Citrus Sinensis ID: 013451
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| 224139884 | 444 | predicted protein [Populus trichocarpa] | 0.966 | 0.961 | 0.770 | 0.0 | |
| 255585488 | 533 | glycosyltransferase, putative [Ricinus c | 0.961 | 0.797 | 0.736 | 0.0 | |
| 356504769 | 537 | PREDICTED: uncharacterized glycosyltrans | 0.963 | 0.793 | 0.741 | 0.0 | |
| 317106706 | 530 | JHL06B08.8 [Jatropha curcas] | 0.963 | 0.803 | 0.743 | 0.0 | |
| 224086964 | 413 | predicted protein [Populus trichocarpa] | 0.925 | 0.990 | 0.782 | 0.0 | |
| 356572020 | 530 | PREDICTED: uncharacterized glycosyltrans | 0.963 | 0.803 | 0.738 | 0.0 | |
| 357509679 | 541 | Glycosyltransferase [Medicago truncatula | 0.963 | 0.787 | 0.705 | 0.0 | |
| 56409840 | 541 | glycosyltransferase [Medicago truncatula | 0.963 | 0.787 | 0.703 | 0.0 | |
| 225441880 | 529 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.810 | 0.702 | 1e-174 | |
| 297739632 | 486 | unnamed protein product [Vitis vinifera] | 0.900 | 0.818 | 0.692 | 1e-168 |
| >gi|224139884|ref|XP_002323324.1| predicted protein [Populus trichocarpa] gi|222867954|gb|EEF05085.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/432 (77%), Positives = 382/432 (88%), Gaps = 5/432 (1%)
Query: 14 TICCDRSGIRTDVCIMKGDVRTNSASSSIFLY--KNTNGFINYVSSMVE-EKELQHEKIR 70
TICCDRS +R+DVC+MKGDVRT+SASSSIFL+ +N N +N VSS+V+ ++EL HEKI+
Sbjct: 15 TICCDRSSMRSDVCVMKGDVRTHSASSSIFLFTSRNNNSVMNKVSSLVDKDEELHHEKIK 74
Query: 71 PYTRKWETSVMDTIDELDLVVKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGI 130
PYTRKWETSVMD+IDEL L+ K EN NHHCDV+HDVPAVFFSTGGYTGNVYHEFNDGI
Sbjct: 75 PYTRKWETSVMDSIDELGLIAKTENSRINHHCDVMHDVPAVFFSTGGYTGNVYHEFNDGI 134
Query: 131 LPLYITSQHLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCFPEAIVGL 190
LPLYITSQH KKKVVFVIL+YHNWWIMKYG+ILS LSDYP IDFSGDK+THCFPEAI GL
Sbjct: 135 LPLYITSQHFKKKVVFVILDYHNWWIMKYGNILSLLSDYPAIDFSGDKKTHCFPEAIAGL 194
Query: 191 RIHDELTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFK 250
RIHDELTVDPSLM+ NK+ +DFRN LD+AYWPRI+ +I+ EER A++KL L S S K
Sbjct: 195 RIHDELTVDPSLMQENKSIVDFRNFLDRAYWPRIKSMIKGEERGAQKKLELKAHS--SKK 252
Query: 251 NVKEVQGDQSKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRA 310
N+K+V KKPKLVILSRNGSRAITNEN LVKMAE+IGF+V+V+RP+ T+ELA+IYRA
Sbjct: 253 NLKQVHEATLKKPKLVILSRNGSRAITNENLLVKMAEEIGFRVEVMRPEPTTELARIYRA 312
Query: 311 LNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYTIL 370
LNSS+VM+GVHGAAMTHFLFMKPGSVFIQVIPLGT+WAA+ YYGEPARKLGLKYIGY IL
Sbjct: 313 LNSSEVMIGVHGAAMTHFLFMKPGSVFIQVIPLGTEWAADAYYGEPARKLGLKYIGYQIL 372
Query: 371 PRESSLYDQYDKNDPVLRDPSSVNEKGWQYTKTIYLDGQNVRLNLRRFQKRLVRAYDYSI 430
PRESSLYD+YDKNDPVLRDP SV++KGWQYTK+IYLD QNVRLNL RFQ+RL+RAY YSI
Sbjct: 373 PRESSLYDKYDKNDPVLRDPRSVSDKGWQYTKSIYLDNQNVRLNLGRFQRRLLRAYRYSI 432
Query: 431 NRISQNCHHQSQ 442
+++ H QSQ
Sbjct: 433 AKVNSRYHLQSQ 444
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585488|ref|XP_002533436.1| glycosyltransferase, putative [Ricinus communis] gi|223526710|gb|EEF28943.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356504769|ref|XP_003521167.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|317106706|dbj|BAJ53206.1| JHL06B08.8 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
| >gi|224086964|ref|XP_002308019.1| predicted protein [Populus trichocarpa] gi|222853995|gb|EEE91542.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356572020|ref|XP_003554168.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357509679|ref|XP_003625128.1| Glycosyltransferase [Medicago truncatula] gi|355500143|gb|AES81346.1| Glycosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|56409840|emb|CAI30145.1| glycosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|225441880|ref|XP_002284307.1| PREDICTED: uncharacterized protein LOC100245312 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297739632|emb|CBI29814.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| TAIR|locus:2062709 | 500 | AT2G41640 [Arabidopsis thalian | 0.477 | 0.422 | 0.663 | 1.9e-151 | |
| TAIR|locus:2082598 | 504 | AT3G57380 [Arabidopsis thalian | 0.486 | 0.426 | 0.681 | 1.4e-150 | |
| TAIR|locus:2076274 | 494 | AT3G10320 [Arabidopsis thalian | 0.819 | 0.732 | 0.638 | 2.6e-127 | |
| TAIR|locus:2063793 | 452 | AT2G03370 [Arabidopsis thalian | 0.380 | 0.371 | 0.438 | 1.2e-71 | |
| TAIR|locus:2063809 | 455 | AT2G03360 [Arabidopsis thalian | 0.373 | 0.362 | 0.416 | 6.8e-71 | |
| TAIR|locus:2092757 | 384 | AT3G18170 [Arabidopsis thalian | 0.373 | 0.429 | 0.380 | 6.1e-58 | |
| TAIR|locus:2092762 | 470 | AT3G18180 [Arabidopsis thalian | 0.384 | 0.361 | 0.375 | 1e-29 | |
| UNIPROTKB|F1SFQ3 | 527 | EOGT "Uncharacterized protein" | 0.305 | 0.256 | 0.288 | 1.7e-11 | |
| UNIPROTKB|Q5NDL9 | 527 | EOGT "EGF domain-specific O-li | 0.332 | 0.278 | 0.25 | 4.7e-10 | |
| WB|WBGene00010386 | 523 | H12D21.10 [Caenorhabditis eleg | 0.375 | 0.317 | 0.247 | 1.7e-07 |
| TAIR|locus:2062709 AT2G41640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 1.9e-151, Sum P(2) = 1.9e-151
Identities = 148/223 (66%), Positives = 180/223 (80%)
Query: 13 GTICCDRSGIRTDVCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPY 72
GTICCDR+G+R+D+C+MKGDVRTNSASSSIFL+ ++ + EKI+PY
Sbjct: 97 GTICCDRTGLRSDICVMKGDVRTNSASSSIFLFTSSTN-----------NNTKPEKIKPY 145
Query: 73 TRKWETSVMDTIDELDLVVKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGILP 132
TRKWETSVMDT+ EL+L+ K N++++ CDV HDVPAVFFSTGGYTGNVYHEFNDGI+P
Sbjct: 146 TRKWETSVMDTVQELNLITKDSNKSSDRVCDVYHDVPAVFFSTGGYTGNVYHEFNDGIIP 205
Query: 133 LYITSQHLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCFPEAIVGLRI 192
L+ITSQH KKVVFVI+EYH+WW MKYGD++S+LSDYP +DF+GD RTHCF EA VGLRI
Sbjct: 206 LFITSQHYNKKVVFVIVEYHDWWEMKYGDVVSQLSDYPLVDFNGDTRTHCFKEATVGLRI 265
Query: 193 HDELTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREA 235
HDELTV+ SL+ GN+ +DFRNVLD+ Y RI+ L Q EE EA
Sbjct: 266 HDELTVNSSLVIGNQTIVDFRNVLDRGYSHRIQSLTQ-EETEA 307
|
|
| TAIR|locus:2082598 AT3G57380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076274 AT3G10320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063793 AT2G03370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063809 AT2G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092757 AT3G18170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092762 AT3G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SFQ3 EOGT "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDL9 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00010386 H12D21.10 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 8e-16 | |
| COG4421 | 368 | COG4421, COG4421, Capsular polysaccharide biosynth | 3e-04 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-16
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 260 SKKPKLVILSR--NGSRAITNENSLVKMAEDIGFQVQVVRPDRTS--ELAKIYRALNSSD 315
KP+ V +SR G R I NE+ L + GF++ V P+ S E K++ S+
Sbjct: 99 KIKPRKVYISRKKAGRRRILNEDELEEALPKYGFEI--VDPETLSLEEQVKLFS---SAK 153
Query: 316 VMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYT 368
V+VG HG+A+T+ +FM PG+ ++++P + + A LGL Y
Sbjct: 154 VIVGPHGSALTNLIFMPPGTGVVELVPPNR---LDPSFRNLAALLGLDYYYVY 203
|
Family of uncharacterized proteins. Length = 206 |
| >gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| KOG4698 | 475 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.96 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.74 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 86.35 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 86.18 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.27 |
| >KOG4698 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-80 Score=630.48 Aligned_cols=386 Identities=49% Similarity=0.819 Sum_probs=356.1
Q ss_pred CCCceeecCCCCCcceeEEeCcEEeeCCCceEEEEecCCCcccccccchhhcccccccccCCCCCCcccccCccceeEEE
Q 013451 11 FTGTICCDRSGIRTDVCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDELDLV 90 (442)
Q Consensus 11 ~~~~~~Cd~s~~r~d~C~~~gdvr~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~i~py~Rk~~~~~m~~v~e~~v~ 90 (442)
.++.++||+++.++|+|+++||+|+|+.++|+++...... ++..+.+|+||||+||||.++|+.|+|++|.
T Consensus 82 e~~~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~---------~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~ 152 (475)
T KOG4698|consen 82 EDSSFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLL---------TFSGRLVEKIKPYTRKGETWVMPEVRELNLL 152 (475)
T ss_pred CCceEEeeccccccchhhhcCccccCcchhhhhhhccchh---------hhccccchhcccccccccccccccccccceE
Confidence 4556999999999999999999999999999987765311 1234688999999999999999999999998
Q ss_pred EecCCCcCCCCCceEeeccEEEEEeCCcccCchhhhhhchhhHHhhhh--hcCCeEEEEEecccchhhhhHHHHHHhhCC
Q 013451 91 VKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQ--HLKKKVVFVILEYHNWWIMKYGDILSRLSD 168 (442)
Q Consensus 91 ~~~~~~~~~~~C~~~h~~Pavvfs~~gy~~N~~H~~~D~liPlf~t~~--~~~~~v~~vi~d~~~ww~~ky~~ll~~lS~ 168 (442)
.. ..+...+|+++|++||+||++|||+||.||+|+|+++|||+|.+ .|+++|++++++.++||..||.+++++||+
T Consensus 153 ~~--~~~~~r~c~v~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn 230 (475)
T KOG4698|consen 153 VR--PGSEIRRCDVNHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSN 230 (475)
T ss_pred Ec--CCcccceeeeecccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCC
Confidence 32 25667899999999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred CCccccCCCCcceecceeEEecccccccccCCCCCCCC--ccHHHHHHHHHHhcCccccccchhHHHHHHhhhcCCCCCC
Q 013451 169 YPPIDFSGDKRTHCFPEAIVGLRIHDELTVDPSLMRGN--KNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSD 246 (442)
Q Consensus 169 ~~iidl~~d~~~~CF~~aiVGl~~h~~l~idp~~~~~~--~s~~dF~~flr~ay~~~~~~l~~~~~~~~~~rl~~~~s~~ 246 (442)
|++++++++..+|||.+++|||..|.++++||...+++ ++|.+|++||+.+|++++.. . ++|
T Consensus 231 ~~~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~------------~--~~t-- 294 (475)
T KOG4698|consen 231 YPVVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPE------------A--NVT-- 294 (475)
T ss_pred CceEEecCCceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccc------------c--ccC--
Confidence 99999999999999999999999999999999988865 89999999999999887521 0 121
Q ss_pred CCCCccccccCCCCCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 013451 247 PSFKNVKEVQGDQSKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT 326 (442)
Q Consensus 247 p~~~~~~~~~~~~~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLt 326 (442)
...+.++||+++++|.++|.|+||+||.+++++.||+|.++++++ +++.+|+++.+++|||+|+||||||
T Consensus 295 ---------~~~~~kkpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lt 364 (475)
T KOG4698|consen 295 ---------APEPWKKPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLT 364 (475)
T ss_pred ---------CcChhhCCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccce
Confidence 233556899999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred hhhccCCCcEEEEEeeCC-CCcccccchHhHHhhcCCcEEEEEeccCCCccccccCCCCCccCCCCcccccCccccc-ee
Q 013451 327 HFLFMKPGSVFIQVIPLG-TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTK-TI 404 (442)
Q Consensus 327 N~lFm~pgs~vIEI~P~g-~~~~~~~~y~~~A~~~Gl~Y~~y~i~~~Essl~~~y~~~~~v~~dP~~~~~~gw~~~~-~~ 404 (442)
|++|+||++.+|||.|+| .+|.+..+|..+|+.|+++|.+|+|.++||+|.++|++||+++.||.+..++||+.++ .+
T Consensus 365 h~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~ 444 (475)
T KOG4698|consen 365 HLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKV 444 (475)
T ss_pred eEEecCCcceEEEEEECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeee
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999987 89
Q ss_pred ecCCCceEEehHHHHHHHHHHHHHHHHhh
Q 013451 405 YLDGQNVRLNLRRFQKRLVRAYDYSINRI 433 (442)
Q Consensus 405 yl~~Qdv~vDi~rF~~~L~~al~~~~~~~ 433 (442)
||..|+|++|+.||++.+.+|+...+.++
T Consensus 445 yl~~q~v~ld~nRf~~~~~~a~~~~~~~~ 473 (475)
T KOG4698|consen 445 YLELQAVRLDINRFRKTLVKAYLKEITQL 473 (475)
T ss_pred eEeEeeeehhhhhcccchhHHHHHHHHhh
Confidence 99999999999999999999999988764
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 76/483 (15%), Positives = 151/483 (31%), Gaps = 130/483 (26%)
Query: 76 WETSVMDTIDELDLV-VKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFND--GILP 132
+ET + D++ V ++ N C V D+P S ++ + G L
Sbjct: 9 FETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLR 66
Query: 133 LYITSQHLKKKVV--FV--ILEYHNWWIM---------------KYGDILSRLSDYPPID 173
L+ T ++++V FV +L + ++M Y + RL + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV- 125
Query: 174 FSGDKRTHCFPEAIVGLRIH-DELTVDPSL----MRGN-K-----NAIDFRNVL----DQ 218
F+ K + + LR EL ++ + G+ K + V +
Sbjct: 126 FA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 219 AYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVILSRNG--SRAI 276
+W + E L DP++ + + D S KL I S R +
Sbjct: 184 IFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTS----RSDHSSNIKLRIHSIQAELRRLL 238
Query: 277 TNE---NSL-----VKMAEDI---GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAM 325
++ N L V+ A+ +++ R ++ A ++ + + H +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 326 THF----LFMK---------PGSVFIQVIPLGTDWAAETYYGEPAR-------------- 358
T L +K P V + P AE+ A
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 359 --KLGLK----------YIGYTILPRE--------SSLYDQYDKNDPV-----LRDPSSV 393
+ L + ++ P S ++ K+D + L S V
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 394 NEKGWQYTKTI---YLDGQNVRLNLRRFQKRLVRAYD----YSINRISQNC--------- 437
++ + T +I YL+ + N + +V Y+ + + +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 438 -HH 439
HH
Sbjct: 478 GHH 480
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 82.94 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 81.04 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 80.65 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 80.13 |
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=82.94 E-value=2.8 Score=40.90 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=54.8
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
..-++++|.|.+. | -+..+|...|.+|.+..-. +.++.+ .+++|||+|+.-|+. +-..=|.+||++|
T Consensus 160 ~Gk~vvVvGrs~iVG~------plA~lL~~~gAtVtv~hs~-T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGR------PMALELLLGGCTVTVTHRF-TRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIV 229 (286)
T ss_dssp TTCEEEEECTTSTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-CcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEE
Confidence 4558899999863 4 4667788889999988643 456654 578999999998875 6666678999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|-+-
T Consensus 230 IDvg 233 (286)
T 4a5o_A 230 IDVG 233 (286)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| d2bona1 | 295 | Lipid kinase YegS {Escherichia coli [TaxId: 562]} | 82.61 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 80.61 |
| >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: Diacylglycerol kinase-like domain: Lipid kinase YegS species: Escherichia coli [TaxId: 562]
Probab=82.61 E-value=2.3 Score=38.23 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=53.1
Q ss_pred CEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEeechhhhh----hhhccCCC--
Q 013451 263 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMT----HFLFMKPG-- 334 (442)
Q Consensus 263 prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~--~~adVlVGvHGAgLt----N~lFm~pg-- 334 (442)
||.++|--.+++.=....++++.|++.|+++.+...+......+.++-+ ...|++|.+=|=|-- |.++-..+
T Consensus 1 p~~l~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~~~~~~ 80 (295)
T d2bona1 1 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDD 80 (295)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCCSSC
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHhccCCC
Confidence 5666553333322122457888999999999887765434555555543 568999999999964 45554444
Q ss_pred cEEEEEeeCC
Q 013451 335 SVFIQVIPLG 344 (442)
Q Consensus 335 s~vIEI~P~g 344 (442)
...|=|+|.|
T Consensus 81 ~p~lgilP~G 90 (295)
T d2bona1 81 IPALGILPLG 90 (295)
T ss_dssp CCEEEEEECS
T ss_pred CceEEEEECC
Confidence 2456789999
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|