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSE  323 (443)
Q Consensus       268 ~~~~~~~~------------------------~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  323 (443)
                      .+......                        +..+..+ ++|+.|++++|......+...  ...+++|++|++++|. 
T Consensus       361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~-  436 (606)
T 3t6q_A          361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSP--FQNLHLLKVLNLSHSL-  436 (606)
T ss_dssp             CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCT--TTTCTTCCEEECTTCC-
T ss_pred             ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchh--hhCcccCCEEECCCCc-
Confidence            43222111                        1122222 555566665554332222110  2356777777777773 


Q ss_pred             ceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeecc
Q 013440          324 ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED  403 (443)
Q Consensus       324 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~  403 (443)
                      ++...    ......+++|++|+++++. ++............+++|++|++++| .++.+++ ..+..+++|+.|++++
T Consensus       437 l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          437 LDISS----EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             CBTTC----TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCS
T ss_pred             cCCcC----HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCC
Confidence            22211    1245678999999999974 44321111111467899999999997 5666654 3457899999999999


Q ss_pred             Cccccccc
Q 013440          404 CDDLKMII  411 (443)
Q Consensus       404 C~~l~~~~  411 (443)
                      + +++.++
T Consensus       510 N-~l~~~~  516 (606)
T 3t6q_A          510 N-RLTSSS  516 (606)
T ss_dssp             S-CCCGGG
T ss_pred             C-ccCcCC
Confidence            8 454443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.8e-26  Score=235.65  Aligned_cols=139  Identities=27%  Similarity=0.307  Sum_probs=117.8

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-ccc
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS  103 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~  103 (443)
                      +...+. ...+++++|+++++.+..+++  ..++++|++|++++|..  ..++...|.++++|++|++++|.++.+ |..
T Consensus        23 l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           23 LSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             CSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             cccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            444443 456899999999999977775  33899999999999986  555555568999999999999999886 788


Q ss_pred             ccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccc
Q 013440          104 LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEV  168 (443)
Q Consensus       104 l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~  168 (443)
                      ++.+++|++|++++|.+..  +..++++++|++|++++|.++  .+|..++++++|++|++++|.+.+.
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            9999999999999999887  377999999999999999987  5789999999999999999765443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.3e-26  Score=242.49  Aligned_cols=352  Identities=18%  Similarity=0.120  Sum_probs=193.0

Q ss_pred             cCCCCeEEeCCCCCCC-CCCCcC-C-CCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc-ccccc-ccCCCC
Q 013440           35 IQKDPIAISLPHRDIQ-ELPERL-Q-CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSS-LGRLIN  109 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~-~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~p~~-l~~l~~  109 (443)
                      .++++++|++.+|.+. .+|... . +++|+.|++++|.. ...+|.. +.++++|++|++++|.+. .+|.. +..+++
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~  344 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRG  344 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE-EECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC-CCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence            4455666666655552 444333 2 35555555555543 2233332 244555555555555444 34433 444444


Q ss_pred             CcEEEecCCCC-------------------------CC--cccccC--CCCCCEEEcCCCCCC-CCchhhcCCCCCCEEe
Q 013440          110 LQTLCLDWCEL-------------------------AD--IAAIGQ--LKKLEILSLAYSNIN-QLPVEIGQLTRLQLLD  159 (443)
Q Consensus       110 L~~L~l~~~~l-------------------------~~--~~~~~~--l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~  159 (443)
                      |++|++++|.+                         ..  +..+..  +++|++|++++|.++ .+|..+.++++|+.|+
T Consensus       345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  424 (768)
T 3rgz_A          345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH  424 (768)
T ss_dssp             CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred             CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence            44444444443                         32  222222  455666666666555 4555666666666666


Q ss_pred             ccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-ccccCcEE
Q 013440          160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-VSVELQRY  237 (443)
Q Consensus       160 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l  237 (443)
                      +++|.+.+.+|.. +..+++|+.|++++|.+....+        ..++.+++|++|++++|.+. .+|..+ .+++|+.+
T Consensus       425 Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          425 LSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIP--------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             CCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             CcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCC--------HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence            6666555555554 5666666666666666554433        55666667777777766664 444444 44667776


Q ss_pred             EEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc------------
Q 013440          238 KIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD------------  305 (443)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~------------  305 (443)
                      ++..+..... .+..+..+++|+.|++++|.+.+.+  +..+..+ ++|+.|++++|.....++..+.            
T Consensus       496 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~  571 (768)
T 3rgz_A          496 SLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNI--PAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA  571 (768)
T ss_dssp             ECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred             EccCCccCCc-CChHHhcCCCCCEEECCCCcccCcC--CHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence            6654433221 1233456667777777776664443  2333333 6677777666543322221110            


Q ss_pred             -------------------------------------------------------cCCCCCCccEEEEecccCceeeccc
Q 013440          306 -------------------------------------------------------DGEGFPRLKRLLVTDCSEILHIVGS  330 (443)
Q Consensus       306 -------------------------------------------------------~~~~l~~L~~L~l~~~~~l~~~~~~  330 (443)
                                                                             ..+.+++|++|+++++.--..++  
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--  649 (768)
T 3rgz_A          572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--  649 (768)
T ss_dssp             SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC--
Confidence                                                                   01235667777777774222222  


Q ss_pred             ccccccCccCcccceecccccccc-ccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCccccc
Q 013440          331 VRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM  409 (443)
Q Consensus       331 ~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~  409 (443)
                         ...+.++.|+.|+++++ .++ .+|..    .+.+++|+.|+++++.--..+|  ....++++|+.|+++++.--..
T Consensus       650 ---~~l~~l~~L~~L~Ls~N-~l~g~ip~~----l~~L~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          650 ---KEIGSMPYLFILNLGHN-DISGSIPDE----VGDLRGLNILDLSSNKLDGRIP--QAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             ---GGGGGCTTCCEEECCSS-CCCSCCCGG----GGGCTTCCEEECCSSCCEECCC--GGGGGCCCCSEEECCSSEEEEE
T ss_pred             ---HHHhccccCCEEeCcCC-ccCCCCChH----HhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECcCCccccc
Confidence               24566778888888875 343 34432    4567888888888854444554  3457788888888888865555


Q ss_pred             cccC
Q 013440          410 IIGP  413 (443)
Q Consensus       410 ~~~~  413 (443)
                      +|..
T Consensus       720 iP~~  723 (768)
T 3rgz_A          720 IPEM  723 (768)
T ss_dssp             CCSS
T ss_pred             CCCc
Confidence            5543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=7e-27  Score=230.28  Aligned_cols=360  Identities=18%  Similarity=0.167  Sum_probs=259.0

Q ss_pred             hhhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cc
Q 013440           26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PS  102 (443)
Q Consensus        26 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~  102 (443)
                      ++...+.  ..+++++|+++++.++.+++  ..++++|++|++++|.. ...++...|.++++|++|++++|.++.+ |.
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~   97 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETG   97 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred             CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChh
Confidence            3455555  55889999999999977643  33899999999999986 4566666678999999999999999875 78


Q ss_pred             cccCCCCCcEEEecCCCCCC--ccc--ccCCCCCCEEEcCCCCCCCC-chh-hcCCCCCCEEeccCCccccccchHHhhc
Q 013440          103 SLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL-PVE-IGQLTRLQLLDLSNCWWLEVIAPNVISK  176 (443)
Q Consensus       103 ~l~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~  176 (443)
                      .++.+++|++|++++|.+..  +..  ++.+++|++|++++|.++.+ |.. +.++++|+.|++++|.+....+.. +..
T Consensus        98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~  176 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLN  176 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGG
T ss_pred             hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhc
Confidence            89999999999999999987  444  88999999999999999866 554 789999999999997766555543 455


Q ss_pred             C--CCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCC-CCCcc----ccccCcEEEEEecCCCCC--
Q 013440          177 L--SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI-LPPDF----VSVELQRYKIRIGDGPED--  247 (443)
Q Consensus       177 l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~----~~~~L~~l~l~~~~~~~~--  247 (443)
                      +  .+|+.++++.|.+...............+..+++|++|++++|.+.. .+..+    ..++|+.+++..+.....  
T Consensus       177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  256 (455)
T 3v47_A          177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF  256 (455)
T ss_dssp             GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred             cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence            4  68899999988876554321111222234566889999999998743 22222    126777777643211110  


Q ss_pred             -------CCCchhc--ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEE
Q 013440          248 -------EFDPLLV--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLV  318 (443)
Q Consensus       248 -------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l  318 (443)
                             .....+.  ..++|+.|++++|.+....  +..+..+ ++|++|++++|......+..+.   .+++|++|++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L  330 (455)
T 3v47_A          257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSHF-TDLEQLTLAQNEINKIDDNAFW---GLTHLLKLNL  330 (455)
T ss_dssp             TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTTC-TTCCEEECTTSCCCEECTTTTT---TCTTCCEEEC
T ss_pred             chhhhccCcccccccccccCceEEEecCccccccc--hhhcccC-CCCCEEECCCCcccccChhHhc---CcccCCEEEC
Confidence                   0000111  2368999999998775443  2334433 8999999999877655454444   7899999999


Q ss_pred             ecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccce
Q 013440          319 TDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK  398 (443)
Q Consensus       319 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~  398 (443)
                      ++| .++.+.    ......+++|+.|+++++ .++.+....   ...+++|++|++++ ..++.+++. ....+++|+.
T Consensus       331 s~N-~l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~  399 (455)
T 3v47_A          331 SQN-FLGSID----SRMFENLDKLEVLDLSYN-HIRALGDQS---FLGLPNLKELALDT-NQLKSVPDG-IFDRLTSLQK  399 (455)
T ss_dssp             CSS-CCCEEC----GGGGTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCS-SCCSCCCTT-TTTTCTTCCE
T ss_pred             CCC-ccCCcC----hhHhcCcccCCEEECCCC-cccccChhh---ccccccccEEECCC-CccccCCHh-HhccCCcccE
Confidence            998 444442    124567899999999986 566663322   35689999999988 467777653 4578899999


Q ss_pred             eeeccCcc
Q 013440          399 VKVEDCDD  406 (443)
Q Consensus       399 L~i~~C~~  406 (443)
                      |++++++-
T Consensus       400 L~l~~N~l  407 (455)
T 3v47_A          400 IWLHTNPW  407 (455)
T ss_dssp             EECCSSCB
T ss_pred             EEccCCCc
Confidence            99987643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=7e-27  Score=244.52  Aligned_cols=350  Identities=17%  Similarity=0.111  Sum_probs=201.8

Q ss_pred             hccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCc
Q 013440           33 ETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ  111 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~  111 (443)
                      ...++++++|++++|.+....+...+++|++|++++|.. ...++.  +.++++|++|++++|.++. +|..++.+++|+
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  250 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF-STGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELK  250 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCC-CSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred             hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcC-CCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence            445566666666666664444445666666666666665 333333  4566666666666666653 555666666666


Q ss_pred             EEEecCCCCCC-cccccCCCCCCEEEcCCCCCC-CCchhhcCC-CCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440          112 TLCLDWCELAD-IAAIGQLKKLEILSLAYSNIN-QLPVEIGQL-TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (443)
Q Consensus       112 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (443)
                      +|++++|.+.. ++.. .+++|++|++++|.++ .+|..+... ++|+.|++++|.+.+.+|.. ++.+++|++|++++|
T Consensus       251 ~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          251 LLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSN  328 (768)
T ss_dssp             EEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSS
T ss_pred             EEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCC
Confidence            66666666544 2222 5555666666655555 455554443 55555555555544444443 455555555555555


Q ss_pred             CCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-c---------------------------cccCcEEEE
Q 013440          189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-V---------------------------SVELQRYKI  239 (443)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~---------------------------~~~L~~l~l  239 (443)
                      .+....+       ...++.+++|++|++++|.+. .+|..+ .                           .++|+.+++
T Consensus       329 ~l~~~ip-------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L  401 (768)
T 3rgz_A          329 NFSGELP-------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL  401 (768)
T ss_dssp             EEEEECC-------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred             cccCcCC-------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence            4432222       022445555555555555442 344333 1                           234444444


Q ss_pred             EecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEe
Q 013440          240 RIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVT  319 (443)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~  319 (443)
                      ..+.... .....+..+++|+.|++++|.+.+..  +..+..+ ++|+.|++++|.....++..+.   .+++|++|+++
T Consensus       402 ~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~  474 (768)
T 3rgz_A          402 QNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTI--PSSLGSL-SKLRDLKLWLNMLEGEIPQELM---YVKTLETLILD  474 (768)
T ss_dssp             CSSEEEE-ECCGGGGGCTTCCEEECCSSEEESCC--CGGGGGC-TTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECC
T ss_pred             CCCcccc-ccCHHHhcCCCCCEEECcCCcccCcc--cHHHhcC-CCCCEEECCCCcccCcCCHHHc---CCCCceEEEec
Confidence            2221110 11133466777777777777664433  2334433 7788888887776655555554   67888888888


Q ss_pred             cccCceeecccccccccCccCcccceecccccccc-ccccccccccccccccceeeeccCcCcccccChhhhhcccccce
Q 013440          320 DCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK  398 (443)
Q Consensus       320 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~  398 (443)
                      +|.--..++     .....+++|+.|+++++. ++ .++..    .+.+++|++|++++|.-...+|  ..+..+++|+.
T Consensus       475 ~N~l~~~~p-----~~l~~l~~L~~L~L~~N~-l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~  542 (768)
T 3rgz_A          475 FNDLTGEIP-----SGLSNCTNLNWISLSNNR-LTGEIPKW----IGRLENLAILKLSNNSFSGNIP--AELGDCRSLIW  542 (768)
T ss_dssp             SSCCCSCCC-----GGGGGCTTCCEEECCSSC-CCSCCCGG----GGGCTTCCEEECCSSCCEEECC--GGGGGCTTCCE
T ss_pred             CCcccCcCC-----HHHhcCCCCCEEEccCCc-cCCcCChH----HhcCCCCCEEECCCCcccCcCC--HHHcCCCCCCE
Confidence            874322222     245677888899998864 43 33332    3568899999999875554555  34578899999


Q ss_pred             eeeccCccccccccC
Q 013440          399 VKVEDCDDLKMIIGP  413 (443)
Q Consensus       399 L~i~~C~~l~~~~~~  413 (443)
                      |++.+|.--..+|..
T Consensus       543 L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAA  557 (768)
T ss_dssp             EECCSSEEESBCCGG
T ss_pred             EECCCCccCCcCChH
Confidence            999988655555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.9e-26  Score=240.64  Aligned_cols=308  Identities=13%  Similarity=0.088  Sum_probs=187.0

Q ss_pred             CcHHHHhcCCCCCEEEcCCCcccc------------------cccccc--CCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440           76 VSDHFFEGMEGLKVLQFPGIGSSS------------------LPSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (443)
Q Consensus        76 ~~~~~~~~l~~L~~L~l~~~~~~~------------------~p~~l~--~l~~L~~L~l~~~~l~~--~~~~~~l~~L~  133 (443)
                      +|.. +.++++|++|++++|.++.                  +|+.++  .+++|++|++++|.+..  |..++++++|+
T Consensus       440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            4554 4678888888888888776                  777776  78888888888887555  56777788888


Q ss_pred             EEEcCCCC-CCC--CchhhcCCC-------CCCEEeccCCccccccch-HHhhcCCCCcEEEccCCCCCcccccCCCchh
Q 013440          134 ILSLAYSN-INQ--LPVEIGQLT-------RLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNAS  202 (443)
Q Consensus       134 ~L~l~~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  202 (443)
                      +|++++|. ++.  +|..+++++       +|+.|++++|.+. .+|. ..++.+++|+.|++++|.+...         
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l---------  588 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL---------  588 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC---------
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc---------
Confidence            88888876 663  666555444       7777777776554 6665 2267777777777777765421         


Q ss_pred             hhhccCCCCCCEEEeecCCCCCCCCcc-cccc-CcEEEE-------------------------EecCCCCCCC--Cchh
Q 013440          203 LVELERLTELTTLEIEVPDAEILPPDF-VSVE-LQRYKI-------------------------RIGDGPEDEF--DPLL  253 (443)
Q Consensus       203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~l~l-------------------------~~~~~~~~~~--~~~~  253 (443)
                       ..++.+++|+.|++++|.+..+|..+ .+++ |+.|++                         ..+.......  ...+
T Consensus       589 -p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          589 -EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             -CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             -hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence             13444445555555555544444433 2233 444444                         3322211100  0001


Q ss_pred             c--ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCcccccccccc-----CCCCCCccEEEEecccCcee
Q 013440          254 V--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-----GEGFPRLKRLLVTDCSEILH  326 (443)
Q Consensus       254 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~  326 (443)
                      .  .+++|+.|++++|.+.   ..+..+...+++|+.|+|++|... .++.....     ...|++|++|+|++| .++.
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~  742 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS  742 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC
T ss_pred             ccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCcc
Confidence            1  2236666777766553   233344434478888888877554 34332220     012348888888888 4554


Q ss_pred             eccccccccc--CccCcccceeccccccccccccccccccccccccceeeeccCc------CcccccChhhhhcccccce
Q 013440          327 IVGSVRRVRC--EVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR------KLKYLFSFSMAKNLLRLQK  398 (443)
Q Consensus       327 ~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~------~l~~~~~~~~~~~~~~L~~  398 (443)
                      ++     ...  ..+++|+.|+++++ .++.++..    ...+++|+.|++++++      -...+|  ..+.++++|+.
T Consensus       743 lp-----~~l~~~~l~~L~~L~Ls~N-~L~~lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~  810 (876)
T 4ecn_A          743 LS-----DDFRATTLPYLSNMDVSYN-CFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQ  810 (876)
T ss_dssp             CC-----GGGSTTTCTTCCEEECCSS-CCSSCCCG----GGGCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCE
T ss_pred             ch-----HHhhhccCCCcCEEEeCCC-CCCccchh----hhcCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCCE
Confidence            43     122  37888999998885 56665443    3568889999887633      233343  33567889999


Q ss_pred             eeeccCccccccccC
Q 013440          399 VKVEDCDDLKMIIGP  413 (443)
Q Consensus       399 L~i~~C~~l~~~~~~  413 (443)
                      |++++|.- ..++..
T Consensus       811 L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          811 LQIGSNDI-RKVDEK  824 (876)
T ss_dssp             EECCSSCC-CBCCSC
T ss_pred             EECCCCCC-CccCHh
Confidence            99988854 766655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=3.2e-26  Score=232.05  Aligned_cols=367  Identities=17%  Similarity=0.093  Sum_probs=224.5

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-cc
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SS  103 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~  103 (443)
                      +.+.+. ...+.+++|+++++.++.+++  ..++++|++|++++|..  ..++...|.++++|++|++++|.++.++ ..
T Consensus        19 l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             CSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            344443 356789999999999977764  34899999999999985  5666666789999999999999998865 67


Q ss_pred             ccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCC
Q 013440          104 LGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ  179 (443)
Q Consensus       104 l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  179 (443)
                      ++.+++|++|++++|.+.. + ..++++++|++|++++|.++.  +|..++++++|++|++++|.+....+. .++.+++
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  174 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQ  174 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG-GGHHHHT
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH-Hccchhc
Confidence            9999999999999999888 3 468999999999999998884  788999999999999999765443333 2556666


Q ss_pred             C----cEEEccCCCCCcccccCC---------------------------------------------------------
Q 013440          180 L----EELYMGNGFSGWEKVEGG---------------------------------------------------------  198 (443)
Q Consensus       180 L----~~L~l~~~~~~~~~~~~~---------------------------------------------------------  198 (443)
                      |    +.+++++|.+....+...                                                         
T Consensus       175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l  254 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  254 (570)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred             cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence            6    667776665443322110                                                         


Q ss_pred             ----------------CchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCC-------------
Q 013440          199 ----------------SNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEF-------------  249 (443)
Q Consensus       199 ----------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-------------  249 (443)
                                      ....+..++.+++|++|++.+|.+..+|..+...+|+.+++..+.......             
T Consensus       255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~  334 (570)
T 2z63_A          255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS  334 (570)
T ss_dssp             GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred             cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcC
Confidence                            001112345567777888877777666655421155555554333221110             


Q ss_pred             -----CchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc-------------------
Q 013440          250 -----DPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD-------------------  305 (443)
Q Consensus       250 -----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-------------------  305 (443)
                           ......+++|+.|++++|.+......+..+..+ ++|++|++++|........ +.                   
T Consensus       335 n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             CBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred             CccccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence                 000034556666666665543222112222222 5556665555432221111 11                   


Q ss_pred             ---cCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccc--ccccccccccccccccceeeeccCcC
Q 013440          306 ---DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE--TICYSQLREDQSFSNLRIINVDSCRK  380 (443)
Q Consensus       306 ---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~L~~L~i~~c~~  380 (443)
                         ....+++|++|++++|. ++...    ......+++|+.|++++|. ++  .++..    ...+++|++|++++| .
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~p~~----~~~l~~L~~L~l~~n-~  481 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTH-TRVAF----NGIFNGLSSLEVLKMAGNS-FQENFLPDI----FTELRNLTFLDLSQC-Q  481 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSC-CEECC----TTTTTTCTTCCEEECTTCE-EGGGEECSC----CTTCTTCCEEECTTS-C
T ss_pred             chhhhhcCCCCCEEeCcCCc-ccccc----hhhhhcCCcCcEEECcCCc-Cccccchhh----hhcccCCCEEECCCC-c
Confidence               01234444444444442 11110    1123445666666666653 22  12211    345777777777775 4


Q ss_pred             cccccChhhhhcccccceeeeccCcccccccc
Q 013440          381 LKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG  412 (443)
Q Consensus       381 l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~  412 (443)
                      ++.+++ ..+..+++|+.|++++| +++.++.
T Consensus       482 l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~  511 (570)
T 2z63_A          482 LEQLSP-TAFNSLSSLQVLNMASN-QLKSVPD  511 (570)
T ss_dssp             CCEECT-TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             cccCCh-hhhhcccCCCEEeCCCC-cCCCCCH
Confidence            555533 23456778888888777 4555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.2e-26  Score=240.09  Aligned_cols=340  Identities=12%  Similarity=0.087  Sum_probs=255.6

Q ss_pred             hhccCCCCeEEeCCCCCCCC------------------CCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEE
Q 013440           32 EETIQKDPIAISLPHRDIQE------------------LPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL   90 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L   90 (443)
                      ..+.+++++.|++++|.+..                  +|...   ++++|+.|++++|.. ...+|.. +.++++|++|
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~-l~~L~~L~~L  520 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDF-LYDLPELQSL  520 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGG-GGGCSSCCEE
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHH-HhCCCCCCEE
Confidence            47788999999999999977                  78765   699999999999987 6788866 4899999999


Q ss_pred             EcCCCc-ccc--ccccccCCC-------CCcEEEecCCCCCC-cc--cccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440           91 QFPGIG-SSS--LPSSLGRLI-------NLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL  157 (443)
Q Consensus        91 ~l~~~~-~~~--~p~~l~~l~-------~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~  157 (443)
                      ++++|. ++.  +|..++.+.       +|++|++++|.+.. |.  .++++++|+.|++++|.++.+| .++++++|+.
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD  599 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence            999998 775  887776665       99999999999988 56  7999999999999999999998 8999999999


Q ss_pred             EeccCCccccccchHHhhcCCC-CcEEEccCCCCCcccccCCCchhhhhccCC--CCCCEEEeecCCCCCCCC----cc-
Q 013440          158 LDLSNCWWLEVIAPNVISKLSQ-LEELYMGNGFSGWEKVEGGSNASLVELERL--TELTTLEIEVPDAEILPP----DF-  229 (443)
Q Consensus       158 L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~----~~-  229 (443)
                      |++++|.+. .+|.. +..+++ |+.|++++|.+...+         ..+..+  ++|+.|++++|.+...+.    .. 
T Consensus       600 L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp---------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          600 LKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIP---------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             EECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCC---------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             EECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCc---------hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            999997765 78876 788998 999999999876332         344444  349999999998844322    21 


Q ss_pred             --ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHh-------hcccceeeccccCCcccc
Q 013440          230 --VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML-------LQRTEDLWLETLEGVQSV  300 (443)
Q Consensus       230 --~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~~L~~L~L~~~~~~~~~  300 (443)
                        ..++|+.|++..+...... ......+++|+.|++++|.+. .++  ......       +++|+.|+|++|... .+
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L~-~ip--~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l  743 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMT-SIP--ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL  743 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCCS-CCC--TTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred             cccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcCC-ccC--hHHhccccccccccCCccEEECCCCCCc-cc
Confidence              2257888888766555321 122346789999999998775 332  222211       248999999988655 45


Q ss_pred             ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccc-----cc-cccccccccccccccccceee
Q 013440          301 VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT-----NL-ETICYSQLREDQSFSNLRIIN  374 (443)
Q Consensus       301 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~l-~~~~~~~~~~~~~~~~L~~L~  374 (443)
                      +..+. ...+++|+.|+|++| .++.++     .....+++|+.|++++++     .+ ..++..    ...+++|++|+
T Consensus       744 p~~l~-~~~l~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~----l~~L~~L~~L~  812 (876)
T 4ecn_A          744 SDDFR-ATTLPYLSNMDVSYN-CFSSFP-----TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG----ITTCPSLIQLQ  812 (876)
T ss_dssp             CGGGS-TTTCTTCCEEECCSS-CCSSCC-----CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT----GGGCSSCCEEE
T ss_pred             hHHhh-hccCCCcCEEEeCCC-CCCccc-----hhhhcCCCCCEEECCCCCCcccccccccChHH----HhcCCCCCEEE
Confidence            54332 247899999999998 344333     245578999999997743     22 222221    45689999999


Q ss_pred             eccCcCcccccChhhhhcccccceeeeccCcc
Q 013440          375 VDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD  406 (443)
Q Consensus       375 i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~  406 (443)
                      +++|.- ..+|..    -+++|+.|++++|+-
T Consensus       813 Ls~N~L-~~Ip~~----l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          813 IGSNDI-RKVDEK----LTPQLYILDIADNPN  839 (876)
T ss_dssp             CCSSCC-CBCCSC----CCSSSCEEECCSCTT
T ss_pred             CCCCCC-CccCHh----hcCCCCEEECCCCCC
Confidence            998754 888753    236899999999863

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.9e-26  Score=236.01  Aligned_cols=340  Identities=11%  Similarity=0.110  Sum_probs=253.3

Q ss_pred             hhccCCCCeEEeCCCCCCCC------------------CCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEE
Q 013440           32 EETIQKDPIAISLPHRDIQE------------------LPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL   90 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L   90 (443)
                      ..+.++++++|++++|.+..                  +|...   ++++|++|++++|.. ...+|..+ .++++|++|
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L  278 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFL-KALPEMQLI  278 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTT-TTCSSCCEE
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHH-hcCCCCCEE
Confidence            47788999999999999977                  77655   599999999999987 67788664 899999999


Q ss_pred             EcCCCc-ccc--ccccccCC------CCCcEEEecCCCCCC-cc--cccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCE
Q 013440           91 QFPGIG-SSS--LPSSLGRL------INLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQL  157 (443)
Q Consensus        91 ~l~~~~-~~~--~p~~l~~l------~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~  157 (443)
                      ++++|. ++.  +|..++.+      ++|++|++++|.+.. +.  .++++++|++|++++|.++ .+| .+.++++|+.
T Consensus       279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~  357 (636)
T 4eco_A          279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS  357 (636)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred             ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence            999998 874  88888776      999999999999988 56  7999999999999999999 888 8999999999


Q ss_pred             EeccCCccccccchHHhhcCCC-CcEEEccCCCCCcccccCCCchhhhhccCC--CCCCEEEeecCCCCC-CCCcc----
Q 013440          158 LDLSNCWWLEVIAPNVISKLSQ-LEELYMGNGFSGWEKVEGGSNASLVELERL--TELTTLEIEVPDAEI-LPPDF----  229 (443)
Q Consensus       158 L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~----  229 (443)
                      |++++|.+. .+|.. +..+++ |++|++++|.+... +        ..+..+  ++|++|++++|.+.. .|..+    
T Consensus       358 L~L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~~l-p--------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          358 LNLAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLKYI-P--------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             EECCSSEEE-ECCTT-SEEECTTCCEEECCSSCCSSC-C--------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             EECCCCccc-cccHh-hhhhcccCcEEEccCCcCccc-c--------hhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            999997655 78776 788998 99999999987733 2        344443  489999999988844 33322    


Q ss_pred             ----ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHh-------hcccceeeccccCCcc
Q 013440          230 ----VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML-------LQRTEDLWLETLEGVQ  298 (443)
Q Consensus       230 ----~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~~L~~L~L~~~~~~~  298 (443)
                          ..++|+.+++..+..... ....+..+++|+.|++++|.+. .++.  .....       +++|+.|++++|... 
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  501 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPK--NSLKDENENFKNTYLLTSIDLRFNKLT-  501 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCS--SSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred             cccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC-CcCH--HHhccccccccccCCccEEECcCCcCC-
Confidence                235788888866555432 1122445788999999998775 3322  22111       138999999888765 


Q ss_pred             ccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccc-----c-ccccccccccccccccccce
Q 013440          299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT-----N-LETICYSQLREDQSFSNLRI  372 (443)
Q Consensus       299 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~~~~~~~~~~~~~~~L~~  372 (443)
                      .++..+. ...+++|++|++++|. ++.++     .....+++|+.|+++++.     . ...++..    ...+++|++
T Consensus       502 ~lp~~~~-~~~l~~L~~L~Ls~N~-l~~ip-----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~----l~~l~~L~~  570 (636)
T 4eco_A          502 KLSDDFR-ATTLPYLVGIDLSYNS-FSKFP-----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG----ITLCPSLTQ  570 (636)
T ss_dssp             BCCGGGS-TTTCTTCCEEECCSSC-CSSCC-----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT----GGGCSSCCE
T ss_pred             ccChhhh-hccCCCcCEEECCCCC-CCCcC-----hhhhcCCCCCEEECCCCcccccCcccccChHH----HhcCCCCCE
Confidence            4544332 2378899999999883 43343     244568899999996533     1 2223322    356889999


Q ss_pred             eeeccCcCcccccChhhhhcccccceeeeccCcc
Q 013440          373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD  406 (443)
Q Consensus       373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~  406 (443)
                      |++++|.- +.+|.. +   .++|+.|++++++-
T Consensus       571 L~Ls~N~l-~~ip~~-~---~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          571 LQIGSNDI-RKVNEK-I---TPNISVLDIKDNPN  599 (636)
T ss_dssp             EECCSSCC-CBCCSC-C---CTTCCEEECCSCTT
T ss_pred             EECCCCcC-CccCHh-H---hCcCCEEECcCCCC
Confidence            99988654 777643 2   27899999988853

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=7.4e-26  Score=218.39  Aligned_cols=304  Identities=12%  Similarity=0.142  Sum_probs=220.2

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~  133 (443)
                      .+++++.|+++++..  ..+|..++.++++|++|++++|.++.++ ..+..+++|++|++++|.+..  +..++++++|+
T Consensus        43 ~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            567888888888874  7778777788888888888888887755 467888888888888888777  35578888888


Q ss_pred             EEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCC
Q 013440          134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL  212 (443)
Q Consensus       134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  212 (443)
                      +|++++|.++.+|.. +.++++|+.|++++|.+....+. .+..+++|++|++++|.+...           .++.+++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-----------~~~~l~~L  188 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-----------DLSLIPSL  188 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC-----------CGGGCTTC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc-----------cccccccc
Confidence            888888888888776 47888888888888655443333 377888888888888876542           24567788


Q ss_pred             CEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeecc
Q 013440          213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE  292 (443)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~  292 (443)
                      +.|++++|.+..++   ..++|+.+++..+......    ....++|+.|++++|.+...    .++... ++|++|+++
T Consensus       189 ~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~Ls  256 (390)
T 3o6n_A          189 FHANVSYNLLSTLA---IPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDT----AWLLNY-PGLVEVDLS  256 (390)
T ss_dssp             SEEECCSSCCSEEE---CCSSCSEEECCSSCCCEEE----CCCCSSCCEEECCSSCCCCC----GGGGGC-TTCSEEECC
T ss_pred             ceeecccccccccC---CCCcceEEECCCCeeeecc----ccccccccEEECCCCCCccc----HHHcCC-CCccEEECC
Confidence            88888888775543   2357777777544433221    13457888899998776432    234433 889999999


Q ss_pred             ccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccce
Q 013440          293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI  372 (443)
Q Consensus       293 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~  372 (443)
                      +|......+..+.   .+++|++|+++++ .++.++     .....+|+|+.|+++++ .++.++..    ...+++|++
T Consensus       257 ~n~l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~  322 (390)
T 3o6n_A          257 YNELEKIMYHPFV---KMQRLERLYISNN-RLVALN-----LYGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN  322 (390)
T ss_dssp             SSCCCEEESGGGT---TCSSCCEEECCSS-CCCEEE-----CSSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred             CCcCCCcChhHcc---ccccCCEEECCCC-cCcccC-----cccCCCCCCCEEECCCC-cceecCcc----ccccCcCCE
Confidence            8876555454444   7899999999988 455443     13357889999999986 56666543    356889999


Q ss_pred             eeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440          373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      |++++|+ ++.++    ...+++|+.|++.+++
T Consensus       323 L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          323 LYLDHNS-IVTLK----LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred             EECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence            9998864 66664    3567889999997753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1.9e-25  Score=212.01  Aligned_cols=287  Identities=15%  Similarity=0.107  Sum_probs=202.7

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR  106 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~  106 (443)
                      +...+....++++++|++++|.+..++....+++|++|++++|..  ..++.  +.++++|++|++++|.++.++. +..
T Consensus        56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~  130 (347)
T 4fmz_A           56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LAN  130 (347)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred             cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hcc
Confidence            445566788899999999999998888877999999999999985  55553  6899999999999999998877 889


Q ss_pred             CCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440          107 LINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (443)
Q Consensus       107 l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (443)
                      +++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|+.|++++|.+ ..++.  +..+++|+.+++
T Consensus       131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l  206 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP--LASLTSLHYFTA  206 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG--GGGCTTCCEEEC
T ss_pred             CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc--ccCCCccceeec
Confidence            9999999999996444 7779999999999999999987765 88999999999999754 44544  688999999999


Q ss_pred             cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEc
Q 013440          186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK  265 (443)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  265 (443)
                      ++|.+....          .++.+++|++|++++|.+..++....+++|+.+++..+.....   +.+..+         
T Consensus       207 ~~n~l~~~~----------~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l---------  264 (347)
T 4fmz_A          207 YVNQITDIT----------PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI---NAVKDL---------  264 (347)
T ss_dssp             CSSCCCCCG----------GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGTTC---------
T ss_pred             ccCCCCCCc----------hhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC---hhHhcC---------
Confidence            998775432          2788999999999999987766522345555555533322221   122333         


Q ss_pred             CccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccce
Q 013440          266 GIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL  345 (443)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L  345 (443)
                                        ++|+.|++++|.... ++.    ...+++|++|++++|. ++...    ......+++|+.|
T Consensus       265 ------------------~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~L~~n~-l~~~~----~~~l~~l~~L~~L  316 (347)
T 4fmz_A          265 ------------------TKLKMLNVGSNQISD-ISV----LNNLSQLNSLFLNNNQ-LGNED----MEVIGGLTNLTTL  316 (347)
T ss_dssp             ------------------TTCCEEECCSSCCCC-CGG----GGGCTTCSEEECCSSC-CCGGG----HHHHHTCTTCSEE
T ss_pred             ------------------CCcCEEEccCCccCC-Chh----hcCCCCCCEEECcCCc-CCCcC----hhHhhccccCCEE
Confidence                              455555555553222 211    2245666666666652 22111    1123445666666


Q ss_pred             eccccccccccccccccccccccccceeeeccC
Q 013440          346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSC  378 (443)
Q Consensus       346 ~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c  378 (443)
                      ++++|+ ++.++.     ...+++|++|++++|
T Consensus       317 ~L~~n~-l~~~~~-----~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          317 FLSQNH-ITDIRP-----LASLSKMDSADFANQ  343 (347)
T ss_dssp             ECCSSS-CCCCGG-----GGGCTTCSEESSSCC
T ss_pred             EccCCc-cccccC-----hhhhhccceeehhhh
Confidence            666653 433322     244666666666664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=2e-26  Score=232.56  Aligned_cols=148  Identities=19%  Similarity=0.273  Sum_probs=89.5

Q ss_pred             cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCc
Q 013440           35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQ  111 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~  111 (443)
                      ..+.+++|++++|.+..+++  ..++++|++|++++|..  ..++...|.++++|++|++++|.++.++.. ++.+++|+
T Consensus        24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            34567777777777755532  23677777777777764  344433356677777777777777665543 66777777


Q ss_pred             EEEecCCCCCC---cccccCCCCCCEEEcCCCC-CCCCc-hhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440          112 TLCLDWCELAD---IAAIGQLKKLEILSLAYSN-INQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (443)
Q Consensus       112 ~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (443)
                      +|++++|.+..   +..++++++|++|++++|. ++.+| ..+.++++|+.|++++|.+.+..|.. ++.+++|++|++
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l  179 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTL  179 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEE
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEec
Confidence            77777777653   3556667777777777765 44554 34666667777766665544444432 333333333333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=223.60  Aligned_cols=143  Identities=15%  Similarity=0.203  Sum_probs=75.7

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~  118 (443)
                      ++++++++.++.+|.... ++|+.|++++|..  ..++...|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            355555555555554333 5566666666553  334433345566666666666665553 445555666666666666


Q ss_pred             CCCCcccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCCC--cEEEccCCCC
Q 013440          119 ELADIAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFS  190 (443)
Q Consensus       119 ~l~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  190 (443)
                      .+..++.. .+++|++|++++|.++.  +|..++++++|++|++++|.+.+.    .+..+++|  ++|++++|.+
T Consensus        80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTT
T ss_pred             ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccc
Confidence            55552222 55666666666665553  345555666666666655443321    13444444  5555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=1.2e-25  Score=229.53  Aligned_cols=110  Identities=20%  Similarity=0.219  Sum_probs=82.4

Q ss_pred             hccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCC
Q 013440           33 ETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLIN  109 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~  109 (443)
                      ...++++++|++++|.+..+++.  .++++|++|++++|..  ..+++..|.++++|++|++++|.++.++ ..++.+++
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc--cccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence            55678888888888888666442  3788888888888875  4443333578888888888888887755 56788888


Q ss_pred             CcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCC
Q 013440          110 LQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQ  144 (443)
Q Consensus       110 L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~  144 (443)
                      |++|++++|.+..   +..++++++|++|++++|.++.
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            8888888888764   5677888888888888877663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=8.7e-26  Score=227.82  Aligned_cols=152  Identities=18%  Similarity=0.131  Sum_probs=127.9

Q ss_pred             EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCC
Q 013440           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE  119 (443)
Q Consensus        41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~  119 (443)
                      +.+..++.+..+|... .+.|++|++++|..  ..++...|.++++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus         9 ~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGL-TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             eEECCCCccccccccC-CCCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            3566777888888755 38999999999996  4444444689999999999999998865 679999999999999999


Q ss_pred             CCC-c-ccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440          120 LAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       120 l~~-~-~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      +.. + ..++++++|++|++++|.++.  .|..+.++++|+.|++++|...+.++...+..+++|++|++++|.+....+
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            988 4 559999999999999999984  567799999999999999887777875558899999999999998766443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=6.8e-25  Score=217.38  Aligned_cols=314  Identities=17%  Similarity=0.081  Sum_probs=210.1

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~  118 (443)
                      +.++..+..+..+|... .+.++.|++++|..  ..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            45666666666666533 35778888888775  445444467788888888888877764 667778888888888888


Q ss_pred             CCCC-c-ccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440          119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      .+.. + ..++++++|++|++++|.++.+ +..+.++++|+.|++++|.+....+. .+..+++|++|++++|.+.....
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccCh
Confidence            7777 3 4567788888888888877744 45577788888888887655443343 36777888888888877665443


Q ss_pred             cCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL  273 (443)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (443)
                              ..++.+++|+.|++.+|.+..++...  .+++|+.+++..+....... .......+|+.|++++|.+.. +
T Consensus       170 --------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~  239 (477)
T 2id5_A          170 --------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNLTA-V  239 (477)
T ss_dssp             --------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-TTTTTTCCCSEEEEESSCCCS-C
T ss_pred             --------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-cccccCccccEEECcCCcccc-c
Confidence                    55777788888888888776655433  34677777775433222111 111233488899999886642 2


Q ss_pred             cccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccc
Q 013440          274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL  353 (443)
Q Consensus       274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  353 (443)
                        +......+++|+.|++++|.........+   ..+++|++|++.++ .++.+.    ......+++|+.|+++++ .+
T Consensus       240 --~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~N-~l  308 (477)
T 2id5_A          240 --PYLAVRHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGG-QLAVVE----PYAFRGLNYLRVLNVSGN-QL  308 (477)
T ss_dssp             --CHHHHTTCTTCCEEECCSSCCCEECTTSC---TTCTTCCEEECCSS-CCSEEC----TTTBTTCTTCCEEECCSS-CC
T ss_pred             --CHHHhcCccccCeeECCCCcCCccChhhc---cccccCCEEECCCC-ccceEC----HHHhcCcccCCEEECCCC-cC
Confidence              22222234889999999887554433333   37889999999988 344432    124567889999999885 67


Q ss_pred             cccccccccccccccccceeeeccCcCc
Q 013440          354 ETICYSQLREDQSFSNLRIINVDSCRKL  381 (443)
Q Consensus       354 ~~~~~~~~~~~~~~~~L~~L~i~~c~~l  381 (443)
                      +.++...   ...+++|++|++.+++--
T Consensus       309 ~~~~~~~---~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          309 TTLEESV---FHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             SCCCGGG---BSCGGGCCEEECCSSCEE
T ss_pred             ceeCHhH---cCCCcccCEEEccCCCcc
Confidence            7665432   245788999999886543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=4.6e-25  Score=224.39  Aligned_cols=304  Identities=12%  Similarity=0.143  Sum_probs=206.7

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~  133 (443)
                      .+.+++.++++++..  ..+|..+|.++++|++|++++|.++.++ ..++.+++|++|++++|.+..  +..++++++|+
T Consensus        49 ~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            567788888888774  6777777788888888888888887754 467788888888888888777  35567888888


Q ss_pred             EEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCC
Q 013440          134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL  212 (443)
Q Consensus       134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  212 (443)
                      +|++++|.++.+|.. +.++++|+.|++++|.+.+..+. .+..+++|+.|++++|.+...           .++.+++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-----------~~~~l~~L  194 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-----------DLSLIPSL  194 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC-----------CGGGCTTC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc-----------Chhhhhhh
Confidence            888888888877766 47888888888888665444443 367788888888888776542           24556778


Q ss_pred             CEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeecc
Q 013440          213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE  292 (443)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~  292 (443)
                      +.|++++|.+..++   ...+|+.+++..+......    ....++|+.|++++|.+..    +.++..+ ++|+.|+++
T Consensus       195 ~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~L~~n~l~~----~~~l~~l-~~L~~L~Ls  262 (597)
T 3oja_B          195 FHANVSYNLLSTLA---IPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTD----TAWLLNY-PGLVEVDLS  262 (597)
T ss_dssp             SEEECCSSCCSEEE---CCTTCSEEECCSSCCCEEE----CSCCSCCCEEECCSSCCCC----CGGGGGC-TTCSEEECC
T ss_pred             hhhhcccCcccccc---CCchhheeeccCCcccccc----cccCCCCCEEECCCCCCCC----ChhhccC-CCCCEEECC
Confidence            88888877765443   2356777776544332211    1233577888888876643    2333333 778888888


Q ss_pred             ccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccce
Q 013440          293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI  372 (443)
Q Consensus       293 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~  372 (443)
                      +|......+..+.   .+++|++|+|++| .++.++     .....+|+|+.|+++++ .++.++..    ...+++|+.
T Consensus       263 ~N~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~-----~~~~~l~~L~~L~Ls~N-~l~~i~~~----~~~l~~L~~  328 (597)
T 3oja_B          263 YNELEKIMYHPFV---KMQRLERLYISNN-RLVALN-----LYGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN  328 (597)
T ss_dssp             SSCCCEEESGGGT---TCSSCCEEECTTS-CCCEEE-----CSSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred             CCccCCCCHHHhc---CccCCCEEECCCC-CCCCCC-----cccccCCCCcEEECCCC-CCCccCcc----cccCCCCCE
Confidence            7766555444444   7788888888877 444443     13355788888888875 55555433    345788888


Q ss_pred             eeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440          373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      |++++|. ++.++    ...+++|+.|++.+++
T Consensus       329 L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          329 LYLDHNS-IVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred             EECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence            8888754 55554    3556788888887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=1.2e-24  Score=219.90  Aligned_cols=148  Identities=19%  Similarity=0.256  Sum_probs=107.8

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTL  113 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L  113 (443)
                      .+...++++++++.++.+|.... ++|+.|++++|..  ..++...|.++++|++|++++|.++.+ |..+..+++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            34445788888888887776443 7888888888885  555554568888888888888888875 5668888888888


Q ss_pred             EecCCCCCCcccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCCEEeccCCccccccchHHhhcCCCC--cEEEccCCC
Q 013440          114 CLDWCELADIAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGF  189 (443)
Q Consensus       114 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~  189 (443)
                      ++++|.+..++.. .+++|++|++++|.++.++  ..++++++|+.|++++|.+... .   +..+++|  ++|++++|.
T Consensus       106 ~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          106 DVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             ECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESS
T ss_pred             ECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeeccc
Confidence            8888888773222 7888888888888887653  6788888888888888655432 1   3444555  888887776


Q ss_pred             C
Q 013440          190 S  190 (443)
Q Consensus       190 ~  190 (443)
                      +
T Consensus       181 l  181 (562)
T 3a79_B          181 Y  181 (562)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=3.2e-25  Score=224.66  Aligned_cols=346  Identities=16%  Similarity=0.090  Sum_probs=222.8

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCC
Q 013440           32 EETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLI  108 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~  108 (443)
                      ....++++++|++++|.+..+++.  .++++|++|++++|..  ..++...|.++++|++|++++|.++.++. .++.++
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  124 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  124 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC--CccCHhhhcCccccccccccccccccCCCccccccc
Confidence            456678999999999999777643  3899999999999985  55555556899999999999999988765 588999


Q ss_pred             CCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCc-hhhcCCCCC----CEEeccCCccccccc----------
Q 013440          109 NLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRL----QLLDLSNCWWLEVIA----------  170 (443)
Q Consensus       109 ~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~----------  170 (443)
                      +|++|++++|.+..   +..++++++|++|++++|.++.++ ..+..+++|    +.+++++|.+....+          
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~  204 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK  204 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence            99999999998775   677889999999999999887543 345555555    555555543221111          


Q ss_pred             ----------------------------------------------------------------------hHHhhcCCCC
Q 013440          171 ----------------------------------------------------------------------PNVISKLSQL  180 (443)
Q Consensus       171 ----------------------------------------------------------------------~~~l~~l~~L  180 (443)
                                                                                            ...+..+++|
T Consensus       205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L  284 (570)
T 2z63_A          205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV  284 (570)
T ss_dssp             EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred             EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence                                                                                  0113445666


Q ss_pred             cEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc---------------------cccccCcEEEE
Q 013440          181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD---------------------FVSVELQRYKI  239 (443)
Q Consensus       181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~~L~~l~l  239 (443)
                      +.|++++|.+...+         ..+..+ +|++|++.+|.+..+|..                     ..+++|+.+++
T Consensus       285 ~~L~l~~~~l~~l~---------~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l  354 (570)
T 2z63_A          285 SSFSLVSVTIERVK---------DFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL  354 (570)
T ss_dssp             SEEEEESCEECSCC---------BCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred             cEEEecCccchhhh---------hhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence            66666666544322         222233 444444444443333321                     12234444444


Q ss_pred             EecCCCCCCC-Cch-----------------------hcccccceeEEEcCccccccccccchhhHhhcccceeeccccC
Q 013440          240 RIGDGPEDEF-DPL-----------------------LVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE  295 (443)
Q Consensus       240 ~~~~~~~~~~-~~~-----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  295 (443)
                      ..+....... ...                       +..+++|+.|++.+|......+ ...+.. +++|++|++++|.
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~-l~~L~~L~l~~n~  432 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLS-LRNLIYLDISHTH  432 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT-SCTTTT-CTTCCEEECTTSC
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc-hhhhhc-CCCCCEEeCcCCc
Confidence            2222111000 011                       3445566666666655432221 112222 3788888888886


Q ss_pred             CccccccccccCCCCCCccEEEEecccCc-eeecccccccccCccCcccceeccccccccccccccccccccccccceee
Q 013440          296 GVQSVVHELDDGEGFPRLKRLLVTDCSEI-LHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIIN  374 (443)
Q Consensus       296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~  374 (443)
                      .....+..+.   .+++|++|++.+|.-. ..++     .....+++|+.|++++| .++.+....   ...+++|++|+
T Consensus       433 l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~p-----~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~  500 (570)
T 2z63_A          433 TRVAFNGIFN---GLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQC-QLEQLSPTA---FNSLSSLQVLN  500 (570)
T ss_dssp             CEECCTTTTT---TCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEE
T ss_pred             ccccchhhhh---cCCcCcEEECcCCcCccccch-----hhhhcccCCCEEECCCC-ccccCChhh---hhcccCCCEEe
Confidence            6555444443   7999999999999522 1222     35678899999999997 566653322   35689999999


Q ss_pred             eccCcCcccccChhhhhcccccceeeeccCc
Q 013440          375 VDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       375 i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      +++| .++.+++ ..+..+++|+.|++.+++
T Consensus       501 l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          501 MASN-QLKSVPD-GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCC-cCCCCCH-HHhhcccCCcEEEecCCc
Confidence            9986 6777765 345789999999998865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=230.02  Aligned_cols=163  Identities=21%  Similarity=0.287  Sum_probs=131.2

Q ss_pred             hhhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cc
Q 013440           26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PS  102 (443)
Q Consensus        26 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~  102 (443)
                      ++...|.  .++++++|++++|.++.+.+  ..++++|++|++++|.. ...++...|.++++|++|++++|.+..+ |.
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            3455555  67899999999999976643  33999999999999965 5666555579999999999999999875 88


Q ss_pred             cccCCCCCcEEEecCCCCCC--ccc--ccCCCCCCEEEcCCCCCCCC--chhhcCCCCCCEEeccCCccccccchHHhhc
Q 013440          103 SLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCWWLEVIAPNVISK  176 (443)
Q Consensus       103 ~l~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  176 (443)
                      .++.+++|++|++++|.+.+  +..  ++++++|++|++++|.++.+  +..++++++|+.|++++|.+....+.. +..
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~  170 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEP  170 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-ccc
Confidence            89999999999999999876  443  89999999999999998854  356899999999999997765555543 444


Q ss_pred             C--CCCcEEEccCCCCCc
Q 013440          177 L--SQLEELYMGNGFSGW  192 (443)
Q Consensus       177 l--~~L~~L~l~~~~~~~  192 (443)
                      +  ++|+.|+++.|.+..
T Consensus       171 l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             HHHCSSCCCEECCSBSCC
T ss_pred             ccCCccceEECCCCcccc
Confidence            4  667777777665544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=9.2e-25  Score=210.70  Aligned_cols=303  Identities=18%  Similarity=0.183  Sum_probs=241.6

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L  110 (443)
                      -.+.+++++++.++.++.+|...  .+++|++|++++|..  ..++...|.++++|++|++++|.++.++ ..++.+++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            35689999999999999998754  899999999999985  5566555789999999999999999865 558999999


Q ss_pred             cEEEecCCCCCC-cc-cccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          111 QTLCLDWCELAD-IA-AIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       111 ~~L~l~~~~l~~-~~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      ++|++++|.+.. +. .++++++|++|++++|.++.++. .+.++++|+.|++++|.+. .++   +..+++|+.+++++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSY  195 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccc
Confidence            999999999988 44 46899999999999999987654 5899999999999996644 344   56789999999999


Q ss_pred             CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (443)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (443)
                      |.+.             .+...++|++|++++|.+..++.. ..++|+.+++..+.....   ..+..+++|+.|++++|
T Consensus       196 n~l~-------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n  258 (390)
T 3o6n_A          196 NLLS-------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN  258 (390)
T ss_dssp             SCCS-------------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS
T ss_pred             cccc-------------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc---HHHcCCCCccEEECCCC
Confidence            8763             344556899999999999877654 458999999976655543   55788999999999998


Q ss_pred             cccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceec
Q 013440          268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL  347 (443)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  347 (443)
                      .+....  +..+... ++|+.|++++|.... ++..   ...+++|++|++++| .++.++     .....+++|+.|++
T Consensus       259 ~l~~~~--~~~~~~l-~~L~~L~L~~n~l~~-~~~~---~~~l~~L~~L~L~~n-~l~~~~-----~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          259 ELEKIM--YHPFVKM-QRLERLYISNNRLVA-LNLY---GQPIPTLKVLDLSHN-HLLHVE-----RNQPQFDRLENLYL  325 (390)
T ss_dssp             CCCEEE--SGGGTTC-SSCCEEECCSSCCCE-EECS---SSCCTTCCEEECCSS-CCCCCG-----GGHHHHTTCSEEEC
T ss_pred             cCCCcC--hhHcccc-ccCCEEECCCCcCcc-cCcc---cCCCCCCCEEECCCC-cceecC-----ccccccCcCCEEEC
Confidence            875432  2334433 899999999986544 3333   237899999999999 455543     23467899999999


Q ss_pred             cccccccccccccccccccccccceeeeccCc
Q 013440          348 MFLTNLETICYSQLREDQSFSNLRIINVDSCR  379 (443)
Q Consensus       348 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  379 (443)
                      +++ .++.++      ...+++|++|++++++
T Consensus       326 ~~N-~i~~~~------~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          326 DHN-SIVTLK------LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CSS-CCCCCC------CCTTCCCSEEECCSSC
T ss_pred             CCC-ccceeC------chhhccCCEEEcCCCC
Confidence            996 466553      4568999999999854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=9.4e-24  Score=218.43  Aligned_cols=155  Identities=19%  Similarity=0.150  Sum_probs=112.1

Q ss_pred             cCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCc
Q 013440           35 IQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQ  111 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~  111 (443)
                      ..+++++|+++++.+..+++.  .++++|++|++++|..  ..++...|.++++|++|++++|.++.+|. .++.+++|+
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence            457888888888888777753  3788888888888875  44444456788888888888888888775 478888888


Q ss_pred             EEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhh--cCCCCcEEEcc
Q 013440          112 TLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS--KLSQLEELYMG  186 (443)
Q Consensus       112 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~  186 (443)
                      +|++++|.+..  +..++++++|++|++++|.++.. |..++++++|+.|++++|.+.+..+. .+.  .+++|++|+++
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELS  179 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECT
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH-HhhccccccccEEECC
Confidence            88888888777  35678888888888888877744 44577788888888887654333332 222  34667777776


Q ss_pred             CCCCCc
Q 013440          187 NGFSGW  192 (443)
Q Consensus       187 ~~~~~~  192 (443)
                      +|.+..
T Consensus       180 ~n~l~~  185 (680)
T 1ziw_A          180 SNQIKE  185 (680)
T ss_dssp             TCCCCC
T ss_pred             CCcccc
Confidence            665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=2.2e-24  Score=212.34  Aligned_cols=346  Identities=14%  Similarity=0.118  Sum_probs=253.6

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc-cc-cccccCCCCCcEEEecC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SL-PSSLGRLINLQTLCLDW  117 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~-p~~l~~l~~L~~L~l~~  117 (443)
                      +.++..+++++.+|.  -.++|++|++++|..  ..++...|.++++|++|++++|.+. .+ +..+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            456777788888887  348999999999986  4454444689999999999999986 44 56789999999999999


Q ss_pred             CCCCC--cccccCCCCCCEEEcCCCCCCC-Cchh--hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      |.+..  +..++++++|++|++++|.++. .+..  +.++++|+.|++++|.+.+..|...+..+++|++|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            99887  5789999999999999999985 4444  88999999999999877666676557899999999999998876


Q ss_pred             ccccCCCchhhhhccCC--CCCCEEEeecCCCCCCCCcc----------ccccCcEEEEEecCCCCCCCCchhc---ccc
Q 013440          193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEILPPDF----------VSVELQRYKIRIGDGPEDEFDPLLV---KSE  257 (443)
Q Consensus       193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~l~l~~~~~~~~~~~~~~~---~~~  257 (443)
                      ..+        ..+..+  .+|+.|++++|.+..++...          ..++|+.+++..+...... ...+.   ...
T Consensus       169 ~~~--------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~~~  239 (455)
T 3v47_A          169 ICE--------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-AKRFFDAIAGT  239 (455)
T ss_dssp             CCT--------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-HHHHHHHTTTC
T ss_pred             cCh--------hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc-hhhhhcccccc
Confidence            554        344443  68899999999987766442          2267888887544332211 01111   237


Q ss_pred             cceeEEEcCccccccccc--------cchhhH-hhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeec
Q 013440          258 ASRLMMLKGIKKVSILQE--------NDGTKM-LLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIV  328 (443)
Q Consensus       258 ~L~~L~l~~~~~~~~~~~--------~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  328 (443)
                      +++.+++++|........        ...+.. ..++|+.|+++++......+..+.   .+++|++|++++|. ++.+.
T Consensus       240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~-l~~~~  315 (455)
T 3v47_A          240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS---HFTDLEQLTLAQNE-INKID  315 (455)
T ss_dssp             CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT---TCTTCCEEECTTSC-CCEEC
T ss_pred             ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc---cCCCCCEEECCCCc-ccccC
Confidence            888888887644221100        001111 126899999999887666555444   89999999999984 44432


Q ss_pred             ccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCcccc
Q 013440          329 GSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLK  408 (443)
Q Consensus       329 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~  408 (443)
                          ......+++|+.|+++++ .++.+....   ...+++|++|++++| .++.+++ ..+..+++|+.|++.++ +++
T Consensus       316 ----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~  384 (455)
T 3v47_A          316 ----DNAFWGLTHLLKLNLSQN-FLGSIDSRM---FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLK  384 (455)
T ss_dssp             ----TTTTTTCTTCCEEECCSS-CCCEECGGG---GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCS
T ss_pred             ----hhHhcCcccCCEEECCCC-ccCCcChhH---hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccc
Confidence                124567899999999986 566664332   356899999999986 5666654 33577999999999997 677


Q ss_pred             ccccC
Q 013440          409 MIIGP  413 (443)
Q Consensus       409 ~~~~~  413 (443)
                      .++..
T Consensus       385 ~~~~~  389 (455)
T 3v47_A          385 SVPDG  389 (455)
T ss_dssp             CCCTT
T ss_pred             cCCHh
Confidence            66654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=3.3e-24  Score=210.37  Aligned_cols=309  Identities=13%  Similarity=0.071  Sum_probs=230.2

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440           32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~  111 (443)
                      +.+.++++++|+++++.+..+|....+++|+.|++++|..  ..++   +..+++|++|++++|.++.++  ++.+++|+
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~  109 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLT  109 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred             ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence            5567799999999999998888767999999999999986  4454   578999999999999999885  88999999


Q ss_pred             EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      +|++++|.+..+. ++.+++|++|++++|.++.++  ++++++|+.|++++|...+.++   +..+++|+.|++++|.+.
T Consensus       110 ~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          110 YLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             EEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc
Confidence            9999999988853 889999999999999999874  8899999999999987777774   678999999999999875


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS  271 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (443)
                      ..           .++.+++|+.|++++|.+..++ ...+++|+.+++..+.....   + +..+++|+.|++++|.+.+
T Consensus       184 ~l-----------~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~i---p-~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          184 EL-----------DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEI---D-VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CC-----------CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSC
T ss_pred             ee-----------ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCccccc---C-ccccCCCCEEEeeCCcCCC
Confidence            42           1678899999999999998774 22568999999976655542   2 5788999999999988754


Q ss_pred             cccccchhhHh------hcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeeccccc---ccccCccCcc
Q 013440          272 ILQENDGTKML------LQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR---RVRCEVFPLL  342 (443)
Q Consensus       272 ~~~~~~~~~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L  342 (443)
                      . + ...+..+      ..+|+.|++++|.....++     .+.|++|+.|++++|..++.++....   .......++|
T Consensus       248 ~-~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L  320 (457)
T 3bz5_A          248 L-D-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL  320 (457)
T ss_dssp             C-C-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred             c-C-HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence            3 2 1111111      0144556666665444443     34788999999999987766652100   0022334455


Q ss_pred             cceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440          343 EALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL  384 (443)
Q Consensus       343 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~  384 (443)
                      +.|+++++ .++.++      ...+++|+.|++++ ..++++
T Consensus       321 ~~L~L~~N-~l~~l~------l~~l~~L~~L~l~~-N~l~~l  354 (457)
T 3bz5_A          321 VYLYLNNT-ELTELD------VSHNTKLKSLSCVN-AHIQDF  354 (457)
T ss_dssp             CEEECTTC-CCSCCC------CTTCTTCSEEECCS-SCCCBC
T ss_pred             CEEECCCC-cccccc------cccCCcCcEEECCC-CCCCCc
Confidence            55555443 333331      45677888888876 455554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=1.7e-23  Score=216.54  Aligned_cols=151  Identities=23%  Similarity=0.225  Sum_probs=118.6

Q ss_pred             hccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCC
Q 013440           33 ETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLIN  109 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~  109 (443)
                      ...++++++|+++++.+..+++..  ++++|++|++++|..  ..++...|.++++|++|++++|.++.++ ..++.+++
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--CccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            566789999999999987665433  899999999999985  6777766789999999999999998866 67889999


Q ss_pred             CcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-h--cCCCCCCEEeccCCccccccchHHhhcCCCCcEEE
Q 013440          110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-I--GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY  184 (443)
Q Consensus       110 L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  184 (443)
                      |++|++++|.+..  +..++++++|++|++++|.++.++.. +  ..+++|+.|++++|.+.+..+. .+..+.+|+.+.
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  201 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLF  201 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEE
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhh
Confidence            9999999999877  56788899999999999998876553 3  3678999999999765544443 355554444444


Q ss_pred             cc
Q 013440          185 MG  186 (443)
Q Consensus       185 l~  186 (443)
                      +.
T Consensus       202 l~  203 (680)
T 1ziw_A          202 LN  203 (680)
T ss_dssp             CT
T ss_pred             cc
Confidence            33

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.5e-24  Score=217.08  Aligned_cols=303  Identities=18%  Similarity=0.179  Sum_probs=241.1

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCc
Q 013440           35 IQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQ  111 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~  111 (443)
                      .+.+++.+++.++.+..+|+..  .+++|+.|++++|..  ..++...|..+++|++|++++|.++.+| ..++.+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            4578999999999998888754  799999999999986  5555545689999999999999999865 4579999999


Q ss_pred             EEEecCCCCCC-cc-cccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440          112 TLCLDWCELAD-IA-AIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (443)
Q Consensus       112 ~L~l~~~~l~~-~~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (443)
                      +|++++|.+.. +. .++++++|++|++++|.++.++. .+.++++|+.|++++|.+. .++   +..+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhcccC
Confidence            99999999988 44 46899999999999999986654 6899999999999997654 344   467899999999998


Q ss_pred             CCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcc
Q 013440          189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK  268 (443)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (443)
                      .+.             .+....+|+.|++++|.+..++.. ..++|+.|++..+.....   ..+..+++|+.|++++|.
T Consensus       203 ~l~-------------~l~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          203 LLS-------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             CCS-------------EEECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred             ccc-------------cccCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc
Confidence            763             345567899999999999777655 347899999976655442   557889999999999998


Q ss_pred             ccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440          269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM  348 (443)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  348 (443)
                      +.+..  +..+..+ ++|+.|+|++|.... ++..   ...+++|++|+|++|. ++.++     .....+++|+.|+++
T Consensus       266 l~~~~--~~~~~~l-~~L~~L~Ls~N~l~~-l~~~---~~~l~~L~~L~Ls~N~-l~~i~-----~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          266 LEKIM--YHPFVKM-QRLERLYISNNRLVA-LNLY---GQPIPTLKVLDLSHNH-LLHVE-----RNQPQFDRLENLYLD  332 (597)
T ss_dssp             CCEEE--SGGGTTC-SSCCEEECTTSCCCE-EECS---SSCCTTCCEEECCSSC-CCCCG-----GGHHHHTTCSEEECC
T ss_pred             cCCCC--HHHhcCc-cCCCEEECCCCCCCC-CCcc---cccCCCCcEEECCCCC-CCccC-----cccccCCCCCEEECC
Confidence            75543  2334443 899999999986544 4333   3378999999999994 44443     234678999999999


Q ss_pred             ccccccccccccccccccccccceeeeccCcC
Q 013440          349 FLTNLETICYSQLREDQSFSNLRIINVDSCRK  380 (443)
Q Consensus       349 ~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~  380 (443)
                      ++ .++.++      ...+++|+.|++++++-
T Consensus       333 ~N-~l~~~~------~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          333 HN-SIVTLK------LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             SS-CCCCCC------CCTTCCCSEEECCSSCE
T ss_pred             CC-CCCCcC------hhhcCCCCEEEeeCCCC
Confidence            96 455553      45689999999998653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=208.68  Aligned_cols=295  Identities=18%  Similarity=0.119  Sum_probs=233.2

Q ss_pred             ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L  110 (443)
                      ...+.++.|+++++.+..+++  +.++++|++|++++|..  ..+....|.++++|++|++++|.++.+|. .+..+++|
T Consensus        29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            456889999999999977754  33899999999999986  45544446899999999999999999875 47899999


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      ++|++++|.+..  +..+..+++|++|++++|.++.+ +..+.++++|+.|++++|.+ ..++...+..+++|+.|++++
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEES
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCC
Confidence            999999999887  47789999999999999999855 45689999999999999654 556665689999999999999


Q ss_pred             CCCCcccccCCCchhhhhccCCCCCCEEEeecCCC-CCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEc
Q 013440          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA-EILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK  265 (443)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  265 (443)
                      |.+.....        ..+..+++|++|++++|.. ..++... ...+|+.+++..+...... ...+..+++|+.|+++
T Consensus       186 n~i~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls  256 (477)
T 2id5_A          186 LNINAIRD--------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLS  256 (477)
T ss_dssp             CCCCEECT--------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECC
T ss_pred             CcCcEeCh--------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECC
Confidence            98876554        5688999999999998765 4555544 3369999999776554322 2346788999999999


Q ss_pred             CccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccce
Q 013440          266 GIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL  345 (443)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L  345 (443)
                      +|.+....  ...+.. +++|+.|++++|......+..+.   .+++|++|++++| .++.++.    .....+++|+.|
T Consensus       257 ~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~----~~~~~l~~L~~L  325 (477)
T 2id5_A          257 YNPISTIE--GSMLHE-LLRLQEIQLVGGQLAVVEPYAFR---GLNYLRVLNVSGN-QLTTLEE----SVFHSVGNLETL  325 (477)
T ss_dssp             SSCCCEEC--TTSCTT-CTTCCEEECCSSCCSEECTTTBT---TCTTCCEEECCSS-CCSCCCG----GGBSCGGGCCEE
T ss_pred             CCcCCccC--hhhccc-cccCCEEECCCCccceECHHHhc---CcccCCEEECCCC-cCceeCH----hHcCCCcccCEE
Confidence            98875332  222333 38999999999876665455444   8999999999998 4554431    234678999999


Q ss_pred             eccccc
Q 013440          346 SLMFLT  351 (443)
Q Consensus       346 ~l~~c~  351 (443)
                      ++++++
T Consensus       326 ~l~~N~  331 (477)
T 2id5_A          326 ILDSNP  331 (477)
T ss_dssp             ECCSSC
T ss_pred             EccCCC
Confidence            998764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=3.7e-23  Score=218.54  Aligned_cols=331  Identities=15%  Similarity=0.089  Sum_probs=215.5

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcc-ccc-cccccCCCCCcEEEecC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLGRLINLQTLCLDW  117 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~-p~~l~~l~~L~~L~l~~  117 (443)
                      +..+.+++++..+|.  ..++++.|++++|..  ..+....|.++++|++|++++|.. ..+ |..+..+++|++|++++
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            467778888888988  678999999999986  444444468999999999999954 455 67899999999999999


Q ss_pred             CCCCC--cccccCCCCCCEEEcCCCCCCC-Cchh--hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      |.+..  +..++++++|++|++++|.++. +|..  +.++++|++|++++|.+.+..+...++.+++|++|++++|.+..
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            99887  6889999999999999999884 5554  89999999999999877665554448999999999999998765


Q ss_pred             ccccCCCchhhhhccCC--CCCCEEEeecCCCCC-CCCcc-ccc------cCcEEEEEecCCCCCCC-------------
Q 013440          193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEI-LPPDF-VSV------ELQRYKIRIGDGPEDEF-------------  249 (443)
Q Consensus       193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~-~~~------~L~~l~l~~~~~~~~~~-------------  249 (443)
                      ..+        ..++.+  ++|+.|+++.|.+.. .+..+ .+.      .|+.+++..+.......             
T Consensus       163 ~~~--------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~  234 (844)
T 3j0a_A          163 VCE--------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF  234 (844)
T ss_dssp             CCS--------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred             eCH--------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence            543        333333  566666776665532 22211 111      25555553321110000             


Q ss_pred             ----------------------Cchhc--ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc
Q 013440          250 ----------------------DPLLV--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD  305 (443)
Q Consensus       250 ----------------------~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  305 (443)
                                            ...+.  ..++++.|++++|.+....  +..+.. +++|+.|++++|......+..+.
T Consensus       235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~  311 (844)
T 3j0a_A          235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN--SRVFET-LKDLKVLNLAYNKINKIADEAFY  311 (844)
T ss_dssp             EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC--SCCSSS-CCCCCEEEEESCCCCEECTTTTT
T ss_pred             ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC--hhhhhc-CCCCCEEECCCCcCCCCChHHhc
Confidence                                  00001  1256777777776553322  222222 36777777777665444443333


Q ss_pred             cCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCccccc
Q 013440          306 DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF  385 (443)
Q Consensus       306 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~  385 (443)
                         .+++|++|++++|. ++.+.    ......+++|+.|+++++ .++.++...   ...+++|++|+++++ .++.++
T Consensus       312 ---~l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~i~  378 (844)
T 3j0a_A          312 ---GLDNLQVLNLSYNL-LGELY----SSNFYGLPKVAYIDLQKN-HIAIIQDQT---FKFLEKLQTLDLRDN-ALTTIH  378 (844)
T ss_dssp             ---TCSSCCEEEEESCC-CSCCC----SCSCSSCTTCCEEECCSC-CCCCCCSSC---SCSCCCCCEEEEETC-CSCCCS
T ss_pred             ---CCCCCCEEECCCCC-CCccC----HHHhcCCCCCCEEECCCC-CCCccChhh---hcCCCCCCEEECCCC-CCCccc
Confidence               67777777777763 32221    123456677777777764 455444322   234667777777664 344432


Q ss_pred             ChhhhhcccccceeeeccC
Q 013440          386 SFSMAKNLLRLQKVKVEDC  404 (443)
Q Consensus       386 ~~~~~~~~~~L~~L~i~~C  404 (443)
                      .      +++|+.|++.++
T Consensus       379 ~------~~~L~~L~l~~N  391 (844)
T 3j0a_A          379 F------IPSIPDIFLSGN  391 (844)
T ss_dssp             S------CCSCSEEEEESC
T ss_pred             C------CCCcchhccCCC
Confidence            1      455556655544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.4e-22  Score=198.92  Aligned_cols=322  Identities=14%  Similarity=0.092  Sum_probs=234.9

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR  106 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~  106 (443)
                      +.+.+....++++++|++++|.+..++ ...+++|+.|++++|..  ..++   +.++++|++|++++|.++.+|  ++.
T Consensus        54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~  125 (457)
T 3bz5_A           54 ITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTKLD--VSQ  125 (457)
T ss_dssp             CCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred             cccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCeec--CCC
Confidence            444556788899999999999998875 66899999999999996  4444   588999999999999999886  889


Q ss_pred             CCCCcEEEecCCCCCCcccccCCCCCCEEEcCCC-CCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440          107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (443)
Q Consensus       107 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (443)
                      +++|++|++++|.+..+ .++.+++|++|++++| .+..+  .+..+++|+.|++++|.+ ..++   +..+++|+.|++
T Consensus       126 l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~---l~~l~~L~~L~l  198 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD---VSQNKLLNRLNC  198 (457)
T ss_dssp             CTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC---CTTCTTCCEEEC
T ss_pred             CCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec---cccCCCCCEEEC
Confidence            99999999999998885 3788999999999999 55555  478899999999999754 4465   578999999999


Q ss_pred             cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccce-----
Q 013440          186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASR-----  260 (443)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~-----  260 (443)
                      ++|.+...           .++.+++|++|++++|.+..+| ...+++|+.+++..+......    ...+++|+     
T Consensus       199 ~~N~l~~~-----------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~  262 (457)
T 3bz5_A          199 DTNNITKL-----------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCI  262 (457)
T ss_dssp             CSSCCSCC-----------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECT
T ss_pred             cCCcCCee-----------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEecc
Confidence            99987542           3678899999999999998887 336689999999665544322    23444444     


Q ss_pred             -----eEEEcCccccccccccchhhHhhcccceeeccccCCccccccc------cccCCCCCCccEEEEecccCceeecc
Q 013440          261 -----LMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHE------LDDGEGFPRLKRLLVTDCSEILHIVG  329 (443)
Q Consensus       261 -----~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~l~~~~~  329 (443)
                           .+++++|...+.++.    . .+++|+.|++++|.....++..      +. +..+++|++|+++++ .++.+  
T Consensus       263 ~n~L~~L~l~~n~~~~~~~~----~-~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~N-~l~~l--  333 (457)
T 3bz5_A          263 QTDLLEIDLTHNTQLIYFQA----E-GCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNT-ELTEL--  333 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEEC----T-TCTTCCCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCCEEECTTC-CCSCC--
T ss_pred             CCCCCEEECCCCccCCcccc----c-ccccCCEEECCCCcccceeccCCCcceEec-hhhcccCCEEECCCC-ccccc--
Confidence                 455555544333331    2 2389999999999876655431      11 345677777777776 33322  


Q ss_pred             cccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCccccc
Q 013440          330 SVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM  409 (443)
Q Consensus       330 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~  409 (443)
                           ....++.|+.|++++. .++.           ++.|+.|.+.+ ..+...      ..+..|..+++++-.--..
T Consensus       334 -----~l~~l~~L~~L~l~~N-~l~~-----------l~~L~~L~l~~-n~l~g~------~~~~~l~~l~l~~N~l~g~  389 (457)
T 3bz5_A          334 -----DVSHNTKLKSLSCVNA-HIQD-----------FSSVGKIPALN-NNFEAE------GQTITMPKETLTNNSLTIA  389 (457)
T ss_dssp             -----CCTTCTTCSEEECCSS-CCCB-----------CTTGGGSSGGG-TSEEEE------EEEEECCCBCCBTTBEEEE
T ss_pred             -----ccccCCcCcEEECCCC-CCCC-----------ccccccccccC-CcEEec------ceeeecCccccccCcEEEE
Confidence                 3567888888888874 3332           46677777655 233222      3566777787766532234


Q ss_pred             ccc
Q 013440          410 IIG  412 (443)
Q Consensus       410 ~~~  412 (443)
                      +|.
T Consensus       390 ip~  392 (457)
T 3bz5_A          390 VSP  392 (457)
T ss_dssp             CCT
T ss_pred             cCh
Confidence            443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=209.86  Aligned_cols=339  Identities=12%  Similarity=0.039  Sum_probs=229.3

Q ss_pred             cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440           35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  112 (443)
                      ..+++++|++++|.+..+++  ...+++|++|++++|..  ..++...|.++++|++|++++|.++.+|..  .+++|++
T Consensus        19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~   94 (520)
T 2z7x_B           19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH   94 (520)
T ss_dssp             CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred             ccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence            34789999999999977764  34889999999999986  455444468899999999999999888876  7899999


Q ss_pred             EEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCC--CEEeccCCcc--ccccchH-------------
Q 013440          113 LCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPN-------------  172 (443)
Q Consensus       113 L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~-------------  172 (443)
                      |++++|.+..   +..++++++|++|++++|.++.  ..+..+++|  +.|++++|.+  ....|..             
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            9999999875   4788899999999999988764  234555566  7777666544  2222211             


Q ss_pred             ------------------------------------------HhhcCC---------------------------CCcEE
Q 013440          173 ------------------------------------------VISKLS---------------------------QLEEL  183 (443)
Q Consensus       173 ------------------------------------------~l~~l~---------------------------~L~~L  183 (443)
                                                                .++.++                           +|++|
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                                                      011122                           34444


Q ss_pred             EccCCCCCcccccCCCchhhhhc-----cCCC--------------------------CCCEEEeecCCCCCCCCccccc
Q 013440          184 YMGNGFSGWEKVEGGSNASLVEL-----ERLT--------------------------ELTTLEIEVPDAEILPPDFVSV  232 (443)
Q Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~l-----~~l~--------------------------~L~~L~l~~~~~~~~~~~~~~~  232 (443)
                      ++++|.+.+..+        ..+     +.++                          +|+.|++++|.+...+....++
T Consensus       253 ~l~~n~l~~~~p--------~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~  324 (520)
T 2z7x_B          253 SISNVKLQGQLD--------FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS  324 (520)
T ss_dssp             EEEEEEEESCCC--------CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred             EeecccccCccc--------cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence            444443322111        112     3333                          3445555544443333112457


Q ss_pred             cCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCC
Q 013440          233 ELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPR  312 (443)
Q Consensus       233 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~  312 (443)
                      +|+.+++..+...... ...+..+++|+.|++++|.+......+..+.. +++|++|++++|.....++...  ...+++
T Consensus       325 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~--~~~l~~  400 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTV-FENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGD--CSWTKS  400 (520)
T ss_dssp             CCCEEECCSSCCCTTT-TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCS--CCCCTT
T ss_pred             cccEEEeECCccChhh-hhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccch--hccCcc
Confidence            8888888665544321 23457899999999999887542222333443 3899999999988766455431  237899


Q ss_pred             ccEEEEecccCceeecccccccccCcc-CcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhh
Q 013440          313 LKRLLVTDCSEILHIVGSVRRVRCEVF-PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK  391 (443)
Q Consensus       313 L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~  391 (443)
                      |++|++++|.--..++        ..+ ++|+.|+++++ +++.++..    ...+++|++|++++| .++.+|.. ...
T Consensus       401 L~~L~Ls~N~l~~~~~--------~~l~~~L~~L~Ls~N-~l~~ip~~----~~~l~~L~~L~L~~N-~l~~l~~~-~~~  465 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIF--------RCLPPRIKVLDLHSN-KIKSIPKQ----VVKLEALQELNVASN-QLKSVPDG-IFD  465 (520)
T ss_dssp             CCEEECCSSCCCGGGG--------GSCCTTCCEEECCSS-CCCCCCGG----GGGCTTCCEEECCSS-CCCCCCTT-TTT
T ss_pred             CCEEECcCCCCCcchh--------hhhcccCCEEECCCC-cccccchh----hhcCCCCCEEECCCC-cCCccCHH-Hhc
Confidence            9999999994222211        222 79999999996 67777654    346999999999996 77888753 457


Q ss_pred             cccccceeeeccCcc
Q 013440          392 NLLRLQKVKVEDCDD  406 (443)
Q Consensus       392 ~~~~L~~L~i~~C~~  406 (443)
                      .+++|+.|++.+++-
T Consensus       466 ~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          466 RLTSLQKIWLHTNPW  480 (520)
T ss_dssp             TCTTCCEEECCSSCB
T ss_pred             cCCcccEEECcCCCC
Confidence            899999999988753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=8.8e-23  Score=209.25  Aligned_cols=131  Identities=27%  Similarity=0.301  Sum_probs=114.6

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L  110 (443)
                      +.+..+++|++++|.++.+++.  .++++|++|++++|.+  ..++...|.++++|++|++++|.++.+|. .|.++++|
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            4567899999999999888753  4899999999999985  77777778999999999999999999774 58999999


Q ss_pred             cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccc
Q 013440          111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWL  166 (443)
Q Consensus       111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~  166 (443)
                      ++|++++|.+.. + ..++++++|++|++++|.++  .+|..+.++++|++|++++|.+.
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            999999999988 3 56899999999999999887  45778899999999999987543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=6e-23  Score=207.53  Aligned_cols=352  Identities=15%  Similarity=0.063  Sum_probs=238.2

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL  104 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l  104 (443)
                      +...+. ...+++++|++++|.+..+++  ..++++|++|++++|..  ..++...|.++++|++|++++|.++.+|.. 
T Consensus        43 L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-  118 (562)
T 3a79_B           43 LTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC-  118 (562)
T ss_dssp             CCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred             CccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence            444443 345899999999999988874  34899999999999986  555555568999999999999999999877 


Q ss_pred             cCCCCCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCC--CEEeccCCcc--ccccchHHhh--
Q 013440          105 GRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVIS--  175 (443)
Q Consensus       105 ~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~--  175 (443)
                       .+++|++|++++|.+..   +..++++++|++|++++|.++..  .+..+++|  +.|++++|.+  ....+.. +.  
T Consensus       119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l  194 (562)
T 3a79_B          119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQIP  194 (562)
T ss_dssp             -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEEC
T ss_pred             -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cccc
Confidence             89999999999999877   36899999999999999988742  34445555  8888887655  2222211 11  


Q ss_pred             ------------------------cCC-----------------------------------------------------
Q 013440          176 ------------------------KLS-----------------------------------------------------  178 (443)
Q Consensus       176 ------------------------~l~-----------------------------------------------------  178 (443)
                                              .++                                                     
T Consensus       195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  274 (562)
T 3a79_B          195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW  274 (562)
T ss_dssp             CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred             CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence                                    122                                                     


Q ss_pred             --CCcEEEccCCCCCcccccCCCc-----------------------hhhhhccCCCCCCEEEeecCCCCCCCCcccccc
Q 013440          179 --QLEELYMGNGFSGWEKVEGGSN-----------------------ASLVELERLTELTTLEIEVPDAEILPPDFVSVE  233 (443)
Q Consensus       179 --~L~~L~l~~~~~~~~~~~~~~~-----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  233 (443)
                        +|++|++++|.+....+.....                       .....+-...+|++|++++|.+...+....+++
T Consensus       275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~  354 (562)
T 3a79_B          275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS  354 (562)
T ss_dssp             TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred             cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence              3444444444433221100000                       000000011346666666666544332124578


Q ss_pred             CcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCc
Q 013440          234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRL  313 (443)
Q Consensus       234 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L  313 (443)
                      |+.+++..+..... ....+..+++|+.|++++|.+......+..+.. +++|+.|++++|.....++...  ...+++|
T Consensus       355 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L  430 (562)
T 3a79_B          355 FTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRT--CAWAESI  430 (562)
T ss_dssp             CCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCC--CCCCTTC
T ss_pred             ceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhh--hcCcccC
Confidence            88888865554432 123457889999999999877542222222333 3899999999988765444332  2378999


Q ss_pred             cEEEEecccCceeecccccccccCcc-CcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhc
Q 013440          314 KRLLVTDCSEILHIVGSVRRVRCEVF-PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKN  392 (443)
Q Consensus       314 ~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~  392 (443)
                      ++|++++|. ++..       ....+ ++|+.|+++++ +++.++..    ...+++|++|+++++ .++.+|.. ....
T Consensus       431 ~~L~l~~n~-l~~~-------~~~~l~~~L~~L~L~~N-~l~~ip~~----~~~l~~L~~L~L~~N-~l~~l~~~-~~~~  495 (562)
T 3a79_B          431 LVLNLSSNM-LTGS-------VFRCLPPKVKVLDLHNN-RIMSIPKD----VTHLQALQELNVASN-QLKSVPDG-VFDR  495 (562)
T ss_dssp             CEEECCSSC-CCGG-------GGSSCCTTCSEEECCSS-CCCCCCTT----TTSSCCCSEEECCSS-CCCCCCTT-STTT
T ss_pred             CEEECCCCC-CCcc-------hhhhhcCcCCEEECCCC-cCcccChh----hcCCCCCCEEECCCC-CCCCCCHH-HHhc
Confidence            999999994 3211       11233 69999999986 78877654    336899999999984 67788753 3578


Q ss_pred             ccccceeeeccCc
Q 013440          393 LLRLQKVKVEDCD  405 (443)
Q Consensus       393 ~~~L~~L~i~~C~  405 (443)
                      +++|+.|++.+++
T Consensus       496 l~~L~~L~l~~N~  508 (562)
T 3a79_B          496 LTSLQYIWLHDNP  508 (562)
T ss_dssp             CTTCCCEECCSCC
T ss_pred             CCCCCEEEecCCC
Confidence            8999999998875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=1.5e-22  Score=190.74  Aligned_cols=291  Identities=15%  Similarity=0.110  Sum_probs=175.3

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~  136 (443)
                      +++.++++++..  ..+|..+   .+.|++|++++|.++.++ ..+..+++|++|++++|.+..  +..++++++|++|+
T Consensus        34 ~l~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGL--KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCC--SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCc--cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            577777777764  5566543   357777788777777653 467777778888887777766  46677778888888


Q ss_pred             cCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (443)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (443)
                      +++|.++.+|..+.  ++|++|++++|.+ ..++...+..+++|+.|++++|.+.....      ....++.+ +|++|+
T Consensus       109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l-~L~~L~  178 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGF------EPGAFDGL-KLNYLR  178 (332)
T ss_dssp             CCSSCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGS------CTTSSCSC-CCSCCB
T ss_pred             CCCCcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCC------CcccccCC-ccCEEE
Confidence            88877777776554  6788888877544 34554446777888888887776643111      11345555 788888


Q ss_pred             eecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440          217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG  296 (443)
Q Consensus       217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (443)
                      +++|.+..+|.... +                         +|+.|++++|.+....  +..+..+ ++|+.|++++|..
T Consensus       179 l~~n~l~~l~~~~~-~-------------------------~L~~L~l~~n~i~~~~--~~~l~~l-~~L~~L~L~~N~l  229 (332)
T 2ft3_A          179 ISEAKLTGIPKDLP-E-------------------------TLNELHLDHNKIQAIE--LEDLLRY-SKLYRLGLGHNQI  229 (332)
T ss_dssp             CCSSBCSSCCSSSC-S-------------------------SCSCCBCCSSCCCCCC--TTSSTTC-TTCSCCBCCSSCC
T ss_pred             CcCCCCCccCcccc-C-------------------------CCCEEECCCCcCCccC--HHHhcCC-CCCCEEECCCCcC
Confidence            88887776665421 3                         3444444444332211  1112222 5666666666654


Q ss_pred             ccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccc---cccccccee
Q 013440          297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRED---QSFSNLRII  373 (443)
Q Consensus       297 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---~~~~~L~~L  373 (443)
                      ....+..+.   .+++|++|++++| .++.++     .....++.|+.|+++++ .++.++...+...   ..++.|+.|
T Consensus       230 ~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp-----~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          230 RMIENGSLS---FLPTLRELHLDNN-KLSRVP-----AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             CCCCTTGGG---GCTTCCEEECCSS-CCCBCC-----TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred             CcCChhHhh---CCCCCCEEECCCC-cCeecC-----hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccce
Confidence            433322232   5677777777776 344443     12455677777777764 5666654333211   125778888


Q ss_pred             eeccCcCcc-cccChhhhhcccccceeeeccCc
Q 013440          374 NVDSCRKLK-YLFSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       374 ~i~~c~~l~-~~~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      ++.+++... .+++ .....++.|+.+++.++.
T Consensus       300 ~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          300 SLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred             EeecCcccccccCc-ccccccchhhhhhccccc
Confidence            888876432 2332 445678888888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=6.3e-22  Score=186.37  Aligned_cols=291  Identities=16%  Similarity=0.145  Sum_probs=160.8

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~  136 (443)
                      +++.++++++..  ..+|..+   .+.+++|++++|.++.++. .++.+++|++|++++|.+..  +..++++++|++|+
T Consensus        32 ~l~~l~~~~~~l--~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCc--cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            566666666653  4455432   3567777777777766553 56677777777777777666  45667777777777


Q ss_pred             cCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (443)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (443)
                      +++|.++.+|..+.  ++|+.|++++|.+. .++...+..+++|+.|++++|.+.....      ....++.+++|++|+
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIR  177 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEE
T ss_pred             CCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCc------ChhhccCCCCcCEEE
Confidence            77777776666544  67777777775443 4444446777777777777776643211      124567777888888


Q ss_pred             eecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440          217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG  296 (443)
Q Consensus       217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (443)
                      +++|.+..+|.... ++|+.+                         ++++|.+....  +..+..+ ++|+.|++++|..
T Consensus       178 l~~n~l~~l~~~~~-~~L~~L-------------------------~l~~n~l~~~~--~~~~~~l-~~L~~L~Ls~n~l  228 (330)
T 1xku_A          178 IADTNITTIPQGLP-PSLTEL-------------------------HLDGNKITKVD--AASLKGL-NNLAKLGLSFNSI  228 (330)
T ss_dssp             CCSSCCCSCCSSCC-TTCSEE-------------------------ECTTSCCCEEC--TGGGTTC-TTCCEEECCSSCC
T ss_pred             CCCCccccCCcccc-ccCCEE-------------------------ECCCCcCCccC--HHHhcCC-CCCCEEECCCCcC
Confidence            88887776665421 344444                         44443332111  1112221 4555555555543


Q ss_pred             ccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccc---ccccccccee
Q 013440          297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII  373 (443)
Q Consensus       297 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~~~L~~L  373 (443)
                      ....+..+.   .+++|++|++++| .++.++     .....++.|+.|+++++ .++.++...+..   ....+.|+.+
T Consensus       229 ~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp-----~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l  298 (330)
T 1xku_A          229 SAVDNGSLA---NTPHLRELHLNNN-KLVKVP-----GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV  298 (330)
T ss_dssp             CEECTTTGG---GSTTCCEEECCSS-CCSSCC-----TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             ceeChhhcc---CCCCCCEEECCCC-cCccCC-----hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccce
Confidence            332222222   4556666666665 233332     12344566666666653 455554332211   1124667777


Q ss_pred             eeccCcCcc-cccChhhhhcccccceeeeccC
Q 013440          374 NVDSCRKLK-YLFSFSMAKNLLRLQKVKVEDC  404 (443)
Q Consensus       374 ~i~~c~~l~-~~~~~~~~~~~~~L~~L~i~~C  404 (443)
                      ++.+.+--. .+++ .....++.++.++++++
T Consensus       299 ~l~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          299 SLFSNPVQYWEIQP-STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             ECCSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred             EeecCcccccccCc-cccccccceeEEEeccc
Confidence            777655322 1222 33455677777777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=2.9e-21  Score=189.34  Aligned_cols=303  Identities=19%  Similarity=0.149  Sum_probs=184.4

Q ss_pred             CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l  115 (443)
                      +++++.|++++|.+..+|..  .++|+.|++++|..  ..++.    -.++|++|++++|.++.+| .++.+++|++|++
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l--~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL--KALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC--SCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCcCCccccc--cCCCcEEECCCCcc--CcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence            45677777777777666543  36777777777764  33332    1257778888888777777 4777788888888


Q ss_pred             cCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440          116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (443)
Q Consensus       116 ~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (443)
                      ++|.+.. +..   ..+|++|++++|.++.+| .++++++|+.|++++|.+. .+|.    ...+|++|++++|.+... 
T Consensus       161 ~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~n~l~~l-  230 (454)
T 1jl5_A          161 DNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNILEEL-  230 (454)
T ss_dssp             CSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSSC-
T ss_pred             CCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCC----CcCcccEEECcCCcCCcc-
Confidence            8877766 322   247788888888777776 5777888888888775543 3443    124777888877766421 


Q ss_pred             ccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccc
Q 013440          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ  274 (443)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  274 (443)
                               ..++.+++|++|++++|.+..+|.  ..++|+.+++..+......     ..+++|+.|++++|.+.+...
T Consensus       231 ---------p~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l~-----~~~~~L~~L~ls~N~l~~l~~  294 (454)
T 1jl5_A          231 ---------PELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLSE  294 (454)
T ss_dssp             ---------CCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEESC
T ss_pred             ---------cccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccccC-----cccCcCCEEECcCCccCcccC
Confidence                     236678888888888888877765  3478888888655444322     234778888888876643211


Q ss_pred             ccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccc
Q 013440          275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE  354 (443)
Q Consensus       275 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  354 (443)
                      .       .++|+.|++++|.... ++.      ..++|++|+++++ .++.++        ..+++|+.|+++++ .++
T Consensus       295 ~-------~~~L~~L~l~~N~l~~-i~~------~~~~L~~L~Ls~N-~l~~lp--------~~~~~L~~L~L~~N-~l~  350 (454)
T 1jl5_A          295 L-------PPNLYYLNASSNEIRS-LCD------LPPSLEELNVSNN-KLIELP--------ALPPRLERLIASFN-HLA  350 (454)
T ss_dssp             C-------CTTCCEEECCSSCCSE-ECC------CCTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCSS-CCS
T ss_pred             c-------CCcCCEEECcCCcCCc-ccC------CcCcCCEEECCCC-cccccc--------ccCCcCCEEECCCC-ccc
Confidence            1       1578888887765432 111      1247888888877 344332        23578888888875 555


Q ss_pred             ccccccccccccccccceeeeccCcCcccccC-hhhhhcc-------------cccceeeeccCc
Q 013440          355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNL-------------LRLQKVKVEDCD  405 (443)
Q Consensus       355 ~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~-------------~~L~~L~i~~C~  405 (443)
                      .++.       .+++|++|+++++. ++.++. ...+.++             ++|+.|+++++.
T Consensus       351 ~lp~-------~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          351 EVPE-------LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CCCC-------CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC---------------------
T ss_pred             cccc-------hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            5443       36788888887753 333221 0122334             678888887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=1.6e-21  Score=191.20  Aligned_cols=311  Identities=13%  Similarity=0.110  Sum_probs=208.9

Q ss_pred             CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l  115 (443)
                      .++++.|++++|.+..++...  ++|++|++++|..  ..+|.  +.++++|++|++++|.++.+|..+   .+|++|++
T Consensus       110 ~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L  180 (454)
T 1jl5_A          110 PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAA  180 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEEC
T ss_pred             cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEEC
Confidence            478999999999998776543  7999999999986  45773  689999999999999999888654   59999999


Q ss_pred             cCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      ++|.+..++.++++++|++|++++|.++.+|...   ++|+.|++++|.+. .+|.  ++.+++|++|++++|.+...+.
T Consensus       181 ~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCS
T ss_pred             cCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccc
Confidence            9999988557999999999999999998877543   58999999997554 7774  7899999999999998764321


Q ss_pred             cCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (443)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (443)
                                  .+++|++|++++|.+..+|..  .++|+.+++..+......     ...++|+.|++++|.+.+... 
T Consensus       255 ------------~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~i~~-  314 (454)
T 1jl5_A          255 ------------LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRSLCD-  314 (454)
T ss_dssp             ------------CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSEECC-
T ss_pred             ------------cccccCEEECCCCcccccCcc--cCcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCcccC-
Confidence                        247899999999999888764  488999999655443321     223789999999987744211 


Q ss_pred             cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccc
Q 013440          276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET  355 (443)
Q Consensus       276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  355 (443)
                            ..++|+.|++++|.... ++.      .+++|++|++++| .++.++      .  .+++|+.|+++++ .++.
T Consensus       315 ------~~~~L~~L~Ls~N~l~~-lp~------~~~~L~~L~L~~N-~l~~lp------~--~l~~L~~L~L~~N-~l~~  371 (454)
T 1jl5_A          315 ------LPPSLEELNVSNNKLIE-LPA------LPPRLERLIASFN-HLAEVP------E--LPQNLKQLHVEYN-PLRE  371 (454)
T ss_dssp             ------CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSS-CCSCCC------C--CCTTCCEEECCSS-CCSS
T ss_pred             ------CcCcCCEEECCCCcccc-ccc------cCCcCCEEECCCC-cccccc------c--hhhhccEEECCCC-CCCc
Confidence                  12589999999876543 333      4689999999998 455554      2  5789999999985 5555


Q ss_pred             cccccccccccc-------------cccceeeeccCcCcccccChhhhhcccccceeeeccCccccccc
Q 013440          356 ICYSQLREDQSF-------------SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII  411 (443)
Q Consensus       356 ~~~~~~~~~~~~-------------~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~  411 (443)
                      ++.-+. ....+             ++|+.|+++++ .++.++..   +  ++++.|.+.+|.-...++
T Consensus       372 l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~i---P--~sl~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          372 FPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDI---P--ESVEDLRMNSERVVDPYE  433 (454)
T ss_dssp             CCCCCT-TCCEEECCC-----------------------------------------------------
T ss_pred             CCCChH-HHHhhhhcccccccccccCcCCEEECCCC-cCCccccc---h--hhHhheeCcCcccCCccc
Confidence            321100 01222             78999999885 45443211   1  457778887775444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=1.3e-20  Score=193.18  Aligned_cols=149  Identities=19%  Similarity=0.180  Sum_probs=123.9

Q ss_pred             EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCC
Q 013440           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCE  119 (443)
Q Consensus        41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~  119 (443)
                      +.+-.+.++..+|... .+.+++|++++|.+  ..++...|.++++|++|++++|.++.+++ .|.++++|++|++++|.
T Consensus        35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCCCC-CcCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            4455555677777643 24799999999995  77777667999999999999999999764 68999999999999999


Q ss_pred             CCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCcccc-ccchHHhhcCCCCcEEEccCCCCCcc
Q 013440          120 LAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE  193 (443)
Q Consensus       120 l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (443)
                      +.. + ..++++.+|++|++++|.++.+|.. ++++++|+.|++++|.+.. ..|.. +..+++|++|++++|.+...
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccc
Confidence            988 3 6689999999999999999988764 8999999999999976544 34443 78899999999999876544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=1.8e-22  Score=188.50  Aligned_cols=246  Identities=14%  Similarity=0.109  Sum_probs=167.8

Q ss_pred             CCCcEEEcccCCCCCc--cCcHHHHhcCCCCCEEEcCC-Cccc-cccccccCCCCCcEEEecCCCCCC--cccccCCCCC
Q 013440           59 PNLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKL  132 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L  132 (443)
                      .+++.|+++++.. ..  .+|..+ .++++|++|++++ |.+. .+|..++.+++|++|++++|.+..  +..++++++|
T Consensus        50 ~~l~~L~L~~~~l-~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNL-PKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCC-SSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCc-cCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            5788889988886 44  566654 7889999999984 7776 478888889999999999888874  6778888899


Q ss_pred             CEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCC-CCcEEEccCCCCCcccccCCCchhhhhccCCC
Q 013440          133 EILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSGWEKVEGGSNASLVELERLT  210 (443)
Q Consensus       133 ~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~  210 (443)
                      ++|++++|.++ .+|..+.++++|++|++++|.+.+.+|.. +..++ +|+.|++++|.+....+        ..++.++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~--------~~~~~l~  198 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP--------PTFANLN  198 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC--------GGGGGCC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC--------hHHhCCc
Confidence            99999988887 67888888889999998887776677765 67776 88888888887765444        5566665


Q ss_pred             CCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceee
Q 013440          211 ELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLW  290 (443)
Q Consensus       211 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  290 (443)
                       |++|++++|.+...+..                       .+..+++|+.|++++|.+....+.   +. .+++|++|+
T Consensus       199 -L~~L~Ls~N~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~---~~-~l~~L~~L~  250 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASV-----------------------LFGSDKNTQKIHLAKNSLAFDLGK---VG-LSKNLNGLD  250 (313)
T ss_dssp             -CSEEECCSSEEEECCGG-----------------------GCCTTSCCSEEECCSSEECCBGGG---CC-CCTTCCEEE
T ss_pred             -ccEEECcCCcccCcCCH-----------------------HHhcCCCCCEEECCCCceeeecCc---cc-ccCCCCEEE
Confidence             88888887766432221                       124456666666666655433222   11 125667777


Q ss_pred             ccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccc
Q 013440          291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTN  352 (443)
Q Consensus       291 L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~  352 (443)
                      +++|.....++..+.   .+++|++|++++|.--..++      ....+++|+.|++.+.+.
T Consensus       251 Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ip------~~~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          251 LRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCSSCCEECCCGGGG---GCTTCCEEECCSSEEEEECC------CSTTGGGSCGGGTCSSSE
T ss_pred             CcCCcccCcCChHHh---cCcCCCEEECcCCcccccCC------CCccccccChHHhcCCCC
Confidence            766665544444443   56677777777663222222      224556666666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=8.1e-21  Score=178.75  Aligned_cols=291  Identities=13%  Similarity=0.098  Sum_probs=204.1

Q ss_pred             CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEec
Q 013440           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD  116 (443)
Q Consensus        38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~  116 (443)
                      +++.+++.++.+..+|... .+.++.|++++|..  ..++...|.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            6889999999998887644 47899999999986  566665578999999999999999886 7889999999999999


Q ss_pred             CCCCCC-cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCcccc--ccchHHhhcCCCCcEEEccCCCCCc
Q 013440          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLE--VIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       117 ~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      +|.+.. +..+.  ++|++|++++|.++.++. .+.++++|+.|++++|....  ..+. .+..+++|++|++++|.+..
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCcccc
Confidence            999887 44433  799999999999997765 48999999999999976643  3333 47899999999999998765


Q ss_pred             ccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440          193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI  272 (443)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (443)
                      .+.         .+  .++|++|++++|.+..++..                       .+..+++|+.|++++|.+...
T Consensus       186 l~~---------~~--~~~L~~L~l~~n~l~~~~~~-----------------------~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          186 IPQ---------GL--PPSLTELHLDGNKITKVDAA-----------------------SLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             CCS---------SC--CTTCSEEECTTSCCCEECTG-----------------------GGTTCTTCCEEECCSSCCCEE
T ss_pred             CCc---------cc--cccCCEEECCCCcCCccCHH-----------------------HhcCCCCCCEEECCCCcCcee
Confidence            432         11  27899999999988655432                       124456666677777655332


Q ss_pred             ccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccc--cccCccCcccceecccc
Q 013440          273 LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRR--VRCEVFPLLEALSLMFL  350 (443)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~L~~L~l~~c  350 (443)
                      .  +..+.. +++|++|++++|... .++..+   ..+++|++|++++| .++.++.....  .....++.|+.|++.+.
T Consensus       232 ~--~~~~~~-l~~L~~L~L~~N~l~-~lp~~l---~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          232 D--NGSLAN-TPHLRELHLNNNKLV-KVPGGL---ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN  303 (330)
T ss_dssp             C--TTTGGG-STTCCEEECCSSCCS-SCCTTT---TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             C--hhhccC-CCCCCEEECCCCcCc-cCChhh---ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecC
Confidence            2  122333 377888888887544 444433   37888888888887 45554322110  01123577888888875


Q ss_pred             ccccccccccccccccccccceeeeccC
Q 013440          351 TNLETICYSQLREDQSFSNLRIINVDSC  378 (443)
Q Consensus       351 ~~l~~~~~~~~~~~~~~~~L~~L~i~~c  378 (443)
                      + +......+-. ...+++++.++++++
T Consensus       304 ~-~~~~~i~~~~-f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          304 P-VQYWEIQPST-FRCVYVRAAVQLGNY  329 (330)
T ss_dssp             S-SCGGGSCGGG-GTTCCCGGGEEC---
T ss_pred             c-ccccccCccc-cccccceeEEEeccc
Confidence            4 3322211111 234667777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=3.2e-22  Score=186.78  Aligned_cols=192  Identities=15%  Similarity=0.208  Sum_probs=160.9

Q ss_pred             CCCeEEeCCCCCCC---CCCCcC-CCCCCcEEEccc-CCCCCccCcHHHHhcCCCCCEEEcCCCccc-cccccccCCCCC
Q 013440           37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINL  110 (443)
Q Consensus        37 ~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~p~~l~~l~~L  110 (443)
                      .++++|+++++.+.   .+|... ++++|++|++++ |.. ...+|..+ .++++|++|++++|.++ .+|..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            67999999999996   466655 899999999995 765 55677764 89999999999999998 588999999999


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCC-CCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLT-RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (443)
                      ++|++++|.+..  +..++.+++|++|++++|.++ .+|..+.+++ +|+.|++++|.+.+..|.. +..+. |+.|+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence            999999999885  688999999999999999998 7899999998 9999999998887778875 67777 9999999


Q ss_pred             CCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEE
Q 013440          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIR  240 (443)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~  240 (443)
                      +|.+....+        ..++.+++|+.|++++|.+...+..+ .+++|+.+++.
T Consensus       206 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          206 RNMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR  252 (313)
T ss_dssp             SSEEEECCG--------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred             CCcccCcCC--------HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECc
Confidence            998876554        67889999999999999886433322 23455555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=2.2e-21  Score=182.75  Aligned_cols=291  Identities=13%  Similarity=0.112  Sum_probs=199.6

Q ss_pred             CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEec
Q 013440           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD  116 (443)
Q Consensus        38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~  116 (443)
                      +++.+++.++.++.+|... .++++.|++++|..  ..++...|.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5889999999998888755 47999999999986  556555568999999999999999885 7789999999999999


Q ss_pred             CCCCCC-cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCcccc--ccchHHhhcCCCCcEEEccCCCCCc
Q 013440          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE--VIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       117 ~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      +|.+.. +..+.  ++|++|++++|.++.++.. +.++++|+.|++++|.+..  ..+. .+..+ +|+.|++++|.+..
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCc
Confidence            999887 44443  8999999999999987764 8899999999999976642  3333 35666 89999999998765


Q ss_pred             ccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440          193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI  272 (443)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (443)
                      .+.         .+  .++|++|++++|.+..++...                       +..+++|+.|++++|.+...
T Consensus       187 l~~---------~~--~~~L~~L~l~~n~i~~~~~~~-----------------------l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          187 IPK---------DL--PETLNELHLDHNKIQAIELED-----------------------LLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             CCS---------SS--CSSCSCCBCCSSCCCCCCTTS-----------------------STTCTTCSCCBCCSSCCCCC
T ss_pred             cCc---------cc--cCCCCEEECCCCcCCccCHHH-----------------------hcCCCCCCEEECCCCcCCcC
Confidence            432         12  268999999999887665321                       13445566666666555322


Q ss_pred             ccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeeccccccc--ccCccCcccceecccc
Q 013440          273 LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRV--RCEVFPLLEALSLMFL  350 (443)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~c  350 (443)
                      .  +..+.. +++|+.|++++|... .++..+.   .+++|++|+++++ .++.++......  ....++.|+.|++.++
T Consensus       233 ~--~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~---~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          233 E--NGSLSF-LPTLRELHLDNNKLS-RVPAGLP---DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             C--TTGGGG-CTTCCEEECCSSCCC-BCCTTGG---GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             C--hhHhhC-CCCCCEEECCCCcCe-ecChhhh---cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence            1  112332 367777777776543 4444343   6778888888877 354443211100  1122567888888876


Q ss_pred             ccccccccccccccccccccceeeeccCc
Q 013440          351 TNLETICYSQLREDQSFSNLRIINVDSCR  379 (443)
Q Consensus       351 ~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  379 (443)
                      + +......+.. ...+++|+.++++++.
T Consensus       305 ~-~~~~~~~~~~-~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          305 P-VPYWEVQPAT-FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             S-SCGGGSCGGG-GTTBCCSTTEEC----
T ss_pred             c-ccccccCccc-ccccchhhhhhccccc
Confidence            4 3321111111 2457778888887764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=6.5e-22  Score=188.07  Aligned_cols=195  Identities=18%  Similarity=0.186  Sum_probs=138.4

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTL  113 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L  113 (443)
                      .++.....+.+++.++.+|... .++|++|++++|..  ..++...+.++++|++|++++|.++.+ |..+..+++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3344455677777777777643 35788888888875  555554567888888888888888775 4567888888888


Q ss_pred             EecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCch--hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          114 CLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       114 ~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      ++++|.+.. + ..++++++|++|++++|.++.+|.  .+.++++|+.|++++|.....++...+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            888888877 3 347788888888888888887776  577888888888888755555554446778888888888877


Q ss_pred             CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEE
Q 013440          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIR  240 (443)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~  240 (443)
                      +....+        ..++.+++|++|++++|.+..++...  .+++|+.+++.
T Consensus       186 l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          186 LQSYEP--------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             CCEECT--------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred             cCccCH--------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence            665443        56677777888888877776555432  12444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=7.3e-22  Score=185.45  Aligned_cols=90  Identities=27%  Similarity=0.376  Sum_probs=73.2

Q ss_pred             cCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEecc
Q 013440           83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS  161 (443)
Q Consensus        83 ~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~  161 (443)
                      ....+++|++++|.++.+|..+..+++|++|++++|.+.. +..++++++|++|++++|.++.+|..+.++++|+.|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            4578888888888888888888888888888888888777 667788888888888888888888888888888888888


Q ss_pred             CCccccccchH
Q 013440          162 NCWWLEVIAPN  172 (443)
Q Consensus       162 ~~~~~~~~~~~  172 (443)
                      +|+..+.+|..
T Consensus       159 ~n~~~~~~p~~  169 (328)
T 4fcg_A          159 ACPELTELPEP  169 (328)
T ss_dssp             EETTCCCCCSC
T ss_pred             CCCCccccChh
Confidence            87777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=1.8e-23  Score=206.19  Aligned_cols=359  Identities=16%  Similarity=0.082  Sum_probs=204.5

Q ss_pred             hccCCCCeEEeCCCCCCC-----CCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCC----CCCEEEcCCCccc----
Q 013440           33 ETIQKDPIAISLPHRDIQ-----ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGME----GLKVLQFPGIGSS----   98 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~----   98 (443)
                      ...++++++|++++|.+.     .++... .+++|++|++++|.. .+..+..++..+.    +|++|++++|.++    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            445677888888888775     223322 678888888888875 3333445555566    6888888888876    


Q ss_pred             -cccccccCCCCCcEEEecCCCCCC--ccc-----ccCCCCCCEEEcCCCCCCC-----CchhhcCCCCCCEEeccCCcc
Q 013440           99 -SLPSSLGRLINLQTLCLDWCELAD--IAA-----IGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWW  165 (443)
Q Consensus        99 -~~p~~l~~l~~L~~L~l~~~~l~~--~~~-----~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~  165 (443)
                       .++..+..+++|++|++++|.+.+  +..     .....+|++|++++|.++.     ++..+..+++|+.|++++|.+
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence             256777788888888888888765  222     2235678888888887763     355566778888888888764


Q ss_pred             ccccchHHh----hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCC-----Ccc--ccccC
Q 013440          166 LEVIAPNVI----SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP-----PDF--VSVEL  234 (443)
Q Consensus       166 ~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~--~~~~L  234 (443)
                      .+..+..+.    ...++|++|++++|.+.....    ......+..+++|++|++++|.+....     ...  .+++|
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L  258 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC----RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL  258 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH----HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH----HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence            443332211    135578888888886654321    112345667788888888888764321     111  24677


Q ss_pred             cEEEEEecCCCCCC---CCchhcccccceeEEEcCccccccccccchhhHh----hcccceeeccccCCccc----cccc
Q 013440          235 QRYKIRIGDGPEDE---FDPLLVKSEASRLMMLKGIKKVSILQENDGTKML----LQRTEDLWLETLEGVQS----VVHE  303 (443)
Q Consensus       235 ~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~----~~~~  303 (443)
                      +.+++..+......   ....+..+++|+.|++++|.+.....  ..+...    .++|++|++++|.....    ++..
T Consensus       259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  336 (461)
T 1z7x_W          259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA--RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  336 (461)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH--HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence            77777544333211   11223456777777777765532211  111111    14777777777764432    2222


Q ss_pred             cccCCCCCCccEEEEecccCceeeccccccccc-CccCcccceecccccccccccccccc-ccccccccceeeeccCcCc
Q 013440          304 LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRC-EVFPLLEALSLMFLTNLETICYSQLR-EDQSFSNLRIINVDSCRKL  381 (443)
Q Consensus       304 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~-~~~~~~~L~~L~i~~c~~l  381 (443)
                      +.   .+++|++|++++| .++........... ...+.|+.|++++| .+++.....++ ....+++|++|++++| .+
T Consensus       337 l~---~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i  410 (461)
T 1z7x_W          337 LA---QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CL  410 (461)
T ss_dssp             HH---HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SC
T ss_pred             Hh---hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CC
Confidence            22   5677777777777 33321100000011 12567777777776 34421110111 0234677777777775 45


Q ss_pred             ccccChhhhhcc----cccceeeeccC
Q 013440          382 KYLFSFSMAKNL----LRLQKVKVEDC  404 (443)
Q Consensus       382 ~~~~~~~~~~~~----~~L~~L~i~~C  404 (443)
                      ++.+...+...+    .+|+.|.+.++
T Consensus       411 ~~~~~~~l~~~l~~~~~~L~~L~~~~~  437 (461)
T 1z7x_W          411 GDAGILQLVESVRQPGCLLEQLVLYDI  437 (461)
T ss_dssp             CHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             CHHHHHHHHHHhccCCcchhheeeccc
Confidence            544332333222    34666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=4.5e-21  Score=180.06  Aligned_cols=219  Identities=21%  Similarity=0.226  Sum_probs=100.7

Q ss_pred             CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEc
Q 013440           59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSL  137 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l  137 (443)
                      ++++.|++++|..  ..+|..+ .++++|++|++++|.++.+|..++.+++|++|++++|.+.. +..++++++|++|++
T Consensus        81 ~~l~~L~L~~n~l--~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPL--PQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCC--SSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCc--hhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            3444444444443  2334332 23444444444444444444444444444444444444444 334444444444444


Q ss_pred             CCCC-CCCCchhhc---------CCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440          138 AYSN-INQLPVEIG---------QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE  207 (443)
Q Consensus       138 ~~~~-~~~lp~~~~---------~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~  207 (443)
                      ++|. ...+|..+.         ++++|+.|++++|.+. .+|.. ++.+++|++|++++|.+...+         ..++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~l~---------~~l~  226 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSALG---------PAIH  226 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCCCC---------GGGG
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCcCc---------hhhc
Confidence            4432 223333332         2555555555553322 44433 445555555555555443221         2344


Q ss_pred             CCCCCCEEEeecCCC-CCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhccc
Q 013440          208 RLTELTTLEIEVPDA-EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT  286 (443)
Q Consensus       208 ~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  286 (443)
                      .+++|++|++++|.. ..+|..                        +..+++|+.|++++|+..+.++  ..+..+ ++|
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~------------------------~~~l~~L~~L~L~~n~~~~~~p--~~~~~l-~~L  279 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPI------------------------FGGRAPLKRLILKDCSNLLTLP--LDIHRL-TQL  279 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCC------------------------TTCCCCCCEEECTTCTTCCBCC--TTGGGC-TTC
T ss_pred             cCCCCCEEECcCCcchhhhHHH------------------------hcCCCCCCEEECCCCCchhhcc--hhhhcC-CCC
Confidence            555555555555443 222221                        1333444445555544433322  223322 566


Q ss_pred             ceeeccccCCccccccccccCCCCCCccEEEEecc
Q 013440          287 EDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC  321 (443)
Q Consensus       287 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  321 (443)
                      +.|++++|.....++..+.   .+++|+.+.+...
T Consensus       280 ~~L~L~~n~~~~~iP~~l~---~L~~L~~l~l~~~  311 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLPSLIA---QLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCCCCGGGG---GSCTTCEEECCGG
T ss_pred             CEEeCCCCCchhhccHHHh---hccCceEEeCCHH
Confidence            6666666666666655554   6666666666644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=3.9e-23  Score=210.33  Aligned_cols=142  Identities=13%  Similarity=0.084  Sum_probs=82.2

Q ss_pred             ccccceeEEEcCccccccccccchhhHhhcccceeecccc---CCcccc------ccccccCCCCCCccEEEEecccC-c
Q 013440          255 KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL---EGVQSV------VHELDDGEGFPRLKRLLVTDCSE-I  324 (443)
Q Consensus       255 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~---~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~-l  324 (443)
                      .+++|+.|++..+.+....  ...+...+++|+.|+++++   ..+...      ...+   ..+++|++|+++.|.+ +
T Consensus       376 ~~~~L~~L~l~~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~---~~~~~L~~L~L~~~~~~l  450 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNES--LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL---IGCKKLRRFAFYLRQGGL  450 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHH--HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH---HHCTTCCEEEEECCGGGC
T ss_pred             hCccCeEEEeecCCccHHH--HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH---HhCCCCCEEEEecCCCCc
Confidence            4666777766544442211  1223333467777777642   233321      1112   2477788888876643 2


Q ss_pred             eeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440          325 LHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC  404 (443)
Q Consensus       325 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C  404 (443)
                      +   +.........+++|+.|++++|. +++.....+  ...+++|++|++++|+ +++.....+...+++|++|++++|
T Consensus       451 ~---~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          451 T---DLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF--SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             C---HHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH--HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             c---HHHHHHHHHhCccceEeeccCCC-CCHHHHHHH--HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence            1   11111122347888888888763 443221111  2457999999999998 666544456678899999999999


Q ss_pred             ccccc
Q 013440          405 DDLKM  409 (443)
Q Consensus       405 ~~l~~  409 (443)
                      . +++
T Consensus       524 ~-it~  527 (592)
T 3ogk_B          524 R-ASM  527 (592)
T ss_dssp             B-CCT
T ss_pred             c-CCH
Confidence            7 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=9e-22  Score=200.26  Aligned_cols=351  Identities=14%  Similarity=0.054  Sum_probs=231.7

Q ss_pred             cCCCCeEEeCCCCCCCCCC-----CcC-CCCCCcEEEcccCCCCC---ccCcHHHHhcCCCCCEEEcCCCcccccccccc
Q 013440           35 IQKDPIAISLPHRDIQELP-----ERL-QCPNLQLFLLYTEGNGP---MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG  105 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~-----~~~-~~~~L~~L~l~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~  105 (443)
                      .++++++|++.+|.+....     ... .+++|+.|++++|.. .   ......++.++++|++|++++|.+..+|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC-CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            5678888888888663221     122 678888888888775 2   12223345678888888888888888888888


Q ss_pred             CCCCCcEEEecCCCCC----C-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCC
Q 013440          106 RLINLQTLCLDWCELA----D-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL  180 (443)
Q Consensus       106 ~l~~L~~L~l~~~~l~----~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  180 (443)
                      .+++|++|+++.....    . ...+..+++|+.|+++++....+|..+..+++|+.|++++|.+........+..+++|
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            8888888888754322    1 4667788899999998876667888888999999999999874444443446889999


Q ss_pred             cEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeec-----------CCCCC--CCCcc-ccccCcEEEEEecCCCC
Q 013440          181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEV-----------PDAEI--LPPDF-VSVELQRYKIRIGDGPE  246 (443)
Q Consensus       181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~--~~~~~-~~~~L~~l~l~~~~~~~  246 (443)
                      ++|++..+ +...       ........+++|++|++..           +.+..  ++... .+++|+.+++.......
T Consensus       321 ~~L~L~~~-~~~~-------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          321 EVLETRNV-IGDR-------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN  392 (592)
T ss_dssp             CEEEEEGG-GHHH-------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred             CEEeccCc-cCHH-------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence            99999833 2211       1223446789999999993           33322  11111 46899999995555433


Q ss_pred             CCCCchh-cccccceeEEEcCcc---ccccccccc---hhhHhhcccceeeccccCC-ccccccccccCCCCCCccEEEE
Q 013440          247 DEFDPLL-VKSEASRLMMLKGIK---KVSILQEND---GTKMLLQRTEDLWLETLEG-VQSVVHELDDGEGFPRLKRLLV  318 (443)
Q Consensus       247 ~~~~~~~-~~~~~L~~L~l~~~~---~~~~~~~~~---~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~l~~L~~L~l  318 (443)
                      .. ...+ ..+++|+.|++.++.   .....+...   .+...+++|++|+++.|.+ +.+...... ...+++|++|++
T Consensus       393 ~~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L  470 (592)
T 3ogk_B          393 ES-LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLL  470 (592)
T ss_dssp             HH-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEE
T ss_pred             HH-HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeec
Confidence            22 1222 348899999997432   222211111   1223358999999987653 222211111 235899999999


Q ss_pred             ecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccce
Q 013440          319 TDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK  398 (443)
Q Consensus       319 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~  398 (443)
                      ++|. ++   +.+.......+++|+.|++++|+ +++.....+  ...+++|++|++++|. +++.+.......+|.+..
T Consensus       471 ~~n~-l~---~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~--~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~  542 (592)
T 3ogk_B          471 GYVG-ES---DEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA--VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNI  542 (592)
T ss_dssp             CSCC-SS---HHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH--HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEE
T ss_pred             cCCC-CC---HHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH--HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEE
Confidence            9884 33   21222234678999999999997 544322111  2468999999999998 887766566677888777


Q ss_pred             eeeccC
Q 013440          399 VKVEDC  404 (443)
Q Consensus       399 L~i~~C  404 (443)
                      ..+...
T Consensus       543 ~~~~~~  548 (592)
T 3ogk_B          543 ELIPSR  548 (592)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=1e-20  Score=176.04  Aligned_cols=240  Identities=20%  Similarity=0.154  Sum_probs=144.1

Q ss_pred             EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc---cccccCCCCCcEEEecC
Q 013440           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLDW  117 (443)
Q Consensus        41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---p~~l~~l~~L~~L~l~~  117 (443)
                      .+...++.++.+|... .++|+.|++++|..  ..++..+|.++++|++|++++|.++..   +..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            5566666666666533 35677777777764  466666566777777777777776543   45556677777777777


Q ss_pred             CCCCC-cccccCCCCCCEEEcCCCCCCCCch--hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcc-
Q 013440          118 CELAD-IAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE-  193 (443)
Q Consensus       118 ~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-  193 (443)
                      |.+.. +..+..+++|++|++++|.++.++.  .+.++++|+.|++++|.+....+. .+..+++|++|++++|.+... 
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCcccccc
Confidence            77666 5556677777777777777765543  566777777777777655444443 356677777777777765431 


Q ss_pred             cccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL  273 (443)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (443)
                      .+        ..++.+++|++|++++|.+..++..                       .+..+++|+.|++++|.+....
T Consensus       167 ~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          167 LP--------DIFTELRNLTFLDLSQCQLEQLSPT-----------------------AFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             EC--------SCCTTCTTCCEEECTTSCCCEECTT-----------------------TTTTCTTCCEEECTTSCCSBCC
T ss_pred             ch--------hHHhhCcCCCEEECCCCCcCCcCHH-----------------------HhcCCCCCCEEECCCCccCccC
Confidence            22        4566677777777777766544221                       1134455555555555442211


Q ss_pred             cccchhhHhhcccceeeccccCCccccccccccCCCCC-CccEEEEecc
Q 013440          274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFP-RLKRLLVTDC  321 (443)
Q Consensus       274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~  321 (443)
                      .  ..+.. +++|+.|++++|......+..+.   .++ +|++|+++++
T Consensus       216 ~--~~~~~-l~~L~~L~L~~N~l~~~~~~~~~---~~~~~L~~L~L~~N  258 (306)
T 2z66_A          216 T--FPYKC-LNSLQVLDYSLNHIMTSKKQELQ---HFPSSLAFLNLTQN  258 (306)
T ss_dssp             S--GGGTT-CTTCCEEECTTSCCCBCSSSSCC---CCCTTCCEEECTTC
T ss_pred             h--hhccC-cccCCEeECCCCCCcccCHHHHH---hhhccCCEEEccCC
Confidence            1  11221 25666666666654443333332   443 6777777766

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=2e-20  Score=174.18  Aligned_cols=228  Identities=16%  Similarity=0.117  Sum_probs=180.4

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCC-ccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGP-MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L  110 (443)
                      ...+++++|+++++.++.++..  .++++|+.|++++|.... ...+..+ .++++|++|++++|.++.+|..+..+++|
T Consensus        25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L  103 (306)
T 2z66_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQL  103 (306)
T ss_dssp             CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred             CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCC
Confidence            4567899999999999888874  389999999999998611 1224554 67999999999999999999889999999


Q ss_pred             cEEEecCCCCCC-c--ccccCCCCCCEEEcCCCCCCC-CchhhcCCCCCCEEeccCCcccc-ccchHHhhcCCCCcEEEc
Q 013440          111 QTLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYM  185 (443)
Q Consensus       111 ~~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l  185 (443)
                      ++|++++|.+.. +  ..+..+++|++|++++|.++. .+..+..+++|+.|++++|.+.+ ..|.. +..+++|++|++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEEC
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEEC
Confidence            999999999877 3  578899999999999998884 55668899999999999987665 35543 789999999999


Q ss_pred             cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhccc-ccceeE
Q 013440          186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLM  262 (443)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L  262 (443)
                      ++|.+....+        ..++.+++|++|++++|.+..++...  .+++|+.+++..+....... ..+..+ ++|+.|
T Consensus       183 s~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L  253 (306)
T 2z66_A          183 SQCQLEQLSP--------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFL  253 (306)
T ss_dssp             TTSCCCEECT--------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-SSCCCCCTTCCEE
T ss_pred             CCCCcCCcCH--------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-HHHHhhhccCCEE
Confidence            9998876554        67888999999999999998776643  34778888875554433221 122344 477788


Q ss_pred             EEcCcccccc
Q 013440          263 MLKGIKKVSI  272 (443)
Q Consensus       263 ~l~~~~~~~~  272 (443)
                      ++++|.+...
T Consensus       254 ~L~~N~~~~~  263 (306)
T 2z66_A          254 NLTQNDFACT  263 (306)
T ss_dssp             ECTTCCEECS
T ss_pred             EccCCCeecc
Confidence            8888776443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=1.2e-20  Score=173.85  Aligned_cols=219  Identities=18%  Similarity=0.162  Sum_probs=135.9

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~  118 (443)
                      +.++..++.++.+|.. ..++|+.|++++|..  ..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            5666666666666543 245777777777774  445544456777777777777777664 566777777777777777


Q ss_pred             C-CCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440          119 E-LAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (443)
Q Consensus       119 ~-l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (443)
                      . +..  +..+..+++|++|++++|.++.+ |..+.++++|+.|++++|.+. .++...+..+++|++|++++|.+....
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence            6 555  45667777777777777777755 444667777777777775443 444333667777777777777665443


Q ss_pred             ccCCCchhhhhccCCCCCCEEEeecCCCCCC-CCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440          195 VEGGSNASLVELERLTELTTLEIEVPDAEIL-PPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS  271 (443)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (443)
                      .        ..+..+++|++|++++|.+..+ |..+ .+++|+.+++..+...... ...+..+++|+.|++++|....
T Consensus       170 ~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          170 E--------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             T--------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEEC
T ss_pred             H--------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccC
Confidence            3        3466677777777777776544 2222 2345555555433322211 1224556666666666665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=178.20  Aligned_cols=260  Identities=15%  Similarity=0.140  Sum_probs=188.8

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-  103 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-  103 (443)
                      +.+.+. +..+++++|+++++.++.++.  ..++++|+.|++++|..  ..++...|.++++|++|++++|.++.+|.. 
T Consensus        43 l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  119 (353)
T 2z80_A           43 LNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW  119 (353)
T ss_dssp             CSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred             cccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence            444443 355799999999999988776  34899999999999986  555555568999999999999999998866 


Q ss_pred             ccCCCCCcEEEecCCCCCC-cc--cccCCCCCCEEEcCCC-CCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCC
Q 013440          104 LGRLINLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYS-NINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS  178 (443)
Q Consensus       104 l~~l~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~-~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  178 (443)
                      ++.+++|++|++++|.+.. +.  .++.+++|++|++++| .++.+ +..+.++++|+.|++++|.+.+..+.. +..++
T Consensus       120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~  198 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQ  198 (353)
T ss_dssp             HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCS
T ss_pred             hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-Hhccc
Confidence            8899999999999999888 33  6889999999999999 57765 456899999999999998766655654 78999


Q ss_pred             CCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhccccc
Q 013440          179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEA  258 (443)
Q Consensus       179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  258 (443)
                      +|++|++++|.+.....        ..++.+++|++|++++|.+..++....    .                .......
T Consensus       199 ~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~l----~----------------~~~~~~~  250 (353)
T 2z80_A          199 NVSHLILHMKQHILLLE--------IFVDVTSSVECLELRDTDLDTFHFSEL----S----------------TGETNSL  250 (353)
T ss_dssp             EEEEEEEECSCSTTHHH--------HHHHHTTTEEEEEEESCBCTTCCCC--------------------------CCCC
T ss_pred             cCCeecCCCCccccchh--------hhhhhcccccEEECCCCcccccccccc----c----------------cccccch
Confidence            99999999998754432        345678999999999999876553210    0                0022344


Q ss_pred             ceeEEEcCcccccc--ccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEeccc
Q 013440          259 SRLMMLKGIKKVSI--LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS  322 (443)
Q Consensus       259 L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  322 (443)
                      ++.+++..+.+...  ...+.++.. +++|+.|++++|... .++...  .+.+++|++|++++|+
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~-~i~~~~--~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLK-SVPDGI--FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCC-CCCTTT--TTTCTTCCEEECCSSC
T ss_pred             hhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCC-ccCHHH--HhcCCCCCEEEeeCCC
Confidence            55555555443221  011222332 267777777777544 333322  1367777777777774

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=7.3e-20  Score=179.82  Aligned_cols=241  Identities=20%  Similarity=0.140  Sum_probs=164.7

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW  117 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~  117 (443)
                      .+.++..+..+..+|... .++++.|++++|..  ..++...|.++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456777777777777543 36888899988885  4454444688899999999998888754 6688888999999998


Q ss_pred             CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (443)
Q Consensus       118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (443)
                      |.+.. + ..++.+++|++|++++|.++.+|. .+.++++|+.|++++|+..+.++...+..+++|+.|++++|.+... 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            88877 3 557888899999999988887765 4778889999998887777777766678888888888888876543 


Q ss_pred             ccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccc
Q 013440          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ  274 (443)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  274 (443)
                               ..+..+++|++|++++|.+..++...                       +..+++|+.|++++|.+.... 
T Consensus       212 ---------~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~-  258 (452)
T 3zyi_A          212 ---------PNLTPLVGLEELEMSGNHFPEIRPGS-----------------------FHGLSSLKKLWVMNSQVSLIE-  258 (452)
T ss_dssp             ---------CCCTTCTTCCEEECTTSCCSEECGGG-----------------------GTTCTTCCEEECTTSCCCEEC-
T ss_pred             ---------ccccccccccEEECcCCcCcccCccc-----------------------ccCccCCCEEEeCCCcCceEC-
Confidence                     23667888888888888876554321                       234445555555554442221 


Q ss_pred             ccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecc
Q 013440          275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC  321 (443)
Q Consensus       275 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  321 (443)
                       +..+.. +++|+.|+|++|.........+   ..+++|++|+|+++
T Consensus       259 -~~~~~~-l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          259 -RNAFDG-LASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHN  300 (452)
T ss_dssp             -TTTTTT-CTTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSS
T ss_pred             -HHHhcC-CCCCCEEECCCCcCCccChHHh---ccccCCCEEEccCC
Confidence             112222 2556666666554332222222   24566666666665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=7.9e-20  Score=178.95  Aligned_cols=175  Identities=22%  Similarity=0.232  Sum_probs=136.0

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW  117 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~  117 (443)
                      .+.++..+..+..+|... .++++.|++++|..  ..++...|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456777777777777644 36788899988885  5555555688899999999998888754 6688888999999998


Q ss_pred             CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (443)
Q Consensus       118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (443)
                      |.+.. + ..+..+++|++|++++|.++.++. .+.++++|+.|++++|+....++...+..+++|++|++++|.+... 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence            88877 3 467888899999999888887665 5778888999998887777777766678888888888888876533 


Q ss_pred             ccCCCchhhhhccCCCCCCEEEeecCCCCCCC
Q 013440          195 VEGGSNASLVELERLTELTTLEIEVPDAEILP  226 (443)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  226 (443)
                               ..+..+++|++|++++|.+..++
T Consensus       201 ---------~~~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          201 ---------PNLTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             ---------CCCTTCSSCCEEECTTSCCCEEC
T ss_pred             ---------cccCCCcccCEEECCCCccCccC
Confidence                     23677888888888888876554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=6.5e-19  Score=178.09  Aligned_cols=257  Identities=19%  Similarity=0.126  Sum_probs=174.5

Q ss_pred             CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l  115 (443)
                      ..+++.|+++++.+..+|.... ++|+.|++++|.+  ..+|.    .+++|++|++++|.++.+|.   .+++|++|++
T Consensus        39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            3468999999999998887554 8999999999985  56665    57899999999999998887   6789999999


Q ss_pred             cCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      ++|.+..++.  .+.+|+.|++++|.++.+|..   +++|+.|++++|.+ ..+|.    .+.+|+.|++++|.+...+ 
T Consensus       109 s~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l~~l~-  177 (622)
T 3g06_A          109 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTSLP-  177 (622)
T ss_dssp             CSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCCC-
T ss_pred             cCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCCCCCc-
Confidence            9999887333  678899999999999888764   48899999998654 44543    3467888888888765422 


Q ss_pred             cCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (443)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (443)
                                 ..+++|+.|++++|.+..+|..  .++|+.+.+                         .+|.+.. ++ 
T Consensus       178 -----------~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L-------------------------~~N~l~~-l~-  217 (622)
T 3g06_A          178 -----------MLPSGLQELSVSDNQLASLPTL--PSELYKLWA-------------------------YNNRLTS-LP-  217 (622)
T ss_dssp             -----------CCCTTCCEEECCSSCCSCCCCC--CTTCCEEEC-------------------------CSSCCSS-CC-
T ss_pred             -----------ccCCCCcEEECCCCCCCCCCCc--cchhhEEEC-------------------------cCCcccc-cC-
Confidence                       3467888889988888776652  244555444                         4433321 11 


Q ss_pred             cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccc
Q 013440          276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET  355 (443)
Q Consensus       276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  355 (443)
                       .    .+++|+.|++++|... .++      ..+++|++|++++| .++.++      .  .+++|+.|+++++ .++.
T Consensus       218 -~----~~~~L~~L~Ls~N~L~-~lp------~~l~~L~~L~Ls~N-~L~~lp------~--~~~~L~~L~Ls~N-~L~~  275 (622)
T 3g06_A          218 -A----LPSGLKELIVSGNRLT-SLP------VLPSELKELMVSGN-RLTSLP------M--LPSGLLSLSVYRN-QLTR  275 (622)
T ss_dssp             -C----CCTTCCEEECCSSCCS-CCC------CCCTTCCEEECCSS-CCSCCC------C--CCTTCCEEECCSS-CCCS
T ss_pred             -C----CCCCCCEEEccCCccC-cCC------CCCCcCcEEECCCC-CCCcCC------c--ccccCcEEeCCCC-CCCc
Confidence             0    1145666666655332 222      14456666666665 344333      1  4566666666664 4555


Q ss_pred             cccccccccccccccceeeeccCc
Q 013440          356 ICYSQLREDQSFSNLRIINVDSCR  379 (443)
Q Consensus       356 ~~~~~~~~~~~~~~L~~L~i~~c~  379 (443)
                      ++..    ...+++|+.|++++++
T Consensus       276 lp~~----l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          276 LPES----LIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCGG----GGGSCTTCEEECCSCC
T ss_pred             CCHH----HhhccccCEEEecCCC
Confidence            5432    2446666666666644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=4.8e-22  Score=195.97  Aligned_cols=357  Identities=18%  Similarity=0.101  Sum_probs=235.5

Q ss_pred             CCCCeEEeCCCCCCCCCC--C-cCCCCCCcEEEcccCCCCCc----cCcHHHHhcCCCCCEEEcCCCcccc-cc-ccccC
Q 013440           36 QKDPIAISLPHRDIQELP--E-RLQCPNLQLFLLYTEGNGPM----QVSDHFFEGMEGLKVLQFPGIGSSS-LP-SSLGR  106 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~-~p-~~l~~  106 (443)
                      ++++++|+++++.+...+  . ...+++|+.|++++|.. ..    .++ ..+..+++|++|++++|.++. .+ .....
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            356889999999885433  2 22789999999999986 32    223 345788999999999999865 22 22334


Q ss_pred             CC----CCcEEEecCCCCCC------cccccCCCCCCEEEcCCCCCCC-----Cchh-hcCCCCCCEEeccCCcccccc-
Q 013440          107 LI----NLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNINQ-----LPVE-IGQLTRLQLLDLSNCWWLEVI-  169 (443)
Q Consensus       107 l~----~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~~~~-----lp~~-~~~l~~L~~L~l~~~~~~~~~-  169 (443)
                      +.    +|++|++++|.+.+      +..+..+++|++|++++|.++.     +... ....++|+.|++++|.+.... 
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            55    79999999999874      4778899999999999998872     2222 234678999999998765533 


Q ss_pred             ---chHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc-CCCCCCEEEeecCCCCCC-----CCcc-ccccCcEEEE
Q 013440          170 ---APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTLEIEVPDAEIL-----PPDF-VSVELQRYKI  239 (443)
Q Consensus       170 ---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-----~~~~-~~~~L~~l~l  239 (443)
                         +. .+..+++|++|++++|.+......    .....+. ..++|++|++++|.+...     +..+ .+++|+.+++
T Consensus       160 ~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  234 (461)
T 1z7x_W          160 EPLAS-VLRAKPDFKELTVSNNDINEAGVR----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL  234 (461)
T ss_dssp             HHHHH-HHHHCTTCCEEECCSSBCHHHHHH----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHH-HHhhCCCCCEEECcCCCcchHHHH----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence               33 367789999999999986543320    1111222 366999999999988653     3333 4589999998


Q ss_pred             EecCCCCCCCC---c-hhcccccceeEEEcCccccccc--cccchhhHhhcccceeeccccCCccccccccc--cCCCCC
Q 013440          240 RIGDGPEDEFD---P-LLVKSEASRLMMLKGIKKVSIL--QENDGTKMLLQRTEDLWLETLEGVQSVVHELD--DGEGFP  311 (443)
Q Consensus       240 ~~~~~~~~~~~---~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~~~~l~  311 (443)
                      ..+...+....   + ....+++|+.|++++|.+....  ..+..+.. +++|++|++++|.........+.  .....+
T Consensus       235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  313 (461)
T 1z7x_W          235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGC  313 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred             cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence            65543221100   1 1124789999999998764321  01222333 38899999999865332211111  012346


Q ss_pred             CccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccc--cccccccceeeeccCcCccc-----c
Q 013440          312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKY-----L  384 (443)
Q Consensus       312 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~~~L~~L~i~~c~~l~~-----~  384 (443)
                      +|++|++++|. ++.............++.|+.|+++++ .+++.....+.+  ....++|++|++++| .+++     +
T Consensus       314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l  390 (461)
T 1z7x_W          314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSL  390 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred             cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHH
Confidence            99999999994 332210011123445699999999987 565543221210  012679999999997 5663     3


Q ss_pred             cChhhhhcccccceeeeccCc
Q 013440          385 FSFSMAKNLLRLQKVKVEDCD  405 (443)
Q Consensus       385 ~~~~~~~~~~~L~~L~i~~C~  405 (443)
                      +  .....+++|++|++++|.
T Consensus       391 ~--~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          391 A--ATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             H--HHHHHCCCCCEEECCSSS
T ss_pred             H--HHHHhCCCccEEECCCCC
Confidence            3  345678999999999984

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=8.3e-21  Score=177.58  Aligned_cols=263  Identities=13%  Similarity=-0.015  Sum_probs=162.0

Q ss_pred             CeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440           39 PIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~  116 (443)
                      ++..++..+.+...+...  .+++|+.|++++|..  ..++...+.++++|++|++++|.++..++ +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            334444544443222211  456788888888875  44555556788888888888888776554 7778888888888


Q ss_pred             CCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccccc
Q 013440          117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE  196 (443)
Q Consensus       117 ~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (443)
                      +|.+..+   ...++|++|++++|.++.++.  ..+++|+.|++++|.+....+. .+..+++|++|++++|.+..... 
T Consensus        89 ~n~l~~l---~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~-  161 (317)
T 3o53_A           89 NNYVQEL---LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNF-  161 (317)
T ss_dssp             SSEEEEE---EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEG-
T ss_pred             CCccccc---cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccH-
Confidence            8776552   233778888888887776553  2367788888888655443332 36677788888888877765443 


Q ss_pred             CCCchhhhhc-cCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440          197 GGSNASLVEL-ERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (443)
Q Consensus       197 ~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (443)
                             ..+ +.+++|++|++++|.+..++..                         ..+++|+.|++++|.+...   
T Consensus       162 -------~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------~~l~~L~~L~Ls~N~l~~l---  206 (317)
T 3o53_A          162 -------AELAASSDTLEHLNLQYNFIYDVKGQ-------------------------VVFAKLKTLDLSSNKLAFM---  206 (317)
T ss_dssp             -------GGGGGGTTTCCEEECTTSCCCEEECC-------------------------CCCTTCCEEECCSSCCCEE---
T ss_pred             -------HHHhhccCcCCEEECCCCcCcccccc-------------------------cccccCCEEECCCCcCCcc---
Confidence                   333 4677788888887776554432                         2345666666666655322   


Q ss_pred             cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccc
Q 013440          276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET  355 (443)
Q Consensus       276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  355 (443)
                      +..+... ++|+.|++++|... .++..+   ..+++|++|++++++-...    ........++.|+.|++.+++.++.
T Consensus       207 ~~~~~~l-~~L~~L~L~~N~l~-~l~~~~---~~l~~L~~L~l~~N~~~~~----~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          207 GPEFQSA-AGVTWISLRNNKLV-LIEKAL---RFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CGGGGGG-TTCSEEECTTSCCC-EECTTC---CCCTTCCEEECTTCCCBHH----HHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             hhhhccc-CcccEEECcCCccc-chhhHh---hcCCCCCEEEccCCCccCc----CHHHHHhccccceEEECCCchhccC
Confidence            1123333 77888888777544 344433   3677888888887742201    1112344566777777766655443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=2.4e-19  Score=165.02  Aligned_cols=218  Identities=21%  Similarity=0.157  Sum_probs=155.4

Q ss_pred             cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcC
Q 013440           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA  138 (443)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~  138 (443)
                      ++++.+++..  ..+|..   -.+.|++|++++|.++.++ ..+..+++|++|++++|.+..  +..++++++|++|+++
T Consensus        14 ~~~~c~~~~l--~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGL--QAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCC--SSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCc--ccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            5677777664  666653   3578999999999998866 568889999999999998877  4678889999999999


Q ss_pred             CCC-CCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440          139 YSN-INQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (443)
Q Consensus       139 ~~~-~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (443)
                      +|. ++.+ |..+..+++|+.|++++|.+....+. .+..+++|++|++++|.+.....        ..++.+++|++|+
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~  159 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPD--------DTFRDLGNLTHLF  159 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCH--------hHhccCCCccEEE
Confidence            996 7766 56688899999999999765544444 47888999999999988765543        5578889999999


Q ss_pred             eecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440          217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG  296 (443)
Q Consensus       217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (443)
                      +++|.+..++...                       +..+++|+.|++++|.+....  +..+..+ ++|+.|++++|..
T Consensus       160 l~~n~l~~~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~--~~~~~~l-~~L~~L~l~~n~l  213 (285)
T 1ozn_A          160 LHGNRISSVPERA-----------------------FRGLHSLDRLLLHQNRVAHVH--PHAFRDL-GRLMTLYLFANNL  213 (285)
T ss_dssp             CCSSCCCEECTTT-----------------------TTTCTTCCEEECCSSCCCEEC--TTTTTTC-TTCCEEECCSSCC
T ss_pred             CCCCcccccCHHH-----------------------hcCccccCEEECCCCcccccC--HhHccCc-ccccEeeCCCCcC
Confidence            9988887665431                       134455666666665553322  2223332 6777777777655


Q ss_pred             ccccccccccCCCCCCccEEEEeccc
Q 013440          297 VQSVVHELDDGEGFPRLKRLLVTDCS  322 (443)
Q Consensus       297 ~~~~~~~~~~~~~l~~L~~L~l~~~~  322 (443)
                      ....+..+.   .+++|++|++++++
T Consensus       214 ~~~~~~~~~---~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          214 SALPTEALA---PLRALQYLRLNDNP  236 (285)
T ss_dssp             SCCCHHHHT---TCTTCCEEECCSSC
T ss_pred             CcCCHHHcc---cCcccCEEeccCCC
Confidence            443222233   67788888887774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=1.8e-18  Score=174.86  Aligned_cols=258  Identities=19%  Similarity=0.101  Sum_probs=173.1

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCC
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAY  139 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~  139 (443)
                      +++.|++++|..  ..+|..+   .++|++|++++|.++.+|.   .+++|++|++++|.+..++.  .+++|++|++++
T Consensus        41 ~l~~L~ls~n~L--~~lp~~l---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGL--TTLPDCL---PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCC--SCCCSCC---CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred             CCcEEEecCCCc--CccChhh---CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence            467777777764  4666543   2677777777777777665   45677777777777666322  567777777777


Q ss_pred             CCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeec
Q 013440          140 SNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEV  219 (443)
Q Consensus       140 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  219 (443)
                      |.++.+|.   .+++|+.|++++|. +..+|.    .+++|++|++++|.+...+.            .+++|+.|++++
T Consensus       111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~  170 (622)
T 3g06_A          111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLPA------------LPSELCKLWAYN  170 (622)
T ss_dssp             CCCCCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCS
T ss_pred             CcCCCCCC---CCCCcCEEECCCCC-CCcCCC----CCCCCCEEECcCCcCCCcCC------------ccCCCCEEECCC
Confidence            77776665   55667777777654 333443    23667777776665543221            234566666666


Q ss_pred             CCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccc
Q 013440          220 PDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS  299 (443)
Q Consensus       220 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  299 (443)
                      |.+..+|                           ..+++|+.|++++|.+.. ++  .    ..++|+.|++++|... .
T Consensus       171 N~l~~l~---------------------------~~~~~L~~L~Ls~N~l~~-l~--~----~~~~L~~L~L~~N~l~-~  215 (622)
T 3g06_A          171 NQLTSLP---------------------------MLPSGLQELSVSDNQLAS-LP--T----LPSELYKLWAYNNRLT-S  215 (622)
T ss_dssp             SCCSCCC---------------------------CCCTTCCEEECCSSCCSC-CC--C----CCTTCCEEECCSSCCS-S
T ss_pred             CCCCCCc---------------------------ccCCCCcEEECCCCCCCC-CC--C----ccchhhEEECcCCccc-c
Confidence            6665554                           234567777777766532 21  1    1278999999987554 3


Q ss_pred             cccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCc
Q 013440          300 VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR  379 (443)
Q Consensus       300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  379 (443)
                      ++.      .+++|++|++++| .++.++        ..+++|+.|+++++ .++.++.       .+++|+.|++++| 
T Consensus       216 l~~------~~~~L~~L~Ls~N-~L~~lp--------~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-  271 (622)
T 3g06_A          216 LPA------LPSGLKELIVSGN-RLTSLP--------VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-  271 (622)
T ss_dssp             CCC------CCTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-
T ss_pred             cCC------CCCCCCEEEccCC-ccCcCC--------CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-
Confidence            332      4589999999998 555442        56799999999996 6776654       4789999999986 


Q ss_pred             CcccccChhhhhcccccceeeeccCcccc
Q 013440          380 KLKYLFSFSMAKNLLRLQKVKVEDCDDLK  408 (443)
Q Consensus       380 ~l~~~~~~~~~~~~~~L~~L~i~~C~~l~  408 (443)
                      .++.+|.  .+.++++|+.|++.+++--.
T Consensus       272 ~L~~lp~--~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          272 QLTRLPE--SLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred             CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence            7778863  46789999999999986433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=7.7e-22  Score=200.81  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=41.7

Q ss_pred             cCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCcc
Q 013440          339 FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD  406 (443)
Q Consensus       339 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~  406 (443)
                      +++|+.|++++|. +++.....+  ...+++|++|++++|+. ++.+.......+++|+.|++++|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l--~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHV--LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHH--HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHHHHHH--HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            6777777777653 333221111  14478888888888875 5554444556788888888888865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=1.4e-18  Score=170.08  Aligned_cols=224  Identities=16%  Similarity=0.170  Sum_probs=181.4

Q ss_pred             ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L  110 (443)
                      +..+.++.|++++|.+..++.  ..++++|+.|++++|..  ..++...|.++++|++|++++|.++.+|. .+..+++|
T Consensus        61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  138 (440)
T 3zyj_A           61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL  138 (440)
T ss_dssp             CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred             CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence            456889999999999977764  33899999999999986  66666667999999999999999998775 58999999


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCC-CCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (443)
                      ++|++++|.+..  ...+.++++|++|++++| .+..++. .+.++++|+.|++++|. +..+|.  +..+++|+.|+++
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLS  215 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECT
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECC
Confidence            999999999988  357889999999999996 6666665 58899999999999965 456775  7889999999999


Q ss_pred             CCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEE
Q 013440          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMML  264 (443)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  264 (443)
                      +|.+....+        ..+..+++|++|++++|.+..++...  .+++|+.|++..+...... ...+..+++|+.|++
T Consensus       216 ~N~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          216 GNHLSAIRP--------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHL  286 (440)
T ss_dssp             TSCCCEECT--------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTTSSCTTCCEEEC
T ss_pred             CCccCccCh--------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHhccccCCCEEEc
Confidence            998876655        67889999999999999997766543  3478888888555443322 123456778888888


Q ss_pred             cCccccc
Q 013440          265 KGIKKVS  271 (443)
Q Consensus       265 ~~~~~~~  271 (443)
                      ++|....
T Consensus       287 ~~Np~~C  293 (440)
T 3zyj_A          287 HHNPWNC  293 (440)
T ss_dssp             CSSCEEC
T ss_pred             CCCCccC
Confidence            8876643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=1.4e-18  Score=170.62  Aligned_cols=223  Identities=17%  Similarity=0.152  Sum_probs=179.3

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L  110 (443)
                      +..++++.|++++|.+..+++.  .++++|+.|++++|..  ..++...|.++++|++|++++|.++.+|.. +..+++|
T Consensus        72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            4567899999999999777543  3899999999999986  556655578999999999999999987754 8889999


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCC-CCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (443)
                      ++|++++|.+..  ...+.++++|++|++++| .++.++. .+.++++|+.|++++|.+ ..+|.  +..+++|+.|+++
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPN--LTPLVGLEELEMS  226 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCC--CTTCTTCCEEECT
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-ccccc--ccccccccEEECc
Confidence            999999999988  357889999999999996 6776665 488999999999999654 45664  7889999999999


Q ss_pred             CCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEE
Q 013440          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMML  264 (443)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  264 (443)
                      +|.+....+        ..+..+++|++|++++|.+..++...  .+++|+.+++..+...... ...+..+++|+.|++
T Consensus       227 ~N~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          227 GNHFPEIRP--------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHL  297 (452)
T ss_dssp             TSCCSEECG--------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEEC
T ss_pred             CCcCcccCc--------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEc
Confidence            999877655        77899999999999999997665543  3478888888655443221 122456777888888


Q ss_pred             cCcccc
Q 013440          265 KGIKKV  270 (443)
Q Consensus       265 ~~~~~~  270 (443)
                      ++|...
T Consensus       298 ~~Np~~  303 (452)
T 3zyi_A          298 HHNPWN  303 (452)
T ss_dssp             CSSCEE
T ss_pred             cCCCcC
Confidence            887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=4.2e-18  Score=156.88  Aligned_cols=184  Identities=21%  Similarity=0.230  Sum_probs=155.6

Q ss_pred             hccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440           33 ETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  112 (443)
                      ...+++++.+++.++.++.+|... .+.++.|++++|.+  ..++...|.++++|++|++++|.++.++.. +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            456678999999999998888655 37899999999996  555555578999999999999999987764 78999999


Q ss_pred             EEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          113 LCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       113 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      |++++|.+.. +..+..+++|++|++++|.++.+|. .+.++++|+.|++++|.+ ..++...+..+++|+.|++++|.+
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcC
Confidence            9999999988 6778899999999999999998774 588999999999999654 456666678899999999999988


Q ss_pred             CcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc
Q 013440          191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF  229 (443)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  229 (443)
                      .....        ..+..+++|+.|++++|.+..+|..+
T Consensus       161 ~~l~~--------~~~~~l~~L~~L~L~~N~l~~ip~~~  191 (290)
T 1p9a_G          161 TELPA--------GLLNGLENLDTLLLQENSLYTIPKGF  191 (290)
T ss_dssp             SCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CccCH--------HHhcCcCCCCEEECCCCcCCccChhh
Confidence            76554        55678999999999999998887653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=8.5e-18  Score=153.35  Aligned_cols=197  Identities=21%  Similarity=0.294  Sum_probs=156.4

Q ss_pred             CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEec
Q 013440           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLD  116 (443)
Q Consensus        38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~  116 (443)
                      ..+.++++++.+..+|.... +.++.|++++|..  ..++...|.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            57789999999988876443 6899999999985  566665568899999999999999887755 5789999999999


Q ss_pred             CCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcc
Q 013440          117 WCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (443)
Q Consensus       117 ~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (443)
                      +|.+..  +..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+ ..++...+..+++|++|++++|.+...
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcEe
Confidence            999888  35678899999999999999877654 78899999999999654 456655578899999999999887665


Q ss_pred             cccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccc
Q 013440          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK  269 (443)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  269 (443)
                      .+        ..+..+++|++|++++|.+..++...                       +..+++|+.|++++|..
T Consensus       173 ~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------------~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          173 PE--------GAFDKLTELKTLKLDNNQLKRVPEGA-----------------------FDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CT--------TTTTTCTTCCEEECCSSCCSCCCTTT-----------------------TTTCTTCCEEECCSSCB
T ss_pred             Ch--------hHhccCCCcCEEECCCCcCCcCCHHH-----------------------hccccCCCEEEecCCCe
Confidence            54        55778899999999999887766532                       13455666677777655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=1.7e-19  Score=168.60  Aligned_cols=187  Identities=18%  Similarity=0.165  Sum_probs=148.1

Q ss_pred             cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440           35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  112 (443)
                      .+++++.|++++|.+..+++  ...+++|+.|++++|..  ...+.  +..+++|++|++++|.++.++    ..++|++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~  103 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELL----VGPSIET  103 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC--EEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC--Ccchh--hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence            35689999999999987764  34899999999999986  33443  689999999999999998766    3489999


Q ss_pred             EEecCCCCCCcccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          113 LCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       113 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      |++++|.+.... ...+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..+......+++|++|++++|.+.
T Consensus       104 L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          104 LHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             EECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            999999988722 1237889999999999997755 68889999999999987666555553457899999999999876


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEE
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIR  240 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~  240 (443)
                      ....          ...+++|++|++++|.+..++..+ .+++|+.+++.
T Consensus       183 ~~~~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~  222 (317)
T 3o53_A          183 DVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR  222 (317)
T ss_dssp             EEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred             cccc----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence            5432          335889999999999998776654 23555555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=2.5e-20  Score=189.64  Aligned_cols=346  Identities=14%  Similarity=0.043  Sum_probs=182.5

Q ss_pred             CCCCeEEeCCCC-CCCC--CCCcC-CCCCCcEEEcccCCCCCccC---cHHHHhcCCCCCEEEcCCCc--cc--cccccc
Q 013440           36 QKDPIAISLPHR-DIQE--LPERL-QCPNLQLFLLYTEGNGPMQV---SDHFFEGMEGLKVLQFPGIG--SS--SLPSSL  104 (443)
Q Consensus        36 ~~~l~~L~l~~~-~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~--~~--~~p~~l  104 (443)
                      ++++++|++.+| .+..  ++... .+++|++|++++|.. .+..   ...+...+++|++|++++|.  +.  .++..+
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV-DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEE-ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCcc-CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            456666666655 3321  22322 456666666665542 1111   11112245566666666554  11  122222


Q ss_pred             cCCCCCcEEEecCCC-CCC-cccccCCCCCCEEEcCCC-------------------------------CCCCCchhhcC
Q 013440          105 GRLINLQTLCLDWCE-LAD-IAAIGQLKKLEILSLAYS-------------------------------NINQLPVEIGQ  151 (443)
Q Consensus       105 ~~l~~L~~L~l~~~~-l~~-~~~~~~l~~L~~L~l~~~-------------------------------~~~~lp~~~~~  151 (443)
                      ..+++|++|++++|. +.. +..+.++++|+.|+++.+                               ....++..+..
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            345556666665552 222 233344444554443322                               22234444556


Q ss_pred             CCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecC---------CC
Q 013440          152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP---------DA  222 (443)
Q Consensus       152 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---------~~  222 (443)
                      +++|+.|++++|.+.......++..+++|++|++.+| ....       ........+++|++|++..+         .+
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~-------~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA-------GLEVLASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH-------HHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH-------HHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence            7888888888876443333334567888888888876 2211       11122345788888888542         22


Q ss_pred             CCCC-Ccc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEc--C---ccccccccccch---hhHhhcccceeec
Q 013440          223 EILP-PDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK--G---IKKVSILQENDG---TKMLLQRTEDLWL  291 (443)
Q Consensus       223 ~~~~-~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~---~~~~~~~~~~~~---~~~~~~~L~~L~L  291 (443)
                      .... ..+  .+++|+.+.+......+.........+++|+.|++.  +   |+.....+....   +...+++|+.|++
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence            1100 001  257888886654443322111112357889999998  2   222221111111   1223478999999


Q ss_pred             cccCCcccc-ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccccccc
Q 013440          292 ETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNL  370 (443)
Q Consensus       292 ~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L  370 (443)
                      ++  .+.+. ...+.  ..+++|++|++++|. ++   +.+.......+++|+.|++++|+. ++.....+  ...+++|
T Consensus       440 ~~--~l~~~~~~~l~--~~~~~L~~L~L~~~~-i~---~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~--~~~l~~L  508 (594)
T 2p1m_B          440 SG--LLTDKVFEYIG--TYAKKMEMLSVAFAG-DS---DLGMHHVLSGCDSLRKLEIRDCPF-GDKALLAN--ASKLETM  508 (594)
T ss_dssp             CS--SCCHHHHHHHH--HHCTTCCEEEEESCC-SS---HHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHT--GGGGGGS
T ss_pred             cC--cccHHHHHHHH--HhchhccEeeccCCC-Cc---HHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHH--HHhCCCC
Confidence            76  33222 11111  137899999999985 32   211111225589999999999864 43322111  2568999


Q ss_pred             ceeeeccCcCcccccChhhhhcccccceeeec
Q 013440          371 RIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE  402 (443)
Q Consensus       371 ~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~  402 (443)
                      ++|++++|+. +..+.......+|.|+...+.
T Consensus       509 ~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          509 RSLWMSSCSV-SFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             SEEEEESSCC-BHHHHHHHHHHCTTEEEEEEC
T ss_pred             CEEeeeCCCC-CHHHHHHHHHhCCCCEEEEec
Confidence            9999999976 444333444667777655544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=7.5e-18  Score=156.67  Aligned_cols=189  Identities=17%  Similarity=0.215  Sum_probs=145.4

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440           32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~  111 (443)
                      ....++++++|++.++.+..++....+++|+.|++++|..  ..++.  +.++++|++|++++|.++.++ .+..+++|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence            3445678899999999888888766889999999998875  55555  578899999999999888875 578888999


Q ss_pred             EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      +|++++|.+..+..+..+++|++|++++|.++.++. +..+++|+.|++++|.+ ..++.  +..+++|+.|++++|.+.
T Consensus       111 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh--hcCCCCCCEEECCCCccC
Confidence            999999988885568888999999999998887765 78888999999988654 34444  678888999998888775


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEE
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI  239 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l  239 (443)
                      ...          .+..+++|++|++++|.+..++....+++|+.+++
T Consensus       187 ~~~----------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l  224 (308)
T 1h6u_A          187 DIS----------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (308)
T ss_dssp             CCG----------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             cCh----------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEc
Confidence            432          26778888888888888866553223344444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=1.2e-17  Score=152.92  Aligned_cols=204  Identities=17%  Similarity=0.183  Sum_probs=91.3

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~  136 (443)
                      .|+.|++++|..  ..++...|.++++|++|++++|.++.++ ..+..+++|++|++++|.+..  +..+.++++|++|+
T Consensus        29 ~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            455555555543  3333323345555555555555554433 234555555555555555544  23445555555555


Q ss_pred             cCCCCCCCCch-hhcCCCCCCEEeccCCcccc-ccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCC-
Q 013440          137 LAYSNINQLPV-EIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT-  213 (443)
Q Consensus       137 l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~-  213 (443)
                      +++|.++.++. .+.++++|+.|++++|.+.. .+|.. +..+++|++|++++|.+.....     ..+..+..++.|. 
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~l~l  180 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQMPLLNL  180 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG-----GGGHHHHTCTTCCE
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH-----HHhhhhhhccccce
Confidence            55555554433 34555555555555543322 12332 4455555555555554443322     1112222222222 


Q ss_pred             EEEeecCCCCCCCCccc-cccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440          214 TLEIEVPDAEILPPDFV-SVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI  272 (443)
Q Consensus       214 ~L~l~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (443)
                      +|++++|.+..++...+ ..+|+.+++..+...... ...+..+++|+.|++++|.....
T Consensus       181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSCBCCC
T ss_pred             eeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccEEEccCCccccc
Confidence            45555555544443321 123333333222211110 01124456666666666655433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=4e-19  Score=175.73  Aligned_cols=144  Identities=18%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             CCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440           38 DPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (443)
Q Consensus        38 ~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l  115 (443)
                      +++.|++++|.+..+++  ...+++|++|++++|.. .. .++  +..+++|++|++++|.++.+|.    .++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YE-TLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EE-EEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CC-Ccc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            44555555544443332  11444455555554443 11 111  3444455555555544444332    144444555


Q ss_pred             cCCCCCCcccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          116 DWCELADIAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      ++|.+..+.. ..+++|+.|++++|.++.+ |..++++++|+.|++++|.+.+..|......+++|+.|++++|.+
T Consensus       107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            4444444110 1234444444444444433 223444444444444444333333332122344444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=2.6e-18  Score=160.25  Aligned_cols=248  Identities=14%  Similarity=0.048  Sum_probs=161.8

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHH------hcCCCCCEEEcCCCcccc-ccccc--
Q 013440           34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFF------EGMEGLKVLQFPGIGSSS-LPSSL--  104 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~~~-~p~~l--  104 (443)
                      +..++++.+.+.++.+ .+|.... ..|+.|++++|......++..++      .++++|++|++++|.++. +|..+  
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             ccCCCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            3345566777777777 5554331 11777777777652234454431      158888888888888874 66665  


Q ss_pred             cCCCCCcEEEecCCCCCC-cccccCC-----CCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCcccccc--chH-Hh
Q 013440          105 GRLINLQTLCLDWCELAD-IAAIGQL-----KKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVI--APN-VI  174 (443)
Q Consensus       105 ~~l~~L~~L~l~~~~l~~-~~~~~~l-----~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~--~~~-~l  174 (443)
                      ..+++|++|++++|.+.. +..++.+     ++|++|++++|.++.++ ..++++++|+.|++++|...+..  +.. .+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            778888888888888776 5555555     78888888888888665 56788888888888887655442  222 12


Q ss_pred             hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCC-Ccc--ccccCcEEEEEecCCCCCCCCc
Q 013440          175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP-PDF--VSVELQRYKIRIGDGPEDEFDP  251 (443)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~--~~~~L~~l~l~~~~~~~~~~~~  251 (443)
                      ..+++|++|++++|.+.....     .....+..+++|++|++++|.+...+ ...  .+++|+.+++..+......  .
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~  270 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSG-----VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP--K  270 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHH-----HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC--S
T ss_pred             ccCCCCCEEECCCCcCcchHH-----HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh--h
Confidence            677888888888887653221     01123356788888888888876544 222  3478888888655544221  1


Q ss_pred             hhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCc
Q 013440          252 LLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV  297 (443)
Q Consensus       252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (443)
                      .+.  ++|+.|++++|.+.+.   +. +.. +++|++|++++|+..
T Consensus       271 ~~~--~~L~~L~Ls~N~l~~~---p~-~~~-l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          271 GLP--AKLSVLDLSYNRLDRN---PS-PDE-LPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SCC--SEEEEEECCSSCCCSC---CC-TTT-SCEEEEEECTTCTTT
T ss_pred             hcc--CCceEEECCCCCCCCC---hh-Hhh-CCCCCEEeccCCCCC
Confidence            112  7889999999877443   22 333 388999999887643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=2.1e-18  Score=157.52  Aligned_cols=151  Identities=26%  Similarity=0.296  Sum_probs=69.0

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTL  113 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L  113 (443)
                      .+++++.|.+.++.+..++....+++|+.|++++|..  ..++ . +.++++|++|++++|.++.++. .++.+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3455555555555555554444555555555555543  2222 1 3455555555555555544332 23445555555


Q ss_pred             EecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          114 CLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       114 ~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      ++++|.+.. + ..++++++|++|++++|.++.++.. +.++++|+.|++++|.+. .++...+..+++|++|++++|.+
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcC
Confidence            555555444 1 2244455555555555544444332 344444444444443322 22222233444444444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=1.5e-17  Score=154.60  Aligned_cols=179  Identities=20%  Similarity=0.260  Sum_probs=141.7

Q ss_pred             eCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC
Q 013440           43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD  122 (443)
Q Consensus        43 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~  122 (443)
                      .+..+.+........+++|+.|+++++..  ..++.  +..+++|++|++++|.++.++. +..+++|++|++++|.+..
T Consensus        25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           25 AAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred             HhCCCCcCceecHHHcCCcCEEEeeCCCc--cCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence            34444444444445788999999999985  55653  5789999999999999998877 8999999999999999988


Q ss_pred             cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchh
Q 013440          123 IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS  202 (443)
Q Consensus       123 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  202 (443)
                      +..+..+++|++|++++|.++.++. +..+++|+.|++++|.+ ..++.  +..+++|+.|++++|.+...         
T Consensus       100 ~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~---------  166 (308)
T 1h6u_A          100 VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQVSDL---------  166 (308)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCC---------
T ss_pred             chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCcCCCC---------
Confidence            7788999999999999999998865 89999999999999654 44444  68899999999999877543         


Q ss_pred             hhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEE
Q 013440          203 LVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIR  240 (443)
Q Consensus       203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~  240 (443)
                       ..++.+++|+.|++++|.+..++....+++|+.+++.
T Consensus       167 -~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          167 -TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK  203 (308)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred             -hhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence             2278899999999999988776653233455555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=2.3e-17  Score=150.52  Aligned_cols=180  Identities=24%  Similarity=0.333  Sum_probs=153.9

Q ss_pred             ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L  110 (443)
                      ...+.+++|+++++.+..++.  ...+++|++|++++|..  ..++..+|.++++|++|++++|.++.+|. .+..+++|
T Consensus        34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  111 (270)
T 2o6q_A           34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL  111 (270)
T ss_dssp             CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred             CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence            345789999999999988875  34899999999999985  67788778899999999999999998764 56889999


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      ++|++++|.+..  +..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+ ..++...+..+++|++|++++
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDN  190 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEECCC
Confidence            999999999988  45688999999999999999988775 78999999999999654 445554578899999999999


Q ss_pred             CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCC
Q 013440          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI  224 (443)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  224 (443)
                      |.+.....        ..+..+++|+.|++++|.+..
T Consensus       191 N~l~~~~~--------~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          191 NQLKRVPE--------GAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             SCCSCCCT--------TTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCCcCCH--------HHhccccCCCEEEecCCCeeC
Confidence            98876554        557889999999999998743

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=3.8e-18  Score=152.77  Aligned_cols=199  Identities=13%  Similarity=0.185  Sum_probs=145.8

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCC-Ccccccc-c
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-S  102 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~p-~  102 (443)
                      +.+.+.  ....++.|+++++.++.++.  ...+++|+.|++++|.. ...++...|.++++|++|++++ |.++.++ .
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            444444  55678888888888877775  23788888888888862 2566665567888888888887 7887765 4


Q ss_pred             cccCCCCCcEEEecCCCCCCcccccCCCCCC---EEEcCCC-CCCCCchh-hcCCCCCC-EEeccCCccccccchHHhhc
Q 013440          103 SLGRLINLQTLCLDWCELADIAAIGQLKKLE---ILSLAYS-NINQLPVE-IGQLTRLQ-LLDLSNCWWLEVIAPNVISK  176 (443)
Q Consensus       103 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~---~L~l~~~-~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~  176 (443)
                      .+..+++|++|++++|.+..++.++.+.+|+   +|++++| .++.+|.. +.++++|+ .|++++|.+. .++...+..
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~  178 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG  178 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence            5778888888888888887744477777777   8888888 88877654 77888888 8888886543 666554444


Q ss_pred             CCCCcEEEccCCC-CCcccccCCCchhhhhccCC-CCCCEEEeecCCCCCCCCccccccCcEEEE
Q 013440          177 LSQLEELYMGNGF-SGWEKVEGGSNASLVELERL-TELTTLEIEVPDAEILPPDFVSVELQRYKI  239 (443)
Q Consensus       177 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l  239 (443)
                       ++|++|++++|. +.....        ..++.+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus       179 -~~L~~L~L~~n~~l~~i~~--------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          179 -TKLDAVYLNKNKYLTVIDK--------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             -CEEEEEECTTCTTCCEECT--------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             -CCCCEEEcCCCCCcccCCH--------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence             788888888884 654433        456677 8888888888888777765 4556666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=3.9e-19  Score=165.78  Aligned_cols=246  Identities=16%  Similarity=0.105  Sum_probs=166.7

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc--cccccc-------CCCCCcEEEecCCCCCC--ccc
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLG-------RLINLQTLCLDWCELAD--IAA  125 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~p~~l~-------~l~~L~~L~l~~~~l~~--~~~  125 (443)
                      ..++|+.|++++|..   .+|..+...   |++|++++|.+..  +|..+.       .+++|++|++++|.+..  +..
T Consensus        41 ~~~~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             cCCCceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            456788999999884   778776544   8999999999854  666655       79999999999999886  555


Q ss_pred             c--cCCCCCCEEEcCCCCCCCCchhhcCC-----CCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCC
Q 013440          126 I--GQLKKLEILSLAYSNINQLPVEIGQL-----TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG  198 (443)
Q Consensus       126 ~--~~l~~L~~L~l~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  198 (443)
                      +  +.+++|++|++++|.++.+|..+..+     ++|++|++++|.+.+..+. .++.+++|++|++++|.+.....   
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~---  190 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERG---  190 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHH---
T ss_pred             HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchH---
Confidence            4  88999999999999999878777776     9999999999766544434 48899999999999998644311   


Q ss_pred             Cchhhhhc--cCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccccc
Q 013440          199 SNASLVEL--ERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN  276 (443)
Q Consensus       199 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  276 (443)
                         .+..+  +.+++|++|++++|.+..++....                    ..+..+++|+.|++++|.+....+..
T Consensus       191 ---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          191 ---LISALCPLKFPTLQVLALRNAGMETPSGVCS--------------------ALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             ---HHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--------------------HHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             ---HHHHHHhccCCCCCEEECCCCcCcchHHHHH--------------------HHHhcCCCCCEEECCCCcCCcccchh
Confidence               12334  789999999999998874432110                    00123455555666665553332111


Q ss_pred             chhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccc
Q 013440          277 DGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL  350 (443)
Q Consensus       277 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  350 (443)
                      . +. .+++|+.|++++|... .++..+     .++|++|+++++ .++.++      ....+++|+.|++++.
T Consensus       248 ~-~~-~l~~L~~L~Ls~N~l~-~ip~~~-----~~~L~~L~Ls~N-~l~~~p------~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          248 S-CD-WPSQLNSLNLSFTGLK-QVPKGL-----PAKLSVLDLSYN-RLDRNP------SPDELPQVGNLSLKGN  306 (312)
T ss_dssp             C-CC-CCTTCCEEECTTSCCS-SCCSSC-----CSEEEEEECCSS-CCCSCC------CTTTSCEEEEEECTTC
T ss_pred             h-hh-hcCCCCEEECCCCccC-hhhhhc-----cCCceEEECCCC-CCCCCh------hHhhCCCCCEEeccCC
Confidence            1 11 1256666777666543 333321     156777777766 343332      2455677777777663

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=3.6e-18  Score=168.93  Aligned_cols=239  Identities=15%  Similarity=0.043  Sum_probs=188.9

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~  136 (443)
                      .+++|+.|++++|..  ..++...|.++++|++|++++|.++..++ ++.+++|++|++++|.+..+.   ..++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred             cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEE
Confidence            456899999999986  55555556899999999999999987665 899999999999999887622   238999999


Q ss_pred             cCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc-CCCCCCEE
Q 013440          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTL  215 (443)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L  215 (443)
                      +++|.++.++.  ..+++|+.|++++|.+.+..+.. ++.+++|+.|++++|.+....+        ..+. .+++|++|
T Consensus       106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--------~~l~~~l~~L~~L  174 (487)
T 3oja_A          106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF--------AELAASSDTLEHL  174 (487)
T ss_dssp             CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEG--------GGGGGGTTTCCEE
T ss_pred             CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcCh--------HHHhhhCCcccEE
Confidence            99999997765  35789999999998766655544 7889999999999999877554        4554 78999999


Q ss_pred             EeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccC
Q 013440          216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE  295 (443)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  295 (443)
                      ++++|.+..++....+++|+.|++..+......  +.+..+++|+.|++++|.+.+ +  +..+.. +++|+.|++++|+
T Consensus       175 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~~-l--p~~l~~-l~~L~~L~l~~N~  248 (487)
T 3oja_A          175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNNKLVL-I--EKALRF-SQNLEHFDLRGNG  248 (487)
T ss_dssp             ECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--GGGGGGTTCSEEECTTSCCCE-E--CTTCCC-CTTCCEEECTTCC
T ss_pred             ecCCCccccccccccCCCCCEEECCCCCCCCCC--HhHcCCCCccEEEecCCcCcc-c--chhhcc-CCCCCEEEcCCCC
Confidence            999999988877667899999999766655432  446788999999999998854 2  333333 3889999999988


Q ss_pred             Cc-cccccccccCCCCCCccEEEEecc
Q 013440          296 GV-QSVVHELDDGEGFPRLKRLLVTDC  321 (443)
Q Consensus       296 ~~-~~~~~~~~~~~~l~~L~~L~l~~~  321 (443)
                      .. ..++..+.   .++.|+.+++..+
T Consensus       249 l~c~~~~~~~~---~l~~L~~l~~~~~  272 (487)
T 3oja_A          249 FHCGTLRDFFS---KNQRVQTVAKQTV  272 (487)
T ss_dssp             BCHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             CcCcchHHHHH---hCCCCcEEecccc
Confidence            76 33333333   6788888877633

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=4.3e-17  Score=148.81  Aligned_cols=214  Identities=18%  Similarity=0.200  Sum_probs=170.7

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~  118 (443)
                      +..+.+..+.+........+++|+.|++.++..  ..++.  +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus        21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred             HHHHHhcCcccccccccccccceeeeeeCCCCc--ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence            344555566665555555889999999999985  45554  578999999999999998875 6889999999999999


Q ss_pred             CCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440          119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      .+.. + ..++++++|++|++++|.++.++.. +.++++|+.|++++|.+ ..++...+..+++|+.|++++|.+....+
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCcCccCH
Confidence            9988 3 5578999999999999999977665 78999999999999755 45555557899999999999998876554


Q ss_pred             cCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL  273 (443)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (443)
                              ..++.+++|++|++++|.+..++...  .+++|+.+++..+...        ..++.++.+.+..|.+.+.+
T Consensus       175 --------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          175 --------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGB
T ss_pred             --------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcc
Confidence                    55788999999999999998877654  4689999998544321        45677888888877765554


Q ss_pred             c
Q 013440          274 Q  274 (443)
Q Consensus       274 ~  274 (443)
                      +
T Consensus       239 p  239 (272)
T 3rfs_A          239 R  239 (272)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=2.6e-17  Score=150.63  Aligned_cols=197  Identities=22%  Similarity=0.245  Sum_probs=160.4

Q ss_pred             cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCc
Q 013440           35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQ  111 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~  111 (443)
                      ..+++++|+++++.+..++.  ..++++|++|++++|..  ..++...|.++++|++|++++|.++.++ ..+..+++|+
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence            45689999999999987774  33899999999999985  5666655789999999999999998865 6789999999


Q ss_pred             EEEecCCCCCC--cccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCCCc----EE
Q 013440          112 TLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE----EL  183 (443)
Q Consensus       112 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L  183 (443)
                      +|++++|.+..  ...++.+++|++|++++|.++.  +|..+.++++|+.|++++|.+.+..+. .+..+.+|+    .+
T Consensus       104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSL  182 (276)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCEEE
T ss_pred             EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhhccccceee
Confidence            99999999888  3468999999999999999985  788999999999999999765443333 355666666    89


Q ss_pred             EccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecC
Q 013440          184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGD  243 (443)
Q Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~  243 (443)
                      ++++|.+.....         ......+|++|++++|.+..++...  .+++|+.+++..+.
T Consensus       183 ~ls~n~l~~~~~---------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          183 DLSLNPMNFIQP---------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             ECCSSCCCEECT---------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             ecCCCcccccCc---------cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            999998865543         2223348999999999998888765  35899999985443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=5.3e-17  Score=149.58  Aligned_cols=177  Identities=23%  Similarity=0.294  Sum_probs=136.4

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440           32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~  111 (443)
                      ....+++++.|++.++.+..++....+++|+.|++++|..  ..++.  +.++++|++|++++|.++.++. +..+++|+
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  115 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK  115 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence            3445677888888888888887766888888888888875  44554  5788888888888888887654 78888888


Q ss_pred             EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      +|++++|.+..+..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+ ++.  +..+++|+.|++++|.+.
T Consensus       116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCC
Confidence            8888888887777778888888888888888877 567888888888888865443 433  677888888888888765


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (443)
                      ..          ..+..+++|+.|++++|.+...|.
T Consensus       192 ~l----------~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          192 DL----------RALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             BC----------GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CC----------hhhccCCCCCEEECcCCcccCCcc
Confidence            42          336778888888888887755443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=1.2e-16  Score=147.20  Aligned_cols=170  Identities=18%  Similarity=0.174  Sum_probs=140.8

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCCcccccCCCCCCEE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEIL  135 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L  135 (443)
                      +++++++++++++..  ..+|..+   .+.+++|++++|.++.+ +..+..+++|++|++++|.+..+...+.+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNL--TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCC--SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             ccCCccEEECCCCCC--CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            678899999999885  6777654   37899999999999875 56789999999999999999885445889999999


Q ss_pred             EcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEE
Q 013440          136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL  215 (443)
Q Consensus       136 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  215 (443)
                      ++++|.++.+|..+..+++|+.|++++|.+ ..++...+..+++|++|++++|.+....+        ..+..+++|+.|
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L  153 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKL  153 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEE
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccCh--------hhcccccCCCEE
Confidence            999999999999899999999999999654 45554458899999999999998876554        557789999999


Q ss_pred             EeecCCCCCCCCcc--ccccCcEEEEE
Q 013440          216 EIEVPDAEILPPDF--VSVELQRYKIR  240 (443)
Q Consensus       216 ~l~~~~~~~~~~~~--~~~~L~~l~l~  240 (443)
                      ++++|.+..+|...  .+++|+.+++.
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECC
Confidence            99999998888754  23555555553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=3e-17  Score=154.67  Aligned_cols=173  Identities=16%  Similarity=0.164  Sum_probs=123.2

Q ss_pred             CCCCeEEeCCCCCCCCCCCcC-CC--CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc--ccccccCCCCC
Q 013440           36 QKDPIAISLPHRDIQELPERL-QC--PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINL  110 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~p~~l~~l~~L  110 (443)
                      ....+++++.++.+.  +... .+  ++++.|++++|.. ....+. + .++++|++|++++|.++.  ++..+..+++|
T Consensus        46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-DQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-CSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             chhheeeccccccCC--HHHHHhhhhccceEEEcCCccc-cccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            345778888877654  1111 33  7888888888875 333333 3 468888888888888764  67777888888


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCC-CCC--CCchhhcCCCCCCEEeccCC-ccccc-cchHHhhcCC-CCcE
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNC-WWLEV-IAPNVISKLS-QLEE  182 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~~l~~l~-~L~~  182 (443)
                      ++|++++|.+.+  +..++.+++|++|++++| .++  .++..+.++++|+.|++++| .+.+. ++. .+..++ +|++
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~  199 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQ  199 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCE
Confidence            888888888775  567778888888888888 677  36667788888888888887 44433 333 367788 8888


Q ss_pred             EEccCCC--CCcccccCCCchhhhhccCCCCCCEEEeecCC
Q 013440          183 LYMGNGF--SGWEKVEGGSNASLVELERLTELTTLEIEVPD  221 (443)
Q Consensus       183 L~l~~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  221 (443)
                      |++++|.  +...       .....++.+++|++|++++|.
T Consensus       200 L~l~~~~~~~~~~-------~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          200 LNLSGYRKNLQKS-------DLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             EECCSCGGGSCHH-------HHHHHHHHCTTCSEEECTTCT
T ss_pred             EEeCCCcccCCHH-------HHHHHHhhCCCCCEEeCCCCC
Confidence            8888874  2211       223556778888888888887

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=1.8e-16  Score=142.89  Aligned_cols=177  Identities=21%  Similarity=0.278  Sum_probs=146.0

Q ss_pred             CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEe
Q 013440           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCL  115 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l  115 (443)
                      ...+++++.++.++.+|.... +.++.|++++|..  ..++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            346788999999988887554 6899999999986  5555555689999999999999998855 45788999999999


Q ss_pred             cCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          116 DWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       116 ~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      ++|.+..  +..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+ ..++...+..+++|++|++++|.+..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999888  36678899999999999999988765 68899999999999654 45655447889999999999998876


Q ss_pred             ccccCCCchhhhhccCCCCCCEEEeecCCCCCC
Q 013440          193 EKVEGGSNASLVELERLTELTTLEIEVPDAEIL  225 (443)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  225 (443)
                      ..+        ..+..+++|++|++++|.+...
T Consensus       170 ~~~--------~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPH--------GAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCT--------TTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCH--------HHHhCCCCCCEEEeeCCceeCC
Confidence            554        5678889999999999988654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=1.8e-17  Score=148.36  Aligned_cols=204  Identities=15%  Similarity=0.158  Sum_probs=151.9

Q ss_pred             CCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCc-cccccc-cccCCCCCcEEEecC-CCCCC--c
Q 013440           49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPS-SLGRLINLQTLCLDW-CELAD--I  123 (443)
Q Consensus        49 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~p~-~l~~l~~L~~L~l~~-~~l~~--~  123 (443)
                      ++.+|.  -.+.|+.|++++|..  ..++...|.++++|++|++++|. ++.++. .+..+++|++|++++ +.+..  +
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            666776  345899999999985  66776667899999999999997 888764 688999999999998 88887  3


Q ss_pred             ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCC---EEeccCCccccccchHHhhcCCCCc-EEEccCCCCCcccccCCC
Q 013440          124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ---LLDLSNCWWLEVIAPNVISKLSQLE-ELYMGNGFSGWEKVEGGS  199 (443)
Q Consensus       124 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~  199 (443)
                      ..+.++++|++|++++|.++.+|. +..+++|+   .|++++|.....++...+..+++|+ .|++++|.+.....    
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----  173 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----  173 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----
Confidence            678899999999999999998887 88888888   9999997456667665578899999 99999888764432    


Q ss_pred             chhhhhccCCCCCCEEEeecCC-CCCCCCccccccCcEEEEEecCCCCCCCCchhccc-ccceeEEEcCccccccccccc
Q 013440          200 NASLVELERLTELTTLEIEVPD-AEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLMMLKGIKKVSILQEND  277 (443)
Q Consensus       200 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~  277 (443)
                          ..+.. ++|++|++++|. +..++...                       +..+ ++|+.|++++|.+. .++.. 
T Consensus       174 ----~~~~~-~~L~~L~L~~n~~l~~i~~~~-----------------------~~~l~~~L~~L~l~~N~l~-~l~~~-  223 (239)
T 2xwt_C          174 ----YAFNG-TKLDAVYLNKNKYLTVIDKDA-----------------------FGGVYSGPSLLDVSQTSVT-ALPSK-  223 (239)
T ss_dssp             ----TTTTT-CEEEEEECTTCTTCCEECTTT-----------------------TTTCSBCCSEEECTTCCCC-CCCCT-
T ss_pred             ----hhcCC-CCCCEEEcCCCCCcccCCHHH-----------------------hhccccCCcEEECCCCccc-cCChh-
Confidence                23333 688899999884 76665432                       1344 56666666666553 22211 


Q ss_pred             hhhHhhcccceeeccccC
Q 013440          278 GTKMLLQRTEDLWLETLE  295 (443)
Q Consensus       278 ~~~~~~~~L~~L~L~~~~  295 (443)
                          .+++|+.|++.++.
T Consensus       224 ----~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          224 ----GLEHLKELIARNTW  237 (239)
T ss_dssp             ----TCTTCSEEECTTC-
T ss_pred             ----HhccCceeeccCcc
Confidence                23677777776553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=1.5e-17  Score=156.81  Aligned_cols=123  Identities=18%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcC--CCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC---cccccCCCCCCE
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGM--EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEI  134 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~  134 (443)
                      .++.++++++.. .    ...+..+  ..+++|+++++.+...+..+..+++|++|++++|.+..   +..++.+++|++
T Consensus        48 ~~~~l~l~~~~~-~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNL-H----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBC-C----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccC-C----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            356666666554 1    2223444  66666666666666544445556666666666665543   244555566666


Q ss_pred             EEcCCCCCC-CCchhhcCCCCCCEEeccCCccccc--cchHHhhcCCCCcEEEccCC
Q 013440          135 LSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNG  188 (443)
Q Consensus       135 L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~  188 (443)
                      |++++|.++ ..+..+.++++|+.|++++|.....  ++. .+..+++|++|++++|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWC  178 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence            666665554 3444455555555555555522221  222 2444555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.70  E-value=2.8e-17  Score=153.07  Aligned_cols=225  Identities=14%  Similarity=0.066  Sum_probs=152.1

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHH--HhcCCCCCEEEcCCCcccc-ccccc--cCCCCCcEEEecCCCCCC--c----cc
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHF--FEGMEGLKVLQFPGIGSSS-LPSSL--GRLINLQTLCLDWCELAD--I----AA  125 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-~p~~l--~~l~~L~~L~l~~~~l~~--~----~~  125 (443)
                      ....++.+.+.++.. .......+  +..+..|++|++++|.+.. .|..+  ..+++|++|++++|.+..  +    ..
T Consensus        62 ~~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           62 KALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SSCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hhcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            445677788877664 22111111  1245679999999988875 56665  788899999999988775  1    33


Q ss_pred             ccCCCCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCccccc--cc-hHHhhcCCCCcEEEccCCCCCcccccCCCch
Q 013440          126 IGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEV--IA-PNVISKLSQLEELYMGNGFSGWEKVEGGSNA  201 (443)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  201 (443)
                      +..+++|++|++++|.++.++ ..+.++++|+.|++++|.+.+.  ++ ...+..+++|++|++++|.+.....      
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------  214 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------  214 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH------
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH------
Confidence            457888999999999888655 4578889999999988765442  21 1113578889999998887753321      


Q ss_pred             hhh-hccCCCCCCEEEeecCCCCCC-CCcc-cc---ccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440          202 SLV-ELERLTELTTLEIEVPDAEIL-PPDF-VS---VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (443)
Q Consensus       202 ~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~-~~---~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (443)
                      ... .++.+++|++|++++|.+... |..+ .+   ++|+.+++..+......  .  ...++|+.|++++|.+.+. +.
T Consensus       215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp--~--~~~~~L~~L~Ls~N~l~~~-~~  289 (310)
T 4glp_A          215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP--K--GLPAKLRVLDLSSNRLNRA-PQ  289 (310)
T ss_dssp             HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC--S--CCCSCCSCEECCSCCCCSC-CC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh--h--hhcCCCCEEECCCCcCCCC-ch
Confidence            112 246788899999998888665 5444 22   68888888666554322  1  1237899999999887532 22


Q ss_pred             cchhhHhhcccceeeccccCCc
Q 013440          276 NDGTKMLLQRTEDLWLETLEGV  297 (443)
Q Consensus       276 ~~~~~~~~~~L~~L~L~~~~~~  297 (443)
                      +   . .+++|+.|++++|+..
T Consensus       290 ~---~-~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          290 P---D-ELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             T---T-SCCCCSCEECSSTTTS
T ss_pred             h---h-hCCCccEEECcCCCCC
Confidence            2   2 2388999999988653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=4.1e-16  Score=157.38  Aligned_cols=179  Identities=21%  Similarity=0.287  Sum_probs=154.2

Q ss_pred             hhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440           31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL  110 (443)
Q Consensus        31 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L  110 (443)
                      .....+..++.|++.++.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.+..+| .+..+++|
T Consensus        37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L  111 (605)
T 1m9s_A           37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKL  111 (605)
T ss_dssp             ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred             cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence            34566788999999999999998877999999999999986  55555  689999999999999998876 68899999


Q ss_pred             cEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       111 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      ++|++++|.+..+..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..+   +..+++|+.|++++|.+
T Consensus       112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCC
Confidence            99999999998877899999999999999999987 678999999999999976654444   68899999999999987


Q ss_pred             CcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc
Q 013440          191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (443)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (443)
                      ...          ..+..+++|+.|++++|.+...|..
T Consensus       188 ~~l----------~~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          188 SDL----------RALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             CBC----------GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred             CCC----------hHHccCCCCCEEEccCCcCcCCccc
Confidence            542          4578899999999999987655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=1.3e-15  Score=140.18  Aligned_cols=182  Identities=21%  Similarity=0.236  Sum_probs=143.3

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~  118 (443)
                      +..+.+....+..+.....+++|+.|++++|..  ..++.  +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus        26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             HHHHHhcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence            334455666665555555788999999999985  55554  5789999999999999998877 889999999999999


Q ss_pred             CCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCC
Q 013440          119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG  198 (443)
Q Consensus       119 ~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  198 (443)
                      .+..+..++.+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+ ++  .+..+++|+.|++++|.+....    
T Consensus       101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~----  172 (291)
T 1h6t_A          101 KVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIV----  172 (291)
T ss_dssp             CCCCGGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCG----
T ss_pred             cCCCChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccch----
Confidence            998877799999999999999999887 468899999999999976544 43  3788999999999999875432    


Q ss_pred             CchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEE
Q 013440          199 SNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI  239 (443)
Q Consensus       199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l  239 (443)
                            .++.+++|+.|++++|.+..++....+++|+.+++
T Consensus       173 ------~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l  207 (291)
T 1h6t_A          173 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  207 (291)
T ss_dssp             ------GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred             ------hhcCCCccCEEECCCCcCCCChhhccCCCCCEEEC
Confidence                  27788999999999998876654223344444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=2e-17  Score=159.00  Aligned_cols=264  Identities=12%  Similarity=-0.010  Sum_probs=155.1

Q ss_pred             hccCCCCeEEeCCCCCCCCC-----CC-cCCCCCCcEEEcccCCC--CCccCcHHH------HhcCCCCCEEEcCCCccc
Q 013440           33 ETIQKDPIAISLPHRDIQEL-----PE-RLQCPNLQLFLLYTEGN--GPMQVSDHF------FEGMEGLKVLQFPGIGSS   98 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l-----~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~------~~~l~~L~~L~l~~~~~~   98 (443)
                      ....+++++|++++|.+...     .. ...+++|+.|++++|..  ....+|..+      +..+++|++|++++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            44567788888888776432     11 22677888888887642  122334433      357788888888888776


Q ss_pred             c-----ccccccCCCCCcEEEecCCCCCC--cc----cccCC---------CCCCEEEcCCCCCC--CCc---hhhcCCC
Q 013440           99 S-----LPSSLGRLINLQTLCLDWCELAD--IA----AIGQL---------KKLEILSLAYSNIN--QLP---VEIGQLT  153 (443)
Q Consensus        99 ~-----~p~~l~~l~~L~~L~l~~~~l~~--~~----~~~~l---------~~L~~L~l~~~~~~--~lp---~~~~~l~  153 (443)
                      .     +|..+..+++|++|++++|.+..  +.    .+..+         ++|++|++++|.++  .++   ..+.+++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            5     56677778888888888887754  22    23333         78888888888776  344   3566777


Q ss_pred             CCCEEeccCCccccc----cchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc
Q 013440          154 RLQLLDLSNCWWLEV----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF  229 (443)
Q Consensus       154 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  229 (443)
                      +|+.|++++|.+...    +....+..+++|+.|++++|.+.....    ...+..+..+++|++|++++|.+.......
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----HHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            888888888654422    112125677788888888777642211    122355677778888888877764321100


Q ss_pred             ccccCcEEEEEecCCCCCCCCchh--cccccceeEEEcCcccccc--ccccchhhHhhcccceeeccccCCccccc--cc
Q 013440          230 VSVELQRYKIRIGDGPEDEFDPLL--VKSEASRLMMLKGIKKVSI--LQENDGTKMLLQRTEDLWLETLEGVQSVV--HE  303 (443)
Q Consensus       230 ~~~~L~~l~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~  303 (443)
                      ..                   ..+  ..+++|+.|++++|.+...  ...+..+...+++|++|++++|......+  ..
T Consensus       264 l~-------------------~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~  324 (386)
T 2ca6_A          264 VV-------------------DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE  324 (386)
T ss_dssp             HH-------------------HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHH
T ss_pred             HH-------------------HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHH
Confidence            00                   011  1256677777777665431  01223332334778888887776554332  11


Q ss_pred             cccCCCCCCccEEEEecc
Q 013440          304 LDDGEGFPRLKRLLVTDC  321 (443)
Q Consensus       304 ~~~~~~l~~L~~L~l~~~  321 (443)
                      +  ...++.++.+++...
T Consensus       325 l--~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          325 I--REVFSTRGRGELDEL  340 (386)
T ss_dssp             H--HHHHHHHTCCEECCC
T ss_pred             H--HHHhhhcCcchhhhc
Confidence            1  123556665566554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=2.6e-15  Score=142.15  Aligned_cols=219  Identities=15%  Similarity=0.067  Sum_probs=110.1

Q ss_pred             CCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcE-EEccCCCCCcccccCCCchhhhhccC
Q 013440          131 KLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE-LYMGNGFSGWEKVEGGSNASLVELER  208 (443)
Q Consensus       131 ~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~~l~~  208 (443)
                      ++++|++++|+++.+|.. +.++++|+.|++++|.+.+.++...+..++++++ +.+..|.+....+        ..++.
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~--------~~f~~  102 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP--------EAFQN  102 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT--------TSBCC
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc--------hhhhh
Confidence            344444444444444432 4445555555555544444444333444444443 2233344333322        34455


Q ss_pred             CCCCCEEEeecCCCCCCCCcccc--ccCcEEEEEecCCCCCCCCchh-cccccceeEEEcCccccccccccchhhHhhcc
Q 013440          209 LTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL-VKSEASRLMMLKGIKKVSILQENDGTKMLLQR  285 (443)
Q Consensus       209 l~~L~~L~l~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  285 (443)
                      +++|++|++++|.+..++.....  .++..+.+.............+ .....++.|++++|.+.. ++.  ..... .+
T Consensus       103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~--~~f~~-~~  178 (350)
T 4ay9_X          103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHN--SAFNG-TQ  178 (350)
T ss_dssp             CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECT--TSSTT-EE
T ss_pred             ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CCh--hhccc-cc
Confidence            55666666666665555543322  2233333321111000000011 223456777777776632 221  11112 56


Q ss_pred             cceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccc
Q 013440          286 TEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQ  365 (443)
Q Consensus       286 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  365 (443)
                      ++.+.+.++..+..++...  ...+++|++|+++++ .++.++       ...|..|+.|.+.++.+++.++.     ..
T Consensus       179 L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N-~l~~lp-------~~~~~~L~~L~~l~~~~l~~lP~-----l~  243 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDV--FHGASGPVILDISRT-RIHSLP-------SYGLENLKKLRARSTYNLKKLPT-----LE  243 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTS-CCCCCC-------SSSCTTCCEEECTTCTTCCCCCC-----TT
T ss_pred             hhHHhhccCCcccCCCHHH--hccCcccchhhcCCC-CcCccC-------hhhhccchHhhhccCCCcCcCCC-----ch
Confidence            7777777766666665432  136778888888877 455553       24466777777777777766653     35


Q ss_pred             cccccceeeec
Q 013440          366 SFSNLRIINVD  376 (443)
Q Consensus       366 ~~~~L~~L~i~  376 (443)
                      .+++|+.+++.
T Consensus       244 ~l~~L~~l~l~  254 (350)
T 4ay9_X          244 KLVALMEASLT  254 (350)
T ss_dssp             TCCSCCEEECS
T ss_pred             hCcChhhCcCC
Confidence            57777777774

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=5.9e-16  Score=144.09  Aligned_cols=221  Identities=12%  Similarity=0.022  Sum_probs=165.1

Q ss_pred             cCCCCeEEeCCCCCCCC-----CCCcCCCCCCcEEEcccCCCCCccCcHHHH-hcCCCCCEEEcCCCccccc-c----cc
Q 013440           35 IQKDPIAISLPHRDIQE-----LPERLQCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSL-P----SS  103 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-p----~~  103 (443)
                      ....++.+.+.+..+..     +.....+++|+.|++++|.. ....+..++ .++++|++|++++|.++.. +    ..
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            34457888888776621     11223567799999999986 555555543 7899999999999998752 2    33


Q ss_pred             ccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCC---Cchh--hcCCCCCCEEeccCCccccccch---HH
Q 013440          104 LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ---LPVE--IGQLTRLQLLDLSNCWWLEVIAP---NV  173 (443)
Q Consensus       104 l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~---lp~~--~~~l~~L~~L~l~~~~~~~~~~~---~~  173 (443)
                      +..+++|++|++++|.+..  +..++.+++|++|++++|.+..   ++..  +.++++|+.|++++|.+ ..++.   ..
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l  219 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL  219 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence            4578999999999999877  4778899999999999998763   4333  46899999999999765 33332   23


Q ss_pred             hhcCCCCcEEEccCCCCCcccccCCCchhhhhccC---CCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCC
Q 013440          174 ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER---LTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFD  250 (443)
Q Consensus       174 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  250 (443)
                      ++.+++|++|++++|.+....+        ..+..   +++|++|++++|.+..+|..+. ++|+.+++..+.....   
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~---  287 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVN--------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRA---  287 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCC--------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSC---
T ss_pred             HhcCCCCCEEECCCCCCCccch--------hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCC---
Confidence            5778999999999998876533        33334   4799999999999998888754 8999999977665543   


Q ss_pred             chhcccccceeEEEcCccc
Q 013440          251 PLLVKSEASRLMMLKGIKK  269 (443)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~  269 (443)
                      +....+++|+.|++++|.+
T Consensus       288 ~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          288 PQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCTTSCCCCSCEECSSTTT
T ss_pred             chhhhCCCccEEECcCCCC
Confidence            2246789999999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.64  E-value=2.3e-17  Score=158.61  Aligned_cols=141  Identities=12%  Similarity=0.067  Sum_probs=74.8

Q ss_pred             cccccceeEEEcCccccccc--cc-cchhhHhhcccceeeccccCCc----cccccccccCCCCCCccEEEEecccCcee
Q 013440          254 VKSEASRLMMLKGIKKVSIL--QE-NDGTKMLLQRTEDLWLETLEGV----QSVVHELDDGEGFPRLKRLLVTDCSEILH  326 (443)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~~--~~-~~~~~~~~~~L~~L~L~~~~~~----~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  326 (443)
                      ..+++|+.|++++|.+....  .. +..+.. +++|+.|+|++|...    ..++..+.   .+++|++|+|++|. ++.
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~---~~~~L~~L~L~~n~-i~~  258 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALK---SWPNLRELGLNDCL-LSA  258 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGG---GCTTCCEEECTTCC-CCH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHc---cCCCcCEEECCCCC-Cch
Confidence            34556666666666543110  00 112222 267777777777643    33333333   67888888888874 322


Q ss_pred             eccccccccc--CccCcccceeccccccccc-----cccccccccccccccceeeeccCcCccccc--Chhhhhcccccc
Q 013440          327 IVGSVRRVRC--EVFPLLEALSLMFLTNLET-----ICYSQLREDQSFSNLRIINVDSCRKLKYLF--SFSMAKNLLRLQ  397 (443)
Q Consensus       327 ~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~--~~~~~~~~~~L~  397 (443)
                      ..........  ..+++|+.|++++| .++.     ++.. +  ...+++|++|++++|+ ++...  ...+...++.++
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~-l--~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~  333 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTV-I--DEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRG  333 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHH-H--HHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHH-H--HhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcC
Confidence            1100000112  33788888888876 4544     3221 0  1347889999998864 44433  133444566666


Q ss_pred             eeeeccC
Q 013440          398 KVKVEDC  404 (443)
Q Consensus       398 ~L~i~~C  404 (443)
                      .+++..-
T Consensus       334 ~~~l~~~  340 (386)
T 2ca6_A          334 RGELDEL  340 (386)
T ss_dssp             CCEECCC
T ss_pred             cchhhhc
Confidence            6666443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=4.1e-16  Score=157.39  Aligned_cols=184  Identities=21%  Similarity=0.232  Sum_probs=148.7

Q ss_pred             CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecC
Q 013440           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW  117 (443)
Q Consensus        38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~  117 (443)
                      .+..+.+..+.+..+.....++.|+.|++++|..  ..++.  +..+++|+.|++++|.++.++. +..+++|++|++++
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence            3445566666666666656889999999999985  55554  5889999999999999998876 88999999999999


Q ss_pred             CCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC
Q 013440          118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG  197 (443)
Q Consensus       118 ~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  197 (443)
                      |.+..++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.. ++  .+..+++|+.|++++|.+....   
T Consensus        97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~---  169 (605)
T 1m9s_A           97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIV---  169 (605)
T ss_dssp             SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCG---
T ss_pred             CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCCch---
Confidence            99988778999999999999999998874 58899999999999976544 43  3789999999999999876432   


Q ss_pred             CCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEE
Q 013440          198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIR  240 (443)
Q Consensus       198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~  240 (443)
                            . +..+++|+.|++++|.+..++....+++|+.|++.
T Consensus       170 ------~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          170 ------P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  205 (605)
T ss_dssp             ------G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred             ------h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence                  2 78899999999999988776543345666666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=5.2e-15  Score=133.27  Aligned_cols=157  Identities=21%  Similarity=0.269  Sum_probs=133.7

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L  110 (443)
                      +..+.++.|+++++.+..+++.  .++++|+.|++++|..  ..++...|.++++|++|++++|.++.+| ..+..+++|
T Consensus        32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (251)
T 3m19_A           32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL  109 (251)
T ss_dssp             CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence            3557899999999999777653  3899999999999986  5566666789999999999999999876 557899999


Q ss_pred             cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      ++|++++|.+.. + ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+. .++...+..+++|+.|++++
T Consensus       110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeC
Confidence            999999999988 3 457899999999999999998877 5889999999999997654 55544588999999999999


Q ss_pred             CCCCcc
Q 013440          188 GFSGWE  193 (443)
Q Consensus       188 ~~~~~~  193 (443)
                      |.+...
T Consensus       189 N~~~c~  194 (251)
T 3m19_A          189 NQFDCS  194 (251)
T ss_dssp             CCBCTT
T ss_pred             CceeCC
Confidence            987543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=2.7e-15  Score=129.89  Aligned_cols=150  Identities=19%  Similarity=0.205  Sum_probs=91.8

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC--cccccCCCCCCE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI  134 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~  134 (443)
                      .+++|+.|++++|..  ..++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.+..  +..++.+++|++
T Consensus        42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            455666666666664  3444 2 356666666666666555443 45666667777777666655  566666677777


Q ss_pred             EEcCCCCCCC-CchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCC
Q 013440          135 LSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT  213 (443)
Q Consensus       135 L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  213 (443)
                      |++++|.++. .|..+.++++|+.|++++|...+.++.  +..+++|+.|++++|.+...          ..+..+++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~  184 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLN  184 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCC
Confidence            7777776663 555566677777777776554555552  56667777777776655431          2455666777


Q ss_pred             EEEeecCCCC
Q 013440          214 TLEIEVPDAE  223 (443)
Q Consensus       214 ~L~l~~~~~~  223 (443)
                      +|++++|.+.
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            7777766653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.8e-15  Score=130.93  Aligned_cols=150  Identities=19%  Similarity=0.236  Sum_probs=129.3

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCcE
Q 013440           34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQT  112 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~~  112 (443)
                      ..++++++|+++++.+..++....+++|+.|++++|..  ..++ . +..+++|++|++++|.++. .+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            55678999999999999988766999999999999964  4444 2 5889999999999999986 6788999999999


Q ss_pred             EEecCCCCCC--cccccCCCCCCEEEcCCCC-CCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          113 LCLDWCELAD--IAAIGQLKKLEILSLAYSN-INQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       113 L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      |++++|.+.+  +..++.+++|++|++++|. ++.+| .+.++++|+.|++++|.+. .++.  +..+++|++|++++|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~~--l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYRG--IEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCTT--GGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChHH--hccCCCCCEEEeeCcc
Confidence            9999999987  7889999999999999997 88887 6899999999999997654 4552  7899999999999987


Q ss_pred             CC
Q 013440          190 SG  191 (443)
Q Consensus       190 ~~  191 (443)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=8.4e-16  Score=139.32  Aligned_cols=173  Identities=18%  Similarity=0.185  Sum_probs=129.3

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~  114 (443)
                      .+.++..+.+.++.+..++....+++|+.|++++|..  ..++ . +..+++|++|++++|.++.++. +..+++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            3444666677777777776555788888888888875  5555 2 5778888888888888888776 78888888888


Q ss_pred             ecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (443)
Q Consensus       115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (443)
                      +++|.+..++.+.. ++|++|++++|.++.++ .+.++++|+.|++++|.+ ..++.  +..+++|+.|++++|.+... 
T Consensus        92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCBC-
T ss_pred             CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcch-
Confidence            88888877433444 88888888888888775 578888888888888654 44442  67888888888888876543 


Q ss_pred             ccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (443)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (443)
                               ..+..+++|+.|++++|.+...|.
T Consensus       166 ---------~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          166 ---------GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             ---------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             ---------HHhccCCCCCEEeCCCCcccCCcc
Confidence                     446778888888888887765543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=5.1e-15  Score=140.17  Aligned_cols=148  Identities=17%  Similarity=0.152  Sum_probs=83.9

Q ss_pred             EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-cc-ccccCCCCCcE-EEecC
Q 013440           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LP-SSLGRLINLQT-LCLDW  117 (443)
Q Consensus        41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p-~~l~~l~~L~~-L~l~~  117 (443)
                      .++.++++++++|..+ .++++.|++++|.+  ..++...|.++++|++|++++|.+.+ +| ..|.+++++++ +.++.
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4555556666666543 35677777777764  56666556677777777777776643 44 23556666554 34444


Q ss_pred             CCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCC-CCcEEEccCCCCC
Q 013440          118 CELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG  191 (443)
Q Consensus       118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  191 (443)
                      +.+..  +..++.+++|++|++++|.++.+|.. +....++..+++.++..+..++...+..+. .++.|++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            55555  35566667777777776666655442 344555566666554444444443333332 3455555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=1.5e-15  Score=144.49  Aligned_cols=243  Identities=9%  Similarity=-0.008  Sum_probs=103.6

Q ss_pred             CCCCCEEEcCCCcccccc-----ccccCCC-CCcEEEecCCCCCC--cccccCC-----CCCCEEEcCCCCCCCCc-h--
Q 013440           84 MEGLKVLQFPGIGSSSLP-----SSLGRLI-NLQTLCLDWCELAD--IAAIGQL-----KKLEILSLAYSNINQLP-V--  147 (443)
Q Consensus        84 l~~L~~L~l~~~~~~~~p-----~~l~~l~-~L~~L~l~~~~l~~--~~~~~~l-----~~L~~L~l~~~~~~~lp-~--  147 (443)
                      ..+|++|++++|.++..+     ..+..++ +|++|++++|.+.+  +..+..+     ++|++|++++|.++..+ .  
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            333555555555554432     3344444 55555555555443  2222222     55555555555554222 1  


Q ss_pred             --hhcCC-CCCCEEeccCCccccccchHH---hhc-CCCCcEEEccCCCCCcccccCCCchhhhhccCCC-CCCEEEeec
Q 013440          148 --EIGQL-TRLQLLDLSNCWWLEVIAPNV---ISK-LSQLEELYMGNGFSGWEKVEGGSNASLVELERLT-ELTTLEIEV  219 (443)
Q Consensus       148 --~~~~l-~~L~~L~l~~~~~~~~~~~~~---l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~  219 (443)
                        .+..+ ++|+.|++++|.+.+..+...   +.. .++|++|++++|.+.....    ......+..++ +|++|++++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS----DELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH----HHHHHHHhcCCccccEeeecC
Confidence              12233 555555555544332222111   122 2355666665555443221    11122333333 566666665


Q ss_pred             CCCCCCCCccccccCcEEEEEecCCCCCCCCchhccc-ccceeEEEcCcccccccc--ccchhhHhhcccceeeccccCC
Q 013440          220 PDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLMMLKGIKKVSILQ--ENDGTKMLLQRTEDLWLETLEG  296 (443)
Q Consensus       220 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~  296 (443)
                      |.+.........                   ..+..+ ++|+.|++++|.+.....  .+..+....++|+.|++++|..
T Consensus       177 n~l~~~~~~~l~-------------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          177 NNLASKNCAELA-------------------KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             SCGGGSCHHHHH-------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             CCCchhhHHHHH-------------------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            555332221000                   001122 355555555554422110  1112222224677777776654


Q ss_pred             cccccccc-ccCCCCCCccEEEEecccCceeeccc---ccccccCccCcccceecccc
Q 013440          297 VQSVVHEL-DDGEGFPRLKRLLVTDCSEILHIVGS---VRRVRCEVFPLLEALSLMFL  350 (443)
Q Consensus       297 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~~~~~~~L~~L~l~~c  350 (443)
                      .......+ .....+++|++|++++|. +..+...   ........++.|+.|++++.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            33211000 002366778888888773 1111110   00113345566666777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=7.6e-15  Score=133.00  Aligned_cols=156  Identities=21%  Similarity=0.197  Sum_probs=134.4

Q ss_pred             hhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCC
Q 013440           29 KKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI  108 (443)
Q Consensus        29 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~  108 (443)
                      +......+++++.|++.++.+..++....+++|+.|++++|..  ..++.  +.++++|++|++++|.++.+|....  +
T Consensus        33 ~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~  106 (263)
T 1xeu_A           33 DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--A  106 (263)
T ss_dssp             SEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred             cccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--C
Confidence            3345567799999999999999998777999999999999986  55665  6899999999999999998876443  9


Q ss_pred             CCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440          109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (443)
Q Consensus       109 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (443)
                      +|++|++++|.+..+..++.+++|++|++++|.++.++ .+..+++|+.|++++|.+.+. .  .+..+++|+.|++++|
T Consensus       107 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          107 CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G--GLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             SCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T--TSTTCCCCCEEEEEEE
T ss_pred             cccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H--HhccCCCCCEEeCCCC
Confidence            99999999999988777999999999999999999886 689999999999999766554 3  3789999999999998


Q ss_pred             CCCccc
Q 013440          189 FSGWEK  194 (443)
Q Consensus       189 ~~~~~~  194 (443)
                      .+...+
T Consensus       183 ~~~~~~  188 (263)
T 1xeu_A          183 KCVNEP  188 (263)
T ss_dssp             EEECCC
T ss_pred             cccCCc
Confidence            775543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=6.2e-15  Score=128.75  Aligned_cols=169  Identities=18%  Similarity=0.236  Sum_probs=110.0

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~~  118 (443)
                      +.+...++.+..+|... .++|+.|++++|..  ..++...|.++++|++|++++|.++.++.. +..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555666666665433 45777777777775  455555567777788888877777776543 567777777777777


Q ss_pred             CCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440          119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      .+.. + ..++++++|++|++++|.++.++.. +.++++|+.|++++|.+. .++...+..+++|+.|++++|.+.    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee----
Confidence            7766 3 3456777777777777777766554 567777777777775443 444444666777777777776432    


Q ss_pred             cCCCchhhhhccCCCCCCEEEeecCCC-CCCCC
Q 013440          196 EGGSNASLVELERLTELTTLEIEVPDA-EILPP  227 (443)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~  227 (443)
                                 +.+++|+.|+++.|.+ ..+|.
T Consensus       162 -----------~~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          162 -----------CTCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             -----------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred             -----------cCCCCHHHHHHHHHhCCceeec
Confidence                       2344666666665555 24443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=2.2e-14  Score=127.14  Aligned_cols=149  Identities=21%  Similarity=0.263  Sum_probs=107.9

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW  117 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~  117 (443)
                      .+.++..++.+..+|... .++|+.|++++|.+  ..++...|.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC-CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456777777777777644 37788888888875  44444445778888888888888877664 357788888888888


Q ss_pred             CCCCC-c-ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      |.+.. + ..+..+++|++|++++|.++.+|..+.++++|+.|++++|.+ ..++...+..+++|+.|++.+|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCcc
Confidence            88777 3 446778888888888888888887778888888888887543 4455444667777777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=2e-14  Score=126.66  Aligned_cols=148  Identities=14%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~  118 (443)
                      +.++++++.++.+|... .+.++.|++++|.+ ....+...|.++++|++|++++|.++.++. .+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            36777777776666533 34456777777765 222233445667777777777777766543 5666777777777777


Q ss_pred             CCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          119 ELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       119 ~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      .+..  +..++.+++|++|++++|.++.+ |..+..+++|+.|++++|.+....|. .+..+++|+.|++++|.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSCCE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCcCC
Confidence            7666  24466677777777777766654 44466666666666666544333333 255566666666665544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.58  E-value=4.2e-14  Score=141.28  Aligned_cols=186  Identities=17%  Similarity=0.184  Sum_probs=136.4

Q ss_pred             CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l  115 (443)
                      ..+++.|+++++.+..+|... +++|+.|++++|.+  ..+|    ..+++|++|++++|.++.+|. +..  +|++|++
T Consensus        58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred             cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence            348999999999998888755 48899999999986  4677    357899999999999988887 655  8999999


Q ss_pred             cCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      ++|.+..++.  .+++|++|++++|.++.+|.   .+++|+.|++++|.+. .+|.  +.  ++|+.|++++|.+...+.
T Consensus       128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCCchhh
Confidence            9999888433  68899999999999888876   6788999999986544 4665  33  789999998887763321


Q ss_pred             cCCCchhhhhc-cCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440          196 EGGSNASLVEL-ERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS  271 (443)
Q Consensus       196 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (443)
                            ....+ ...+.|+.|++++|.+..+|..+                        ..+++|+.|++++|.+.+
T Consensus       198 ------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l------------------------~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          198 ------VPVRNHHSEETEIFFRCRENRITHIPENI------------------------LSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ------CC--------CCEEEECCSSCCCCCCGGG------------------------GGSCTTEEEECCSSSCCH
T ss_pred             ------HHHhhhcccccceEEecCCCcceecCHHH------------------------hcCCCCCEEEeeCCcCCC
Confidence                  00001 11223388888888888777643                        335566666666666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.58  E-value=1.1e-14  Score=127.14  Aligned_cols=152  Identities=19%  Similarity=0.226  Sum_probs=129.1

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L  110 (443)
                      ...+++++|+++++.++.++..  ..+++|++|++++|..  ..++...|.++++|++|++++|.++.+|.. +..+++|
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence            4567899999999999887764  3899999999999986  577777778999999999999999987654 6899999


Q ss_pred             cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      ++|++++|.+.. + ..++.+++|++|++++|.++.++.. +.++++|+.|++++|...        +.+++|+.|+++.
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~  174 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWI  174 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHH
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHH
Confidence            999999999988 3 4578999999999999999987765 788999999999997543        4566788888888


Q ss_pred             CCCCcccc
Q 013440          188 GFSGWEKV  195 (443)
Q Consensus       188 ~~~~~~~~  195 (443)
                      |.+....+
T Consensus       175 n~~~g~ip  182 (208)
T 2o6s_A          175 NKHSGVVR  182 (208)
T ss_dssp             HHCTTTBB
T ss_pred             HhCCceee
Confidence            87765554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.57  E-value=1e-15  Score=145.61  Aligned_cols=13  Identities=0%  Similarity=-0.092  Sum_probs=8.5

Q ss_pred             CCCCccEEEEecc
Q 013440          309 GFPRLKRLLVTDC  321 (443)
Q Consensus       309 ~l~~L~~L~l~~~  321 (443)
                      .+++|++|+++++
T Consensus       282 ~l~~L~~LdL~~N  294 (362)
T 3goz_A          282 NIQKIILVDKNGK  294 (362)
T ss_dssp             TCCEEEEECTTSC
T ss_pred             cCCceEEEecCCC
Confidence            5566666777666

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.56  E-value=3.7e-14  Score=124.88  Aligned_cols=147  Identities=20%  Similarity=0.238  Sum_probs=90.7

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~  118 (443)
                      +.++..++.+..+|.... +.++.|++++|.+  ..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            456666666766665432 5677777777764  445544456677777777777777664 556667777777777777


Q ss_pred             CCCC-c-ccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440          119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (443)
                      .+.. + ..+.++++|++|++++|.++.+ |..+..+++|+.|++++|.+ ..++...+..+++|+.|++++|.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCCCCc
Confidence            7666 2 3356667777777777766654 33466666666666666443 333333355556666666655543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.55  E-value=2.3e-14  Score=136.26  Aligned_cols=172  Identities=19%  Similarity=0.177  Sum_probs=122.6

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHh-cCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW  117 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~  117 (443)
                      +.+++.++.++.+|... .+.++.|++++|.+  ..++...|. ++.+|++|++++|.++.++ ..+..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            56788888887777643 34578888888875  555555555 7888888888888888765 4578888888888888


Q ss_pred             CCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHh---hcCCCCcEEEccCCCCC
Q 013440          118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVI---SKLSQLEELYMGNGFSG  191 (443)
Q Consensus       118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~  191 (443)
                      |.+..  +..+..+++|++|++++|.++.+ |..+..+++|+.|++++|. +..+|...+   ..+++|+.|++++|.+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            88777  34577888888888888888755 4567788888888888854 445665444   45778888888887776


Q ss_pred             cccccCCCchhhhhccCCCC--CCEEEeecCCCC
Q 013440          192 WEKVEGGSNASLVELERLTE--LTTLEIEVPDAE  223 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  223 (443)
                      ....        ..+..++.  ++.|++.+|.+.
T Consensus       177 ~l~~--------~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPL--------TDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCH--------HHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCH--------HHhhhccHhhcceEEecCCCcc
Confidence            5443        44555555  367777777663

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.53  E-value=7.3e-14  Score=122.98  Aligned_cols=148  Identities=16%  Similarity=0.143  Sum_probs=111.2

Q ss_pred             cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcC
Q 013440           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA  138 (443)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~  138 (443)
                      +.++.+++..  ..+|..+   ...|++|++++|.++.++. .+..+++|++|++++|.+..  +..+.++++|++|+++
T Consensus        14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            5677777764  6666643   3678888888888887654 67888888888888888877  4778888888888888


Q ss_pred             CCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEe
Q 013440          139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (443)
Q Consensus       139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (443)
                      +|.++.+|.. +..+++|+.|++++|.+....+. .+..+++|+.|++++|.+.....        ..+..+++|++|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAK--------GTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEEC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECH--------HHHhCCCCCCEEEe
Confidence            8888877765 57788888888888655443333 47788888888888887766554        45677788888888


Q ss_pred             ecCCCC
Q 013440          218 EVPDAE  223 (443)
Q Consensus       218 ~~~~~~  223 (443)
                      .+|.+.
T Consensus       160 ~~N~~~  165 (220)
T 2v9t_B          160 AQNPFI  165 (220)
T ss_dssp             CSSCEE
T ss_pred             CCCCcC
Confidence            877763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=8.1e-14  Score=122.68  Aligned_cols=149  Identities=13%  Similarity=0.064  Sum_probs=118.8

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc--ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~  136 (443)
                      -+.++++++..  ..+|..+   ...+++|++++|.++.++  ..+..+++|++|++++|.+..  +..++++++|++|+
T Consensus        13 ~~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           13 GTTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TTEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            35888888885  6677644   456789999999998863  347889999999999999888  35788999999999


Q ss_pred             cCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEE
Q 013440          137 LAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL  215 (443)
Q Consensus       137 l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  215 (443)
                      +++|.++.++.. +..+++|+.|++++|.+....+. .+..+++|+.|++++|.+....+        ..++.+++|++|
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L  158 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAP--------GAFDTLHSLSTL  158 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCT--------TTTTTCTTCCEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECH--------HHhcCCCCCCEE
Confidence            999999877654 78899999999999765554444 37888999999999988876654        667788899999


Q ss_pred             EeecCCCC
Q 013440          216 EIEVPDAE  223 (443)
Q Consensus       216 ~l~~~~~~  223 (443)
                      ++++|.+.
T Consensus       159 ~L~~N~l~  166 (220)
T 2v70_A          159 NLLANPFN  166 (220)
T ss_dssp             ECCSCCEE
T ss_pred             EecCcCCc
Confidence            99888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.51  E-value=2.4e-13  Score=120.43  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=123.1

Q ss_pred             CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEE
Q 013440           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILS  136 (443)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~  136 (443)
                      ..+.++.+++..  ..+|..+   ..+|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus        20 s~~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            466788888774  6777644   48899999999999885 6778899999999999999887 3 5578899999999


Q ss_pred             cCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEE
Q 013440          137 LAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL  215 (443)
Q Consensus       137 l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  215 (443)
                      +++|.++.++.. +..+++|+.|++++|.+ ..+|.. +..+++|+.|++++|.+.....        ..+..+++|+.|
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L  164 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSIPH--------GAFDRLSSLTHA  164 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCCT--------TTTTTCTTCCEE
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCccCH--------HHHhCCCCCCEE
Confidence            999999987765 67899999999999654 477765 6889999999999998876554        557788899999


Q ss_pred             EeecCCCCC
Q 013440          216 EIEVPDAEI  224 (443)
Q Consensus       216 ~l~~~~~~~  224 (443)
                      ++.+|.+..
T Consensus       165 ~l~~N~~~c  173 (229)
T 3e6j_A          165 YLFGNPWDC  173 (229)
T ss_dssp             ECTTSCBCT
T ss_pred             EeeCCCccC
Confidence            999888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=1.1e-13  Score=116.29  Aligned_cols=137  Identities=22%  Similarity=0.177  Sum_probs=75.3

Q ss_pred             CCCCEEEcCCCccc--cccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCC-CchhhcCCCCCCEEecc
Q 013440           85 EGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLS  161 (443)
Q Consensus        85 ~~L~~L~l~~~~~~--~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~  161 (443)
                      ++|++|++++|.++  .+|..+..+++|++|++++|.+..+..+..+++|++|++++|.++. +|..+.++++|+.|+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            55666666666655  4555555566666666666665555555556666666666666554 44445556666666666


Q ss_pred             CCccccccch-HHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440          162 NCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (443)
Q Consensus       162 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (443)
                      +|.+ ..++. ..+..+++|+.|++++|.+.....     .....+..+++|++|++..|....+|.
T Consensus       104 ~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          104 GNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             SSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhccc
Confidence            6433 22221 225556666666666665543321     001245566666666666666655554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.49  E-value=1.3e-13  Score=131.11  Aligned_cols=161  Identities=24%  Similarity=0.303  Sum_probs=133.4

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-  102 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-  102 (443)
                      +...+. .....++.|++++|.+..++...   .+++|+.|++++|.+  ..++...|.++++|++|++++|.++.++. 
T Consensus        30 l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~  106 (361)
T 2xot_A           30 LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEF  106 (361)
T ss_dssp             CSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence            444433 45677999999999998777543   789999999999996  66666667899999999999999998764 


Q ss_pred             cccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhh----cCCCCCCEEeccCCccccccchHHhhc
Q 013440          103 SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEI----GQLTRLQLLDLSNCWWLEVIAPNVISK  176 (443)
Q Consensus       103 ~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~  176 (443)
                      .+..+++|++|++++|.+..  +..+..+++|++|++++|.++.+|..+    ..+++|+.|++++|. +..++...+..
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~  185 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQK  185 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhh
Confidence            58899999999999999988  578899999999999999999998775    579999999999965 45677655788


Q ss_pred             CCC--CcEEEccCCCCC
Q 013440          177 LSQ--LEELYMGNGFSG  191 (443)
Q Consensus       177 l~~--L~~L~l~~~~~~  191 (443)
                      ++.  ++.|++.+|.+.
T Consensus       186 l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          186 LPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCHHHHTTEECCSSCEE
T ss_pred             ccHhhcceEEecCCCcc
Confidence            886  488999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=6.8e-13  Score=132.51  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=133.1

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~  114 (443)
                      ..++++.|++++|.+..+|  ..+++|+.|++++|.+  ..+|. + .+  +|++|++++|.++.+|.   .+++|++|+
T Consensus        78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~  146 (571)
T 3cvr_A           78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYIN  146 (571)
T ss_dssp             CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred             HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEe
Confidence            3578999999999999888  5689999999999986  44776 3 43  99999999999999887   689999999


Q ss_pred             ecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCC-------cEEEccC
Q 013440          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL-------EELYMGN  187 (443)
Q Consensus       115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-------~~L~l~~  187 (443)
                      +++|.+..++.  .+++|++|++++|.++.+|. +.  ++|+.|++++|.+ ..+|.  +..  +|       +.|++++
T Consensus       147 Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L-~~lp~--~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          147 ADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL-ESLPA--VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             CCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC-SSCCC--CC----------CCEEEECCS
T ss_pred             CCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC-Cchhh--HHH--hhhcccccceEEecCC
Confidence            99999988433  67899999999999999988 65  9999999999754 46665  333  66       9999999


Q ss_pred             CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCC
Q 013440          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI  224 (443)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  224 (443)
                      |.+...+         ..+..+++|+.|++++|.+..
T Consensus       217 N~l~~lp---------~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          217 NRITHIP---------ENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SCCCCCC---------GGGGGSCTTEEEECCSSSCCH
T ss_pred             CcceecC---------HHHhcCCCCCEEEeeCCcCCC
Confidence            9887543         556679999999999999843

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=2.4e-13  Score=114.27  Aligned_cols=107  Identities=24%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             hcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCCE
Q 013440           82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQL  157 (443)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~  157 (443)
                      ..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. + ..++++++|++|++++|.++.+|  ..+..+++|+.
T Consensus        46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred             HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence            3444444444444444444 334444445555555444444 2 22233455555555555444443  34445555555


Q ss_pred             EeccCCccccccch---HHhhcCCCCcEEEccCCCC
Q 013440          158 LDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       158 L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~  190 (443)
                      |++++|.+.+ .+.   ..+..+++|+.|+++.|..
T Consensus       125 L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          125 LDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCCh
Confidence            5555543322 222   2244555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=1.3e-15  Score=152.71  Aligned_cols=180  Identities=18%  Similarity=0.177  Sum_probs=112.9

Q ss_pred             CCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCC-------------CCCccCcHHHHhcCCCCCEEE-cCCCccccc
Q 013440           36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEG-------------NGPMQVSDHFFEGMEGLKVLQ-FPGIGSSSL  100 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~l~~L~~L~-l~~~~~~~~  100 (443)
                      .+.+++|+++++.++.+|..+ .+++|+.|++++|.             . .. .++..++.+++|+.|+ ++.+.+..+
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~-~~-~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP-LL-YEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT-GG-GHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccc-cc-CCHHHHHHHHhcccCcchhhcccchh
Confidence            344555555555555555444 55555555554432             1 11 1222234555555555 343332221


Q ss_pred             cc------cccC--CCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchH
Q 013440          101 PS------SLGR--LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN  172 (443)
Q Consensus       101 p~------~l~~--l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~  172 (443)
                      +.      .+..  ...|++|++++|.++.++.++.+++|+.|++++|.++.+|..++++++|+.|++++|.+. .+| .
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~  503 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G  503 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c
Confidence            11      0111  125778888888887744488888888888888888888888888888888888886544 466 3


Q ss_pred             HhhcCCCCcEEEccCCCCCccc-ccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc
Q 013440          173 VISKLSQLEELYMGNGFSGWEK-VEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (443)
Q Consensus       173 ~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (443)
                       ++.+++|+.|++++|.+.... +        ..++.+++|+.|++++|.+..+|..
T Consensus       504 -l~~l~~L~~L~Ls~N~l~~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          504 -VANLPRLQELLLCNNRLQQSAAI--------QPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             -GTTCSSCCEEECCSSCCCSSSTT--------GGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             -cCCCCCCcEEECCCCCCCCCCCc--------HHHhcCCCCCEEEecCCcCCCCccH
Confidence             778888888888888776553 3        6677888888888888887666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=3.5e-13  Score=110.82  Aligned_cols=122  Identities=20%  Similarity=0.198  Sum_probs=72.1

Q ss_pred             CCCCeEEeCCCCCCC--CCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCc
Q 013440           36 QKDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ  111 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~  111 (443)
                      ++++++|+++++.+.  .++... .+++|+.|++++|..  ..+  ..+.++++|++|++++|.++. +|..+..+++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            355777777777665  555543 666667777766664  223  224566666666666666665 555555566666


Q ss_pred             EEEecCCCCCC-c--ccccCCCCCCEEEcCCCCCCCCch----hhcCCCCCCEEecc
Q 013440          112 TLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDLS  161 (443)
Q Consensus       112 ~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l~  161 (443)
                      +|++++|.+.. +  ..++.+++|++|++++|.++.+|.    .+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666666655 2  555556666666666665554443    34555555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=4.6e-13  Score=113.47  Aligned_cols=102  Identities=19%  Similarity=0.115  Sum_probs=48.0

Q ss_pred             CCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-ccc-ccCCCCCCEEEcCCCCCCCCch--hhcCCCCCCEEecc
Q 013440           86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAA-IGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLS  161 (443)
Q Consensus        86 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~  161 (443)
                      +|++|++++|.++.+ +.+..+++|++|++++|.+.. +.. ++.+++|++|++++|.++.+|.  .+.++++|+.|+++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            444444444444444 334444555555555554444 222 2445555555555555544444  44455555555555


Q ss_pred             CCccccccchH---HhhcCCCCcEEEccCCC
Q 013440          162 NCWWLEVIAPN---VISKLSQLEELYMGNGF  189 (443)
Q Consensus       162 ~~~~~~~~~~~---~l~~l~~L~~L~l~~~~  189 (443)
                      +|.+. .++..   ++..+++|+.|+++.|.
T Consensus       122 ~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          122 RNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             SSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            54332 23321   24455555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=6.3e-13  Score=109.31  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             CCCcEEEcccCCCCC-ccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC--cccccCCCCCCEE
Q 013440           59 PNLQLFLLYTEGNGP-MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEIL  135 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L  135 (443)
                      ++|+.|++++|.. . ..++.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+..  +..++.+++|++|
T Consensus        17 ~~l~~L~l~~n~l-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRS-NEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBC-BTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcC-ChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4455555555543 2 233332 24455555555555555444 344445555555555555444  2233334555555


Q ss_pred             EcCCCCCCCCc--hhhcCCCCCCEEeccCC
Q 013440          136 SLAYSNINQLP--VEIGQLTRLQLLDLSNC  163 (443)
Q Consensus       136 ~l~~~~~~~lp--~~~~~l~~L~~L~l~~~  163 (443)
                      ++++|.++.++  ..+.++++|+.|++++|
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            55555444432  34444555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=3.3e-12  Score=109.82  Aligned_cols=128  Identities=18%  Similarity=0.217  Sum_probs=102.6

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcH-HHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW  117 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~  117 (443)
                      +.++++++.++.+|... .+.++.|++++|.+  ..++. .+|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67888888888888754 23889999999985  44443 3468899999999999998875 67788899999999999


Q ss_pred             CCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccc
Q 013440          118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIA  170 (443)
Q Consensus       118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~  170 (443)
                      |.+..  +..++++++|++|++++|.++.+ |..+..+++|+.|++++|.+....+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99887  35578889999999999988854 6668888999999998887666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=1.7e-12  Score=110.02  Aligned_cols=130  Identities=15%  Similarity=0.110  Sum_probs=102.7

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcCCCC-CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc-cCCCC
Q 013440           32 EETIQKDPIAISLPHRDIQELPERLQCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLIN  109 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l-~~l~~  109 (443)
                      +...+.+++.|++.+|.+..++....+. +|+.|++++|..  ..++  .+.++++|++|++++|.++.+|+.+ ..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc--ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4456778889999998888777655544 899999998886  3442  2578889999999999888877554 78889


Q ss_pred             CcEEEecCCCCCC-cc--cccCCCCCCEEEcCCCCCCCCchh----hcCCCCCCEEeccCCcc
Q 013440          110 LQTLCLDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNCWW  165 (443)
Q Consensus       110 L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~~  165 (443)
                      |++|++++|.+.. +.  .++.+++|++|++++|.++.+|..    +..+++|+.|++++|..
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999999988877 33  678888999999999988877764    78888999998888654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=1.7e-12  Score=134.30  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=88.9

Q ss_pred             CCCeEEeCCCCCCCCCCCcC-CCCCCcEEEccc-----CCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440           37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYT-----EGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL  110 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L  110 (443)
                      +.+++|.+.++.+...+... ....|+.+.+..     |..   .++...+..+..|++|++++|.+..+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM---VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL  249 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce---ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence            45777888777775544322 333333333322     221   234445677888888888888888888777788888


Q ss_pred             cEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          111 QTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       111 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      ++|++++|.+.. +..++++++|++|+|++|.++.+|..++++++|+.|++++|.+ +.+|.. ++.+++|+.|++++|.
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~-~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWE-FGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSS-TTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChh-hhcCCCccEEeCCCCc
Confidence            888888888877 6777888888888888888888888888888888888888644 577765 7788888888888887


Q ss_pred             CCcccc
Q 013440          190 SGWEKV  195 (443)
Q Consensus       190 ~~~~~~  195 (443)
                      +....+
T Consensus       328 l~~~~p  333 (727)
T 4b8c_D          328 LEKQFL  333 (727)
T ss_dssp             CCSHHH
T ss_pred             cCCCCh
Confidence            765443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=4.9e-13  Score=138.25  Aligned_cols=131  Identities=21%  Similarity=0.221  Sum_probs=111.0

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL  135 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L  135 (443)
                      .++.|+.|++++|.+  ..++..++ ++++|++|+|++|.++.+|..++.+++|++|++++|.+.. |..++++.+|++|
T Consensus       222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            789999999999996  57888775 8999999999999999999999999999999999999988 7889999999999


Q ss_pred             EcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCC-CCcEEEccCCCCC
Q 013440          136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG  191 (443)
Q Consensus       136 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  191 (443)
                      +|++|.++.+|..++++++|+.|++++|.+.+..|.. +..+. .+..+++.+|.+.
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence            9999999999999999999999999998877666654 33321 1223455555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=1.1e-11  Score=104.98  Aligned_cols=129  Identities=19%  Similarity=0.255  Sum_probs=99.5

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDW  117 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~  117 (443)
                      .+.+++.++++..+|... .++|+.|++++|..  ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            356778888887777433 47888999998885  566666667888999999999888886644 57888888999888


Q ss_pred             CCCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccc
Q 013440          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIA  170 (443)
Q Consensus       118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~  170 (443)
                      |.+.. + ..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+....+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88877 3 4467888888888888888877765 4678888888888877655544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.34  E-value=6.4e-12  Score=107.97  Aligned_cols=122  Identities=18%  Similarity=0.168  Sum_probs=57.2

Q ss_pred             cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc--ccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEc
Q 013440           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS--LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL  137 (443)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~--l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l  137 (443)
                      ++++++++..  ..+|..+   ...|++|++++|.++.++..  ++.+++|++|++++|.+..  +..++++++|++|++
T Consensus        11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            4555555543  4444432   12555555555555554432  4555555555555555544  244455555555555


Q ss_pred             CCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      ++|.++.++.. +.++++|+.|++++|.+.+..|.. +..+++|++|++++|.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence            55555533322 444555555555554333322322 3444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=8.5e-12  Score=107.24  Aligned_cols=124  Identities=19%  Similarity=0.263  Sum_probs=86.6

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~  118 (443)
                      +.++++++.+..+|... .++|+.|++++|.+  ..+|.. |.++.+|++|++++|.++.++ ..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46777777777776543 35777788877775  456643 477777888888877777754 45777777777777777


Q ss_pred             CCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCcccc
Q 013440          119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE  167 (443)
Q Consensus       119 ~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~  167 (443)
                      .+..  +..++.+++|++|++++|.++.+|.. +..+++|+.|++.+|+...
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7766  34577777777777777777766654 6667777777777765443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=2.2e-11  Score=104.60  Aligned_cols=126  Identities=18%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcC
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA  138 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~  138 (443)
                      -+.++++++..  ..+|..+   ...|++|++++|.++.+|..+..+++|++|++++|.+..  +..+.++++|++|+++
T Consensus        12 ~~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            36788888885  6777654   468999999999999999999999999999999999988  4678999999999999


Q ss_pred             CCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          139 YSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       139 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      +|.++.++. .+..+++|+.|++++|.+ ..++...+..+++|+.|++++|.+.-
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCeec
Confidence            999997765 589999999999999654 56666558889999999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=2e-11  Score=122.36  Aligned_cols=176  Identities=18%  Similarity=0.116  Sum_probs=125.0

Q ss_pred             hhccCCCCeEEeCCCCC-------------C-CCCCCcC-CCCCCcEEE-cccCCCCCccCcHHH-----Hh--cCCCCC
Q 013440           32 EETIQKDPIAISLPHRD-------------I-QELPERL-QCPNLQLFL-LYTEGNGPMQVSDHF-----FE--GMEGLK   88 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~-------------~-~~l~~~~-~~~~L~~L~-l~~~~~~~~~~~~~~-----~~--~l~~L~   88 (443)
                      +++.+++|+.|++.++.             . ...|... .+++|+.|+ ++.+..  ..++.-.     +.  ....|+
T Consensus       367 ~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--~~L~~l~l~~n~i~~l~~~~L~  444 (567)
T 1dce_A          367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--DDLRSKFLLENSVLKMEYADVR  444 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--chhhhhhhhcccccccCccCce
Confidence            45666677777775543             1 1222222 566777777 444321  1111100     01  123689


Q ss_pred             EEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCcccc
Q 013440           89 VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE  167 (443)
Q Consensus        89 ~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~  167 (443)
                      +|++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|+.|++++|.++.+| .++++++|+.|++++|.+.+
T Consensus       445 ~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          445 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             EEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCC
Confidence            99999999999887 8999999999999999888 788999999999999999999888 89999999999999976655


Q ss_pred             cc-chHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEe
Q 013440          168 VI-APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (443)
Q Consensus       168 ~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (443)
                      .. |.. ++.+++|+.|++++|.+...++     .....+..+++|+.|++
T Consensus       523 ~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          523 SAAIQP-LVSCPRLVLLNLQGNSLCQEEG-----IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSTTGG-GGGCTTCCEEECTTSGGGGSSS-----CTTHHHHHCTTCSEEEC
T ss_pred             CCCcHH-HhcCCCCCEEEecCCcCCCCcc-----HHHHHHHHCcccCccCC
Confidence            44 654 7899999999999998866543     11123455788888753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=1.4e-13  Score=119.01  Aligned_cols=104  Identities=19%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~  136 (443)
                      .+++|+.|++++|..  ..++ . +.++++|++|++++|.++.+|..+..+++|++|++++|.+..++.++.+++|++|+
T Consensus        46 ~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~  121 (198)
T 1ds9_A           46 TLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred             cCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence            445555555555543  2233 1 34455555555555555544444444455555555555544433444445555555


Q ss_pred             cCCCCCCCCch--hhcCCCCCCEEeccCCc
Q 013440          137 LAYSNINQLPV--EIGQLTRLQLLDLSNCW  164 (443)
Q Consensus       137 l~~~~~~~lp~--~~~~l~~L~~L~l~~~~  164 (443)
                      +++|.++.++.  .+..+++|+.|++++|.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            55554444332  34445555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.22  E-value=1.2e-10  Score=98.60  Aligned_cols=125  Identities=20%  Similarity=0.279  Sum_probs=72.3

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEc
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL  137 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l  137 (443)
                      .+.++++++..  ..+|..+   ...|++|++++|.++.++. .+..+++|++|++++|.+.. + ..++.+++|++|++
T Consensus         9 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            35566666653  4455432   3566777777776666543 34566666666666666665 2 33556666666666


Q ss_pred             CCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      ++|.++.+|.. +.++++|+.|++++|.+ ..++...+..+++|++|++++|.+.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCee
Confidence            66666655543 45666666666666433 3444433455556666666555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=2.1e-13  Score=118.01  Aligned_cols=156  Identities=20%  Similarity=0.174  Sum_probs=116.3

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCC
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAY  139 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~  139 (443)
                      ++...+.+..-....++.. +.++++|++|++++|.++.+| .+..+++|++|++++|.+.. +..+..+++|++|++++
T Consensus        25 l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            3444444432113455554 589999999999999999988 88999999999999999888 56667789999999999


Q ss_pred             CCCCCCchhhcCCCCCCEEeccCCccccccch-HHhhcCCCCcEEEccCCCCCcccccCC--CchhhhhccCCCCCCEEE
Q 013440          140 SNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGG--SNASLVELERLTELTTLE  216 (443)
Q Consensus       140 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~  216 (443)
                      |.++.+| .+..+++|+.|++++|.+. .++. ..+..+++|++|++++|.+....+...  .......+..+++|+.|+
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999887 6889999999999996544 3332 347899999999999998754432100  001113478899999886


Q ss_pred             eecCCC
Q 013440          217 IEVPDA  222 (443)
Q Consensus       217 l~~~~~  222 (443)
                        ++.+
T Consensus       181 --~~~i  184 (198)
T 1ds9_A          181 --GMPV  184 (198)
T ss_dssp             --CGGG
T ss_pred             --Cccc
Confidence              4444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.20  E-value=5.4e-11  Score=111.39  Aligned_cols=285  Identities=11%  Similarity=0.014  Sum_probs=151.7

Q ss_pred             CCCCCEEEcCCCccccccccccC-CCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCch-hhcC--------C
Q 013440           84 MEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQ--------L  152 (443)
Q Consensus        84 l~~L~~L~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~--------l  152 (443)
                      +.+++.|.++++--..-...+.. +++|++|+++++.+.. ....+.++.+..+.+..+   .+|. .+.+        +
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence            56678888876521111122233 7788888888888774 111122222344444444   2333 2455        7


Q ss_pred             CCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecC----CCCCCCCc
Q 013440          153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP----DAEILPPD  228 (443)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~----~~~~~~~~  228 (443)
                      ++|+.+.+..  .+..++...|..|++|+.+.+..+.+.....        ..+.++.++..+.....    ....+...
T Consensus       101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~--------~aF~~~~~l~~l~~~~~~~~~~~~~i~~~  170 (329)
T 3sb4_A          101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP--------EALADSVTAIFIPLGSSDAYRFKNRWEHF  170 (329)
T ss_dssp             TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECT--------TSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred             CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccch--------hhhcCCCceEEecCcchhhhhcccccccc
Confidence            8888888876  3455665567788888888888776654443        34445555554443321    11122222


Q ss_pred             c--ccccCc-EEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc
Q 013440          229 F--VSVELQ-RYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD  305 (443)
Q Consensus       229 ~--~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  305 (443)
                      .  .+..|+ .+.+.............--...++..+.+.++-....   ...+...+++|+.+++.++.........|.
T Consensus       171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~---~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~  247 (329)
T 3sb4_A          171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD---FKLIRDYMPNLVSLDISKTNATTIPDFTFA  247 (329)
T ss_dssp             CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHH---HHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred             ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHH---HHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence            1  234444 2222100000000000001244555555555311111   111223347888998887654333333344


Q ss_pred             cCCCCCCccEEEEecccCceeecccccccccCccCccc-ceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440          306 DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE-ALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL  384 (443)
Q Consensus       306 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~  384 (443)
                         .|++|+++++.++  ++.++.    .....+++|+ .+.+.+  .++.++...|   ..+++|+++++.+ ..++.+
T Consensus       248 ---~~~~L~~l~l~~n--i~~I~~----~aF~~~~~L~~~l~l~~--~l~~I~~~aF---~~c~~L~~l~l~~-n~i~~I  312 (329)
T 3sb4_A          248 ---QKKYLLKIKLPHN--LKTIGQ----RVFSNCGRLAGTLELPA--SVTAIEFGAF---MGCDNLRYVLATG-DKITTL  312 (329)
T ss_dssp             ---TCTTCCEEECCTT--CCEECT----TTTTTCTTCCEEEEECT--TCCEECTTTT---TTCTTEEEEEECS-SCCCEE
T ss_pred             ---CCCCCCEEECCcc--cceehH----HHhhCChhccEEEEEcc--cceEEchhhh---hCCccCCEEEeCC-CccCcc
Confidence               7888999988875  666642    1345667787 888876  6777765433   3577888888755 577777


Q ss_pred             cChhhhhcccccceee
Q 013440          385 FSFSMAKNLLRLQKVK  400 (443)
Q Consensus       385 ~~~~~~~~~~~L~~L~  400 (443)
                      +..+ ..++++|+.|+
T Consensus       313 ~~~a-F~~~~~L~~ly  327 (329)
T 3sb4_A          313 GDEL-FGNGVPSKLIY  327 (329)
T ss_dssp             CTTT-TCTTCCCCEEE
T ss_pred             chhh-hcCCcchhhhc
Confidence            6543 45677777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.20  E-value=2e-11  Score=114.28  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             CCCCeEEeCCCCCCC--------------------CCCCcC--C--------CCCCcEEEcccCCCCCccCcHHHHhcCC
Q 013440           36 QKDPIAISLPHRDIQ--------------------ELPERL--Q--------CPNLQLFLLYTEGNGPMQVSDHFFEGME   85 (443)
Q Consensus        36 ~~~l~~L~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~l~   85 (443)
                      +++++.|+++++.+.                    .++...  +        |++|+.|++.+ .  ...++...|.+|.
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~--i~~I~~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K--IKNIEDAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T--CCEECTTTTTTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c--ccchhHHHhhcCc
Confidence            788999999988876                    222222  4        67777777766 3  3556666667777


Q ss_pred             CCCEEEcCCCcccccc-ccccCCCCCcEEEe
Q 013440           86 GLKVLQFPGIGSSSLP-SSLGRLINLQTLCL  115 (443)
Q Consensus        86 ~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l  115 (443)
                      +|+.++++.+.+..++ ..|.++.++.++..
T Consensus       125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLPEALADSVTAIFIPL  155 (329)
T ss_dssp             TCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred             ccceEEcCCCCccccchhhhcCCCceEEecC
Confidence            7777777777665533 33455555554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=1e-09  Score=92.49  Aligned_cols=98  Identities=20%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcC
Q 013440           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA  138 (443)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~  138 (443)
                      +.++++++..  ..+|..+   ...|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..++++++|++|+++
T Consensus        15 ~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            4556665553  4455433   25566666666666554 3445556666666666666555 2 224556666666666


Q ss_pred             CCCCCCCchh-hcCCCCCCEEeccCCc
Q 013440          139 YSNINQLPVE-IGQLTRLQLLDLSNCW  164 (443)
Q Consensus       139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~  164 (443)
                      +|.++.+|.. +.++++|+.|++++|.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCC
Confidence            6666555543 5555666666665544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.05  E-value=1e-09  Score=92.08  Aligned_cols=101  Identities=23%  Similarity=0.202  Sum_probs=63.3

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEc
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL  137 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l  137 (443)
                      .+.++++++..  ..+|..+   ...|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..+..+++|++|++
T Consensus        11 ~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            45666666664  4555533   36667777777776665 4456666777777777776666 2 33566667777777


Q ss_pred             CCCCCCCCchh-hcCCCCCCEEeccCCccc
Q 013440          138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWL  166 (443)
Q Consensus       138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~  166 (443)
                      ++|.++.+|.. +.++++|+.|++++|.+.
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            77766666553 566666666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=1.4e-09  Score=91.56  Aligned_cols=106  Identities=17%  Similarity=0.212  Sum_probs=91.1

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDW  117 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~  117 (443)
                      .+.++++++.+..+|.... ++|+.|++++|.+  ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3689999999998887554 8999999999996  566555578999999999999999998865 58999999999999


Q ss_pred             CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch
Q 013440          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV  147 (443)
Q Consensus       118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~  147 (443)
                      |.+.. + ..++.+++|++|++++|.+...+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99988 4 458899999999999998875544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.03  E-value=1.3e-09  Score=91.47  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=89.6

Q ss_pred             CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecC
Q 013440           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDW  117 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~  117 (443)
                      .+.++++++.++.+|... .+.|+.|++++|.+  ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            468999999999888755 48999999999996  666555578999999999999999998765 68999999999999


Q ss_pred             CCCCC-c-ccccCCCCCCEEEcCCCCCCCC
Q 013440          118 CELAD-I-AAIGQLKKLEILSLAYSNINQL  145 (443)
Q Consensus       118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~l  145 (443)
                      |.+.. + ..+..+++|++|++++|.+...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99988 4 4688999999999999988733

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.99  E-value=2.1e-10  Score=108.93  Aligned_cols=161  Identities=14%  Similarity=0.076  Sum_probs=87.2

Q ss_pred             CCCcEEEcccCCCCCccCcHHH---Hh-cCCCCCEEEcCCCcccc--ccccccCCCCCcEEEecCCCCCC--cccc----
Q 013440           59 PNLQLFLLYTEGNGPMQVSDHF---FE-GMEGLKVLQFPGIGSSS--LPSSLGRLINLQTLCLDWCELAD--IAAI----  126 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~---~~-~l~~L~~L~l~~~~~~~--~p~~l~~l~~L~~L~l~~~~l~~--~~~~----  126 (443)
                      +.|+.|++++|.+ .......+   +. ....|++|++++|.++.  +..-...+.+|++|++++|.+.+  ...+    
T Consensus        72 ~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4566666666664 22111111   11 22567777777776643  22222334566777777776655  2222    


Q ss_pred             -cCCCCCCEEEcCCCCCC-----CCchhhcCCCCCCEEeccCCccccccc---hHHhhcCCCCcEEEccCCCCCcccccC
Q 013440          127 -GQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIA---PNVISKLSQLEELYMGNGFSGWEKVEG  197 (443)
Q Consensus       127 -~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~  197 (443)
                       ...++|++|++++|.++     .++..+..+++|++|++++|.+.+...   ...+...++|++|++++|.+.....  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~--  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA--  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence             23566777777777665     234445666777777777765433211   1124556677777777776654322  


Q ss_pred             CCchhhhhccCCCCCCEEEeecCCCCC
Q 013440          198 GSNASLVELERLTELTTLEIEVPDAEI  224 (443)
Q Consensus       198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~  224 (443)
                        ......+...++|++|++++|.+..
T Consensus       229 --~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          229 --LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             --HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             --HHHHHHHHhCCCCCEEeccCCCCCH
Confidence              1222344556677777777776643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.99  E-value=1.4e-10  Score=110.16  Aligned_cols=161  Identities=14%  Similarity=0.022  Sum_probs=120.2

Q ss_pred             ccCCCCeEEeCCCCCCCCCC-----CcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-----cc
Q 013440           34 TIQKDPIAISLPHRDIQELP-----ERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-----LP  101 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~p  101 (443)
                      ...+.++.|++++|.+....     ...  ..++|+.|++++|.. .......++..+.+|++|++++|.++.     +.
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            45578999999999985422     111  347999999999986 444344455567899999999999864     22


Q ss_pred             ccc-cCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC-----CCchhhcCCCCCCEEeccCCcccccc
Q 013440          102 SSL-GRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVI  169 (443)
Q Consensus       102 ~~l-~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~  169 (443)
                      ..+ ...++|++|++++|.+.+  .    ..+..+++|++|++++|.++     .++..+...++|+.|++++|.+.+..
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence            333 357899999999999866  2    44578899999999999987     24566778899999999998765432


Q ss_pred             ch---HHhhcCCCCcEEEccCCCCCcccc
Q 013440          170 AP---NVISKLSQLEELYMGNGFSGWEKV  195 (443)
Q Consensus       170 ~~---~~l~~l~~L~~L~l~~~~~~~~~~  195 (443)
                      ..   ..+...++|++|++++|.+.....
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence            22   125567899999999998865543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.90  E-value=5.2e-08  Score=93.39  Aligned_cols=302  Identities=12%  Similarity=0.111  Sum_probs=152.0

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~  133 (443)
                      +|.+|+.+.+..+   ...+....|.+|.+|+.+++..+ ++.++ ..+.+|.+|+.+.+..+ +..  ...+.++..+.
T Consensus        69 ~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           69 GCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred             CCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence            6777888887643   35566666778888888887654 44443 34566777766555432 111  23344443222


Q ss_pred             EEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCC
Q 013440          134 ILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL  212 (443)
Q Consensus       134 ~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  212 (443)
                      ......  +..+ ...+.++++|+.+.+..+  ...+....+..+.+|+.+.+..+ +.....        ..+.++..|
T Consensus       144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~--------~~F~~~~~L  210 (394)
T 4fs7_A          144 ITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRD--------YCFAECILL  210 (394)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECT--------TTTTTCTTC
T ss_pred             cccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCc--------hhhcccccc
Confidence            221111  1211 224666777777777552  23344444666777777766543 111111        334555666


Q ss_pred             CEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeecc
Q 013440          213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE  292 (443)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~  292 (443)
                      +.+.+..+....-.....+..|+.+.+...  ........+..+..++.+.+..+..  .+. ...+. .+..++.+...
T Consensus       211 ~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~--~i~-~~~F~-~~~~l~~~~~~  284 (394)
T 4fs7_A          211 ENMEFPNSLYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL--RIG-GSLFY-NCSGLKKVIYG  284 (394)
T ss_dssp             CBCCCCTTCCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC--EEC-SCTTT-TCTTCCEEEEC
T ss_pred             ceeecCCCceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcc--eee-ccccc-cccccceeccC
Confidence            655554333211111113356666655211  0111112235666777776665322  111 11122 22455555443


Q ss_pred             ccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccce
Q 013440          293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI  372 (443)
Q Consensus       293 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~  372 (443)
                      ....   ....+   ..+.+|+.+.+.+  +++.+.+.    ....+.+|+.+.+..  .++.++...+   ..+.+|++
T Consensus       285 ~~~i---~~~~F---~~~~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF---~~c~~L~~  347 (394)
T 4fs7_A          285 SVIV---PEKTF---YGCSSLTEVKLLD--SVKFIGEE----AFESCTSLVSIDLPY--LVEEIGKRSF---RGCTSLSN  347 (394)
T ss_dssp             SSEE---CTTTT---TTCTTCCEEEECT--TCCEECTT----TTTTCTTCCEECCCT--TCCEECTTTT---TTCTTCCE
T ss_pred             ceee---ccccc---ccccccccccccc--ccceechh----hhcCCCCCCEEEeCC--cccEEhHHhc---cCCCCCCE
Confidence            3211   11112   2677888887754  35555311    234456777777753  4666654433   23567777


Q ss_pred             eeeccCcCcccccChhhhhcccccceeeec
Q 013440          373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVE  402 (443)
Q Consensus       373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~  402 (443)
                      +.+..  .++.++..+ ..+|.+|+.+.+.
T Consensus       348 i~lp~--~l~~I~~~a-F~~C~~L~~i~lp  374 (394)
T 4fs7_A          348 INFPL--SLRKIGANA-FQGCINLKKVELP  374 (394)
T ss_dssp             ECCCT--TCCEECTTT-BTTCTTCCEEEEE
T ss_pred             EEECc--cccEehHHH-hhCCCCCCEEEEC
Confidence            77743  366666543 3667777777663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.88  E-value=3.2e-08  Score=94.75  Aligned_cols=255  Identities=14%  Similarity=0.148  Sum_probs=155.0

Q ss_pred             CCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEE
Q 013440           37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLC  114 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~  114 (443)
                      ..++.+.+.+ .++.++... .-.+|+.+.+..+   ...+....|.++ .|+.+.+.. .++.++ ..|.+|.+|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT---CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC---ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            5566666654 233333222 1236888887765   355666666664 688888875 555544 4577888888888


Q ss_pred             ecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          115 LDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       115 l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      +..+.+.. + ..+. +.+|+.+.+..+ ++.++. .+.++++|+.+.+..+  ...+....|.. .+|+.+.+..+ +.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~  260 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT  260 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc
Confidence            88877766 3 3444 578888888744 555544 4677888888888762  34555544655 67888887432 22


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCC-----CCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEE
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAE-----ILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMML  264 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  264 (443)
                      ....        ..+.++++|+.+.+..+...     .++...  .|++|+.+.+. .. ........+..|.+|+.+.+
T Consensus       261 ~I~~--------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~-i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          261 NIAS--------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES-IRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EECT--------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCCSCCEEEE
T ss_pred             EECh--------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc-eEEEhhhhhcCCCCccEEEE
Confidence            2222        55778888888888776554     344443  45778877763 11 11111233567888888888


Q ss_pred             cCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCC-CccEEEEecc
Q 013440          265 KGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFP-RLKRLLVTDC  321 (443)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~  321 (443)
                      ..+ + ..+. ..++..+  +|+.+.+.++.........+.   .++ +++.|.+-..
T Consensus       331 p~~-l-~~I~-~~aF~~~--~L~~l~l~~n~~~~l~~~~F~---~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          331 PAN-V-TQIN-FSAFNNT--GIKEVKVEGTTPPQVFEKVWY---GFPDDITVIRVPAE  380 (401)
T ss_dssp             CTT-C-CEEC-TTSSSSS--CCCEEEECCSSCCBCCCSSCC---CSCTTCCEEEECGG
T ss_pred             Ccc-c-cEEc-HHhCCCC--CCCEEEEcCCCCccccccccc---CCCCCccEEEeCHH
Confidence            654 2 2222 2234333  799999988755443333333   453 6788888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.78  E-value=3.9e-07  Score=87.29  Aligned_cols=300  Identities=14%  Similarity=0.107  Sum_probs=177.5

Q ss_pred             ccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCC
Q 013440           34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINL  110 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L  110 (443)
                      ..+.+|+.+.+.. .++.+....  +|.+|+.+++..+   ...+....|.++..|+.+.+..+ +..+ ...|.++..+
T Consensus        68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS---VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC---ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            4567888888874 365555433  8999999999765   35667777889999998877654 3332 2345555444


Q ss_pred             cEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       111 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      ...............+.++.+|+.+.+..+ +..++. .+.++.+|+.+.+..+  ...+....+..+..|+.+.+..+.
T Consensus       143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence            333322222111366788999999998765 333433 4778889999888763  444555557788888887765432


Q ss_pred             CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (443)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (443)
                      ..-  .        .......+|+.+.+... ...+....  .+..|+.+.+.....  ......+..+..++.+.....
T Consensus       220 ~~i--~--------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          220 YYL--G--------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             CEE--C--------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSS
T ss_pred             eEe--e--------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCce
Confidence            211  0        12233457777777533 23333332  457777777632211  011123356777777766653


Q ss_pred             cccccccccchhhHhhcccceeeccccCCcccccc-ccccCCCCCCccEEEEecccCceeecccccccccCccCccccee
Q 013440          268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVH-ELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS  346 (443)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  346 (443)
                      ..    + ...+. .+.+|+.+.+...  +..+.. .+.   .|.+|+.+.|.+  +++.+...    .-..+.+|+.+.
T Consensus       287 ~i----~-~~~F~-~~~~L~~i~l~~~--i~~I~~~aF~---~c~~L~~i~lp~--~v~~I~~~----aF~~c~~L~~i~  349 (394)
T 4fs7_A          287 IV----P-EKTFY-GCSSLTEVKLLDS--VKFIGEEAFE---SCTSLVSIDLPY--LVEEIGKR----SFRGCTSLSNIN  349 (394)
T ss_dssp             EE----C-TTTTT-TCTTCCEEEECTT--CCEECTTTTT---TCTTCCEECCCT--TCCEECTT----TTTTCTTCCEEC
T ss_pred             ee----c-ccccc-ccccccccccccc--cceechhhhc---CCCCCCEEEeCC--cccEEhHH----hccCCCCCCEEE
Confidence            21    1 11222 2378888887542  333322 233   788999999864  36666311    334567888888


Q ss_pred             ccccccccccccccccccccccccceeeec
Q 013440          347 LMFLTNLETICYSQLREDQSFSNLRIINVD  376 (443)
Q Consensus       347 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~  376 (443)
                      +..  .++.++...+   ..+++|+++++.
T Consensus       350 lp~--~l~~I~~~aF---~~C~~L~~i~lp  374 (394)
T 4fs7_A          350 FPL--SLRKIGANAF---QGCINLKKVELP  374 (394)
T ss_dssp             CCT--TCCEECTTTB---TTCTTCCEEEEE
T ss_pred             ECc--cccEehHHHh---hCCCCCCEEEEC
Confidence            864  4666765433   246778888774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=1.6e-07  Score=89.87  Aligned_cols=212  Identities=12%  Similarity=0.110  Sum_probs=141.5

Q ss_pred             CCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEE
Q 013440           38 DPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLC  114 (443)
Q Consensus        38 ~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~  114 (443)
                      +++.+.+.. .++.+....  +|++|+.+++.+|..  ..++...|. +..|+.+.+..+ ++.++ ..|.+|.+|+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence            577788775 555555333  889999999998874  677777776 689999999854 66654 5578899999999


Q ss_pred             ecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccc----cccchHHhhcCCCCcEEEccC
Q 013440          115 LDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWL----EVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       115 l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      +..+ +..  ...+.+ .+|+.+.+. +.++.++. .+.++++|+.+.+.++...    ..++...|..|++|+.+.+..
T Consensus       233 l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          233 IPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             cCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            8764 333  355555 678888884 34665543 5788899999988774322    245655688888999988874


Q ss_pred             CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhccc-ccceeEEE
Q 013440          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLMML  264 (443)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l  264 (443)
                      + +.....        ..+.++++|+.+.+..+ +..+....  .+ +|+.+.+.....+.... ..+..+ ..++.+.+
T Consensus       310 ~-i~~I~~--------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~-~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          310 S-IRILGQ--------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE-KVWYGFPDDITVIRV  377 (401)
T ss_dssp             T-CCEECT--------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC-SSCCCSCTTCCEEEE
T ss_pred             c-eEEEhh--------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc-ccccCCCCCccEEEe
Confidence            3 333332        56778888999988544 55555444  45 88888885443333211 122333 46777777


Q ss_pred             cCccc
Q 013440          265 KGIKK  269 (443)
Q Consensus       265 ~~~~~  269 (443)
                      ..+..
T Consensus       378 p~~~~  382 (401)
T 4fdw_A          378 PAESV  382 (401)
T ss_dssp             CGGGH
T ss_pred             CHHHH
Confidence            76443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.76  E-value=2.6e-09  Score=88.71  Aligned_cols=92  Identities=16%  Similarity=0.183  Sum_probs=53.3

Q ss_pred             CccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccc-ccccccceeeeccCcCcccccChhhh
Q 013440          312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRED-QSFSNLRIINVDSCRKLKYLFSFSMA  390 (443)
Q Consensus       312 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~  390 (443)
                      .|++|++++|. +++.   + ...+..+++|+.|++++|..+++.....+.+. ...++|++|++++|+++++.+... +
T Consensus        62 ~L~~LDLs~~~-Itd~---G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L  135 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSI---G-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-L  135 (176)
T ss_dssp             CEEEEEEESCC-CCGG---G-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-G
T ss_pred             eEeEEeCcCCC-ccHH---H-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-H
Confidence            46666666664 3321   1 22345666666777766666666544333211 113467777777777777765433 3


Q ss_pred             hcccccceeeeccCccccc
Q 013440          391 KNLLRLQKVKVEDCDDLKM  409 (443)
Q Consensus       391 ~~~~~L~~L~i~~C~~l~~  409 (443)
                      ..+++|++|+|++|+.+++
T Consensus       136 ~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCEEECCCCCCCCc
Confidence            4567777777777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=2.2e-08  Score=94.22  Aligned_cols=185  Identities=16%  Similarity=0.138  Sum_probs=95.7

Q ss_pred             hhccCCCCeEEeCCCCCCCC--C-------CCcC-CCCCCcEEEcccCCCC---C----ccCcHHHHhcCCCCCEEEcCC
Q 013440           32 EETIQKDPIAISLPHRDIQE--L-------PERL-QCPNLQLFLLYTEGNG---P----MQVSDHFFEGMEGLKVLQFPG   94 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~--l-------~~~~-~~~~L~~L~l~~~~~~---~----~~~~~~~~~~l~~L~~L~l~~   94 (443)
                      .......++.|.+.....+.  .       .... .+++|+.|.+......   .    ..-...++..+++|+.|++++
T Consensus       102 ~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g  181 (362)
T 2ra8_A          102 KDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG  181 (362)
T ss_dssp             HCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred             cCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence            34444556667666544321  0       1111 4677777777543210   0    011234456677777777777


Q ss_pred             CccccccccccCCCCCcEEEecCCCCCC--ccccc--CCCCCCEEEcCCC--C------CCCCchhh--cCCCCCCEEec
Q 013440           95 IGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIG--QLKKLEILSLAYS--N------INQLPVEI--GQLTRLQLLDL  160 (443)
Q Consensus        95 ~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~--~l~~L~~L~l~~~--~------~~~lp~~~--~~l~~L~~L~l  160 (443)
                      +....++. + .+++|++|++..|.+..  +..+.  .+++|+.|+|+.+  .      +..+...+  ..+++|+.|++
T Consensus       182 ~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L  259 (362)
T 2ra8_A          182 TNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI  259 (362)
T ss_dssp             CBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred             CCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence            63223333 3 26777777777776654  33332  5777777776421  1      11222222  24677777777


Q ss_pred             cCCccccccchHHh--hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC
Q 013440          161 SNCWWLEVIAPNVI--SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (443)
Q Consensus       161 ~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (443)
                      .+|.+.+..+..++  ..+++|++|+++.|.+.....    ......+..+++|+.|+++.|.+
T Consensus       260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcC
Confidence            66655443332222  235667777776665543321    01222334566777777766654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.65  E-value=8e-08  Score=90.37  Aligned_cols=85  Identities=25%  Similarity=0.145  Sum_probs=42.4

Q ss_pred             hcCCCCCEEEcCC-Ccccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440           82 EGMEGLKVLQFPG-IGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL  157 (443)
Q Consensus        82 ~~l~~L~~L~l~~-~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~  157 (443)
                      ..+.+|++|+|++ |.++.++ ..|+.+++|++|++++|.+..  +..++++++|++|+|++|.++.+|..+.....|+.
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~  107 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceE
Confidence            4455555555553 5554443 334555555555555555544  23445555555555555555555544332222555


Q ss_pred             EeccCCccc
Q 013440          158 LDLSNCWWL  166 (443)
Q Consensus       158 L~l~~~~~~  166 (443)
                      |++.+|.+.
T Consensus       108 l~l~~N~~~  116 (347)
T 2ifg_A          108 LVLSGNPLH  116 (347)
T ss_dssp             EECCSSCCC
T ss_pred             EEeeCCCcc
Confidence            555554433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.62  E-value=1.1e-07  Score=89.42  Aligned_cols=102  Identities=23%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             CEEEcCCC-ccccccccccCCCCCcEEEecC-CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccC
Q 013440           88 KVLQFPGI-GSSSLPSSLGRLINLQTLCLDW-CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSN  162 (443)
Q Consensus        88 ~~L~l~~~-~~~~~p~~l~~l~~L~~L~l~~-~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~  162 (443)
                      ..++.+++ .++.+|. +..+.+|++|++++ |.+.. + ..++++++|++|+|++|.++.++. .+.++++|+.|++++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35688887 8889999 99999999999996 88888 3 678999999999999999997655 579999999999999


Q ss_pred             CccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          163 CWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      |.+ ..+|...+..+. |+.|++.+|.+.-
T Consensus        90 N~l-~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NAL-ESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCC-SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             Ccc-ceeCHHHcccCC-ceEEEeeCCCccC
Confidence            654 566665455555 9999999887654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.57  E-value=2.1e-08  Score=83.16  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=73.1

Q ss_pred             cccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCc----cCcccceeccccccccccccc
Q 013440          284 QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV----FPLLEALSLMFLTNLETICYS  359 (443)
Q Consensus       284 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~~~~  359 (443)
                      .+|+.|++++|. +.+.....  +..|++|++|+|++|.++++..    ...+..    .+.|++|++++|+++++-+..
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~g----L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDH--MEGLQYVEKIRLCKCHYIEDGC----LERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGG--GTTCSCCCEEEEESCTTCCHHH----HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             ceEeEEeCcCCC-ccHHHHHH--hcCCCCCCEEEeCCCCccCHHH----HHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            368888888887 44332221  3489999999999999887532    122222    368999999999999887654


Q ss_pred             cccccccccccceeeeccCcCccccc--Chhhhhcccccc
Q 013440          360 QLREDQSFSNLRIINVDSCRKLKYLF--SFSMAKNLLRLQ  397 (443)
Q Consensus       360 ~~~~~~~~~~L~~L~i~~c~~l~~~~--~~~~~~~~~~L~  397 (443)
                      .   ...+++|++|++++|+.+++..  ...+-..+|.++
T Consensus       134 ~---L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          134 A---LHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             H---GGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             H---HhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            3   3468999999999999999864  222233556544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.28  E-value=5.4e-05  Score=72.24  Aligned_cols=297  Identities=9%  Similarity=0.070  Sum_probs=151.8

Q ss_pred             CCC-CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCc---ccccc-ccccCCCCCcEEEecCCCCCC--cccccCC
Q 013440           57 QCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG---SSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQL  129 (443)
Q Consensus        57 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l  129 (443)
                      +++ .|+.+.+...   ...+....|.+|.+|+.+.+..+.   ++.++ ..|.+|.+|+.+.+..+ +..  ...+..+
T Consensus        61 ~~~~~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c  136 (394)
T 4gt6_A           61 NYKYVLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC  136 (394)
T ss_dssp             TCCSCCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred             CCCCcCEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence            453 5888888654   356666678888999998887654   44443 44667788877766543 222  3567788


Q ss_pred             CCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccC
Q 013440          130 KKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER  208 (443)
Q Consensus       130 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~  208 (443)
                      .+|+.+.+... +..++ ..+..+.+|+.+.+..+  ...+....+. ..+|+.+.+..+-. ....        ..+..
T Consensus       137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~--------~af~~  203 (394)
T 4gt6_A          137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVT-RIGT--------NAFSE  203 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCC-EECT--------TTTTT
T ss_pred             cccccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCccc-cccc--------chhhh
Confidence            88888888654 33333 34677888888888652  3334433343 35688777654321 1111        34566


Q ss_pred             CCCCCEEEeecCCCCCCCCcccc-ccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccc
Q 013440          209 LTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE  287 (443)
Q Consensus       209 l~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  287 (443)
                      +.++............+...... .......+...           .....+..+.+...  ...+. ..++..+ .+|+
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ip~~--v~~i~-~~aF~~c-~~L~  268 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQREDPAFKIPNG--VARIE-THAFDSC-AYLA  268 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTTCCCSEEECCTT--EEEEC-TTTTTTC-SSCC
T ss_pred             ccccceecccccccccccceeeccccccccccccc-----------ccccccceEEcCCc--ceEcc-cceeeec-cccc
Confidence            77777776665444333322211 11111111000           01111222222110  00000 1112222 5555


Q ss_pred             eeeccccCCcccc-ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccc
Q 013440          288 DLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQS  366 (443)
Q Consensus       288 ~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  366 (443)
                      .+.+....  ..+ ...+   ..|++|+.+.+..  .++.+++.    .-..+.+|+.+.|..  .++.+....+   ..
T Consensus       269 ~i~lp~~~--~~I~~~aF---~~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF---~~  332 (394)
T 4gt6_A          269 SVKMPDSV--VSIGTGAF---MNCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILDDAF---AG  332 (394)
T ss_dssp             EEECCTTC--CEECTTTT---TTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTT---TT
T ss_pred             EEeccccc--ceecCccc---ccccccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehHhHh---hC
Confidence            55553211  111 1112   2566677766642  34444311    233456677776653  4555554332   23


Q ss_pred             ccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440          367 FSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC  404 (443)
Q Consensus       367 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C  404 (443)
                      +.+|+++.|-  ..++.++..+ ..+|.+|+.+.+.+.
T Consensus       333 C~~L~~i~ip--~sv~~I~~~a-F~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          333 CEQLERIAIP--SSVTKIPESA-FSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEEEC--TTCCBCCGGG-GTTCTTCCEEEESSC
T ss_pred             CCCCCEEEEC--cccCEEhHhH-hhCCCCCCEEEECCc
Confidence            5667777773  3466665433 466777777776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=1.1e-06  Score=74.35  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=60.5

Q ss_pred             HHhcCCCCCEEEcCCC-cccc-----ccccccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC----
Q 013440           80 FFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN----  143 (443)
Q Consensus        80 ~~~~l~~L~~L~l~~~-~~~~-----~p~~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~----  143 (443)
                      ++...+.|++|++++| .+..     +...+...++|++|++++|.+.+  .    ..+...++|++|++++|.++    
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455666666776666 5542     34445556666677776666654  1    33344456666666666665    


Q ss_pred             -CCchhhcCCCCCCEEec--cCCccccccch---HHhhcCCCCcEEEccCCCC
Q 013440          144 -QLPVEIGQLTRLQLLDL--SNCWWLEVIAP---NVISKLSQLEELYMGNGFS  190 (443)
Q Consensus       144 -~lp~~~~~l~~L~~L~l--~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~  190 (443)
                       .+...+...++|+.|++  ++|.+-+....   ..+...++|++|++++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence             23444555566666666  44443332211   1234445666666665554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.24  E-value=0.00014  Score=69.26  Aligned_cols=143  Identities=12%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             CeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCC-CCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEE
Q 013440           39 PIAISLPHRDIQELPE--RLQCPNLQLFLLYTEG-NGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLC  114 (443)
Q Consensus        39 l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~  114 (443)
                      ++.+.+... ++.+..  +.+|.+|+.+.+..+. .....+....|.+|..|+.+.+..+ ++.++ ..+..|.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            555555532 333332  2267777777776542 1134555566677777777666543 33333 3456677777777


Q ss_pred             ecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          115 LDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       115 l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      +.... ..  -..+..+..|..+.+..+ ++.+........+|+.+.+...  ...+....+..+.++.......
T Consensus       144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~  214 (394)
T 4gt6_A          144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDS  214 (394)
T ss_dssp             CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECC
T ss_pred             cccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccc
Confidence            75432 22  255666777777777554 4433333233456777766542  1222222356666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.24  E-value=1.9e-06  Score=80.96  Aligned_cols=174  Identities=17%  Similarity=0.174  Sum_probs=113.7

Q ss_pred             hccCCCCeEEeCCCCCCC----------CCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-c
Q 013440           33 ETIQKDPIAISLPHRDIQ----------ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-L  100 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~  100 (443)
                      .+.+++|+.|.+.+...+          .+.... .+|+|+.|.++++..  ..++. +  .+++|+.|++..|.+.. .
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~--~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K--PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C--BCTTCSEEEEECSBCCHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c--cCCCCcEEEEecCCCChHH
Confidence            456789999998764332          122222 789999999998842  23333 2  48999999999888753 2


Q ss_pred             ccccc--CCCCCcEEEecCC--C------CCCc-ccc--cCCCCCCEEEcCCCCCCC-Cchhh---cCCCCCCEEeccCC
Q 013440          101 PSSLG--RLINLQTLCLDWC--E------LADI-AAI--GQLKKLEILSLAYSNINQ-LPVEI---GQLTRLQLLDLSNC  163 (443)
Q Consensus       101 p~~l~--~l~~L~~L~l~~~--~------l~~~-~~~--~~l~~L~~L~l~~~~~~~-lp~~~---~~l~~L~~L~l~~~  163 (443)
                      ...+.  .+++|++|+++.+  .      +..+ ..+  ..+++|++|++.+|.+.. .+..+   ..+++|++|+++.|
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            22333  6899999998632  1      1111 122  358999999999998762 22222   36889999999987


Q ss_pred             ccccccchHH---hhcCCCCcEEEccCCCCCcccccCCCchhhhhccC-CCCCCEEEeecCC
Q 013440          164 WWLEVIAPNV---ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPD  221 (443)
Q Consensus       164 ~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  221 (443)
                      .+.+.....+   +..+++|+.|+++.|.+.....        ..+.. +  ...++++.+.
T Consensus       290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~--------~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK--------KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH--------HHHHHHC--CSEEECCSBC
T ss_pred             CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH--------HHHHHHc--CCEEEecCCc
Confidence            6555322221   3567899999999998765433        33333 2  3557787665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.16  E-value=2.3e-06  Score=72.49  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=80.4

Q ss_pred             CCCCCcEEEcccC-CCCCccC---cHHHHhcCCCCCEEEcCCCcccc-----ccccccCCCCCcEEEecCCCCCC-----
Q 013440           57 QCPNLQLFLLYTE-GNGPMQV---SDHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD-----  122 (443)
Q Consensus        57 ~~~~L~~L~l~~~-~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~l~~~~l~~-----  122 (443)
                      ..+.|++|++++| .. .+.-   ....+...+.|++|++++|.+..     +...+...++|++|++++|.+.+     
T Consensus        34 ~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            5778888999888 64 2211   12223567889999999998863     45556677889999999999876     


Q ss_pred             -cccccCCCCCCEEEc--CCCCCC-----CCchhhcCCCCCCEEeccCCcc
Q 013440          123 -IAAIGQLKKLEILSL--AYSNIN-----QLPVEIGQLTRLQLLDLSNCWW  165 (443)
Q Consensus       123 -~~~~~~l~~L~~L~l--~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~  165 (443)
                       ...+...++|++|++  ++|.++     .+...+...++|+.|++++|.+
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence             256677788999999  778887     2455667788999999998754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=2.8e-05  Score=69.35  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=51.7

Q ss_pred             cCCCCCcEEEecCCCCCCc----ccccCCCCCCEEEcCCCCCCCCchhhcCCC--CCCEEeccCCccccccc------hH
Q 013440          105 GRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQLT--RLQLLDLSNCWWLEVIA------PN  172 (443)
Q Consensus       105 ~~l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~  172 (443)
                      ..+++|++|++++|.+..+    ..++.+++|+.|+|++|.++.+ ..+..++  +|+.|++.+|++.+..|      ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            3567777777777776662    2334677777777777777755 2233333  77888888877665443      23


Q ss_pred             HhhcCCCCcEEEc
Q 013440          173 VISKLSQLEELYM  185 (443)
Q Consensus       173 ~l~~l~~L~~L~l  185 (443)
                      ++..+++|+.|+-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4677888888873

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.69  E-value=6.4e-05  Score=67.04  Aligned_cols=88  Identities=22%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             cCCCCCCEEEcCCCCCCCCc---hhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhh
Q 013440          127 GQLKKLEILSLAYSNINQLP---VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASL  203 (443)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  203 (443)
                      .++++|+.|+|++|.++.++   ..+..+++|+.|++++|.+.+.-....+..+ +|++|++.+|.+....+.. .....
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~-~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQ-STYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSH-HHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcc-hhHHH
Confidence            45788888888888887543   4566788888888888655443111112333 7888888888775422100 00111


Q ss_pred             hhccCCCCCCEEE
Q 013440          204 VELERLTELTTLE  216 (443)
Q Consensus       204 ~~l~~l~~L~~L~  216 (443)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3466778888765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.63  E-value=0.0057  Score=57.64  Aligned_cols=298  Identities=12%  Similarity=0.069  Sum_probs=126.8

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~  133 (443)
                      ...+|+.+.+...   ...++...|.+|.+|+.+.+..+ ++.++ ..|.++ +|+.+.+..+ +..  -..+..+ +|+
T Consensus        44 ~~~~i~~v~ip~~---vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~  116 (379)
T 4h09_A           44 DRDRISEVRVNSG---ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD  116 (379)
T ss_dssp             GGGGCSEEEECTT---EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred             cccCCEEEEeCCC---ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence            3445666666432   24555555666677777766543 44443 224444 4555544322 222  1333333 566


Q ss_pred             EEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC----CCchhhhhccCC
Q 013440          134 ILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG----GSNASLVELERL  209 (443)
Q Consensus       134 ~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~~l~~l  209 (443)
                      .+.+..+ ++.+........+|....+...  ...+....+..+.+++...+............    ........+...
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             cccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            6666543 2222222111223444443321  12222222445555655554432211110000    000000112233


Q ss_pred             CCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccce
Q 013440          210 TELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTED  288 (443)
Q Consensus       210 ~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  288 (443)
                      ..+..+.+............ .+..|+.+.+...  ........+..+..|+.+.+..+  ...+. ...+.. +.+|+.
T Consensus       194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~-~~aF~~-~~~l~~  267 (379)
T 4h09_A          194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIG-SFLLQN-CTALKT  267 (379)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEEC-TTTTTT-CTTCCE
T ss_pred             ccccccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeC-ccccce-eehhcc
Confidence            34444433322211111111 3355555544211  00011122356677777777653  11111 112222 256777


Q ss_pred             eeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccccc
Q 013440          289 LWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFS  368 (443)
Q Consensus       289 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  368 (443)
                      +.+..  .+..+....  ...|++|+.+.+.+. .++.+.+.    .-..+.+|+.+.+..  .++.++...+.   .+.
T Consensus       268 i~l~~--~i~~i~~~a--F~~c~~L~~i~l~~~-~i~~I~~~----aF~~c~~L~~i~lp~--~l~~I~~~aF~---~C~  333 (379)
T 4h09_A          268 LNFYA--KVKTVPYLL--CSGCSNLTKVVMDNS-AIETLEPR----VFMDCVKLSSVTLPT--ALKTIQVYAFK---NCK  333 (379)
T ss_dssp             EEECC--CCSEECTTT--TTTCTTCCEEEECCT-TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTT---TCT
T ss_pred             ccccc--cceeccccc--ccccccccccccccc-ccceehhh----hhcCCCCCCEEEcCc--cccEEHHHHhh---CCC
Confidence            76643  222222211  236788888888654 45555311    234557778877753  46666543322   355


Q ss_pred             ccceeeeccCcCcccccC
Q 013440          369 NLRIINVDSCRKLKYLFS  386 (443)
Q Consensus       369 ~L~~L~i~~c~~l~~~~~  386 (443)
                      +|+++.+-  ..++.++.
T Consensus       334 ~L~~i~ip--~~v~~I~~  349 (379)
T 4h09_A          334 ALSTISYP--KSITLIES  349 (379)
T ss_dssp             TCCCCCCC--TTCCEECT
T ss_pred             CCCEEEEC--CccCEEch
Confidence            66666663  24555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.51  E-value=0.01  Score=55.87  Aligned_cols=78  Identities=12%  Similarity=0.166  Sum_probs=38.3

Q ss_pred             HhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440           81 FEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL  157 (443)
Q Consensus        81 ~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~  157 (443)
                      +....+|+.+.+.. .++.++ ..|.+|.+|+.+.+..+ +..  -.++.++ +|..+.+..+ ++.+........+|+.
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~  117 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD  117 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence            34455666666653 344443 33566666776666432 332  2444454 4555544332 3333333223335666


Q ss_pred             EeccC
Q 013440          158 LDLSN  162 (443)
Q Consensus       158 L~l~~  162 (443)
                      +.+..
T Consensus       118 i~lp~  122 (379)
T 4h09_A          118 FEFPG  122 (379)
T ss_dssp             EECCT
T ss_pred             ccCCC
Confidence            66654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.90  E-value=0.015  Score=48.95  Aligned_cols=83  Identities=14%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             HHhcCCCCCEEEcCCC-cccc-----ccccccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC----
Q 013440           80 FFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN----  143 (443)
Q Consensus        80 ~~~~l~~L~~L~l~~~-~~~~-----~p~~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~----  143 (443)
                      +..+-+.|+.|+++++ .+..     +.+.+..-..|+.|++++|.+.+  .    ..+..-..|+.|+|+.|.++    
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3344566666776664 4431     33445555566777777766655  1    33334456666666666665    


Q ss_pred             -CCchhhcCCCCCCEEeccC
Q 013440          144 -QLPVEIGQLTRLQLLDLSN  162 (443)
Q Consensus       144 -~lp~~~~~l~~L~~L~l~~  162 (443)
                       .+-..+..-+.|+.|++++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHhhCCceeEEECCC
Confidence             2333344444566666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.83  E-value=0.012  Score=49.49  Aligned_cols=113  Identities=17%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             cCCCCCcEEEecCC-CCCC------cccccCCCCCCEEEcCCCCCC-----CCchhhcCCCCCCEEeccCCccccccchH
Q 013440          105 GRLINLQTLCLDWC-ELAD------IAAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAPN  172 (443)
Q Consensus       105 ~~l~~L~~L~l~~~-~l~~------~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~  172 (443)
                      ..-+.|++|+++++ .+.+      ...+..-..|+.|+|++|.+.     .+...+..-+.|+.|+++.|.+-+.....
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44567788888775 5654      144555667777777777776     33444455566777777776544433222


Q ss_pred             H---hhcCCCCcEEEccCCC---CCcccccCCCchhhhhccCCCCCCEEEeecCC
Q 013440          173 V---ISKLSQLEELYMGNGF---SGWEKVEGGSNASLVELERLTELTTLEIEVPD  221 (443)
Q Consensus       173 ~---l~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  221 (443)
                      +   +..-+.|++|+++++.   +.....    ......+..-+.|++|++..+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~----~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVE----MDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHH----HHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHH----HHHHHHHHhCCCcCeEeccCCC
Confidence            1   3333457777766432   221110    0122344555566666665443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.95  E-value=0.11  Score=40.49  Aligned_cols=54  Identities=9%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             EEeCCCCCCC--CCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcc
Q 013440           41 AISLPHRDIQ--ELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS   97 (443)
Q Consensus        41 ~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   97 (443)
                      +++.++.+++  .+|... .++|+.|++++|.+  ..++...|..+++|++|+|.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCe
Confidence            4455555554  444321 22456666666653  455555555555666666555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.79  E-value=0.18  Score=39.19  Aligned_cols=53  Identities=21%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             EEEecCCCCC--C-cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccc
Q 013440          112 TLCLDWCELA--D-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL  166 (443)
Q Consensus       112 ~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~  166 (443)
                      .++.++..++  . |..+  -.+|++|+|++|.++.+|.. +..+++|+.|++.+|+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5556666555  3 3221  13577777777777766654 456777777777776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	443
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           + L    I  +        L       E N            ++ L  L       S + 
Sbjct: 268 LKLGANQISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
             +  L  LQ L     +++D++++  L  +  LS  ++ I+ L   +  LTR+  L L+
Sbjct: 324 P-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 381

Query: 162 N 162
           +
Sbjct: 382 D 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 9e-09
 Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L NL  L L +  ++DI+ +  L KL+ L  A + ++ +   +  LT +  L   +    
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

Query: 167 EVIAPNVISKLSQLEELYMGN 187
           ++     ++ L+++ +L + +
Sbjct: 365 DLTP---LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
             S   L  + TL  D   +  I  +  L  L  ++ + + +  +   +  LT+L  + +
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 95

Query: 161 SNCWW 165
           +N   
Sbjct: 96  NNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L       L    + D  +   L ++  L      I  +   +  L  L  ++ SN   L
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QL 78

Query: 167 EVIAPNVISKLSQLEELYMGNGFSGW 192
             I P  +  L++L ++ M N     
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIAD 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 79  HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA 138
              +    L+ L         LP+       L+ L   +  LA++  +   + L+ L + 
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL--PQNLKQLHVE 332

Query: 139 YSNINQLPVEIGQLTRLQL 157
           Y+ + + P     +  L++
Sbjct: 333 YNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
             +L+ L +   +L ++ A+    +LE L  +++++ ++P     L +   L +     L
Sbjct: 283 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQNLKQ---LHVEYN-PL 336

Query: 167 EVIAPNVISKLSQL 180
               P++   +  L
Sbjct: 337 REF-PDIPESVEDL 349

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 108 INLQTLCLDWCELADIAA---IGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLD 159
           +++Q+L +   EL+D      +  L++ +++ L    +       +   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 160 LSNC----WWLEVIAPNVISKLSQLEELYMGNGFSGW 192
           L +       +  +   + +   ++++L + N     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI------AAIGQLKKLEILSLAYSNIN 143
           +Q   +  +     L  L   Q + LD C L +       +A+     L  L+L  + + 
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 144 QLPVEI------GQLTRLQLLDLSNCWW 165
            + V            ++Q L L NC  
Sbjct: 69  DVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 111 QTLCLDWCELADIAAIGQL--KKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
           QTL L    L      G+L  + +       S ++Q   E     R+Q +DLSN      
Sbjct: 3   QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212
               ++S+ S+L+ L +        ++      +L +   L  L
Sbjct: 62  TLHGILSQCSKLQNLSL-----EGLRLSDPIVNTLAKNSNLVRL 100

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
             L   + +  +     LD   L     +       +L+   S    L +    +  L  
Sbjct: 10  EQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69

Query: 158 LDLSNCW-WLEVIAPNVISKLSQLEELYM 185
           L+LSN   +      +++ K   L+ L +
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
           L  L TL L+  +++DI  +  L KL+ L L+ ++I+ L   +  L  L +L+L +
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
            E +  +  L        +LP +L  L  L+ L      L ++  +  L +L+ L L  +
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75

Query: 141 NINQLPV--EIGQLTRLQLLDLSN--CWWLEVIAPNVISKLSQLEEL 183
            + Q      +    RL LL+L        E I   +   L  +  +
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
             + QLK L  L+++++N+     + G L R  +   +N   L
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCEL-ADIAAIGQLKKLEILSLAYSN 141
             +LP  L +L  L +L + +  L  +I   G L++ ++ + A + 
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 91  QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEIL 135
             P I    + ++L  L   + L L    +  I+++  ++ L IL
Sbjct: 33  MIPPI--EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRIL 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWW 165
           L N   +      + D      L  +  LS   + +  +   +  L  L  L+L +   
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 79  HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSL 137
                +  L  L+      S +   L  L NL  + L   +++D++ +     L I++L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 30/164 (18%), Positives = 67/164 (40%), Gaps = 9/164 (5%)

Query: 46  HRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSL 104
              ++++P+ L  P+  L  L  + N   ++ D  F+ ++ L  L       S + P + 
Sbjct: 19  DLGLEKVPKDLP-PDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 105 GRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNC 163
             L+ L+ L L   +L ++      K L+ L +  + I ++   +   L ++ +++L   
Sbjct: 76  APLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 164 WWLEV-IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL 206
                 I       + +L  + + +  +    +  G   SL EL
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIAD--TNITTIPQGLPPSLTEL 176

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWL 166
             E              IL ++ + I+ LP      L +L+     N   L
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	443
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.81
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.05

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=3.4e-20  Score=175.82  Aligned_cols=323  Identities=17%  Similarity=0.136  Sum_probs=207.1

Q ss_pred             hccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440           33 ETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  112 (443)
                      ...+.++++|++.+++++.+.+...+++|++|++++|..  ..++.  ++++++|++|++++|.+..+++ ++.+++|++
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l--~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~  114 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG  114 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             HHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcC--CCCcc--ccCCcccccccccccccccccc-ccccccccc
Confidence            345678999999999998887767899999999999985  56664  6889999999999999988764 788999999


Q ss_pred             EEecCCCCCCcccccCCCCCCEEEcCCCCCCCCch--------------------hhcCCCCCCEEeccCCccccccchH
Q 013440          113 LCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV--------------------EIGQLTRLQLLDLSNCWWLEVIAPN  172 (443)
Q Consensus       113 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~  172 (443)
                      ++++++.+.+.........+.......+.+..+..                    .+...+.........+...  ... 
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-  191 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DIS-  191 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCG-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--ccc-
Confidence            99999888775445555666666655443332111                    1122222222222222111  111 


Q ss_pred             HhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCch
Q 013440          173 VISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPL  252 (443)
Q Consensus       173 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  252 (443)
                      ....+++++.+.++.+.+....          ..+.+++|++|++++|.+..++....+++|+.+++..+.....   ..
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~----------~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~  258 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT----------PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL---AP  258 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG----------GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---GG
T ss_pred             ccccccccceeeccCCccCCCC----------cccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC---Cc
Confidence            1456677777777776654332          2455667777888777776665433557777777654433221   33


Q ss_pred             hcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeeccccc
Q 013440          253 LVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR  332 (443)
Q Consensus       253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  332 (443)
                      +..+++|+.++++++......+    +.. ++.++.+.+..+.... +..    ...++++++|+++++ +++.+.    
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~----~~~-~~~l~~l~~~~n~l~~-~~~----~~~~~~l~~L~ls~n-~l~~l~----  323 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISP----LAG-LTALTNLELNENQLED-ISP----ISNLKNLTYLTLYFN-NISDIS----  323 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG----GTT-CTTCSEEECCSSCCSC-CGG----GGGCTTCSEEECCSS-CCSCCG----
T ss_pred             ccccccCCEeeccCcccCCCCc----ccc-cccccccccccccccc-ccc----cchhcccCeEECCCC-CCCCCc----
Confidence            5667777888777765532211    121 2566777766554322 222    225778888888877 444432    


Q ss_pred             ccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeecc
Q 013440          333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED  403 (443)
Q Consensus       333 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~  403 (443)
                        ....+|+|+.|++++| .+++++.     ...+++|++|++++| .++++++   +.++++|+.|+|++
T Consensus       324 --~l~~l~~L~~L~L~~n-~l~~l~~-----l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~  382 (384)
T d2omza2         324 --PVSSLTKLQRLFFANN-KVSDVSS-----LANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLND  382 (384)
T ss_dssp             --GGGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCC
T ss_pred             --ccccCCCCCEEECCCC-CCCCChh-----HcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCC
Confidence              3566788888888876 5665542     345788888888764 6777653   46678888887764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=4.9e-18  Score=160.69  Aligned_cols=306  Identities=16%  Similarity=0.151  Sum_probs=204.4

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR  106 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~  106 (443)
                      +......+.++++++|++++|.++.+++..++++|+.|++++|..  ..++.  ++++++|+.|++.++.++.++.. ..
T Consensus        56 I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i--~~i~~--l~~l~~L~~L~~~~~~~~~~~~~-~~  130 (384)
T d2omza2          56 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITDIDPL-KN  130 (384)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGGG-TT
T ss_pred             CCCccccccCCCCCEEeCcCCcCCCCccccCCccccccccccccc--ccccc--ccccccccccccccccccccccc-cc
Confidence            444556778899999999999999999878999999999999986  45554  58999999999999988765432 23


Q ss_pred             CCCCcEEEecCCCCCC---------------------cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCcc
Q 013440          107 LINLQTLCLDWCELAD---------------------IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWW  165 (443)
Q Consensus       107 l~~L~~L~l~~~~l~~---------------------~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~  165 (443)
                      ...+.......+.+..                     ...+.............+.. ........++++..+++++|..
T Consensus       131 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~l~~n~i  209 (384)
T d2omza2         131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQI  209 (384)
T ss_dssp             CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc-ccccccccccccceeeccCCcc
Confidence            3444444443332211                     12222333333333333322 2334566777888888877544


Q ss_pred             ccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCC
Q 013440          166 LEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGP  245 (443)
Q Consensus       166 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~  245 (443)
                      .+ ++.  ...+++|++|++++|.+...          ..++.+++|+.|++.+|.+..++....+++|+.+++......
T Consensus       210 ~~-~~~--~~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~  276 (384)
T d2omza2         210 SD-ITP--LGILTNLDELSLNGNQLKDI----------GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS  276 (384)
T ss_dssp             CC-CGG--GGGCTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred             CC-CCc--ccccCCCCEEECCCCCCCCc----------chhhcccccchhccccCccCCCCcccccccCCEeeccCcccC
Confidence            33 332  35667788888887765432          346677788888888887776665446678888877544433


Q ss_pred             CCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCce
Q 013440          246 EDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL  325 (443)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  325 (443)
                      ..   ..+..+..++.+.+..|.+...    ..+. .+++++.|+++++.. ..+..    +..+++|++|++++| .++
T Consensus       277 ~~---~~~~~~~~l~~l~~~~n~l~~~----~~~~-~~~~l~~L~ls~n~l-~~l~~----l~~l~~L~~L~L~~n-~l~  342 (384)
T d2omza2         277 NI---SPLAGLTALTNLELNENQLEDI----SPIS-NLKNLTYLTLYFNNI-SDISP----VSSLTKLQRLFFANN-KVS  342 (384)
T ss_dssp             CC---GGGTTCTTCSEEECCSSCCSCC----GGGG-GCTTCSEEECCSSCC-SCCGG----GGGCTTCCEEECCSS-CCC
T ss_pred             CC---Cccccccccccccccccccccc----cccc-hhcccCeEECCCCCC-CCCcc----cccCCCCCEEECCCC-CCC
Confidence            22   3346677778888887655321    1222 237899999988754 33332    347899999999998 566


Q ss_pred             eecccccccccCccCcccceeccccccccccccccccccccccccceeeecc
Q 013440          326 HIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS  377 (443)
Q Consensus       326 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~  377 (443)
                      .++      ....+++|++|+++++ .+++++.     ...+++|++|+|++
T Consensus       343 ~l~------~l~~l~~L~~L~l~~N-~l~~l~~-----l~~l~~L~~L~L~~  382 (384)
T d2omza2         343 DVS------SLANLTNINWLSAGHN-QISDLTP-----LANLTRITQLGLND  382 (384)
T ss_dssp             CCG------GGGGCTTCCEEECCSS-CCCBCGG-----GTTCTTCSEEECCC
T ss_pred             CCh------hHcCCCCCCEEECCCC-cCCCChh-----hccCCCCCEeeCCC
Confidence            553      4567899999999875 6776642     46689999999876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=4.9e-17  Score=148.83  Aligned_cols=266  Identities=17%  Similarity=0.169  Sum_probs=140.0

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEc
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL  137 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l  137 (443)
                      .+.++-++...  ..+|..+   .+.+++|++++|.++.+|+ .|..+++|++|++++|.+..  +..+.++++|++|++
T Consensus        12 ~~~~~C~~~~L--~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCC--CccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            34444444432  4455433   2456677777777766664 46667777777777777666  345667777777777


Q ss_pred             CCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEe
Q 013440          138 AYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (443)
Q Consensus       138 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (443)
                      ++|+++.+|..+  .+.+..|.+..+. ...++...+.....++.+....+.......      ....+..+++|+.+++
T Consensus        87 ~~n~l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~------~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_          87 SKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             CSSCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEEC
T ss_pred             cCCccCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCC------CccccccccccCcccc
Confidence            777777666532  3466777776643 334444445556666667666554322211      1244667778888888


Q ss_pred             ecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCc
Q 013440          218 EVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV  297 (443)
Q Consensus       218 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (443)
                      ..|.+..++.. .+++|+.+++                         .+|......  +..+..+ +.++.|+++++...
T Consensus       158 ~~n~l~~l~~~-~~~~L~~L~l-------------------------~~n~~~~~~--~~~~~~~-~~l~~L~~s~n~l~  208 (305)
T d1xkua_         158 ADTNITTIPQG-LPPSLTELHL-------------------------DGNKITKVD--AASLKGL-NNLAKLGLSFNSIS  208 (305)
T ss_dssp             CSSCCCSCCSS-CCTTCSEEEC-------------------------TTSCCCEEC--TGGGTTC-TTCCEEECCSSCCC
T ss_pred             ccCCccccCcc-cCCccCEEEC-------------------------CCCcCCCCC--hhHhhcc-cccccccccccccc
Confidence            88877666654 2345555544                         332221111  1111111 44455555544333


Q ss_pred             cccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccc---cccccccceee
Q 013440          298 QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRIIN  374 (443)
Q Consensus       298 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~~~L~~L~  374 (443)
                      ...+..+.   .+++|++|+|++| .++.++     .....+++|+.|+++++ +++.++...+..   ....++|+.|+
T Consensus       209 ~~~~~~~~---~l~~L~~L~L~~N-~L~~lp-----~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         209 AVDNGSLA---NTPHLRELHLNNN-KLVKVP-----GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             EECTTTGG---GSTTCCEEECCSS-CCSSCC-----TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             cccccccc---ccccceeeecccc-cccccc-----cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEE
Confidence            22222222   4555666666555 343332     12344555666666553 455554322211   12345666666


Q ss_pred             eccCc
Q 013440          375 VDSCR  379 (443)
Q Consensus       375 i~~c~  379 (443)
                      +.+++
T Consensus       279 L~~N~  283 (305)
T d1xkua_         279 LFSNP  283 (305)
T ss_dssp             CCSSS
T ss_pred             CCCCc
Confidence            76654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=2.4e-18  Score=158.35  Aligned_cols=220  Identities=15%  Similarity=0.132  Sum_probs=146.6

Q ss_pred             CCCcEEEcccCCCCCc--cCcHHHHhcCCCCCEEEcCC-Cccc-cccccccCCCCCcEEEecCCCCCC--cccccCCCCC
Q 013440           59 PNLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKL  132 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L  132 (443)
                      .+++.|+++++.. ..  .+|.++ .++++|++|++++ |.++ .+|+.++++++|++|++++|.+..  +..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l-~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNL-PKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCC-SSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCC-CCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            4688999999876 33  567775 7899999999986 6676 589999999999999999999877  4667889999


Q ss_pred             CEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCC-cEEEccCCCCCcccccCCCchhhhhccCCC
Q 013440          133 EILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL-EELYMGNGFSGWEKVEGGSNASLVELERLT  210 (443)
Q Consensus       133 ~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~  210 (443)
                      ++++++.|.+. .+|..+.++++|+.+++++|...+.+|.. +..+.++ +.+.++.|.+....+        ..++.+.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~--------~~~~~l~  198 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP--------PTFANLN  198 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC--------GGGGGCC
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccccccc--------ccccccc
Confidence            99999998655 67888999999999999998777778875 5666665 777777776654443        3444443


Q ss_pred             CCCEEEeecCCCC-CCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhccccee
Q 013440          211 ELTTLEIEVPDAE-ILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDL  289 (443)
Q Consensus       211 ~L~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  289 (443)
                      . ..+++..+... .+|..                        ...++.++.+++..+.....++.   +.. +++++.|
T Consensus       199 ~-~~l~l~~~~~~~~~~~~------------------------~~~~~~l~~l~~~~~~l~~~~~~---~~~-~~~L~~L  249 (313)
T d1ogqa_         199 L-AFVDLSRNMLEGDASVL------------------------FGSDKNTQKIHLAKNSLAFDLGK---VGL-SKNLNGL  249 (313)
T ss_dssp             C-SEEECCSSEEEECCGGG------------------------CCTTSCCSEEECCSSEECCBGGG---CCC-CTTCCEE
T ss_pred             c-ccccccccccccccccc------------------------ccccccccccccccccccccccc---ccc-ccccccc
Confidence            3 24555543331 11111                        13344555555555444332221   111 2556666


Q ss_pred             eccccCCccccccccccCCCCCCccEEEEecc
Q 013440          290 WLETLEGVQSVVHELDDGEGFPRLKRLLVTDC  321 (443)
Q Consensus       290 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  321 (443)
                      ++++|.....+|..+.   .+++|++|+|++|
T Consensus       250 ~Ls~N~l~g~iP~~l~---~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLT---QLKFLHSLNVSFN  278 (313)
T ss_dssp             ECCSSCCEECCCGGGG---GCTTCCEEECCSS
T ss_pred             cCccCeecccCChHHh---CCCCCCEEECcCC
Confidence            6666655544544443   5666666666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=3e-16  Score=146.19  Aligned_cols=139  Identities=17%  Similarity=0.215  Sum_probs=104.8

Q ss_pred             CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~  116 (443)
                      .++++|++++++++.+|+.  .++|++|++++|..  ..+|.    ...+|+.|++.+|.++.++..   -+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l--~~lp~----~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSL--TELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC--SSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCC--ccccc----chhhhhhhhhhhcccchhhhh---cccccccccc
Confidence            5789999999999989864  57899999999985  57765    357899999999998876532   1469999999


Q ss_pred             CCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440          117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       117 ~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                      +|.+..++.++.+++|++|+++++.+...+...   ..+..+.+..+..... ..  +..++.++.+.+..+....
T Consensus       107 ~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~~~~-~~--l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         107 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEEL-PE--LQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSC-CC--CTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccchhhhccceeecccccccccccccc---ccccchhhcccccccc-cc--ccccccceecccccccccc
Confidence            999888656788999999999999887665543   4555666655332222 11  5667788888887765543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.6e-17  Score=145.32  Aligned_cols=180  Identities=22%  Similarity=0.243  Sum_probs=150.8

Q ss_pred             CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~  116 (443)
                      .....++.++++++.+|+.. .++++.|++++|.+  ..++...|.++++|++|++++|.++.++. ++.+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcC--CCcCHHHhhcccccccccccccccccccc-ccccccccccccc
Confidence            44556788888888888644 26799999999985  67777778999999999999999998875 5789999999999


Q ss_pred             CCCCCC-cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (443)
Q Consensus       117 ~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (443)
                      +|.+.. +..+..+++|++|+++++.+..++. .+..+++++.|++.+|. ...++...+..+++|+.+++++|.+....
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             cccccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccC
Confidence            999988 7788899999999999998886654 46789999999999954 45666666788999999999999887665


Q ss_pred             ccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc
Q 013440          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDF  229 (443)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  229 (443)
                      +        ..++.+++|++|++++|.+..+|..+
T Consensus       165 ~--------~~~~~l~~L~~L~Ls~N~L~~lp~~~  191 (266)
T d1p9ag_         165 A--------GLLNGLENLDTLLLQENSLYTIPKGF  191 (266)
T ss_dssp             T--------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             c--------cccccccccceeecccCCCcccChhH
Confidence            4        56788999999999999999888754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=1.2e-17  Score=153.60  Aligned_cols=224  Identities=14%  Similarity=0.155  Sum_probs=162.8

Q ss_pred             CCCeEEeCCCCCCC---CCCCcC-CCCCCcEEEccc-CCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCC
Q 013440           37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINL  110 (443)
Q Consensus        37 ~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L  110 (443)
                      .+++.|++.++.+.   .+|+.. ++++|++|++++ |.+ .+.+|..+ .++++|++|++++|.+.. .+..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l-~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc-cccccccc-ccccccchhhhccccccccccccccchhhh
Confidence            36899999999885   466555 899999999997 565 56788875 899999999999999987 45668889999


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCC-CEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRL-QLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L-~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (443)
                      +++++++|.+..  +..++++++|+++++++|.+. .+|..+..+.++ +.+++++|.+.+..+.. +..+. ...+++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~-~~~l~l~  205 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccc-ccccccc
Confidence            999999998665  688999999999999999887 788888888876 88888887777666654 55554 4468877


Q ss_pred             CCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEc
Q 013440          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK  265 (443)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  265 (443)
                      .+......+        ..++.+++++.+++.++.+...+..+ ..++|+.+++..+.... ..+..+..+++|+.|+++
T Consensus       206 ~~~~~~~~~--------~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g-~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         206 RNMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             SSEEEECCG--------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECC
T ss_pred             ccccccccc--------ccccccccccccccccccccccccccccccccccccCccCeecc-cCChHHhCCCCCCEEECc
Confidence            766554443        66778899999999988775444333 33555555553332211 111223445555555555


Q ss_pred             Cccccccc
Q 013440          266 GIKKVSIL  273 (443)
Q Consensus       266 ~~~~~~~~  273 (443)
                      +|++.+.+
T Consensus       277 ~N~l~g~i  284 (313)
T d1ogqa_         277 FNNLCGEI  284 (313)
T ss_dssp             SSEEEEEC
T ss_pred             CCcccccC
Confidence            55554333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.8e-17  Score=145.89  Aligned_cols=203  Identities=23%  Similarity=0.278  Sum_probs=106.5

Q ss_pred             cCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcC-CCccccc-cccccCCCCC
Q 013440           35 IQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFP-GIGSSSL-PSSLGRLINL  110 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~-p~~l~~l~~L  110 (443)
                      .++.++.|++++|.++.+++.  .++++|+.|+++++..  ..++...+..+..++.+... .+.+..+ +..+.++++|
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l--~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccc--cccccccccccccccccccccccccccccchhhcccccC
Confidence            344555666666655555542  2555566666655553  33444444555555555543 2333333 3445555566


Q ss_pred             cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (443)
Q Consensus       111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (443)
                      ++|+++++.+..  ...+....+|+.+++++|.++.+|. .+..+++|+.|++++|.+ ..++...+..+++|+.+.++.
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-cccchhhhccccccchhhhhh
Confidence            666666555544  2344455556666666665555443 244555566666655432 333333355555566666555


Q ss_pred             CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (443)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (443)
                      |.+....+        ..++.+++|++|+++.|.+..++..                       .+..+++|+.+++++|
T Consensus       187 N~l~~i~~--------~~f~~l~~L~~L~l~~N~i~~~~~~-----------------------~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         187 NRVAHVHP--------HAFRDLGRLMTLYLFANNLSALPTE-----------------------ALAPLRALQYLRLNDN  235 (284)
T ss_dssp             SCCCEECT--------TTTTTCTTCCEEECCSSCCSCCCHH-----------------------HHTTCTTCCEEECCSS
T ss_pred             ccccccCh--------hHhhhhhhccccccccccccccccc-----------------------ccccccccCEEEecCC
Confidence            55544333        4455555555565555555444432                       2355667777777777


Q ss_pred             cccc
Q 013440          268 KKVS  271 (443)
Q Consensus       268 ~~~~  271 (443)
                      ....
T Consensus       236 ~l~C  239 (284)
T d1ozna_         236 PWVC  239 (284)
T ss_dssp             CEEC
T ss_pred             CCCC
Confidence            6543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=5.8e-16  Score=141.58  Aligned_cols=250  Identities=14%  Similarity=0.140  Sum_probs=179.6

Q ss_pred             hhhhhhhccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc
Q 013440           27 LEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL  104 (443)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l  104 (443)
                      +.+.|+ ..++.+++|++++|.++.+++.  .++++|++|++++|..  ..++...|.+++.|++|++++|.++.+|..+
T Consensus        22 L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~--~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~   98 (305)
T d1xkua_          22 LEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKM   98 (305)
T ss_dssp             CCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred             CCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccc--cccchhhhhCCCccCEecccCCccCcCccch
Confidence            444444 4568899999999999999853  3899999999999996  5565555789999999999999999988653


Q ss_pred             cCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC---CCchhhcCCCCCCEEeccCCccccccchHHhhcCCC
Q 013440          105 GRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN---QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ  179 (443)
Q Consensus       105 ~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  179 (443)
                        ...++.|...++.+..  ...+.....+..++...+...   ..+..+..+++|+.+++.+|.. ..++..   .+++
T Consensus        99 --~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~---~~~~  172 (305)
T d1xkua_          99 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQG---LPPS  172 (305)
T ss_dssp             --CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSS---CCTT
T ss_pred             --hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCcc---cCCc
Confidence              4678889988888776  344566777778887776443   3344577788888888888543 345532   3577


Q ss_pred             CcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccc
Q 013440          180 LEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSE  257 (443)
Q Consensus       180 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~  257 (443)
                      |++|++++|......+        ..+..++.+++|++++|.+..++...  .+++|+.+++..+......  ..+..++
T Consensus       173 L~~L~l~~n~~~~~~~--------~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp--~~l~~l~  242 (305)
T d1xkua_         173 LTELHLDGNKITKVDA--------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP--GGLADHK  242 (305)
T ss_dssp             CSEEECTTSCCCEECT--------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC--TTTTTCS
T ss_pred             cCEEECCCCcCCCCCh--------hHhhccccccccccccccccccccccccccccceeeecccccccccc--ccccccc
Confidence            8888888877655443        56777888888888888887765544  4578888888655544321  3457788


Q ss_pred             cceeEEEcCccccccccc----cchhhHhhcccceeeccccCC
Q 013440          258 ASRLMMLKGIKKVSILQE----NDGTKMLLQRTEDLWLETLEG  296 (443)
Q Consensus       258 ~L~~L~l~~~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~  296 (443)
                      +|+.|++++|.+.. ++.    +.......++|+.|+|.+|+.
T Consensus       243 ~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         243 YIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcC
Confidence            99999999887632 211    111222337789999998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.5e-16  Score=139.28  Aligned_cols=175  Identities=17%  Similarity=0.116  Sum_probs=149.3

Q ss_pred             cCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440           35 IQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~  112 (443)
                      .++.+++|++++|.+..++..  .++++|+.|++++|..  ..++.  +..+++|++|++++|.++..+..+..+++|++
T Consensus        29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l--~~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~  104 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV  104 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred             cCcCCCEEECcCCcCCCcCHHHhhccccccccccccccc--ccccc--cccccccccccccccccccccccccccccccc
Confidence            457899999999999888753  3899999999999986  55654  47899999999999999998888999999999


Q ss_pred             EEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440          113 LCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (443)
Q Consensus       113 L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (443)
                      |+++++.+..  ...+..+.++++|++++|.++.+|.. +..+++|+.+++++|.+ ..++...+..+++|++|++++|.
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc-cccCccccccccccceeecccCC
Confidence            9999999877  46678899999999999999988765 57799999999999654 45555558899999999999999


Q ss_pred             CCcccccCCCchhhhhccCCCCCCEEEeecCCCC
Q 013440          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAE  223 (443)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (443)
                      +...+         ..+..+++|+.|++++|+..
T Consensus       184 L~~lp---------~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         184 LYTIP---------KGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCC---------TTTTTTCCCSEEECCSCCBC
T ss_pred             CcccC---------hhHCCCCCCCEEEecCCCCC
Confidence            87543         45667889999999988764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.2e-15  Score=131.20  Aligned_cols=166  Identities=23%  Similarity=0.298  Sum_probs=126.2

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~  114 (443)
                      .+..++.|.+.++.++.+++...+++|++|++++|.+  ..++.  +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i--~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccc--cCccc--cccCccccccccccccccccc-cccccccccccc
Confidence            4567888888888888877766888888888888875  44554  467888888888888888776 477888888888


Q ss_pred             ecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (443)
Q Consensus       115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (443)
                      ++++.+..+..+..+++++.++++++.++..+ .+.++++|+.+++++|.+. .++.  +..+++|++|++++|.+... 
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~~--l~~l~~L~~L~Ls~N~i~~l-  193 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDL-  193 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccc-cccc--ccCCCCCCEEECCCCCCCCC-
Confidence            88888777667778888888888888777653 4667888888888886543 4443  67788888888888766431 


Q ss_pred             ccCCCchhhhhccCCCCCCEEEeec
Q 013440          195 VEGGSNASLVELERLTELTTLEIEV  219 (443)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~  219 (443)
                               ..+.++++|++|++++
T Consensus       194 ---------~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 ---------RALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---------GGGTTCTTCSEEEEEE
T ss_pred             ---------hhhcCCCCCCEEEccC
Confidence                     3467788888888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.6e-15  Score=130.98  Aligned_cols=189  Identities=17%  Similarity=0.221  Sum_probs=146.8

Q ss_pred             hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440           32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (443)
Q Consensus        32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~  111 (443)
                      ....+.+++.|.+.++.++.+++...+++|+.|++++|..  ..+..  +.+++.|+++++++|.++.++ .+..+++|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i--~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~  110 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             CHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCcee--ecccc--ccccccccccccccccccccc-ccccccccc
Confidence            4455678999999999998887766899999999999885  44443  588999999999999888775 477889999


Q ss_pred             EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      ++.++++....+..+...+.+..+.++++.+.... .+.++++|+.|++.+|.... .+.  ++.+++|+.|++++|.+.
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~-~~~--l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhh-hhcccccccccccccccccc-chh--hcccccceecccCCCccC
Confidence            99999888777666778888999999888776543 36778889999998865433 332  678899999999988764


Q ss_pred             cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEE
Q 013440          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI  239 (443)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l  239 (443)
                      ..          ..++.+++|++|++++|.++.++....+++|+.+++
T Consensus       187 ~l----------~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         187 DI----------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             CC----------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             CC----------hhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEe
Confidence            32          347788899999999988877764334566666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.8e-15  Score=127.86  Aligned_cols=148  Identities=19%  Similarity=0.232  Sum_probs=94.3

Q ss_pred             cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (443)
Q Consensus        35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~  114 (443)
                      .+.+++.|++.++.+..+++...+++|++|++++|..  ..++.  +.++++|++|++++|.+..++. +..+++|++++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l--~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccc--cCccc--ccCCcccccccccccccccccc-ccccccccccc
Confidence            4566777777777776666555677777777777764  33333  4667777777777776666553 56677777777


Q ss_pred             ecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (443)
Q Consensus       115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (443)
                      ++++....+..+..+++|+.|++++|.+..++ .+..+++|+.|++.+|.+ ..++.  ++.+++|++|++++|.+.
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l-~~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQV-TDLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccc-cCCcc--ccCCCCCCEEECCCCCCC
Confidence            77666555555666677777777776666553 356666777777766543 33432  556666666666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=4.6e-14  Score=131.10  Aligned_cols=294  Identities=17%  Similarity=0.064  Sum_probs=181.9

Q ss_pred             CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcC
Q 013440           59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA  138 (443)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~  138 (443)
                      .+++.|+++++..  ..+|+    ..++|++|++++|.++.+|..+   .+|+.|+++++.+..+..+  .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L--~~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGL--SSLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCC--SCCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCC--CCCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh--cccccccccc
Confidence            4688999999985  56774    3578999999999999998654   5789999999987763322  2469999999


Q ss_pred             CCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEee
Q 013440          139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIE  218 (443)
Q Consensus       139 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  218 (443)
                      +|.++.+|. ++++++|+.|++.++... ..+.    ....+..+.+..+.....          ..++.++.++.+.+.
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~~~----------~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEEL----------PELQNLPFLTAIYAD  170 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSC----------CCCTTCTTCCEEECC
T ss_pred             ccccccccc-hhhhccceeecccccccc-cccc----ccccccchhhcccccccc----------ccccccccceecccc
Confidence            999998885 688999999999886543 3332    235567777665443221          446778889999999


Q ss_pred             cCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCcc
Q 013440          219 VPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQ  298 (443)
Q Consensus       219 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  298 (443)
                      .+.....+...  ...+.+........   ..+....++.++.+.+..|.......   .    ..++..+.+..+....
T Consensus       171 ~n~~~~~~~~~--~~~~~l~~~~~~~~---~~~~~~~l~~L~~l~l~~n~~~~~~~---~----~~~l~~~~~~~~~~~~  238 (353)
T d1jl5a_         171 NNSLKKLPDLP--LSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTLPD---L----PPSLEALNVRDNYLTD  238 (353)
T ss_dssp             SSCCSSCCCCC--TTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSSCCS---C----CTTCCEEECCSSCCSC
T ss_pred             ccccccccccc--cccccccccccccc---cccccccccccccccccccccccccc---c----cccccccccccccccc
Confidence            88876655432  12222222111111   11223567788888888765432211   1    1445555555443322


Q ss_pred             ccccccccCCCCCCccEEEEeccc--Cceeeccc---------ccccccCccCcccceeccccccccccccccccccccc
Q 013440          299 SVVHELDDGEGFPRLKRLLVTDCS--EILHIVGS---------VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSF  367 (443)
Q Consensus       299 ~~~~~~~~~~~l~~L~~L~l~~~~--~l~~~~~~---------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  367 (443)
                      .. .      ..+.+....+..+.  .+..++..         ........+|+|++|++++| .+++++.       .+
T Consensus       239 ~~-~------~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-------~~  303 (353)
T d1jl5a_         239 LP-E------LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA-------LP  303 (353)
T ss_dssp             CC-C------CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC-------CC
T ss_pred             cc-c------ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCcccc-------cc
Confidence            11 0      11222222222110  00000000         00012234688999999886 5666643       37


Q ss_pred             cccceeeeccCcCcccccChhhhhcccccceeeeccCccccccccC
Q 013440          368 SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP  413 (443)
Q Consensus       368 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~  413 (443)
                      ++|+.|++++| +++++|.     .+++|++|++++|+ ++++|..
T Consensus       304 ~~L~~L~L~~N-~L~~l~~-----~~~~L~~L~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         304 PRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDI  342 (353)
T ss_dssp             TTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCC
T ss_pred             CCCCEEECCCC-cCCcccc-----ccCCCCEEECcCCc-CCCCCcc
Confidence            88999999765 6888763     24678999999986 8887643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.5e-17  Score=145.08  Aligned_cols=256  Identities=16%  Similarity=0.084  Sum_probs=130.0

Q ss_pred             EEEcCCCcccc-ccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCc
Q 013440           89 VLQFPGIGSSS-LPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCW  164 (443)
Q Consensus        89 ~L~l~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~  164 (443)
                      .+|++++.+.. ....+.. .....+.+....... +.......+|++|++++|.++  .++..+.++++|++|++++|.
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~   82 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR   82 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC
Confidence            67777765531 1111111 123444444444333 233334556777777777655  344456667777777777765


Q ss_pred             cccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCC
Q 013440          165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDG  244 (443)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~  244 (443)
                      ..+..+.. +.++++|++|++++|......      +....+..+++|++|+++++..                      
T Consensus        83 l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~------~l~~l~~~~~~L~~L~ls~c~~----------------------  133 (284)
T d2astb2          83 LSDPIVNT-LAKNSNLVRLNLSGCSGFSEF------ALQTLLSSCSRLDELNLSWCFD----------------------  133 (284)
T ss_dssp             CCHHHHHH-HTTCTTCSEEECTTCBSCCHH------HHHHHHHHCTTCCEEECCCCTT----------------------
T ss_pred             CCcHHHHH-HhcCCCCcCcccccccccccc------ccchhhHHHHhccccccccccc----------------------
Confidence            44444443 556666777766664321110      1112233455555555553321                      


Q ss_pred             CCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccC-CccccccccccCCCCCCccEEEEecccC
Q 013440          245 PEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE-GVQSVVHELDDGEGFPRLKRLLVTDCSE  323 (443)
Q Consensus       245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~  323 (443)
                                               .........+....++|+.|+++++. .+.+...... ...+|+|++|++++|..
T Consensus       134 -------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         134 -------------------------FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             -------------------------CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTT
T ss_pred             -------------------------cccccchhhhcccccccchhhhccccccccccccccc-ccccccccccccccccC
Confidence                                     11101111122222455555555442 2221111100 12567788888877776


Q ss_pred             ceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeecc
Q 013440          324 ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED  403 (443)
Q Consensus       324 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~  403 (443)
                      +++-    .......+|.|++|++++|..+++-....   ...+|+|++|++++|  +++.........+|.|+   + +
T Consensus       188 itd~----~~~~l~~~~~L~~L~L~~C~~i~~~~l~~---L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~---i-~  254 (284)
T d2astb2         188 LKND----CFQEFFQLNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---I-N  254 (284)
T ss_dssp             CCGG----GGGGGGGCTTCCEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---E-S
T ss_pred             CCch----hhhhhcccCcCCEEECCCCCCCChHHHHH---HhcCCCCCEEeeeCC--CCHHHHHHHHHhCcccc---c-c
Confidence            6532    12344567788888888887766543322   345788888888887  44443334445566654   3 5


Q ss_pred             CccccccccC
Q 013440          404 CDDLKMIIGP  413 (443)
Q Consensus       404 C~~l~~~~~~  413 (443)
                      |..++.+...
T Consensus       255 ~~~ls~~~~~  264 (284)
T d2astb2         255 CSHFTTIARP  264 (284)
T ss_dssp             CCCSCCTTCS
T ss_pred             CccCCCCCCC
Confidence            6666665433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.6e-15  Score=127.14  Aligned_cols=176  Identities=19%  Similarity=0.231  Sum_probs=137.1

Q ss_pred             eCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC
Q 013440           43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD  122 (443)
Q Consensus        43 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~  122 (443)
                      .+..+.+........+++++.|+++++..  ..+..  ++.+++|++|++++|.++.++. ++.+++|++|++++|.+..
T Consensus        24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i--~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          24 VLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HhCCCCCCCccCHHHhcCCCEEECCCCCC--CCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccccc
Confidence            34445554444444678999999999985  45543  4789999999999999988765 8899999999999999877


Q ss_pred             cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchh
Q 013440          123 IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS  202 (443)
Q Consensus       123 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  202 (443)
                      +..++++++|+.|+++++....++ .+.++++|+.|++++|.+ ..++.  +..+++|+.|++.+|.+...         
T Consensus        99 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~--l~~~~~L~~L~l~~n~l~~l---------  165 (199)
T d2omxa2          99 ITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI-SDISA--LSGLTSLQQLNFSSNQVTDL---------  165 (199)
T ss_dssp             CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC-CCCGG--GTTCTTCSEEECCSSCCCCC---------
T ss_pred             cccccccccccccccccccccccc-ccchhhhhHHhhhhhhhh-ccccc--ccccccccccccccccccCC---------
Confidence            667889999999999998777653 578899999999999654 44553  67899999999999876542         


Q ss_pred             hhhccCCCCCCEEEeecCCCCCCCCccccccCcEE
Q 013440          203 LVELERLTELTTLEIEVPDAEILPPDFVSVELQRY  237 (443)
Q Consensus       203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l  237 (443)
                       ..++++++|++|++++|.+..++.-..+++|+.|
T Consensus       166 -~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         166 -KPLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             -ccccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence             3478899999999999998877643244666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.8e-15  Score=132.87  Aligned_cols=170  Identities=19%  Similarity=0.193  Sum_probs=95.0

Q ss_pred             EeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCC-
Q 013440           42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE-  119 (443)
Q Consensus        42 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~-  119 (443)
                      +...+.+++.+|..+ .+.+++|++++|.+  ..++...|.+++.|++|+++++.+..++ ..+..+..++.+...... 
T Consensus        16 v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAVPVGI-PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSCCTTC-CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCccCCCC-CCCCCEEECcCCcC--CCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344555556665433 24567777777764  5556555566777777777777666543 334455666666554332 


Q ss_pred             CCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccccc
Q 013440          120 LAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE  196 (443)
Q Consensus       120 l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (443)
                      +..  +..++++++|++|++++|.+..++. .+..+++|+.+++++|.+ +.++...+..+++|++|++++|.+....+ 
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-  170 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPE-  170 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhcccccCcccccch-
Confidence            433  3555666666666666666554433 345566666666666433 34443335555666666666655543332 


Q ss_pred             CCCchhhhhccCCCCCCEEEeecCCCC
Q 013440          197 GGSNASLVELERLTELTTLEIEVPDAE  223 (443)
Q Consensus       197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (443)
                             ..+.++++|+.+.+.+|.+.
T Consensus       171 -------~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         171 -------RAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCC
T ss_pred             -------hhhccccccchhhhhhcccc
Confidence                   34455555555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=8.8e-15  Score=125.76  Aligned_cols=164  Identities=23%  Similarity=0.235  Sum_probs=127.3

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~  136 (443)
                      .+..|+.|+++++..  ..+..  +..+++|++|++++|.++.++. ++.+++|++|++++|.++.+..+.++++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i--~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCC--CCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccc
Confidence            567888999998875  44443  4789999999999999888764 678899999999999888866788899999999


Q ss_pred             cCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (443)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (443)
                      +++|.+..++ .+.++++++.+++++|.+. ..+.  +..+++|+.+++++|.+...          ..++.+++|++|+
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~-~~~~--~~~l~~L~~l~l~~n~l~~i----------~~l~~l~~L~~L~  184 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQISDI----------VPLAGLTKLQNLY  184 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCC----------GGGTTCTTCCEEE
T ss_pred             cccccccccc-ccccccccccccccccccc-cccc--cccccccccccccccccccc----------ccccCCCCCCEEE
Confidence            9998877664 5778889999998886543 3333  56788999999988876532          3477888999999


Q ss_pred             eecCCCCCCCCccccccCcEEEE
Q 013440          217 IEVPDAEILPPDFVSVELQRYKI  239 (443)
Q Consensus       217 l~~~~~~~~~~~~~~~~L~~l~l  239 (443)
                      +++|.++.++....+++|+.|++
T Consensus       185 Ls~N~i~~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         185 LSKNHISDLRALAGLKNLDVLEL  207 (210)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEEE
T ss_pred             CCCCCCCCChhhcCCCCCCEEEc
Confidence            99888877764334566666666

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.4e-15  Score=135.71  Aligned_cols=254  Identities=17%  Similarity=0.156  Sum_probs=150.2

Q ss_pred             cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC--c-ccccCCCCCCEEEcC
Q 013440           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--I-AAIGQLKKLEILSLA  138 (443)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~-~~~~~l~~L~~L~l~  138 (443)
                      +.++++++.. .......++.  ..+..+.++...+............|++|++++|.+..  + ..+.++++|++|+++
T Consensus         3 ~~lDLs~~~l-~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNL-HPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBC-CHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCC-CchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            5778887665 3333333432  24556676666555433334456789999999988765  3 556789999999999


Q ss_pred             CCCCC-CCchhhcCCCCCCEEeccCCccccccc-hHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc-CCCCCCEE
Q 013440          139 YSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIA-PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTL  215 (443)
Q Consensus       139 ~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L  215 (443)
                      +|.++ ..+..++++++|++|++++|...++.. ..+...+++|++|++++|......      .....+. ..++|+.|
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~------~~~~~~~~~~~~L~~L  153 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------HVQVAVAHVSETITQL  153 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------HHHHHHHHSCTTCCEE
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccc------cchhhhcccccccchh
Confidence            99877 456678889999999999986554322 233567899999999887532211      1112222 23455555


Q ss_pred             EeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccC
Q 013440          216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE  295 (443)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  295 (443)
                      ++.++..                                              ...... ...+...+++|++|++++|.
T Consensus       154 ~l~~~~~----------------------------------------------~i~~~~-l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         154 NLSGYRK----------------------------------------------NLQKSD-LSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             ECCSCGG----------------------------------------------GSCHHH-HHHHHHHCTTCSEEECTTCT
T ss_pred             hhccccc----------------------------------------------cccccc-cccccccccccccccccccc
Confidence            5442110                                              000000 11122233778888887776


Q ss_pred             CccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeee
Q 013440          296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINV  375 (443)
Q Consensus       296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i  375 (443)
                      .+.+.....  +..+++|++|++++|..+++-    .......+|+|+.|++++|  +.+-....+  ...+|+|   .+
T Consensus       187 ~itd~~~~~--l~~~~~L~~L~L~~C~~i~~~----~l~~L~~~~~L~~L~l~~~--~~d~~l~~l--~~~lp~L---~i  253 (284)
T d2astb2         187 MLKNDCFQE--FFQLNYLQHLSLSRCYDIIPE----TLLELGEIPTLKTLQVFGI--VPDGTLQLL--KEALPHL---QI  253 (284)
T ss_dssp             TCCGGGGGG--GGGCTTCCEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTS--SCTTCHHHH--HHHSTTS---EE
T ss_pred             CCCchhhhh--hcccCcCCEEECCCCCCCChH----HHHHHhcCCCCCEEeeeCC--CCHHHHHHH--HHhCccc---cc
Confidence            655432211  236888999999888776532    2234567888999988887  222211111  1234544   44


Q ss_pred             ccCcCccccc
Q 013440          376 DSCRKLKYLF  385 (443)
Q Consensus       376 ~~c~~l~~~~  385 (443)
                       +|..++++.
T Consensus       254 -~~~~ls~~~  262 (284)
T d2astb2         254 -NCSHFTTIA  262 (284)
T ss_dssp             -SCCCSCCTT
T ss_pred             -cCccCCCCC
Confidence             567777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.4e-14  Score=126.12  Aligned_cols=169  Identities=20%  Similarity=0.280  Sum_probs=120.6

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE  119 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~  119 (443)
                      ..+++....+.+......+.+|+.|++.+|..  ..+..  +..+++|++|++++|.++.+++ +..+++|+++++++|.
T Consensus        22 ~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i--~~l~~--l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHTTCSSTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC
T ss_pred             HHHHhCCCCcCCcCCHHHcCCcCEEECCCCCC--Ccchh--HhcCCCCcEeecCCceeecccc-cccccccccccccccc
Confidence            34445555554444444678888888888875  55543  4788888888888888877654 7788888888888888


Q ss_pred             CCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCC
Q 013440          120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGS  199 (443)
Q Consensus       120 l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  199 (443)
                      ++.+..+..+++|+.++++++....++ .+...+.++.+.+.++......+   +..+++|++|++.+|.....      
T Consensus        97 ~~~i~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~------  166 (227)
T d1h6ua2          97 LKNVSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL------  166 (227)
T ss_dssp             CSCCGGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC------
T ss_pred             ccccccccccccccccccccccccccc-hhccccchhhhhchhhhhchhhh---hccccccccccccccccccc------
Confidence            877777888888888888888766553 35667788888887755443322   56778888888887765432      


Q ss_pred             chhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440          200 NASLVELERLTELTTLEIEVPDAEILPP  227 (443)
Q Consensus       200 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (443)
                          ..++.+++|++|++++|.+..++.
T Consensus       167 ----~~l~~l~~L~~L~Ls~n~l~~l~~  190 (227)
T d1h6ua2         167 ----TPLANLSKLTTLKADDNKISDISP  190 (227)
T ss_dssp             ----GGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ----hhhcccccceecccCCCccCCChh
Confidence                336778888888888887766543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=3e-13  Score=105.24  Aligned_cols=99  Identities=20%  Similarity=0.234  Sum_probs=52.6

Q ss_pred             cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCC
Q 013440           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSN  141 (443)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~  141 (443)
                      |.|++++|..  ..++.  +.++.+|++|++++|.++.+|+.++.+++|++|++++|.++.++.++.+++|++|++++|+
T Consensus         1 R~L~Ls~n~l--~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCC--CCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence            3455555553  23332  3455555555555555555555555555555555555555554445555555555555555


Q ss_pred             CCCCch--hhcCCCCCCEEeccCCc
Q 013440          142 INQLPV--EIGQLTRLQLLDLSNCW  164 (443)
Q Consensus       142 ~~~lp~--~~~~l~~L~~L~l~~~~  164 (443)
                      ++.++.  .+..+++|+.|++++|+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc
Confidence            554432  34555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-13  Score=112.13  Aligned_cols=127  Identities=16%  Similarity=0.067  Sum_probs=69.9

Q ss_pred             CCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-c-ccccCCC
Q 013440           53 PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLK  130 (443)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~  130 (443)
                      +...++.++++|++++|.+  ..++. ++..+.+|++|++++|.++.++ .+..+++|++|++++|.+.. + ..+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I--~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCC--CccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccc
Confidence            3334555666666666664  44432 2355666666666666666553 35566666666666666655 2 2234566


Q ss_pred             CCCEEEcCCCCCCCCch--hhcCCCCCCEEeccCCccccccc---hHHhhcCCCCcEEE
Q 013440          131 KLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIA---PNVISKLSQLEELY  184 (443)
Q Consensus       131 ~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~  184 (443)
                      +|++|++++|.++.++.  .+..+++|+.|++.+|++. ..+   ..++..+++|+.|+
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            66666666666655442  3455666666666664432 222   12345555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=7.4e-13  Score=102.92  Aligned_cols=102  Identities=23%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             CEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccc
Q 013440           88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL  166 (443)
Q Consensus        88 ~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~  166 (443)
                      |+|++++|.++.++. ++.+.+|++|++++|.++. +..++.+++|++|++++|.++.+| ++.++++|+.|++++|.+.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            678888888887764 7888888888888888887 567888888888888888888775 4788888888888885543


Q ss_pred             cccc-hHHhhcCCCCcEEEccCCCCCc
Q 013440          167 EVIA-PNVISKLSQLEELYMGNGFSGW  192 (443)
Q Consensus       167 ~~~~-~~~l~~l~~L~~L~l~~~~~~~  192 (443)
                       .++ ...+..+++|+.+++++|.+..
T Consensus        79 -~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          79 -QSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             -SSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             -CCCCchhhcCCCCCCEEECCCCcCCc
Confidence             333 1236677888888888777644

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.6e-13  Score=110.92  Aligned_cols=127  Identities=15%  Similarity=0.136  Sum_probs=108.4

Q ss_pred             hhhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCC
Q 013440           31 MEETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLI  108 (443)
Q Consensus        31 ~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~  108 (443)
                      ++..++.++|.|++++|++..++... .+++|+.|++++|..  ..++.  +..+++|++|++++|.++.++.. +..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i--~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCC--CccCC--cccCcchhhhhcccccccCCCcccccccc
Confidence            34566778999999999999998764 789999999999986  55544  58899999999999999998765 46799


Q ss_pred             CCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCch----hhcCCCCCCEEecc
Q 013440          109 NLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDLS  161 (443)
Q Consensus       109 ~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l~  161 (443)
                      +|++|++++|.+..   +..+..+++|++|++++|.++..|.    .+..+++|+.|+-.
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            99999999999887   3567889999999999999987764    47889999999843

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=4.4e-13  Score=113.21  Aligned_cols=129  Identities=18%  Similarity=0.183  Sum_probs=107.7

Q ss_pred             eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (443)
Q Consensus        40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~  118 (443)
                      ++++.+++++..+|..+ .+.++.|++++|.+ ...++...|.++++|+.|++++|.+..+ +..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i-~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCC-cccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            46788888888888755 36899999999997 4456666678999999999999999875 467788999999999999


Q ss_pred             CCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccc
Q 013440          119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIA  170 (443)
Q Consensus       119 ~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~  170 (443)
                      .+..  +..+.++++|++|+|++|.++.+|.. +..+++|+++++++|+......
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            9988  46789999999999999999987665 7889999999999977655443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.1e-12  Score=110.19  Aligned_cols=12  Identities=8%  Similarity=-0.327  Sum_probs=5.9

Q ss_pred             ccCcccceeccc
Q 013440          338 VFPLLEALSLMF  349 (443)
Q Consensus       338 ~~~~L~~L~l~~  349 (443)
                      .+++|+.|++++
T Consensus       199 ~l~~L~~L~Ls~  210 (242)
T d1xwdc1         199 GASGPVILDISR  210 (242)
T ss_dssp             TSCCCSEEECTT
T ss_pred             CCCCCCEEECCC
Confidence            345555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2e-12  Score=113.41  Aligned_cols=85  Identities=12%  Similarity=0.155  Sum_probs=35.9

Q ss_pred             CCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCC-Ccccc-ccccccCCCCCcE
Q 013440           37 KDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSS-LPSSLGRLINLQT  112 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~-~p~~l~~l~~L~~  112 (443)
                      ++++.|+++++.+..++..  .++++|++|++++|.. ...++...|.++..++++.+.. +.+.. .+..+..+++|++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~-~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT-CCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccc-cceeeccccccccccccccccccccccccccccccccccccc
Confidence            3444455554444444432  2444555555544443 2223333334444444444332 22322 2233444445555


Q ss_pred             EEecCCCCCC
Q 013440          113 LCLDWCELAD  122 (443)
Q Consensus       113 L~l~~~~l~~  122 (443)
                      ++++++.+..
T Consensus       108 l~l~~~~l~~  117 (242)
T d1xwdc1         108 LLISNTGIKH  117 (242)
T ss_dssp             EEEESCCCCS
T ss_pred             cccchhhhcc
Confidence            5554444433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-13  Score=131.94  Aligned_cols=105  Identities=16%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             CCeEEeCCCCCCCCC--CC-cCCCCCCcEEEcccCCCCCccC---cHHHHhcCCCCCEEEcCCCcccc-----cccccc-
Q 013440           38 DPIAISLPHRDIQEL--PE-RLQCPNLQLFLLYTEGNGPMQV---SDHFFEGMEGLKVLQFPGIGSSS-----LPSSLG-  105 (443)
Q Consensus        38 ~l~~L~l~~~~~~~l--~~-~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-----~p~~l~-  105 (443)
                      +++.|+++++++...  .. ...++++++|++++|.. ...-   ....+..+++|++|++++|.++.     +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i-~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCC-CHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            467788887777432  12 22577788888888865 3211   12234677888888888887652     222222 


Q ss_pred             CCCCCcEEEecCCCCCC------cccccCCCCCCEEEcCCCCCC
Q 013440          106 RLINLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNIN  143 (443)
Q Consensus       106 ~l~~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~~~  143 (443)
                      ...+|++|++++|.+.+      ...+..+++|++|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23468888888887765      144667788888888887665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.8e-11  Score=103.11  Aligned_cols=123  Identities=20%  Similarity=0.251  Sum_probs=54.3

Q ss_pred             EEEcCCCccccccccccCCCCCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCc
Q 013440           89 VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCW  164 (443)
Q Consensus        89 ~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~  164 (443)
                      +++.+++.++.+|..+.  .++++|++++|.+..   ...++++++|+.|++++|.+..++ ..+..+++|+.|++++|.
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            34444444444443331  344444444444432   133344444555555444444332 224444455555554432


Q ss_pred             cccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC
Q 013440          165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (443)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (443)
                       +..++..+|..+++|++|++++|.+....+        ..+..+++|++|++.+|.+
T Consensus        90 -l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~--------~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMP--------GSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             -CCEECSSSSTTCTTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECTTCCB
T ss_pred             -ccccCHHHHhCCCcccccccCCccccccCH--------HHhcCCccccccccccccc
Confidence             223333334445555555555554444333        3344455555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=3.7e-13  Score=113.99  Aligned_cols=104  Identities=19%  Similarity=0.251  Sum_probs=55.3

Q ss_pred             CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEE
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~  136 (443)
                      .+++|+.|++++|..  ..++.  +.++++|++|++++|.++.+|.....+++|++|++++|.++.+..+..+++|++|+
T Consensus        46 ~L~~L~~L~Ls~n~I--~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          46 TLKACKHLALSTNNI--EKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCCEEECSEEEE--SCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             cccccceeECcccCC--CCccc--ccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            455555666655553  33332  34555566666665555555443344445555555555555544455555555555


Q ss_pred             cCCCCCCCCch--hhcCCCCCCEEeccCCc
Q 013440          137 LAYSNINQLPV--EIGQLTRLQLLDLSNCW  164 (443)
Q Consensus       137 l~~~~~~~lp~--~~~~l~~L~~L~l~~~~  164 (443)
                      +++|.++.++.  .+..+++|+.|++++|+
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccchhccccccccccCCCccceeecCCCc
Confidence            55555554432  34555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=1e-12  Score=111.24  Aligned_cols=152  Identities=20%  Similarity=0.214  Sum_probs=103.7

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCc-ccccCCCCCCEEEcCC
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAY  139 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~  139 (443)
                      ++.+.+++.......++.++ ..+.+|++|++++|.++.++ .+..+++|++|++++|.+..+ .....+++|++|++++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl-~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHH-HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHH-hcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            34445544321134455554 78999999999999998885 588899999999999988773 3344467899999999


Q ss_pred             CCCCCCchhhcCCCCCCEEeccCCccccccch-HHhhcCCCCcEEEccCCCCCcccccCCCch--hhhhccCCCCCCEEE
Q 013440          140 SNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNA--SLVELERLTELTTLE  216 (443)
Q Consensus       140 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~l~~l~~L~~L~  216 (443)
                      |.++.++ .+.++++|+.|++++|.+ ..++. ..+..+++|+.|++++|++...........  ....+..+++|+.|+
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccc-cccccccccccccccchh-ccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9888764 577888999999988654 33332 237788899999998887654433211110  011256677887765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.99  E-value=1.1e-10  Score=107.81  Aligned_cols=115  Identities=14%  Similarity=0.038  Sum_probs=55.0

Q ss_pred             cCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCCC-----Cch---------hhcCCCCCCEEeccCCc
Q 013440          105 GRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ-----LPV---------EIGQLTRLQLLDLSNCW  164 (443)
Q Consensus       105 ~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~~-----lp~---------~~~~l~~L~~L~l~~~~  164 (443)
                      ..+++|++|++++|.+..  .    ..+..+++|++|++++|.++.     +..         .....+.|+.+.+.++.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            345556666666665443  1    223345566666666655430     000         11235556666666543


Q ss_pred             cccccc---hHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC
Q 013440          165 WLEVIA---PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (443)
Q Consensus       165 ~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (443)
                      +.....   ...+..++.|+.|+++.|.+.....   .......+..+++|+.|++++|.+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~---~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI---EHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH---HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccchhhhhhhhccccccccccccccc---ccchhhhhcchhhhcccccccccc
Confidence            322111   1124455666666666665543211   000112355566666777666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=6.4e-11  Score=113.39  Aligned_cols=186  Identities=18%  Similarity=0.147  Sum_probs=104.6

Q ss_pred             ccCCCCeEEeCCCCCCCC-----CCCc-CCCCCCcEEEcccCCCCCccCcHHHHh----cCCCCCEEEcCCCcccc----
Q 013440           34 TIQKDPIAISLPHRDIQE-----LPER-LQCPNLQLFLLYTEGNGPMQVSDHFFE----GMEGLKVLQFPGIGSSS----   99 (443)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~----   99 (443)
                      ..+++++.|.+.+|.++.     +... ..+++|+.|++++|.. .+.-...++.    ....|++|++++|.++.    
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC-ChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            445778888888887742     1122 2678888888888875 2211112222    23578888888888764    


Q ss_pred             -ccccccCCCCCcEEEecCCCCCC--c----cc-----------------------------ccCCCCCCEEEcCCCCCC
Q 013440          100 -LPSSLGRLINLQTLCLDWCELAD--I----AA-----------------------------IGQLKKLEILSLAYSNIN  143 (443)
Q Consensus       100 -~p~~l~~l~~L~~L~l~~~~l~~--~----~~-----------------------------~~~l~~L~~L~l~~~~~~  143 (443)
                       ++..+..+++|++|++++|.+.+  +    ..                             +.....++.++++++...
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~  182 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  182 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccc
Confidence             45566778888888888877543  1    11                             112344555555555333


Q ss_pred             C--C---chhh-cCCCCCCEEeccCCccccccc---hHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCE
Q 013440          144 Q--L---PVEI-GQLTRLQLLDLSNCWWLEVIA---PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTT  214 (443)
Q Consensus       144 ~--l---p~~~-~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  214 (443)
                      .  +   ...+ ..-.....+.+..+.......   ...+.....++.+.+..+.......   .............++.
T Consensus       183 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~---~~~~~~~~~~~~~l~~  259 (460)
T d1z7xw1         183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM---AELCPGLLHPSSRLRT  259 (460)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH---HHHHHHHTSTTCCCCE
T ss_pred             cccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccccc---chhhcccccccccccc
Confidence            0  0   0111 122344556665543322111   1124567788999988876533211   0011133455678999


Q ss_pred             EEeecCCCC
Q 013440          215 LEIEVPDAE  223 (443)
Q Consensus       215 L~l~~~~~~  223 (443)
                      +++++|.+.
T Consensus       260 l~l~~n~i~  268 (460)
T d1z7xw1         260 LWIWECGIT  268 (460)
T ss_dssp             EECTTSCCC
T ss_pred             ccccccccc
Confidence            999988764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.6e-09  Score=85.16  Aligned_cols=103  Identities=22%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCC-cccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (443)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~  136 (443)
                      ...++..++..  ...|..+ .++++|++|++.++ .++.++ ..|.++++|++|++++|.++.  +..+..+++|++|+
T Consensus        10 ~~~l~c~~~~~--~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGA--LDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCC--CTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCC--ccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            33455554443  3334332 55667777777554 366554 346667777777777777766  35577777778888


Q ss_pred             cCCCCCCCCchhhcCCCCCCEEeccCCccc
Q 013440          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWL  166 (443)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~  166 (443)
                      |++|+++.+|..+....+|+.|++++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            888877777776665567888888877653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.1e-08  Score=82.27  Aligned_cols=106  Identities=14%  Similarity=0.101  Sum_probs=84.5

Q ss_pred             CCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEE
Q 013440           37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLC  114 (443)
Q Consensus        37 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~  114 (443)
                      .....+...++.....+... .+++|+.|++.++.. ...++...|.++++|+.|++++|.++.++ ..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCcc-ccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34455777777775555444 789999999987754 57777777899999999999999999874 6689999999999


Q ss_pred             ecCCCCCC-cccccCCCCCCEEEcCCCCCC
Q 013440          115 LDWCELAD-IAAIGQLKKLEILSLAYSNIN  143 (443)
Q Consensus       115 l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~  143 (443)
                      +++|.+.. +..+....+|+.|++++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            99999988 444444457999999999774

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.81  E-value=2.4e-09  Score=98.50  Aligned_cols=207  Identities=15%  Similarity=0.158  Sum_probs=139.4

Q ss_pred             hccCCCCeEEeCCCCCCCCCC------------CcCCCCCCcEEEcccCCCCCccC---cHHHHhcCCCCCEEEcCCCcc
Q 013440           33 ETIQKDPIAISLPHRDIQELP------------ERLQCPNLQLFLLYTEGNGPMQV---SDHFFEGMEGLKVLQFPGIGS   97 (443)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~l~------------~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~   97 (443)
                      ....+.++.+.+.++......            ....+++|+.|++++|.. ...-   ....+..++.|++|++++|.+
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC-CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc-ccccccchhhhhcccccchheecccccc
Confidence            456688999999877653221            122678999999999976 2221   122345789999999999976


Q ss_pred             cc-----ccc---------cccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCCC------CchhhcC
Q 013440           98 SS-----LPS---------SLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ------LPVEIGQ  151 (443)
Q Consensus        98 ~~-----~p~---------~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~~------lp~~~~~  151 (443)
                      ..     +..         .....+.|+.+.++++.+.+  .    ..+..+..|+.|++++|.++.      +...+..
T Consensus       134 ~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~  213 (344)
T d2ca6a1         134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  213 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             cccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcc
Confidence            42     111         12356789999999988765  2    445678899999999998872      3345678


Q ss_pred             CCCCCEEeccCCccccc----cchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccC--CCCCCEEEeecCCCCC-
Q 013440          152 LTRLQLLDLSNCWWLEV----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER--LTELTTLEIEVPDAEI-  224 (443)
Q Consensus       152 l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~-  224 (443)
                      +++|+.|++++|.+...    +.. .+..+++|++|++++|.+.....    ......+..  .+.|++|++++|.+.. 
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~-~l~~~~~L~~L~Ls~n~i~~~g~----~~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGA----AAVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHH----HHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             hhhhcccccccccccccccccccc-cccccccchhhhhhcCccCchhh----HHHHHHhhhccCCCCCEEECCCCcCChH
Confidence            89999999999765433    222 36788899999999998765432    122233433  3579999999998743 


Q ss_pred             ----CCCcc--ccccCcEEEEEecCCC
Q 013440          225 ----LPPDF--VSVELQRYKIRIGDGP  245 (443)
Q Consensus       225 ----~~~~~--~~~~L~~l~l~~~~~~  245 (443)
                          +...+  ..++|+.+++..+...
T Consensus       289 ~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         289 AVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHHHHccCCCCCEEECCCCcCC
Confidence                22222  2367898888554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=9.6e-07  Score=71.04  Aligned_cols=43  Identities=26%  Similarity=0.192  Sum_probs=23.7

Q ss_pred             HHhcCCCCCEEEcCCCccccc---cccccCCCCCcEEEecCCCCCC
Q 013440           80 FFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLDWCELAD  122 (443)
Q Consensus        80 ~~~~l~~L~~L~l~~~~~~~~---p~~l~~l~~L~~L~l~~~~l~~  122 (443)
                      ++.+++.|++|++++|.++.+   +..+..+++|++|++++|.+++
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence            345566666666666666543   2334445555555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.2e-06  Score=67.12  Aligned_cols=85  Identities=16%  Similarity=0.107  Sum_probs=64.8

Q ss_pred             ccccccCCCCCcEEEecCCCCCCc----ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccc----
Q 013440          100 LPSSLGRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIA----  170 (443)
Q Consensus       100 ~p~~l~~l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~----  170 (443)
                      ++.....+++|++|++++|.++.+    ..+.++++|+.|++++|.++.++.. ..+..+|+.|++.+|++.....    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            333345789999999999998873    3456799999999999999987652 3455679999999987665432    


Q ss_pred             --hHHhhcCCCCcEEE
Q 013440          171 --PNVISKLSQLEELY  184 (443)
Q Consensus       171 --~~~l~~l~~L~~L~  184 (443)
                        ..++..+++|+.|+
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence              23467789999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.47  E-value=5.8e-05  Score=60.51  Aligned_cols=59  Identities=8%  Similarity=0.020  Sum_probs=28.3

Q ss_pred             hcCCCCCEEEcCCCcccc-----ccccccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCC
Q 013440           82 EGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYS  140 (443)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~  140 (443)
                      ...+.|++|++++|.+..     +...+...+.|++|++++|.+.+  .    ..+...++|++|+++++
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            344555666665555432     22333444555555555555443  1    33344444555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=0.00016  Score=57.78  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=65.5

Q ss_pred             HHHhcCCCCCEEEcCCC-cccc-----ccccccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC---
Q 013440           79 HFFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN---  143 (443)
Q Consensus        79 ~~~~~l~~L~~L~l~~~-~~~~-----~p~~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~---  143 (443)
                      .+..+.+.|+.|+++++ .++.     +...+...++|++|++++|.+.+  .    ..+...+.|++|++++|.++   
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence            34455677888888764 3432     33456667788888888887765  2    34455677888888888776   


Q ss_pred             --CCchhhcCCCCCCEEeccCCcccc---c----cchHHhhcCCCCcEEEccCC
Q 013440          144 --QLPVEIGQLTRLQLLDLSNCWWLE---V----IAPNVISKLSQLEELYMGNG  188 (443)
Q Consensus       144 --~lp~~~~~l~~L~~L~l~~~~~~~---~----~~~~~l~~l~~L~~L~l~~~  188 (443)
                        .+-..+...++|++|++.++....   .    +.. .+...++|+.|+++.+
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~-~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHH-HHHhCCCccEeeCcCC
Confidence              233345666777777776643211   0    111 2444566666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.12  E-value=0.00024  Score=56.62  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=37.3

Q ss_pred             hcCCCCCEEEcCCC-cccc-----ccccccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC-----C
Q 013440           82 EGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----Q  144 (443)
Q Consensus        82 ~~l~~L~~L~l~~~-~~~~-----~p~~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~-----~  144 (443)
                      .+.+.|++|+++++ .++.     +...+...++|++|++++|.+.+  .    ..+.....++.+++++|.++     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44455555555542 2321     22334445555555555555443  1    23344455555555555544     2


Q ss_pred             CchhhcCCCCCCEEec
Q 013440          145 LPVEIGQLTRLQLLDL  160 (443)
Q Consensus       145 lp~~~~~l~~L~~L~l  160 (443)
                      +...+...++|+.+++
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            2234445555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.05  E-value=0.00049  Score=54.74  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=69.7

Q ss_pred             CCCCCcEEEcccCCCCCccCcH---HHHhcCCCCCEEEcCCCcccc-----ccccccCCCCCcEEEecCCCCCC------
Q 013440           57 QCPNLQLFLLYTEGNGPMQVSD---HFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD------  122 (443)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~l~~~~l~~------  122 (443)
                      +.+.|+.|+++++.........   ..+...++|+.|++++|.++.     +...+.....++.+++++|.+.+      
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4577778888764321222221   223577889999999888753     44556677889999999888765      


Q ss_pred             cccccCCCCCCEEEcCC--CCCC-----CCchhhcCCCCCCEEeccCC
Q 013440          123 IAAIGQLKKLEILSLAY--SNIN-----QLPVEIGQLTRLQLLDLSNC  163 (443)
Q Consensus       123 ~~~~~~l~~L~~L~l~~--~~~~-----~lp~~~~~l~~L~~L~l~~~  163 (443)
                      ...+...++|+.++|..  +.+.     .+...+...++|+.|++..+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            26667788888877754  3454     24445556777777777653