Citrus Sinensis ID: 013453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHccccHHHHHcccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHcccHHHHHHHHHccccHHHHHcccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVltiplltsypyIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIlqnravdqdqrgaanGIAMTGMSLfkaagpagggal
Flexible Loop (DISEMBL)
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKaagpagggal
Low Complexity Region (SEG)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL
Disordered region (IsUnstruct)
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ*******GIAM*****************
Disordered Region (DISOPRED)
*****************************************ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASA****************LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL
Disordered Region (DISEMBL)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA*********
Disordered Region (DISPRO)
*********EPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH*********SYDALESASAEVKEE*GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	yes	no	0.954	0.882	0.701	1e-174
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.986	0.897	0.655	1e-164
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.941	0.859	0.608	1e-149
P25351	611	Uncharacterized membrane	yes	no	0.493	0.356	0.324	2e-28
B4EYY4	402	Multidrug resistance prot	yes	no	0.398	0.437	0.281	6e-10
D8MQN9	411	Multidrug resistance prot	no	no	0.441	0.474	0.269	3e-09
A8GCZ5	411	Multidrug resistance prot	no	no	0.343	0.369	0.303	3e-09
P0A4K5	399	Multi-drug resistance eff	yes	no	0.328	0.363	0.298	3e-08
P0A4K4	399	Multi-drug resistance eff	yes	no	0.328	0.363	0.298	3e-08
P39843	400	Multidrug resistance prot	yes	no	0.699	0.772	0.265	4e-08

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  611 bits (1575), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 298/425 (70%), Positives = 346/425 (81%), Gaps = 3/425 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
            LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query: 436 PAGGG 440
           PA  G
Sbjct: 428 PAAAG 432

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  577 bits (1486), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/441 (65%), Positives = 343/441 (77%), Gaps = 5/441 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ +E  L+ ++ Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct: 3   EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62  YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query: 246 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           D  S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
            L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAAN
Sbjct: 362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAAN 421

Query: 422 GIAMTGMSLFKAAGPAGGGAL 442
           GIAMT MSLFK  GPAG G L
Sbjct: 422 GIAMTAMSLFKTVGPAGAGIL 442

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  530 bits (1364), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/427 (60%), Positives = 329/427 (77%), Gaps = 11/427 (2%)

Query: 21  ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
           E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15  EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct: 75  GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 260
           PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH        C ++   L   
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248

Query: 261 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
                E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIA 368

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
           +LSG  L  ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAANGI+MT MS+FK+ G
Sbjct: 369 LLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFG 428

Query: 436 PAGGGAL 442
           PAGGG L
Sbjct: 429 PAGGGVL 435

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 31  LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
            K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SS
Sbjct: 8   FKEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSS 67

Query: 91  FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
           F   + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG
Sbjct: 68  FALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNG 127

Query: 151 LLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS- 205
            +G I+    EI  E +HQAL  ST+   +  G ++GP +GGFL        + P  F  
Sbjct: 128 NVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPH 187

Query: 206 -SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDD 248
            ++ +   +PY LP + + +F  FG+T A  +L ET     D  D
Sbjct: 188 FAKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEETHPAFKDRRD 232

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            L+ +W     T    S + PFL   +++  I K  E +  + G   S +F+F  A+ + 
Sbjct: 13  NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLFS-AIAAP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG ++DR GRK +++     + I   L G + N W  ++ R LLG L G +    A   
Sbjct: 71  FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                +     L T+ST    G +IGP +GG LA      P  F + ++         C 
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184

Query: 221 CISLF 225
            ++LF
Sbjct: 185 IVTLF 189

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W     T +  S + PFL   ++   +      +  ++G V S +F+F  A+ S 
Sbjct: 16  NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + +   L GL+ + W  +  R +LG L G +    A   
Sbjct: 74  FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L  +ST    G +IGP +GG LA      P  F + S+         C 
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187

Query: 221 CISLFAFGVTIAAFWLPETLHRHN 244
            ++LFA           + LH H 
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W+    T    S + PFL   ++   +    + +  ++G V S +F+F  A+ S 
Sbjct: 13  NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + I   L G++ N W  +  R +LG L G +    A   
Sbjct: 71  FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
                      L T+ST    G +IGP +GG LA 
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLAD 165

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (taxid: 1313)

>sp|P39843|BMR2_BACSU Multidrug resistance protein 2 OS=Bacillus subtilis (strain 168) GN=blt PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 161/373 (43%), Gaps = 64/373 (17%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           GS  GY+ ++F   + +TS F G   DR+GRK +II+G     +   +FGL  +  +   
Sbjct: 44  GSTMGYLVAAFAISQLITSPFAGRWVDRFGRKKMIILGLLIFSLSELIFGLGTHVSIFYF 103

Query: 141 TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199
           +R L G     + P + AY  +I   + ++  +  VS A   G IIGP  GGF+A    +
Sbjct: 104 SRILGGVSAAFIMPAVTAYVADITTLKERSKAMGYVSAAISTGFIIGPGAGGFIAGFGIR 163

Query: 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES 259
            P  F+S               I+L A  VT + F L E+L            S +    
Sbjct: 164 MPFFFAS--------------AIALIA-AVT-SVFILKESL------------SIEERHQ 195

Query: 260 ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWAN-----SPKK 314
            S+  KE    +   K+S+   + +   I+    F L   AY  +FSL+++     +PK 
Sbjct: 196 LSSHTKESNFIKDL-KRSIHPVYFIAFIIVFVMAFGLS--AYETVFSLFSDHKFGFTPKD 252

Query: 315 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE--RILGPIMV---ARIAGVLTIPLLT 369
           +  +   + +V  V+ +  F  LV +L     ++   I G I+      ++G LT+ L+T
Sbjct: 253 IAAIITISSIVAVVIQVLLFGKLVNKLGEKRMIQLCLITGAILAFVSTVMSGFLTVLLVT 312

Query: 370 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS 429
            + ++A                  +LL  ++      L N A   +Q+G   G+  T  S
Sbjct: 313 CFIFLAF-----------------DLLRPALTAH---LSNMA--GNQQGFVAGMNSTYTS 350

Query: 430 LFKAAGPAGGGAL 442
           L    GPA GG L
Sbjct: 351 LGNIFGPALGGIL 363

Energy-dependent efflux pump responsible for decreased drug accumulation in multi-drug-resistant cells. Probably uses a transmembrane proton gradient as the energy source. Causes the efflux of a variety of toxic substances, including such structurally diverse compounds as ethidium bromide, rhodamine and acridine dyes, tetraphenylphosphonium, puromycin, chloramphenicol, doxorubicin, and fluoroquinolone antibiotics.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
224097490	495	predicted protein [Populus trichocarpa]	0.986	0.880	0.765	0.0
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.986	0.268	0.715	0.0
296085436	518	unnamed protein product [Vitis vinifera]	0.986	0.841	0.715	0.0
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.961	0.872	0.729	1e-180
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.963	0.874	0.745	1e-179
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.970	0.895	0.700	1e-177
30684565	478	zinc induced facilitator-like 1 protein	0.954	0.882	0.701	1e-172
359481459	490	PREDICTED: protein ZINC INDUCED FACILITA	0.986	0.889	0.682	1e-170
224137524	465	predicted protein [Populus trichocarpa]	0.954	0.907	0.675	1e-167
356548793	488	PREDICTED: protein ZINC INDUCED FACILITA	0.981	0.889	0.659	1e-166

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/443 (76%), Positives = 388/443 (87%), Gaps = 7/443 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 246 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
              S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
           A  L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ SVSI+TG+FILQN AVDQ+QRGA
Sbjct: 362 AAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVSIVTGMFILQNNAVDQNQRGA 421

Query: 420 ANGIAMTGMSLFKAAGPAGGGAL 442
           ANGI+MTGMSLFKA GPAGGGA+
Sbjct: 422 ANGISMTGMSLFKAVGPAGGGAI 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/443 (71%), Positives = 375/443 (84%), Gaps = 7/443 (1%)

Query: 5    EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
            EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197

Query: 65   YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
            YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257

Query: 125  FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317

Query: 185  IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377

Query: 245  DDDDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
            +++     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437

Query: 300  AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
            AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 1497

Query: 360  AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
            AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV+Q QRGA
Sbjct: 1498 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGA 1557

Query: 420  ANGIAMTGMSLFKAAGPAGGGAL 442
            ANGI MT MSLFKAAGPAGGG +
Sbjct: 1558 ANGITMTTMSLFKAAGPAGGGVI 1580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/443 (71%), Positives = 375/443 (84%), Gaps = 7/443 (1%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34  EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92  YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
           IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271

Query: 245 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 391

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
           AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV+Q QRGA
Sbjct: 392 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGA 451

Query: 420 ANGIAMTGMSLFKAAGPAGGGAL 442
           ANGI MT MSLFKAAGPAGGG +
Sbjct: 452 ANGITMTTMSLFKAAGPAGGGVI 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 316/433 (72%), Positives = 367/433 (84%), Gaps = 8/433 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ + P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3   EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61  FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  +T+A  WLPETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240

Query: 246 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +  S + SYDALE A    +A+ KE+  EG E T  +SL  NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY EIFSLWA SP+  GGL+YST  VG VLAI+GF L V Q++LYP +ER LGP+M+ RI
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRI 360

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
           AGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITG+F+LQN AVDQ QRG 
Sbjct: 361 AGVLSIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVSIITGMFLLQNSAVDQHQRGT 420

Query: 420 ANGIAMTGMSLFK 432
           ANGI+MT MSLFK
Sbjct: 421 ANGISMTAMSLFK 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 325/436 (74%), Positives = 373/436 (85%), Gaps = 10/436 (2%)

Query: 3   AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
           A E+++  P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2   AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57

Query: 63  FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
           FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58  FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117

Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
           VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177

Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242
           LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  VT+A  WLPETLH 
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237

Query: 243 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 296
           HN++  S + SYDALE+A    +A+ KE+  EG E T  +SL  NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297

Query: 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356
           HDMAY+EIFSLWA SP+  GGL+YST  VG VLAI+GF LLV QL+LYP +ER LGP+M+
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMI 357

Query: 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ 416
            RIAGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITGLF+LQN AVDQ Q
Sbjct: 358 CRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVSIITGLFLLQNSAVDQHQ 417

Query: 417 RGAANGIAMTGMSLFK 432
           RG ANGI+MT MSLFK
Sbjct: 418 RGTANGISMTAMSLFK 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/437 (70%), Positives = 356/437 (81%), Gaps = 8/437 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+  E  L+N  +++E+CPGCKVDQ+K  + G P+ ELF++WIIVLCTALPISSLFPFLY
Sbjct: 3   EEYTECLLEN--KFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI DF IAK+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+F
Sbjct: 61  FMIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLS+NFWMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLII
Sbjct: 121 NTLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN- 244
           GPA+GGFLAQPA +YP+LFS +S+FGKFP+FLPC  IS+FAF VTI + W+PETLH H  
Sbjct: 181 GPAIGGFLAQPATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKY 240

Query: 245 -DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE 303
            DDDD    S+DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+E
Sbjct: 241 VDDDD----SFDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTE 296

Query: 304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363
           IFSLWANSP+K GGL YST  VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+L
Sbjct: 297 IFSLWANSPRKYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGIL 356

Query: 364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI 423
            + +L+ YP IA LSG  L   +N ASV KN+LS S ITGLFILQN AV QDQRGAANGI
Sbjct: 357 AMVILSCYPLIAKLSGLALTLAVNSASVAKNVLSTSAITGLFILQNNAVRQDQRGAANGI 416

Query: 424 AMTGMSLFKAAGPAGGG 440
           AMT MSLFKA GPA  G
Sbjct: 417 AMTAMSLFKAIGPAAAG 433

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/425 (70%), Positives = 346/425 (81%), Gaps = 3/425 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
            LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query: 436 PAGGG 440
           PA  G
Sbjct: 428 PAAAG 432

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 301/441 (68%), Positives = 361/441 (81%), Gaps = 5/441 (1%)

Query: 7   KLREPFLKNEK-RYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           K RE  LK E   Y E+CPGCK+D LK++  G+P   LF +WI+VLC ALPISSLFPFLY
Sbjct: 3   KNREALLKKEVWEYDESCPGCKIDHLKESNPGIPFKLLFYVWIVVLCAALPISSLFPFLY 62

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGSSFMFGRALTSV WG+VADRYGRKPVI  G  +++IF
Sbjct: 63  FMIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIF 122

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLS N WMA+ TRFLLGS  G+LGP++AYA E+ R+E+QALG+S +STAWGIGL+I
Sbjct: 123 NTLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVI 182

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEK+P++FS ESLFG+FPYFLPCL IS FA GV++  +WLPETLH H +
Sbjct: 183 GPALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKE 242

Query: 246 DDDSCDVSYDALESASAEVKEE----EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           + +  ++    + +   +VKE+    EG+    ++SLLKNWPLMSSIIVYCVF LHDMAY
Sbjct: 243 NKEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAY 302

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           +EIFSLWA SP + GGL+YST  VGEVLA++G  LL+FQL LYP LERILGP+MV+RI  
Sbjct: 303 AEIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGA 362

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
           VLT+PLL+SYP IAMLSG GL+ L+NCAS++KN+L VSI TGLF+LQNRAV Q QRGAAN
Sbjct: 363 VLTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVSITTGLFLLQNRAVTQQQRGAAN 422

Query: 422 GIAMTGMSLFKAAGPAGGGAL 442
           GI+M+ MS FKA GPAGGG+L
Sbjct: 423 GISMSAMSFFKAVGPAGGGSL 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137524|ref|XP_002322579.1| predicted protein [Populus trichocarpa] gi|222867209|gb|EEF04340.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/431 (67%), Positives = 354/431 (82%), Gaps = 9/431 (2%)

Query: 13  LKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQ 72
           L  + +YYE+CPGCK++  K+T +G+P   L  +WI+VLC ALPISSLFPFLYFMI+DF 
Sbjct: 3   LLRKNKYYEDCPGCKIELSKETNTGVPFKYLLYVWIVVLCAALPISSLFPFLYFMIRDFH 62

Query: 73  IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132
           IAKREEDIG YAGYVGS+FMFGRALTSV WG++ADRYGRKPVII GT SVVIFNTLFGLS
Sbjct: 63  IAKREEDIGYYAGYVGSAFMFGRALTSVLWGMIADRYGRKPVIIFGTVSVVIFNTLFGLS 122

Query: 133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
            +FWMA+ TRFLLGSL G+LGP++AYA E+ R+E+QALG+S +ST+WGIGL+IGPALGGF
Sbjct: 123 TSFWMAISTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLVIGPALGGF 182

Query: 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
           LAQPAEK+PN+FSS+SLFG+FPY LPCL IS+F+ GV +    LPET+H H  +D+ C+ 
Sbjct: 183 LAQPAEKFPNIFSSDSLFGRFPYLLPCLLISIFSVGVLVVCCLLPETIHNHKGNDEECND 242

Query: 253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP 312
           S DAL + + E    +       KSLLKNWPL+SSIIVYCVF LHDMAY+EIFSLWA SP
Sbjct: 243 S-DALGATTFESNSSQ-------KSLLKNWPLISSIIVYCVFQLHDMAYAEIFSLWAVSP 294

Query: 313 KKLGGLNYSTQMVGEVLAITG-FSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSY 371
           +K GGL++ST  VGEVLA +G F LL+FQL +YP  ER  GP+MV+R+  VLTIPLL+SY
Sbjct: 295 RKNGGLSFSTADVGEVLAFSGSFGLLLFQLFIYPVAERNFGPVMVSRLGAVLTIPLLSSY 354

Query: 372 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF 431
           P+IA+L G  L  L+NCAS++KN+LSVSI TGLF+LQNR+V Q QRGAANGI+M+ MSLF
Sbjct: 355 PFIALLKGLTLMLLINCASILKNVLSVSITTGLFLLQNRSVAQQQRGAANGISMSAMSLF 414

Query: 432 KAAGPAGGGAL 442
           KA GPA GG+L
Sbjct: 415 KAIGPAAGGSL 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548793|ref|XP_003542784.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Glycine max]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 291/441 (65%), Positives = 361/441 (81%), Gaps = 7/441 (1%)

Query: 4   GEEKLREPFLKNEKRYYENCPGCKVDQLKDTK--SGLPITELFSIWIIVLCTALPISSLF 61
           GEE +++P L  E++YY++CPGCKVDQ K+     G+P+  LF +W++VLC ALPISSLF
Sbjct: 2   GEENVKQPLL--ERKYYKDCPGCKVDQAKELSEGKGVPVKNLFIMWMVVLCAALPISSLF 59

Query: 62  PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121
           PFLYFM++DF IAK E DI SYAGYVGSSFM GR LTSV WG+VADRYGRKPVI+MG  +
Sbjct: 60  PFLYFMVRDFNIAKTEADISSYAGYVGSSFMLGRCLTSVLWGIVADRYGRKPVIVMGIIA 119

Query: 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGI 181
           VVIFNTLFGLS NFWMAV+ RFLLGSLNGLLGP+KAYA E+FREEHQA+GLSTVS AWGI
Sbjct: 120 VVIFNTLFGLSTNFWMAVIMRFLLGSLNGLLGPVKAYASELFREEHQAIGLSTVSAAWGI 179

Query: 182 GLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241
           GLIIGPALGG+LAQP EKYP++F+ +S + KFPYFLP L IS FAF V I   W+PETLH
Sbjct: 180 GLIIGPALGGYLAQPVEKYPHIFTKDSFWDKFPYFLPNLIISAFAFVVAIGCIWIPETLH 239

Query: 242 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
            HN  ++S D    ALES ++    E  +      +LL NWPLMSSIIVYCVFSLHD+AY
Sbjct: 240 NHNCSNESTD-DAKALESGNSGAGNE--KIIQKNDNLLLNWPLMSSIIVYCVFSLHDIAY 296

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
            E+FSLWA SP++LGGLN++T  VG+VL+I+G +L+++QL+LYPF+E+  GPI++AR +G
Sbjct: 297 QEVFSLWAVSPQRLGGLNFTTDNVGDVLSISGLALIIYQLTLYPFVEKASGPIVIARFSG 356

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
           +LTIPLL SYP+IA+LSG  L  +++ AS++KN++S++IIT LF+LQNRAV+Q QRGAAN
Sbjct: 357 MLTIPLLQSYPFIALLSGLALYIVISIASILKNIMSITIITSLFLLQNRAVEQHQRGAAN 416

Query: 422 GIAMTGMSLFKAAGPAGGGAL 442
           GI+MT MSLFKA GPA GGA+
Sbjct: 417 GISMTAMSLFKAIGPATGGAV 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.959	0.887	0.648	4e-145
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.986	0.897	0.603	2.7e-139
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.952	0.869	0.582	8.4e-129
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.461	0.345	0.344	2.5e-43
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.472	0.314	0.309	4.5e-33
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.325	0.227	0.379	4e-31
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.325	0.263	0.386	1.8e-30
DICTYBASE|DDB_G0282945	669	DDB_G0282945 [Dictyostelium di	0.477	0.315	0.297	1.7e-29
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.350	0.322	0.354	3.5e-29
ASPGD|ASPL0000011265	530	AN4019 [Emericella nidulans (t	0.457	0.381	0.276	9.4e-28

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 277/427 (64%), Positives = 324/427 (75%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
             GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct:   308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query:   376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
              LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct:   368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query:   436 PAGGGAL 442
             PA  G +
Sbjct:   428 PAAAGII 434

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
 Identities = 266/441 (60%), Positives = 319/441 (72%)

Query:     6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
             E+ +E  L+ +  Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct:     3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query:    66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
             +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct:    62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query:   126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
             N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST        
Sbjct:   122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNX 245
                      QPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct:   182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query:   246 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
                        LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct:   242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query:   302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
             SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct:   302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query:   362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
              L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAAN
Sbjct:   362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAAN 421

Query:   422 GIAMTGMSLFKAAGPAGGGAL 442
             GIAMT MSLFK  GPAG G L
Sbjct:   422 GIAMTAMSLFKTVGPAGAGIL 442

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
 Identities = 246/422 (58%), Positives = 311/422 (73%)

Query:    21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
             E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct:    15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query:    81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
             G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct:    75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query:   141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
              RFLLG  N LLG I+AYA E+  EE+ AL LS VST                 QPAEKY
Sbjct:   135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query:   201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXXALESA 260
             PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH                +  
Sbjct:   195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254

Query:   261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320
             S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  GGL++
Sbjct:   255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313

Query:   321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 380
             S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA+LSG 
Sbjct:   314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGV 373

Query:   381 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 440
              L  ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAANGI+MT MS+FK+ GPAGGG
Sbjct:   374 TLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGG 433

Query:   441 AL 442
              L
Sbjct:   434 VL 435

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 342 (125.4 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query:    36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             S  PI +LF + +  +C  +   S+FP++Y M++ F +   +  I  YAG + SSF F  
Sbjct:    21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80

Query:    96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
                 +FWG ++D+ GRKPV+IMG     I   +FG + N   A++ R L G LNG +G +
Sbjct:    81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140

Query:   156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
             +    EI   +EHQ    S +                   QP + YP LFS ES+F KFP
Sbjct:   141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200

Query:   215 YFLPCL-CISLFAFGVTIAAFWLPET 239
             + LP L C+ +   G+ +   +L ET
Sbjct:   201 FLLPNLVCVVVLMTGIVVGLLFLEET 226

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
 Identities = 65/210 (30%), Positives = 102/210 (48%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+  + +P  +L   ++++LC A+  SS F ++   I    +  + E +G YAG++ SSF
Sbjct:     8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L+S FWG +ADR GRKP++I G+   VI     G S +  M +L+R + G LNG 
Sbjct:    68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127

Query:   152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
             +G +K Y  E   + +Q      V                    P +   ++F    LF 
Sbjct:   128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187

Query:   212 KFPYFLPCLCIS-LFAFGVTIAAFWLPETL 240
              FP+FLP L I+ L   G      ++ ETL
Sbjct:   188 LFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 4.0e-31, Sum P(2) = 4.0e-31
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             ++   G P+ ++F I  I     +  +SLFP++YFMI+DF IA    DI  Y+GY+ +SF
Sbjct:    11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              F +    V WG  +D+YGRK +++MG     +   +FG S NFW+AV  R L+G LNG 
Sbjct:    71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130

Query:   152 LGPIKAYACEIF-REEHQALGLSTV 175
             +  ++    EI   + HQ++  ST+
Sbjct:   131 IAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
 Identities = 56/145 (38%), Positives = 89/145 (61%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K++ +  PI ++  I II     L  +S+FP++YFMI+DF IA +EEDI  Y+GY+ SSF
Sbjct:     8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L ++ WG ++++ GRK ++I+G     I   LFG + N++ A++ R L G LNG 
Sbjct:    68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127

Query:   152 LGPIKAYACEIFREE-HQALGLSTV 175
             +  ++    EI  E+ HQ L  ST+
Sbjct:   128 VAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
 Identities = 63/212 (29%), Positives = 109/212 (51%)

Query:    29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
             +QL DT + LP+ ++ +I+II+LC A+   S+FP++ F++  F +   +  +G + G + 
Sbjct:    65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124

Query:    89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
             SS+   + ++S FWG  ++  GR+P +++G    +I  T  G S N+ M V+ RFL G L
Sbjct:   125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184

Query:   149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
             NG +   K    EI    +QA   S +                      +K+P L    +
Sbjct:   185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244

Query:   209 LFGKFPYFLPCLCISLFAF-GVTIAAFWLPET 239
             +F +FPY LP +   LF+  G+ +   +L E+
Sbjct:   245 IFCRFPYLLPNIICVLFSLTGLVLGYVYLQES 276

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 3.5e-29, Sum P(2) = 3.5e-29
 Identities = 62/175 (35%), Positives = 94/175 (53%)

Query:    67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:   127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 239
                      +PA+ YP++FS + +FG+FPY LP  +C +L    +  A  +L ET
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ASPGD|ASPL0000011265 AN4019 [Emericella nidulans (taxid:162425)]

 Score = 264 (98.0 bits), Expect = 9.4e-28, Sum P(2) = 9.4e-28
 Identities = 57/206 (27%), Positives = 102/206 (49%)

Query:    38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRAL 97
             LP+ +L  + I      + ++S  P+L  MI+   + + E  +  +AG   +   F +A 
Sbjct:     8 LPVRQLLILSICRFAEPIAVTSYLPYLPEMIESVGVPQSE--VAKWAGLTSAISSFSQAA 65

Query:    98 TSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKA 157
              +V+WG  +DR+GRKP+I++G  + ++ +  FGLS +  M +  R ++G +NG +G I+ 
Sbjct:    66 MAVYWGTASDRFGRKPIILLGLTATMVLSLAFGLSKSLPMLITCRGMIGFMNGNVGIIRT 125

Query:   158 YACEIFRE-EHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFPYF 216
                E+ ++ E Q    S +                   +P EKYP +F     F ++P+ 
Sbjct:   126 MVAEMVQDKELQPRAFSIMPMVWTIGSIFGPSFGGSLARPTEKYPEIFGHSWFFKEYPFV 185

Query:   217 LPCLCISLF-AFGVTIAAFWLPETLH 241
             LP +    F   G++    +L ETLH
Sbjct:   186 LPNMVAGFFFIIGISTGFLFLHETLH 211

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ1	ZIFL1_ARATH	No assigned EC number	0.7011	0.9547	0.8828	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-23
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-18
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-12
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-11
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	6e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	8e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-08
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	9e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-07
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	2e-06
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	4e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	9e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	7e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	8e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.003

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 99.0 bits (247), Expect = 6e-23
 Identities = 84/393 (21%), Positives = 146/393 (37%), Gaps = 49/393 (12%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+  E       G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTE------IGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA             SLFG    FL    ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
           L A  +       P    +                      +E         K LL++  
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204

Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343
           L   + +              F+L    P     L  S  + G +L + G    + +L L
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257

Query: 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG 403
               +R+ G      +A +L I        +++        +   A ++    +  +   
Sbjct: 258 GRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESSLWLLV---ALLLLGFGAGLVFPA 313

Query: 404 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436
           L  L +    +++RG A+G+  T  SL  A GP
Sbjct: 314 LNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 84/401 (20%), Positives = 134/401 (33%), Gaps = 78/401 (19%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  +++    + L    L P L  + +D  ++       S AG + S+F  G AL S+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
           G ++DR+GR+ V+++G     + + L   + + W+ ++ RFLLG   G L P   A   E
Sbjct: 55  GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC 221
            F  + +   L   S  +G+G ++GP LGG LA+             LF         + 
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-------SLGWRWLFL--------IL 159

Query: 222 ISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281
             L      +  F L   L                                         
Sbjct: 160 AILGLLLALLLLFLLRLLL----------------------------------------- 178

Query: 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL 341
              ++  ++   +                      GL  S   +G +L      LL  +L
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238

Query: 342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSII 401
                L  I   +    +  +   P L       +L GFGL F                 
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF---------------AF 283

Query: 402 TGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442
             L  L +     + RG A+G+  T  SL  A GP   G L
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ            
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117

Query: 208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
           + F     FL  L ++ F     + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G++ S+ + G A  ++F+G +ADR GR+ V++       +F  L  L+ N    ++ RF
Sbjct: 54  LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113

Query: 144 LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
           L G  L GL+  + A   E   +  +   +  +   + IG  +G  L G+L
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
           W+    T    S + PFL   ++   +      +  ++G V S +F+F  A+ S FWG +
Sbjct: 20  WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77

Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
           ADR GRK +++     + I   L GL+ N W  ++ R LLG L G +    A        
Sbjct: 78  ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137

Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
                 L T+ST    G ++GP  GG LA      P  F + S+         C  ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191

Length = 408

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 63.0 bits (154), Expect = 8e-11
 Identities = 70/366 (19%), Positives = 124/366 (33%), Gaps = 64/366 (17%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q       
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ------- 162

Query: 203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASA 262
                 LFG    FL    ++L A    +    LP                        +
Sbjct: 163 ------LFGWRATFLAIAVLALLAL--LLLWKLLPP-----------------------S 191

Query: 263 EVKEEEGREATPKKSLLKNWPLMSSIIVY-CVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321
           E+             LL+   ++  ++      + H   Y+ I       P       +S
Sbjct: 192 EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYI------RPFLESVAGFS 245

Query: 322 TQMVGEVLAITGF-----SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 376
              V  VL   G      +LL  +L+      R L   ++     +L +    + P +A+
Sbjct: 246 VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304

Query: 377 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436
              F   F  + A                  +   +  D    A  + +   +L  A G 
Sbjct: 305 ALLFLWGFAFSPALQG------------LQTRLARLAPDAADLAGSLNVAAFNLGIALGA 352

Query: 437 AGGGAL 442
           A GG +
Sbjct: 353 ALGGLV 358

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  + ++ L   L     +  L ++    Q         + AG + S F  G  L ++  
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--AEAGLLLSLFGLGGILGALLG 231

Query: 103 GLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLL-GPIKAYAC 160
           GL++DR GR+ ++++ G     +   L  L+ +  + ++   LLG   G     +   A 
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           E+   E +       +T   +G  +GP L G L  
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 53.8 bits (129), Expect = 9e-08
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           LFS W+  +        +F  +Y +  D  +   E        ++ ++   GR      +
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
           GL+AD++GRKP+++    +  +   L GL+    M  L+RF++G  + G       YA E
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
           I +    + F  +   +        S   +G + S F  G  + S+F G + DR+GRK  
Sbjct: 19  IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78

Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
           +++G    VI   L G +   +F+M ++ R ++G
Sbjct: 79  LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Length = 449

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)

Query: 72  QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128
            IA    D G  AG V    S+++ G A+  +F+G +AD +GRKPVI+ GT    +    
Sbjct: 16  VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGL 183
             L+      +  RF    L+GL        I A   ++F +E  +  +S V+    I  
Sbjct: 73  CALAQTIDQLIYMRF----LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128

Query: 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHR 242
           ++ P +GG+L          FS  ++F           ++L A       F+  PETL +
Sbjct: 129 LLAPIIGGWLL-------VWFSWHAIF---------WVLALAAILAAALVFFFIPETLPK 172

Query: 243 HN 244
             
Sbjct: 173 ER 174

Length = 377

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 81/370 (21%), Positives = 136/370 (36%), Gaps = 84/370 (22%)

Query: 97  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 213 FPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272
                  + +++   G  I A+ LP+                     A+A    ++ +  
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV-------------------PAAAPEVFDKKKYL 216

Query: 273 TPK------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP---KKLGGLNYSTQ 323
            PK      K L  +  L  +II    F       S++    AN P   K++ GL+ +T 
Sbjct: 217 FPKLLWRNLKLLRSDRVLWLAIIGLSYF----WFISQL--AQANFPAYAKEVLGLD-NTF 269

Query: 324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG----VLTIPL----LTSYPYIA 375
            V  +LA +   +              +G ++  R++G    +  +PL    L       
Sbjct: 270 QVQYLLAASAIGI-------------GIGSLLAGRLSGRHIELGLVPLGALGLA------ 310

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFI------LQNRAVDQDQRG----AANGIAM 425
            LS F L    + ASV+          GLFI      +Q RA  + + G    A N +  
Sbjct: 311 -LSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA-PEKELGKVLAANNFLQN 368

Query: 426 TGMSLFKAAG 435
            GM LF A  
Sbjct: 369 VGMLLFLALT 378

Length = 1146

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
            S       + M    + S   G +ADRY RK V+I       +  A +     L GL++
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
             W   +   +L        P  +A   ++  EE      S       +  I+GP +GG 
Sbjct: 93  --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150

Query: 193 LAQ 195
           +  
Sbjct: 151 MYA 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 82  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
             +  F +   NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFFV---NGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 77  EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
           + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33  QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 145 LG 146
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 71  FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 185 IGPAL 189
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 40  ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
           +T LF +W  + C       L P L    + F +   E      A  +  +F  G  + S
Sbjct: 18  LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65

Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
           +  GL+  + G K  I++G     +   LF     S ++   ++  F+L S  GLL    
Sbjct: 66  LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125

Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
             Y   + + E  A  L+      G+G I+GP LG  L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
KOG2615	451	consensus Permease of the major facilitator superf	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK03699	394	putative transporter; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK11043	401	putative transporter; Provisional	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
KOG0569	485	consensus Permease of the major facilitator superf	99.98
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.98
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
PRK10054	395	putative transporter; Provisional	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.95
PRK11902	402	ampG muropeptide transporter; Reviewed	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.93
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.92
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.9
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.9
PRK09669	444	putative symporter YagG; Provisional	99.88
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.87
PTZ00207	591	hypothetical protein; Provisional	99.86
PRK10429	473	melibiose:sodium symporter; Provisional	99.86
PRK09848	448	glucuronide transporter; Provisional	99.85
PF13347	428	MFS_2: MFS/sugar transport protein	99.84
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.84
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.83
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.83
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.82
PRK11462	460	putative transporter; Provisional	99.8
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.8
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.79
COG2211	467	MelB Na+/melibiose symporter and related transport	99.79
KOG2563	480	consensus Permease of the major facilitator superf	99.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.76
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.76
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.73
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.67
KOG3626	735	consensus Organic anion transporter [Secondary met	99.67
PRK10642	490	proline/glycine betaine transporter; Provisional	99.65
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.64
PRK15011	393	sugar efflux transporter B; Provisional	99.6
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.59
PRK05122	399	major facilitator superfamily transporter; Provisi	99.58
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.57
PRK09528	420	lacY galactoside permease; Reviewed	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.56
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.56
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.52
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.52
PRK09705	393	cynX putative cyanate transporter; Provisional	99.51
PRK12382	392	putative transporter; Provisional	99.5
PRK03633	381	putative MFS family transporter protein; Provision	99.5
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.49
PRK03699	394	putative transporter; Provisional	99.48
PRK03893	496	putative sialic acid transporter; Provisional	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.46
PRK03545	390	putative arabinose transporter; Provisional	99.44
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.44
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.43
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.43
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.39
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.39
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.38
PRK09952	438	shikimate transporter; Provisional	99.38
TIGR00895	398	2A0115 benzoate transport.	99.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.37
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.37
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.37
PRK10504	471	putative transporter; Provisional	99.36
TIGR00900	365	2A0121 H+ Antiporter protein.	99.36
PRK11663	434	regulatory protein UhpC; Provisional	99.36
PRK12307	426	putative sialic acid transporter; Provisional	99.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.35
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.34
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.33
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.33
PRK10054	395	putative transporter; Provisional	99.28
PRK11010	491	ampG muropeptide transporter; Validated	99.28
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.28
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.26
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.25
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.25
TIGR00898	505	2A0119 cation transport protein.	99.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.23
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.23
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.22
KOG0569	485	consensus Permease of the major facilitator superf	99.22
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.21
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.21
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.2
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.2
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.2
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.2
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.19
PRK10091	382	MFS transport protein AraJ; Provisional	99.17
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.16
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.13
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.11
TIGR00901	356	2A0125 AmpG-related permease.	99.11
PRK11902	402	ampG muropeptide transporter; Reviewed	99.11
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.09
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.08
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.06
PF13347	428	MFS_2: MFS/sugar transport protein	99.06
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.06
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.06
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.05
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.05
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.05
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.05
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.04
KOG0637	498	consensus Sucrose transporter and related proteins	99.04
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.03
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.03
PRK09848	448	glucuronide transporter; Provisional	99.02
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.02
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.0
PRK11043	401	putative transporter; Provisional	99.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.99
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.99
PRK10133	438	L-fucose transporter; Provisional	98.97
PRK09669	444	putative symporter YagG; Provisional	98.95
PRK10429	473	melibiose:sodium symporter; Provisional	98.95
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.92
COG0477	338	ProP Permeases of the major facilitator superfamil	98.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.89
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.83
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.81
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.76
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.75
COG2211	467	MelB Na+/melibiose symporter and related transport	98.75
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.75
KOG3762	618	consensus Predicted transporter [General function	98.74
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.7
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.7
PRK11462	460	putative transporter; Provisional	98.7
KOG2532	466	consensus Permease of the major facilitator superf	98.68
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.68
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.67
KOG3762	618	consensus Predicted transporter [General function	98.66
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.65
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.6
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.56
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.55
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.5
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.5
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.5
PF12832	77	MFS_1_like: MFS_1 like family	98.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.43
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.37
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.31
KOG0254	513	consensus Predicted transporter (major facilitator	98.28
KOG3810	433	consensus Micronutrient transporters (folate trans	98.27
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.24
TIGR00805	633	oat sodium-independent organic anion transporter.	98.23
PTZ00207	591	hypothetical protein; Provisional	98.23
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.19
KOG2615	451	consensus Permease of the major facilitator superf	98.15
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.09
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.08
COG3202	509	ATP/ADP translocase [Energy production and convers	98.06
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	98.05
KOG2533	495	consensus Permease of the major facilitator superf	98.04
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.98
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.98
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.86
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.79
KOG3880	409	consensus Predicted small molecule transporter inv	97.68
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.54
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.45
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.4
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.34
PF12832	77	MFS_1_like: MFS_1 like family	97.28
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.15
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.07
KOG3097	390	consensus Predicted membrane protein [Function unk	97.01
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.74
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.73
PRK03612	521	spermidine synthase; Provisional	96.7
KOG2563	480	consensus Permease of the major facilitator superf	96.66
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.49
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.46
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.36
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.99
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.81
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.77
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.65
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.38
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.04
PRK03612	521	spermidine synthase; Provisional	94.57
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	94.54
COG0477	338	ProP Permeases of the major facilitator superfamil	94.54
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.87
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.17
KOG0637	498	consensus Sucrose transporter and related proteins	90.67
KOG3880	409	consensus Predicted small molecule transporter inv	87.08
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.48
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	81.52
KOG3626	735	consensus Organic anion transporter [Secondary met	80.22

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-35  Score=262.73  Aligned_cols=347  Identities=20%  Similarity=0.214  Sum_probs=276.8

Q ss_pred             CCChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhH
Q 013453           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (442)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (442)
                      +..+..++.+.++.|............+|++.+|+|+|..+      .|++.+.|.++..+++|+...+.||+.||++++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl   82 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLL   82 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            34566788888999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       117 ~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ..+.++.++++++++++||+.++++|++.|+..|.+++ ..++.++..|+++|++++++...+..++.++|.+++.++.+
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            99999999999999999999999999999999999998 59999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccc
Q 013453          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (442)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (442)
                             .+         +||..|.+.+.++++.++ .+..+|  |+..+++.+.                     +...
T Consensus       163 -------~~---------GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~---------------------~~~~  203 (394)
T COG2814         163 -------LF---------GWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPG---------------------PLRT  203 (394)
T ss_pred             -------Hh---------hHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCc---------------------chhH
Confidence                   44         455555888888877754 556677  2221111100                     1123


Q ss_pred             cccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchh
Q 013453          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (442)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (442)
                      ..+++|+|+++...+..++....++...++...++.+     ..|++....++....++++.++++. +++++.|| +.+
T Consensus       204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~-----v~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~dr-~~~  276 (394)
T COG2814         204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLES-----VAGFSVSAVSLVLLAFGIAGFIGNL-LGGRLADR-GPR  276 (394)
T ss_pred             HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHH-----ccCCCHhHHHHHHHHHHHHHHHHHH-HHhhhccc-cch
Confidence            4568999999999999998888888777777666554     3799999999999999999999999 77778888 777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhh
Q 013453          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (442)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (442)
                      +.+.....+..+....+.+...    ..+.......+ .++..............+ .-|+.++.+.+++....++|.++
T Consensus       277 ~~l~~~~~l~a~~~l~l~~~~~----~~~~~~~~~~~-wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~  350 (394)
T COG2814         277 RALIAALLLLALALLALTFTGA----SPALALALLFL-WGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL  350 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHH-HHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH
Confidence            7777776666666666555432    22222222222 222222222333444444 33589999999999999999999


Q ss_pred             hcccCCC
Q 013453          435 GPAGGGA  441 (442)
Q Consensus       435 gp~i~G~  441 (442)
                      |..++|.
T Consensus       351 GA~lGG~  357 (394)
T COG2814         351 GAALGGL  357 (394)
T ss_pred             HHHHHHH
Confidence            9988874

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=6.4e-35  Score=272.94  Aligned_cols=377  Identities=13%  Similarity=0.060  Sum_probs=264.8

Q ss_pred             CChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 013453           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (442)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (442)
                      .+++.+..+++..++++++...+....|.+.+|+|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            3456667788888899999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +.++++++.+++++++|++++++.|+++|++.+...|. ..++.|++|+++|++++++++.+.++|.++++.+++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332        79 IMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999988884 78899999999999999999999999999999999988741


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCC-CCccchhhhhhhhhhhhh---hhhhhccc
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHND-DDDSCDVSYDALESASAE---VKEEEGRE  271 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~  271 (442)
                      .. ..+         ..+||..+.+.++..++. .+..+++||+|++.+. .+++++...+..+....+   .++..++.
T Consensus       159 ~~-~~~---------~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
T TIGR02332       159 DG-LMA---------LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHA  228 (412)
T ss_pred             CC-CCC---------ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence            10 001         234555557776666554 4455677888754321 111111110111100000   00000000


Q ss_pred             ----ccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013453          272 ----ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (442)
Q Consensus       272 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (442)
                          ...+++++ ++.++...+.+++.......+..+.|.++...    +.+++..+++.......++.+++.+ ...++
T Consensus       229 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l  302 (412)
T TIGR02332       229 AMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMI-WWSRH  302 (412)
T ss_pred             cccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHH-HHHHH
Confidence                11223333 57777777777777777777888888887541    2467788889889999999999988 77777


Q ss_pred             HHhhchhHH-HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHH
Q 013453          348 ERILGPIMV-ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT  426 (442)
Q Consensus       348 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  426 (442)
                      .||+++|+. .........+.+. +...  ... . ......... .........+.......+..|++.|+++.|+.+.
T Consensus       303 ~dr~~~r~~~~~~~~~~~~~~~~-~~~~--~~~-~-~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~  376 (412)
T TIGR02332       303 SDRLKERKHHTALPYLFAAAGWL-LASA--TDH-N-LIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINA  376 (412)
T ss_pred             hcccCccHHHHHHHHHHHHHHHH-HHHh--cCC-H-HHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence            788776553 3333333333221 1111  111 1 111111111 1111112223344555677899999999999999


Q ss_pred             HHHHHHhhhcccCCCC
Q 013453          427 GMSLFKAAGPAGGGAL  442 (442)
Q Consensus       427 ~~~~g~~~gp~i~G~l  442 (442)
                      ..++|++++|.+.|.+
T Consensus       377 ~~~~g~~~~p~~~g~i  392 (412)
T TIGR02332       377 TGNIGSALSPFLIGIL  392 (412)
T ss_pred             hhhhhhhhhhhhcccc
Confidence            9999999999988763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1e-34  Score=277.93  Aligned_cols=371  Identities=15%  Similarity=0.083  Sum_probs=275.3

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +..+..+++..++..++.++++..+|.+.+|+|.+.++      .+|+.+.|.++..++++++|+++||+|||++++++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            44566788899999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhc-cccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      +++.++++++++++|++.++++|+++|++.+...| ....+.+.+ |+++|++++++......+|..+||.+++++.+  
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--  156 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--  156 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            99999999999999999999999999999888887 477776765 67999999999999999999999999999998  


Q ss_pred             ccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhh---------hhhhh---hh-hh
Q 013453          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALES---AS-AE  263 (442)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~---~~-~~  263 (442)
                           .+|||+.|         ++...+.++. .+..+++||++++.+++.+......         ....+   .. ..
T Consensus       157 -----~~gwr~~f---------~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~  222 (495)
T PRK14995        157 -----HFYWGSVF---------LINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL  222 (495)
T ss_pred             -----cCChHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence                 45555444         6655555444 3445567776543222111111000         00000   00 00


Q ss_pred             ------------------hhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHH
Q 013453          264 ------------------VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (442)
Q Consensus       264 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (442)
                                        ..+.+.+.+....+++|+|.+....+..++......+...++|.|++..     +|+++.++
T Consensus       223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a  297 (495)
T PRK14995        223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA  297 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence                              0111222333445788999888777777776666666666777766533     68999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013453          326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLF  405 (442)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (442)
                      |....+..++..++.+ +.+++.||.++|+.+..+..+..++..++.......  ..+.. .....+.+.+.....+...
T Consensus       298 g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~--~~~~~-~~~~~l~G~g~g~~~~~~~  373 (495)
T PRK14995        298 GMFMLPVMVASGFSGP-IAGILVSRLGLRLVATGGMALSALSFYGLAMTDFST--QQWQA-WGLMALLGFSAASALLAST  373 (495)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC--chHHH-HHHHHHHHHhHHHHHHHHH
Confidence            9999999999999988 666677788888888777777666655544332211  22221 2222333334444455566


Q ss_pred             hhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          406 ILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       406 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ....+..|+++++.+.++.++.+++|+.+|+.+.|.
T Consensus       374 ~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~  409 (495)
T PRK14995        374 SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGL  409 (495)
T ss_pred             HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777999999999999999999999999988764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=2.7e-35  Score=269.63  Aligned_cols=332  Identities=15%  Similarity=0.050  Sum_probs=237.5

Q ss_pred             hcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccch
Q 013453           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (442)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~  134 (442)
                      .....+.+.+|.+.+|+|.++.+      .|++.+.+.+++.+++++.|+++||+|||+++..+......+......+++
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   78 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN   78 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc
Confidence            34456789999999999999999      999999999999999999999999999998876655555444433333479


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCc
Q 013453          135 FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (442)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (442)
                      ++.+++.|+++|++.+...+....++|++|+|+|++++++.+.+..+|.++++++++++.+       .+|         
T Consensus        79 ~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~g---------  142 (368)
T TIGR00903        79 YEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGG---------  142 (368)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccc---------
Confidence            9999999999999988765567777999999999999999999999999999999999987       344         


Q ss_pred             ChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHH
Q 013453          215 YFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (442)
Q Consensus       215 ~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (442)
                      ||..+.+.++++++. ++.++++||+|++++++.+   ..         +       ..+.+++++++|.+|...+..++
T Consensus       143 Wr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~---~~---------~-------~~~~~~~ll~~~~~~~~~~~~~~  203 (368)
T TIGR00903       143 LQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG---FK---------D-------AVKEFGALAGRKDLWIIGAILGF  203 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc---hH---------H-------HHHHHHHHHcChhHHHHHHHHHH
Confidence            555557766666554 4456678988754321100   00         0       00135678999999999999999


Q ss_pred             HHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 013453          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (442)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (442)
                      ......++.++.|.|+.+      .|++.. .+.......+.+.++...+.++.+|+..|+...........+.+..+..
T Consensus       204 ~~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~  276 (368)
T TIGR00903       204 GVALFDNLAIWLEAALRP------AGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF  276 (368)
T ss_pred             HHHHHHHHHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988853      245543 5666666666666665555555555422333233233333333322222


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          374 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      ..     ..+... ....+.+++.....+..+.+.+|.+|++.||++.|+.+..+++++.++|.+.|
T Consensus       277 ~~-----~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~  337 (368)
T TIGR00903       277 EL-----NRLALF-AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM  337 (368)
T ss_pred             cc-----ccHHHH-HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence            11     111212 22222233344455667788999999999999999999999999999988765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=3.8e-35  Score=285.52  Aligned_cols=377  Identities=15%  Similarity=0.126  Sum_probs=270.9

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .+.++.+...++...+...+|.+.++++.+..+      .+++.+++.++.+++++++|+++||+|||+++++++++.++
T Consensus       171 i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i  244 (742)
T TIGR01299       171 VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF  244 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            455566666777777888999999999999988      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCc
Q 013453          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (442)
Q Consensus       125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (442)
                      +.++++++++++.++++|++.|++.|...+ +.+++.|++|+++|++.+++..++..+|.++++.++..+..       .
T Consensus       245 ~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~-------~  317 (742)
T TIGR01299       245 FAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP-------H  317 (742)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Confidence            999999999999999999999999888778 59999999999999999999999999999999999988876       5


Q ss_pred             ccccccc----cCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccch--hhhhhhhhhhh---------------
Q 013453          204 FSSESLF----GKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESASA---------------  262 (442)
Q Consensus       204 ~gw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~---------------  262 (442)
                      +||+...    ...+||..+.+.+++.++.++..+++||+|++...+.+.++  +..+++.....               
T Consensus       318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~  397 (742)
T TIGR01299       318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHI  397 (742)
T ss_pred             ccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHH
Confidence            6665321    24578998888888888777788889999987433322111  11111110000               


Q ss_pred             hh--hhh-----hcccc------------------cccccccccchh---HHHHHHHHHHHHHHhhHHHHHHHHhcCC--
Q 013453          263 EV--KEE-----EGREA------------------TPKKSLLKNWPL---MSSIIVYCVFSLHDMAYSEIFSLWANSP--  312 (442)
Q Consensus       263 ~~--~~~-----~~~~~------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  312 (442)
                      +.  ++.     +.+..                  ..++++++.+..   +...+..++..+.++++..++|..+...  
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~  477 (742)
T TIGR01299       398 KTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQA  477 (742)
T ss_pred             HHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00  000     00000                  023345554433   3344445555566666677777543210  


Q ss_pred             --------------ccc-------C-------cc------cC--------------------------------------
Q 013453          313 --------------KKL-------G-------GL------NY--------------------------------------  320 (442)
Q Consensus       313 --------------~~~-------~-------~~------~~--------------------------------------  320 (442)
                                    +..       +       ++      |+                                      
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  557 (742)
T TIGR01299       478 DDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFE  557 (742)
T ss_pred             HHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcc
Confidence                          000       0       00      00                                      


Q ss_pred             -----------------------------------ChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHH
Q 013453          321 -----------------------------------STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  365 (442)
Q Consensus       321 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (442)
                                                         +.........+.+++.+++.+ +..++.||+|||+++..+.++.+
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~i-l~g~L~Dr~GRr~~l~~~~~lsa  636 (742)
T TIGR01299       558 NTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNI-VSALLMDKIGRLRMLAGSMVLSC  636 (742)
T ss_pred             ccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHH
Confidence                                               001123445566778888887 77778888899999998888888


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          366 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ++.+++.+...     ... .++..++.+++..+..+....+++|.+|++.|++++|+.++...+|.++||.++|.
T Consensus       637 i~~ll~~~~~s-----~~~-ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~  706 (742)
T TIGR01299       637 ISCFFLSFGNS-----ESA-MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGS  706 (742)
T ss_pred             HHHHHHHHHcc-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776655432     111 22222233444455677888999999999999999999999999999999998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-35  Score=258.11  Aligned_cols=366  Identities=18%  Similarity=0.150  Sum_probs=285.4

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      +++.++.++++....++.+.......|.+.++.++|.+|      .|++.+.+.+.+.++-++.|.++||.++|+.+.++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence            344455788888888889999999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh--hhhcc
Q 013453          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQ  195 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~  195 (442)
                      +++.++.+++++++++.+.+.+.-+++|..+|.-.| +...++.|++++|||+..++++.+.++|..+.|++.  +++..
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999888 799999999999999999999999999999999999  77776


Q ss_pred             ccccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhh-hhhhccc--
Q 013453          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV-KEEEGRE--  271 (442)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--  271 (442)
                             +.+         ||..++..++++++. ++.++..+|+|+...-++-+      +.+++..+. +++++++  
T Consensus       181 -------~~~---------w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie------~~~~d~~e~~~~~~~~~~l  238 (448)
T COG2271         181 -------HGG---------WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIE------EYRGDPLEIYEEEKENEGL  238 (448)
T ss_pred             -------ccc---------hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHH------HhhcCchhhhhhhccCCCc
Confidence                   334         444557777777665 55667788888654332211      111111111 1111111  


Q ss_pred             ---ccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 013453          272 ---ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (442)
Q Consensus       272 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (442)
                         ..-.+.+++||.+|.+.+..++....-++...+.|+|+.+.     .|+|..+++...+.+-++++++.+ +.++++
T Consensus       239 s~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~L-l~GwlS  312 (448)
T COG2271         239 TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTL-LAGWLS  312 (448)
T ss_pred             cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence               12345678999999999999999999999999999998864     688999999999999999999999 666666


Q ss_pred             Hh-h-chhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHH
Q 013453          349 RI-L-GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT  426 (442)
Q Consensus       349 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  426 (442)
                      |+ + |||....+.+.+.....++..+...  + .......++.+..+++..+..-..-....|..|++..|++.|+...
T Consensus       313 DklfkgrR~p~~~i~~~~i~~~~~~~w~~~--~-~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl  389 (448)
T COG2271         313 DKLFKGRRGPMALIFMLLITASLVLYWLAP--N-GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL  389 (448)
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHHcCC--C-ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence            65 3 5666555554444444443333321  1 1223333444444555555555667778899999999999999999


Q ss_pred             HHHH-HHhhhcccCCC
Q 013453          427 GMSL-FKAAGPAGGGA  441 (442)
Q Consensus       427 ~~~~-g~~~gp~i~G~  441 (442)
                      +.++ |.+.+....|+
T Consensus       390 f~Yl~Ga~~a~~~~g~  405 (448)
T COG2271         390 FAYLIGAALAGLPLGY  405 (448)
T ss_pred             HHHHhhHHhcCCccee
Confidence            9999 88888777765

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=4.3e-35  Score=279.02  Aligned_cols=369  Identities=15%  Similarity=0.072  Sum_probs=254.1

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (442)
                      ...++..++.++++..+.+..|.+.+|+|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..+.++++
T Consensus        32 ~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~  105 (467)
T PRK09556         32 LVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHH
Confidence            3556666777778889999999999999999999      9999999999999999999999999999999998888887


Q ss_pred             HHHHHHhc-----cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          124 IFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       124 i~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      +..+..++     +++++.+++.|+++|++.+...| ..++++|++|+++|++++++.+.+.++|.++++.+..++.+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~  185 (467)
T PRK09556        106 ICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF  185 (467)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence            77766554     68999999999999999888877 5889999999999999999999999999999999987766410


Q ss_pred             ccCCCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccc-cc
Q 013453          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PK  275 (442)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  275 (442)
                            +       ..+|+..+.+.+++.++.. +.+++.+++|++.+..++++ ...+......++.++++..... ..
T Consensus       186 ------~-------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  251 (467)
T PRK09556        186 ------F-------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPISEEDKETESTDMTKWQIFV  251 (467)
T ss_pred             ------c-------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccchhhhccccccCcHHHHHH
Confidence                  0       1124444455555555443 34445566554322111100 0000000000000000000001 11


Q ss_pred             ccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhH
Q 013453          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (442)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (442)
                      ++.+++|.+|...+..++......+...+.|.|+.+     .+|++..+++.......++.+++.+ ..+++.||.++|+
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~-----~~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~g~r~  325 (467)
T PRK09556        252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQ-----ELGFSKEDAINTFTLFEIGALVGSL-LWGWLSDLANGRR  325 (467)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCc
Confidence            236889999988888888777777777888888753     3689999999999888999999988 7777888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHH-HHhh
Q 013453          356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAA  434 (442)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~  434 (442)
                      ..........+........ .  ....+. ..+..+..+....+..........|..|++.+|++.|+.+...++ |.++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~  401 (467)
T PRK09556        326 ALVACIALALIIFTLGVYQ-H--ATSEYM-YLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF  401 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHH-h--cCcHHH-HHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH
Confidence            6555433333322222221 1  111211 112222222222222222335666899999999999999999997 7799


Q ss_pred             hcccCCCC
Q 013453          435 GPAGGGAL  442 (442)
Q Consensus       435 gp~i~G~l  442 (442)
                      +|.+.|++
T Consensus       402 ~~~~~G~i  409 (467)
T PRK09556        402 AKVGLGMI  409 (467)
T ss_pred             HhhhHHHH
Confidence            99988753

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=4e-34  Score=268.85  Aligned_cols=374  Identities=15%  Similarity=0.168  Sum_probs=260.1

Q ss_pred             CCChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhH
Q 013453           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (442)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (442)
                      +.+++.+...++..+.+.++.....+..|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~   81 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMV   81 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34556667888999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       117 ~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+.++.+++.++++++++++.+++.|++.|++.+...+ ..+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877 59999999999999999999999999999999999999886


Q ss_pred             ccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhc---ccc
Q 013453          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG---REA  272 (442)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  272 (442)
                             ..+       .+||..+.+.++..++..+....+||++++++++++++ ...+..++..++++..+.   +..
T Consensus       162 -------~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  226 (405)
T TIGR00891       162 -------VWG-------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKA-LVRTMVDILYGGEHRIANIVMTLA  226 (405)
T ss_pred             -------hcC-------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhh-hhhhHHHHHhccchhhhhhhhhhh
Confidence                   222       12555556666555555555566777654322111110 000000000000000000   000


Q ss_pred             ccccccc-ccch-hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 013453          273 TPKKSLL-KNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (442)
Q Consensus       273 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (442)
                      ...++.. +++. +........+..........++|.|+.     +++|++..+.+.+.....++.+++.+ ...++.||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr  300 (405)
T TIGR00891       227 AAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLK-----ADLGLSPHTVANIVVFSNIGAIVGGC-VFGFLGDW  300 (405)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-----HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            0011111 1111 112222222223333334445555543     23688999999999999999999988 66777888


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHH
Q 013453          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL  430 (442)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  430 (442)
                      ++||+.+..+.....+........    ....+.. .....+.++......+.....+.|..|+++|+++.|+.+...++
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  375 (405)
T TIGR00891       301 LGRRKAYVCSLLAGQLLIIPVFAI----GANVAVL-GLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL  375 (405)
T ss_pred             hCchhhhHHHHHHHHHHHHHHHHh----CCchHHH-HHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH
Confidence            899888777665543332222111    1122221 22212223333444556677888999999999999999999999


Q ss_pred             HHhhhcccCCCC
Q 013453          431 FKAAGPAGGGAL  442 (442)
Q Consensus       431 g~~~gp~i~G~l  442 (442)
                      |..++|.+.|++
T Consensus       376 g~~~g~~~~g~l  387 (405)
T TIGR00891       376 GGALAPIIGALL  387 (405)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=5.3e-34  Score=268.96  Aligned_cols=365  Identities=15%  Similarity=0.115  Sum_probs=251.9

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      ......+..++..++...+.+.+|.+.+++|.+..+      .|++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            334556666777777778888999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccC
Q 013453          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (442)
Q Consensus       122 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (442)
                      .+++.++++++++++.+++.|++.|++.|...+ ..+++.|++|+++|++++++.+.+.++|..++|.+++.+.+     
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~-----  172 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL-----  172 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            999999999999999999999999998887777 58999999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccc-c-cc
Q 013453          201 PNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-KS  277 (442)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~  277 (442)
                        .+         +||..+.+.+++.++. ++..+++||+|++...++..+.+. +. ++.. ++.+.++.+... . ..
T Consensus       173 --~~---------gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~  238 (434)
T PRK11663        173 --HY---------GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-DA-LELA-QQQEGAGLSRKEILTKY  238 (434)
T ss_pred             --cc---------cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-cc-cccc-hhccccCCChhhhHHHH
Confidence              34         4555556666655544 344556787665432111100000 00 0000 000000000011 1 12


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh--ch-h
Q 013453          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GP-I  354 (442)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  354 (442)
                      .++++.++...+..++..........++|.|+..     .+|++..+.+...+...++..++++ +.+++.||+  ++ +
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-----~~g~s~~~a~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~r~  312 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSE-----TLGVDLVTANSAVSMFELGGFIGAL-VAGWGSDKLFNGNRG  312 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhccCCcc
Confidence            5677888887777766666666677777877643     2688999999999999999999998 666666665  22 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhh
Q 013453          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (442)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (442)
                      ...........+....+.....  . .... .....+..+++..+..........|..|++.|+++.|+.++..++|.++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  388 (434)
T PRK11663        313 PMNLIFAAGILLSVGSLWLMPF--A-SYVM-QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL  388 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc--c-cHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH
Confidence            2222211111111111111111  1 1111 1111121222222222233456678899999999999999999999999


Q ss_pred             hcccCCC
Q 013453          435 GPAGGGA  441 (442)
Q Consensus       435 gp~i~G~  441 (442)
                      +|.+.|+
T Consensus       389 ~p~~~g~  395 (434)
T PRK11663        389 SGYPLAK  395 (434)
T ss_pred             hcccHHH
Confidence            9999875

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=3.9e-34  Score=268.15  Aligned_cols=361  Identities=17%  Similarity=0.126  Sum_probs=260.1

Q ss_pred             HHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHh
Q 013453           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (442)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~  130 (442)
                      ++..++...+....|.+.+++|.+..+      .+++.+++.++..++.++.|+++||+|||+++..+.++..++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            455667777888889999999999999      99999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCccccccc
Q 013453          131 LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  209 (442)
Q Consensus       131 ~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~  209 (442)
                      ++++++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+...++|..++|.+++.+.+              
T Consensus        78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------------  143 (399)
T TIGR00893        78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI--------------  143 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--------------
Confidence            999999999999999999888888 59999999999999999999999999999999999999887              


Q ss_pred             ccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHH
Q 013453          210 FGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI  288 (442)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (442)
                        ..+|+..+.+.++..++..+ ..+..||++++.+..+++++....+....+.+.++++++.....++.+++|+++...
T Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (399)
T TIGR00893       144 --HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLA  221 (399)
T ss_pred             --hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHH
Confidence              34455555766666655544 344556655432221111111000000000011111222334566788899998888


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHH-HHHHHHHHHHH
Q 013453          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV-ARIAGVLTIPL  367 (442)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  367 (442)
                      +..++..........+.+.|....     ++.+..+.+.......++.+++.+ ...++.||.+||+. .........+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       222 LGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGMI-LGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHH
Confidence            888888887777777888776533     688899999999998999999988 66667777777641 11111111111


Q ss_pred             ---HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          368 ---LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       368 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                         .......... ....+. . ......+....+..+....+..|..|+++|+++.|+.+...++|..++|.+.|++
T Consensus       296 ~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l  370 (399)
T TIGR00893       296 GLVLSLLMFATNY-VNIPYA-A-LALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI  370 (399)
T ss_pred             HHHHHHHHHHhcc-chhHHH-H-HHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence               1111111110 111111 1 1122222233346788889999999999999999999999999999999998864

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=4.5e-34  Score=264.63  Aligned_cols=349  Identities=16%  Similarity=0.094  Sum_probs=264.2

Q ss_pred             HHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHH
Q 013453           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (442)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~  125 (442)
                      ++...++..++.....+.+|.+.++++.++.+      .+++.+++.++..++++++|+++||+|||++++.+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence            45677778888888899999999999999998      999999999999999999999999999999999999999999


Q ss_pred             HHHHhccc-----hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccccc
Q 013453          126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (442)
Q Consensus       126 ~~~~~~a~-----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (442)
                      .++.++++     +++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  153 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA----  153 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence            88888877     999999999999999999888 49999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccc
Q 013453          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (442)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (442)
                                  ..+|+..+.+.++..++..+..+.++++++.++++++.+++.              .++.....++++
T Consensus       154 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  207 (365)
T TIGR00900       154 ------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL  207 (365)
T ss_pred             ------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence                        344555556666555554444333332211111111100000              000112345677


Q ss_pred             ccchhHHHHHHHHHHHHHHhhHH-HHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      |+|.++...+..++......... .+.|.+....     +|.+..+.+......+++.+++.+ ...+++||.+|++...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMT  281 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHH
Confidence            88888877777666666555554 5566655422     588899999999999999999988 6668888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      .+.....+......+...    ..+ ...+..+..++......+....+..|..|+++|+++.|+.++..+++..++|.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~  356 (365)
T TIGR00900       282 GAIFVIGLAILVVGLTPP----NFP-LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL  356 (365)
T ss_pred             HHHHHHHHHHHHHHhhch----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666655555444321    122 233333444445555667788889999999999999999999999999999998


Q ss_pred             CCC
Q 013453          439 GGA  441 (442)
Q Consensus       439 ~G~  441 (442)
                      .|+
T Consensus       357 ~g~  359 (365)
T TIGR00900       357 AGP  359 (365)
T ss_pred             HHH
Confidence            875

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=263.62  Aligned_cols=342  Identities=15%  Similarity=0.112  Sum_probs=245.6

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +..++.+.+..++.........+.+|.+.+++|.+..+      .|++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            33444555555554444445566789999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ++..++++.+++++|++.+++.|+++|++.+...+ ..+++.|++|+++|++++++...+.++|..++|++++.+.+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---  158 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---  158 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---
Confidence            99999999999999999999999999999888877 58999999999999999999999999999999999999987   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (442)
                          .+|         ||..+.+.+++.++..+ ....+||++++++   +   .                   .+..++
T Consensus       159 ----~~g---------w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---~---~-------------------~~~~~~  200 (390)
T PRK03545        159 ----YLG---------WRTTFLAIGGGALITLLLLIKLLPLLPSEHS---G---S-------------------LKSLPL  200 (390)
T ss_pred             ----Hhc---------HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---c---h-------------------HHHHHH
Confidence                344         45555776666655543 3344565432110   0   0                   012345


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHH
Q 013453          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (442)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (442)
                      .+|+|.++......++..........+.+.++.     +..|++..+.+......+++.+++++ ..+++.||.+++...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~  274 (390)
T PRK03545        201 LFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQ-----QVAGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLL  274 (390)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence            778888776655555544444444445554443     23688889999999999999999998 666677777776543


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcc
Q 013453          358 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  437 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~  437 (442)
                       .+..+.......+....   + ..+. .....++.+.......+.......+..| +.|+++.|+.+...++|..+||.
T Consensus       275 -~~~~~~~~~~~~l~~~~---~-~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~  347 (390)
T PRK03545        275 -IAIALLLVCLLLLLPAA---N-SEWH-LSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGAL  347 (390)
T ss_pred             -HHHHHHHHHHHHHHHHh---c-hHHH-HHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence             33333333332222111   1 1222 2222333333333344555566667665 68899999999999999999999


Q ss_pred             cCCC
Q 013453          438 GGGA  441 (442)
Q Consensus       438 i~G~  441 (442)
                      +.|+
T Consensus       348 ~~G~  351 (390)
T PRK03545        348 LGNQ  351 (390)
T ss_pred             HHHH
Confidence            8875

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=248.28  Aligned_cols=364  Identities=38%  Similarity=0.595  Sum_probs=263.5

Q ss_pred             hhhchhHHHHHHHhcccccchh--hhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH
Q 013453           58 SSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (442)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~  135 (442)
                      +...+......++|+.-..+.+  ...+.|.+.+.+.+.+.+.++.+|.++||+|||++++++++..++...+.+++.|+
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F  121 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF  121 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566666777766554444  56679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcC
Q 013453          136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (442)
                      ..++++|++.|+..|...++.++++|.+++|+|+++++..+.+.++|.++||.+|+++.+..          ...+.+++
T Consensus       122 ~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~----------~~~g~~p~  191 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS----------SISGSYPF  191 (451)
T ss_pred             HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH----------hhhccCch
Confidence            77777799999999999999999999999999999999999999999999999999998711          11225566


Q ss_pred             hhHHHHHHHHHHH-HHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHH
Q 013453          216 FLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (442)
Q Consensus       216 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (442)
                      ..|.++..+.+.. .....+++||+-+.++++++. ..    ..+..+++++..+.........+||++..........+
T Consensus       192 alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~-~~----~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~  266 (451)
T KOG2615|consen  192 ALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEH-ST----LQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIF  266 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCccccchhhcccc-cc----hhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHH
Confidence            6666655555555 455678899987655444111 11    11111111111111111223355666665555566666


Q ss_pred             HHHHhhHHHHHHHHhcCCccc--CcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhH-HHHHHHHHHHHHHHHH
Q 013453          295 SLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGVLTIPLLTSY  371 (442)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  371 (442)
                      ....+.+...++.|..+....  +++|+++.+.|.+++..++.+.+.+....+++.+..+... .+......+...++++
T Consensus       267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll  346 (451)
T KOG2615|consen  267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL  346 (451)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            666666666676666555433  6799999999999999999999988877776665544322 3333333333333333


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          372 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                      ...      .....+.....+..+......+....++.+..|+++||+++|+..+.+.++.++||.+.|.+
T Consensus       347 s~~------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  347 SLA------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             hcc------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            222      12234555555566667777888899999999999999999999999999999999999853

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=2.5e-33  Score=263.19  Aligned_cols=351  Identities=18%  Similarity=0.133  Sum_probs=259.1

Q ss_pred             CChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 013453           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (442)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (442)
                      +++..+...++..+++.++.....+..|.+.+++|.++++      .+++.+.+.++..+++++.|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            3344556677788888999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +.++..++.++++++++++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..+++.+++.+.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  164 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-  164 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            9999999999999999999999999999999888887 58999999999999999999999999999999999988876 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccc
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (442)
                                     ..+|+..+.+.+++.++.. +...++||++++.++++++.++.  .                 ..
T Consensus       165 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~-----------------~~  210 (406)
T PRK11551        165 ---------------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA--P-----------------VL  210 (406)
T ss_pred             ---------------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh--h-----------------hH
Confidence                           3445555566655544443 34556788765422211100000  0                 00


Q ss_pred             ccccc---cchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 013453          276 KSLLK---NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (442)
Q Consensus       276 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (442)
                      +..++   .+..+...+..++..........+.|.+..      +.|+++.+.+.......++.+++++ ..+++.||.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g  283 (406)
T PRK11551        211 RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLV------GQGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLR  283 (406)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            01111   122223333333333334444455665543      2588899999999999999999988 6666777889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHH
Q 013453          353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK  432 (442)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  432 (442)
                      +++.+..+.....+++..+....     ..+. ..+..++.++...+..+....+..|.+|+++|+++.|+.+....+|.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  357 (406)
T PRK11551        284 PRRVVLLIYAGILASLAALAAAP-----SFAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS  357 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-----cHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence            88887776555555544433321     1122 22233333444445667778888999999999999999999999999


Q ss_pred             hhhcccCCCC
Q 013453          433 AAGPAGGGAL  442 (442)
Q Consensus       433 ~~gp~i~G~l  442 (442)
                      .++|.+.|++
T Consensus       358 ~~g~~~~g~l  367 (406)
T PRK11551        358 MAGPLLAGQL  367 (406)
T ss_pred             HHHhhhHhhh
Confidence            9999999864

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=2.1e-33  Score=270.12  Aligned_cols=370  Identities=14%  Similarity=0.153  Sum_probs=273.1

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      .+..+++..++..++.....+.+|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            345677788888899999999999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccC
Q 013453          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (442)
Q Consensus       122 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (442)
                      ..++.+++++++|++.+++.|+++|++.+...+ ..+++.|++|+++|++++++...+..+|..+||.+++++.+     
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  151 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-----  151 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-----
Confidence            999999999999999999999999999888887 59999999999999999999999999999999999999988     


Q ss_pred             CCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhh---------hhhhh----hhhh---
Q 013453          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSY---------DALES----ASAE---  263 (442)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~----~~~~---  263 (442)
                        ..|||+.|         ++.+.+.++.. +..+..||+++..+++.+......         ....+    ...+   
T Consensus       152 --~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (485)
T TIGR00711       152 --NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE  220 (485)
T ss_pred             --CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence              56666555         55554444443 334456664432222111100000         00000    0000   


Q ss_pred             ----------------hhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHH
Q 013453          264 ----------------VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (442)
Q Consensus       264 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (442)
                                      .++.+++++....+++++|+++...+..++..........+.|.|+...     +|+++.+.+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~  295 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGL  295 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHH
Confidence                            0111122233345678899988888877777777777777788777643     6889999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013453          328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIL  407 (442)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (442)
                      ......++.+++.+ +.+++.||.+||+....+..+..++..++.+.... +...+. ......+.+.+.....+.....
T Consensus       296 ~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~g~g~~~~~~~~~~~  372 (485)
T TIGR00711       296 HILPVGLAPMLSSP-IAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP-DTPFLA-IALPQFIRGFGMGCFFMPLTTI  372 (485)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988 66667788899988888777666666554421111 111222 2222222333333334445555


Q ss_pred             hcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          408 QNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       408 ~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ..+..|+++++++.|+.++.+++|+.+|+.+.|.
T Consensus       373 ~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  406 (485)
T TIGR00711       373 ALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT  406 (485)
T ss_pred             HHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667899999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1e-33  Score=267.50  Aligned_cols=360  Identities=15%  Similarity=0.214  Sum_probs=254.2

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      +++.+...++..+.+.++.....+..|.+.+++|.++.+      .+++.+.+.+++.+++++.|+++||+|||+++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            345566777888888899999999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      .++.+++.++++++++++.+++.|+++|++.+...+ ...++.|++|+|+|+++.++...+.++|.++++.+.+.+.+  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~--  167 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE--  167 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc--
Confidence            999999999999999999999999999999888777 58999999999999999999999999999999999988887  


Q ss_pred             ccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccc
Q 013453          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (442)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (442)
                           ..|         ||..+.+..+..++........||++++.+++.+..          .++.++..+......++
T Consensus       168 -----~~~---------w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  223 (426)
T PRK12307        168 -----AYG---------WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK----------GKHSQSAWSVFSLSMKG  223 (426)
T ss_pred             -----cCC---------HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc----------ccccccchhhhhHHHHH
Confidence                 344         444445543333322222223344432111100000          00000000011124566


Q ss_pred             ccccchhHHHHHHHHHHHH---HHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchh
Q 013453          278 LLKNWPLMSSIIVYCVFSL---HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (442)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (442)
                      +++++.++...........   .......++|.|...      .|+++.+.+...+...++.+++++ ..+++.||++||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~  296 (426)
T PRK12307        224 LFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLK  296 (426)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccH
Confidence            7888877654443332222   222244556665542      478888999988888999999988 677778888998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhh
Q 013453          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (442)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (442)
                      +....+..+..+....+.....  . ... ......+..+....+..+.....+.|.+|++.||++.|+.+...++++.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~  372 (426)
T PRK12307        297 KTFSIGLLMSFLFIFPLFRIPQ--D-NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF  372 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc--c-cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH
Confidence            8887777666555443332211  1 111 11111111111112233445567789999999999999999999999999


Q ss_pred             hcccCCC
Q 013453          435 GPAGGGA  441 (442)
Q Consensus       435 gp~i~G~  441 (442)
                      +|.+.|+
T Consensus       373 gp~~~g~  379 (426)
T PRK12307        373 NSMAATW  379 (426)
T ss_pred             HHHHHHH
Confidence            9998775

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.2e-33  Score=263.65  Aligned_cols=358  Identities=13%  Similarity=0.073  Sum_probs=239.1

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcc---cccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (442)
                      +.+...+++.+++.++...+....|.+.++++.   +..+   ....+.+.+...++..++++++|+++||+|||+++..
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            334456677889999999999999999999863   3332   0013334455556666999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHH--------HHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHH
Q 013453          118 GTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (442)
                      +.++++++++++++++++.        .+++.|+++|++.|...| ..++++|++|+++|++..+..+.+...|..+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998864        589999999999998888 5999999999999999999998888888888887


Q ss_pred             hhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhh
Q 013453          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (442)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (442)
                      +...+.....       ... ...++||.+|.+.++++++.......+||++++++++                      
T Consensus       179 ~~~~~~~~~~-------~~~-~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~----------------------  228 (432)
T PRK10406        179 VVVVLQQTLE-------DAE-LREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA----------------------  228 (432)
T ss_pred             HHHHHHHhCC-------HHH-HhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh----------------------
Confidence            7655542100       000 0035677777877777766555555566654321100                      


Q ss_pred             cccccccccccccchhHHHHHHHHHH-HHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013453          269 GREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (442)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (442)
                      .++..+.++++|+++.+...+...+. ......+..+.|.|+..     .+|++..+.+.......+...+++. +.+++
T Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-----~~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l  302 (432)
T PRK10406        229 LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVN-----TAGMHANVASGIMTAALFVFMLIQP-LIGAL  302 (432)
T ss_pred             hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            00112456678888777655554433 44455566677776643     2578888888888887888888877 55678


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHH
Q 013453          348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG  427 (442)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  427 (442)
                      .||.+||+.......+..+....+........ .......+. ....+......+....+.+|.+|++.|+++.|+.+..
T Consensus       303 ~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        303 SDKIGRRTSMLCFGSLAALFTVPILSALQNVS-SPYAAFGLV-MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            88889888776655443333221111111111 111111111 1111112222344667788999999999999999887


Q ss_pred             HHH-HHhhhcccC
Q 013453          428 MSL-FKAAGPAGG  439 (442)
Q Consensus       428 ~~~-g~~~gp~i~  439 (442)
                      .+. .+...|.+.
T Consensus       381 g~~~~g~~~p~~~  393 (432)
T PRK10406        381 ANALFGGSAEYVA  393 (432)
T ss_pred             HHHHHHhHHHHHH
Confidence            664 244455544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=5.3e-33  Score=265.98  Aligned_cols=373  Identities=13%  Similarity=0.071  Sum_probs=243.4

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHH-HHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +.+...+++.+++.++...+....|.+.++++.+.++.. +....+ +.++..+++.++++++|+++||+|||+++.++.
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV-QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            445567789999999999999999999999976554311 111111 257888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHH--------HHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh
Q 013453          120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~--------l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                      ++++++++++++++|+++        +++.|+++|++.|...+ ..++++|++|+++|++..++...+..+|..+|+.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        89999999999888877 599999999999999999999988888888888776


Q ss_pred             hhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcc
Q 013453          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (442)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (442)
                      ..+......       .. ...++||.++++.++++++.++....+||+|++.+.+++.++.        .++.  .+++
T Consensus       175 ~~~~~~~~~-------~~-~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~--------~~~~--~~~~  236 (490)
T PRK10642        175 VLISTIVGE-------AN-FLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQG--------DREG--LQDG  236 (490)
T ss_pred             HHHHHhcCH-------HH-hcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhh--------cccc--cccc
Confidence            655421100       00 0045677777777666665555566788887643211100000        0000  0001


Q ss_pred             ccccccccccc-chhHH-HHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 013453          271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (442)
Q Consensus       271 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (442)
                      .+.++++++++ ++.+. .....++..........+.|.|+..     .+|++..+.+.......++.+++.+ +.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-----~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~  310 (490)
T PRK10642        237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH-----NLHYSEDHGVLIIIAIMIGMLFVQP-VMGLLS  310 (490)
T ss_pred             ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            12234445543 22222 2222233334455555677766643     2577777777777777777888877 677788


Q ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHH
Q 013453          349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  428 (442)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  428 (442)
                      ||+|||+.+..+.+...+..........  ...... +....++.++..............+.+|++.|+++.|+.+...
T Consensus       311 dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~  387 (490)
T PRK10642        311 DRFGRRPFVILGSVALFVLAIPAFILIN--SNVIGL-IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNIS  387 (490)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHh--CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHH
Confidence            8889999877766543332222111111  111111 1111122222222233445566678899999999999876667


Q ss_pred             HHHHhhhcccCCC
Q 013453          429 SLFKAAGPAGGGA  441 (442)
Q Consensus       429 ~~g~~~gp~i~G~  441 (442)
                      .+++.++|.+.|+
T Consensus       388 ~~~g~~~p~i~g~  400 (490)
T PRK10642        388 VLVAGLTPTLAAW  400 (490)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777888887664

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.7e-32  Score=253.66  Aligned_cols=343  Identities=18%  Similarity=0.174  Sum_probs=244.4

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .|+.++.+....+..........+.+|.+.+++|.++++      .++..+++.++..+++++.|+++||+|||++++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~   91 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF   91 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence            455555555555555555556667889999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      .++.+++.++++++++++.+++.|+++|++.+...+ ..+++.|++|+|+|++++++...+.++|..++|.+++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--  169 (394)
T PRK10213         92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--  169 (394)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            999999999999999999999999999999888888 58999999999999999999999999999999999999998  


Q ss_pred             ccCCCcccccccccCCcChhHHHHHHHHHHHHHHH-HhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccc
Q 013453          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (442)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (442)
                           .+|         ||..+.+.+++.++..+. ...+||+++++++                         .....+
T Consensus       170 -----~~g---------w~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~-------------------------~~~~~~  210 (394)
T PRK10213        170 -----LIG---------WRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH-------------------------QKQNTF  210 (394)
T ss_pred             -----hcC---------HHHHHHHHHHHHHHHHHHHHHHCCCCCccccc-------------------------chhHHH
Confidence                 444         444446666555544332 3345664321100                         001134


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHH-HHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (442)
                      +.+++|.++...+..++..........+. |.+.      +++|+++.+.+......+++.+++.. ..+++.||.+++.
T Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~g~s~~~~g~~~~~~~~~~iig~~-~~~~l~~r~~~~~  283 (394)
T PRK10213        211 RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYM------NLAGFGVDGLTLVLLSFGIASFVGTS-LSSFILKRSVKLA  283 (394)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhccchhH
Confidence            56788888876666555555444444444 3333      23588999999999999999999987 5566666644333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhh
Q 013453          356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  435 (442)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  435 (442)
                      ............+.+.....     ..+... ...++.+.......+...+.+.+..| ++++++.++.....++|..+|
T Consensus       284 l~~~~~~~~~~~~~l~~~~~-----~~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G  356 (394)
T PRK10213        284 LAGAPLVLAVSALVLTLWGS-----DKIVAT-GVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCG  356 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-----hHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHH
Confidence            33332222222223222211     222222 23333344444555666667777777 557788888888889999999


Q ss_pred             cccCCCC
Q 013453          436 PAGGGAL  442 (442)
Q Consensus       436 p~i~G~l  442 (442)
                      |.++|++
T Consensus       357 ~~l~G~l  363 (394)
T PRK10213        357 AAIGGYA  363 (394)
T ss_pred             HHHHHHH
Confidence            9888753

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=4.4e-33  Score=259.17  Aligned_cols=337  Identities=12%  Similarity=0.076  Sum_probs=245.6

Q ss_pred             hHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc
Q 013453           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (442)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a  132 (442)
                      .........+..|.+.+++|.++.+      .|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~   88 (377)
T TIGR00890        15 TSGYVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA   88 (377)
T ss_pred             HhhHHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence            3333556778899999999999999      9999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCccccccccc
Q 013453          133 VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFG  211 (442)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~  211 (442)
                      ++++.+++.|++.|++.+...+ ....+.|++| |+|+++.++...+.++|..+++++.+.+.+                
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------  151 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN----------------  151 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh----------------
Confidence            9999999999999999887766 5778888887 679999999999999999887777777765                


Q ss_pred             CCcChhHHHHHHHHHHHHHHH-HhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHH
Q 013453          212 KFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  290 (442)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (442)
                      ..+||..+.+.++..++..+. .++++|++++..+++++.+                  +.....++.++++.++...+.
T Consensus       152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  213 (377)
T TIGR00890       152 LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQFWVLYLS  213 (377)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccc------------------hhhhhHHHHHcCccHHHHHHH
Confidence            344555557777766665443 4445554332111110000                  001123456788888776666


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 013453          291 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  370 (442)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (442)
                      .++..........+.+.+.      ++++.+..+.+.......++.+++++ ..+++.||++||+.+..+.....++...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~  286 (377)
T TIGR00890       214 FFLNAVSGLLLIGLYKPYG------QSLGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGISAVGMAA  286 (377)
T ss_pred             HHHHhHHHHHHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            5555444444444444432      23577888889999999999999988 6677778889998888777777666655


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          371 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +......   .... ........+.......+....+..|.+|+++|+++.|+.+...++|..++|.+.|.
T Consensus       287 ~~~~~~~---~~~~-~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~  353 (377)
T TIGR00890       287 MLFIPML---NDVL-FLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASH  353 (377)
T ss_pred             HHHcccc---hhHH-HHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence            5443211   1111 11111222222223344556778899999999999999999999999999988764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=2e-33  Score=261.64  Aligned_cols=362  Identities=15%  Similarity=0.118  Sum_probs=251.9

Q ss_pred             HHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHH
Q 013453           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (442)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  128 (442)
                      ..+..........+..|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            34566677788888999999999999999      999999999999999999999999999999999999999999999


Q ss_pred             HhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHH-HhhhhhccccccCCCcccc
Q 013453          129 FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS  206 (442)
Q Consensus       129 ~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~~~~~~~~gw  206 (442)
                      ++++++++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..++| .+++.+.+       ..+ 
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~-  148 (379)
T TIGR00881        77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-------LYS-  148 (379)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-------cCC-
Confidence            99999999999999999999888877 589999999999999999999999999999999 56666665       334 


Q ss_pred             cccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhH
Q 013453          207 ESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (442)
                              |+..+.+.+++.++. ++..++.||+++..+.++++++.. ++.++..++.+++.++.+...++++++|.++
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (379)
T TIGR00881       149 --------WHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLW  219 (379)
T ss_pred             --------chhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHH
Confidence                    444446666555444 444556676654322211111100 0000000000011111122345677888888


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-chhHHHHHHHHHH
Q 013453          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLT  364 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  364 (442)
                      ...+..++..........+.+.|..+     .+|+++.+.+.......++.+++.+ +..++.||. ++++.........
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~  293 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQ-----EKGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLFNGRRGPLAVFFMA  293 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHcCCcchHHHHHHHH
Confidence            88877777777777777777777653     3688999999999999999999988 555555543 3333222111111


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          365 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      .....+...... .. ..........+..+....+..+.......|..|++.|+++.|+.+...++|+.++|.+.|.
T Consensus       294 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  368 (379)
T TIGR00881       294 LIIVSLLVYWLN-PA-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGY  368 (379)
T ss_pred             HHHHHHHHHhcC-cc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence            111111111110 01 1111122222223333334445556778899999999999999999999999999998875

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.6e-32  Score=252.94  Aligned_cols=346  Identities=25%  Similarity=0.362  Sum_probs=255.5

Q ss_pred             HHHHHHhHhcchhhchhHH-HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHH
Q 013453           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~  125 (442)
                      ++..++..++.....+.+| .+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~   75 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG   75 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence            5667788888888999999 889999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcc
Q 013453          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (442)
Q Consensus       126 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (442)
                      .++..++++.+.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+       ..
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~  148 (352)
T PF07690_consen   76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-------YF  148 (352)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HC
T ss_pred             HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-------cc
Confidence            76666768888999999999999988888 59999999999999999999999999999999999999997       44


Q ss_pred             cccccccCCcChhHHHHHHHHHHHHHHH-HhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccc-ccccccccc
Q 013453          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNW  282 (442)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  282 (442)
                      ||         +..+.+.+++.++..+. ..++++++++++.+++++++             ++++++.. .++.+++++
T Consensus       149 ~~---------~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  206 (352)
T PF07690_consen  149 GW---------RWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNP  206 (352)
T ss_dssp             HH---------CCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHH
T ss_pred             cc---------ccccccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccc
Confidence            44         44447777777666543 35555555443332221110             00111122 366677777


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCC-hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                      .+|...+..++..........+.+.|..     +.+|++ ..+.+......++...++.. +.+++.||.++++......
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~  280 (352)
T PF07690_consen  207 VLWILLIAFFLFFFVFSGFSFFLPLYLQ-----EVLGFSGPSQAGLLFSIFGIVGIIGSL-LAGRLSDRFGRRRRLLIAI  280 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHCCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHhhcccchhhh-----hccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHH
Confidence            7775555555555566666677776643     336888 78999999999999999888 5555667777766665555


Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhc
Q 013453          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  436 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp  436 (442)
                      ....+....+....... ...+  ......+.+.......+....+..+..|++++|++.|+.++..++|+.+||
T Consensus       281 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  281 LLLILGALGLLLLPFSS-SPVW--LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHCCSHHHC-HHHH--HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55555444443332221 1111  222333344455556788899999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=9.8e-32  Score=250.85  Aligned_cols=349  Identities=16%  Similarity=0.133  Sum_probs=255.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      +..+.+....++...+.....+..|.+.+++|.++++      .+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~   78 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLF   78 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            3444555556667778888899999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccccc
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (442)
                      +..++.++++++++++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+....+|..++|.+++.+.+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----  154 (385)
T TIGR00710        79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV----  154 (385)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            9999999999999999999999999999888877 59999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccc
Q 013453          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (442)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (442)
                                  ..+|+..+.+.++..++..+ ..+..||+++.+++++  .++                  ..+..++.
T Consensus       155 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~  202 (385)
T TIGR00710       155 ------------WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ--IST------------------YFETFLLL  202 (385)
T ss_pred             ------------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC--HHH------------------HHHHHHHH
Confidence                        34455555666665555443 3445666543321110  000                  01124556


Q ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      +++|+++...+...+..........+.|.++.     +.+|+++.+.+.+.....++.+++.+ ..+++.||.++++...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYI-----DIMGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHH
Confidence            78888877766665555555555445555443     23688999999999998999999988 6666777889888887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      .+.....+...++........ ..+........+.+.......+.......|..| ++++++.++.+.....++.+.+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~  354 (385)
T TIGR00710       277 MGLILFAVSAVLLEITAILGL-GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL  354 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            776666666555444322111 122222222333333344455666666777666 689999999998887655554444


Q ss_pred             C
Q 013453          439 G  439 (442)
Q Consensus       439 ~  439 (442)
                      .
T Consensus       355 ~  355 (385)
T TIGR00710       355 V  355 (385)
T ss_pred             H
Confidence            3

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=8.9e-32  Score=257.43  Aligned_cols=370  Identities=15%  Similarity=0.124  Sum_probs=267.8

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      .+.++.+++..++..++.....+.+|.+.+++|.+..+      .+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   82 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            44567788888888989899999999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ++.+++.++++++++++.+++.|+++|++.+...| ..+++.|++|+++|+++.+......++|..+||.+++.+.+   
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---  159 (471)
T PRK10504         83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---  159 (471)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---
Confidence            99999999999999999999999999999998888 58899999999999999999999999999999999999998   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhh---------hhhhhhh------
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYD---------ALESASA------  262 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~------  262 (442)
                          ..||         +..+.+......+..+ .....|+.+.... +.+.......         ..+....      
T Consensus       160 ----~~gw---------~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (471)
T PRK10504        160 ----YASW---------HWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPL  225 (471)
T ss_pred             ----hccH---------HHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence                3444         4444665554444433 3344454332211 1111000000         0000000      


Q ss_pred             ----------------hhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHH
Q 013453          263 ----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (442)
Q Consensus       263 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (442)
                                      ..+++..+++....+++|||+++...+..++..........+.|.|...     ..|.++.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~g  300 (471)
T PRK10504        226 AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQI-----GLGFSPFHAG  300 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHH
Confidence                            0011111122223457899998888777777766665555666666543     2588899999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 013453          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFI  406 (442)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (442)
                      +......++.+++.. +.+++.||+++|+.+..+..+..+...++.+.....  ..+. ........+.......+....
T Consensus       301 ~~~~~~~~~~~~~~~-~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~~~~~~~~~~~~  376 (471)
T PRK10504        301 LMMIPMVLGSMGMKR-IVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG--WYYL-LPFVLFLQGMVNSTRFSSMNT  376 (471)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc--cHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            998888888877777 566677888999988887776666655544432111  1111 111222222333344556667


Q ss_pred             hhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          407 LQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       407 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ...+.+|++.+++++|+.++...+|..+||.+.|.
T Consensus       377 ~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  411 (471)
T PRK10504        377 LTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGL  411 (471)
T ss_pred             HHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            77788999999999999999999999999988774

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=8.9e-32  Score=250.49  Aligned_cols=325  Identities=12%  Similarity=0.039  Sum_probs=239.1

Q ss_pred             hhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHH
Q 013453           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (442)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~  137 (442)
                      ....+.+|.+.+|+|.|.++      .+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence            66779999999999999999      999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcCh
Q 013453          138 AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (442)
Q Consensus       138 l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (442)
                      +++.|+++|++.+...+ ...++.|++| ++|+++++.+..+..+|..+++.+++++.+.      ..+||+        
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w~~--------  164 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETWYQ--------  164 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHH--------
Confidence            99999999999998877 4888999987 7899999999999999999999999988861      124443        


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHH
Q 013453          217 LPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (442)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (442)
                       .+...++..++.....+...+.+++.+++                        ++...++.+++++.+...+..++...
T Consensus       165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        165 -TLAWWALPAVVALFAWWWQSAREVASSHK------------------------TTTTPVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCCccccC------------------------CCcCCcccccCHhHHHHHHHHHHHHH
Confidence             33433333333333222222111110000                        00112345677777776666666666


Q ss_pred             HHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 013453          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (442)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (442)
                      .......+.|.++.+      +|++..+++...+..+++.+++++ ..+++.||.++++....+..+..++..++...+.
T Consensus       220 ~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~  292 (393)
T PRK09705        220 GYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL  292 (393)
T ss_pred             HHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc
Confidence            666677777777642      588999999999999999999998 6777888889988888777666665554433221


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccC-ChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          377 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                        . .......+    .+.......+.......+.. |++++++..|+.+...+++..++|.+.|++
T Consensus       293 --~-~~~~~~~l----~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        293 --Q-LPVLWAMV----CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             --h-HHHHHHHH----HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1 11111111    11222233344444444545 568899999999999999999999988753

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=9.1e-32  Score=253.74  Aligned_cols=367  Identities=14%  Similarity=0.097  Sum_probs=239.2

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHH-HHHHh--cccccchhhhhH-HHHHHHHHHHHHHhhhhhhhhhhcccCCchhh
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~  115 (442)
                      ++.+....+..+++.++...+....|. +.+++  +.++.+   +.. .....++..+++.+++++.|+++||+|||+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            344556677888899998888877775 45555  455432   111 11223456677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchHH--------HHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHH
Q 013453          116 IMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (442)
Q Consensus       116 ~~~~~~~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  186 (442)
                      ..+.++++++++++++++++.        .+++.|+++|++.|...+ +..++.|++|+|+|++..+..+.+..+|..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        588999999999998887 58999999999999999999999999999998


Q ss_pred             HHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhh
Q 013453          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (442)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (442)
                      +.+...+......        ..+..++||.++.+.+++.++........||+|++.+.+++.++               
T Consensus       178 ~~~~~~l~~~~~~--------~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~---------------  234 (438)
T PRK09952        178 TGLVSLISMMTTD--------EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA---------------  234 (438)
T ss_pred             HHHHHHHHHhCCH--------HHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc---------------
Confidence            8877776531110        00114567777787776665544444456676543211100000               


Q ss_pred             hhcccccccccccccchhHHHHH-HHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHH
Q 013453          267 EEGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (442)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (442)
                      .+ ++....+.++++|+.+.... ..++..........+.+.|...     .+|++...........++...++.+ +.+
T Consensus       235 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-----~~g~s~~~~~~~~~~~g~~~~i~~~-~~g  307 (438)
T PRK09952        235 AK-KRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQ-----NLGLPRELFLNIGLLVGGLSCLTIP-CFA  307 (438)
T ss_pred             cc-ccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            00 00011123556666655443 3333344444555666666543     2567776555555555666677766 667


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHH
Q 013453          346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM  425 (442)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  425 (442)
                      ++.||++||+....+.++..++...+...... ....+. .....++.++......+..+.+..|.+|++.|+++.|+.+
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~  385 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLSAFPFFMALEA-QSIFWI-VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGY  385 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHH
Confidence            88888899988777765554433322221111 111122 2222222233333445667888999999999999999976


Q ss_pred             HHHH-HHHhhhcccCCC
Q 013453          426 TGMS-LFKAAGPAGGGA  441 (442)
Q Consensus       426 ~~~~-~g~~~gp~i~G~  441 (442)
                      .... +++.++|.+.|+
T Consensus       386 ~~~~~lgg~~~p~i~g~  402 (438)
T PRK09952        386 QVASVVGGGFTPFIAAA  402 (438)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            6654 888999988764

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=6.2e-32  Score=253.89  Aligned_cols=362  Identities=14%  Similarity=0.109  Sum_probs=261.7

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      ...+..+.+..++..+......+..|.+++++|.++.+      .|++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34556677777888888888999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---hccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          120 ASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       120 ~~~~i~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +++.++.+++   .++++++.++++|+++|+|.|...+ .++++.|+.++++|.+.+++.+....+|..++|.+++.+..
T Consensus        99 ~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~  178 (438)
T PRK10133         99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999875   5689999999999999999999888 58889998777777778999999999999999999887652


Q ss_pred             cccc-----------CCCcccccccccCCcChhHHHHHHH-HHHHHHHH-HhhccccCCCCCCCCccchhhhhhhhhhhh
Q 013453          196 PAEK-----------YPNLFSSESLFGKFPYFLPCLCISL-FAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASA  262 (442)
Q Consensus       196 ~~~~-----------~~~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  262 (442)
                      ....           .....+||+.+ ..+||.++..... ..++..+. ....||.+.++  +++ .+           
T Consensus       179 ~~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~--~~~-~~-----------  243 (438)
T PRK10133        179 SNVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--HSD-AK-----------  243 (438)
T ss_pred             cCCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--ccc-cc-----------
Confidence            1100           00012566655 4568887764333 32222222 23344422110  000 00           


Q ss_pred             hhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhh
Q 013453          263 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLS  342 (442)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (442)
                           +.+.....++++++|.++...+..+++.....+...+.+.|+.    ++.+|+++.+++.......++.+++++ 
T Consensus       244 -----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~g~s~~~ag~~~~~~~~~~~vG~~-  313 (438)
T PRK10133        244 -----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV----EEIPGMTAGFAANYLTGTMVCFFIGRF-  313 (438)
T ss_pred             -----ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence                 0001223457788998887777666666666666666665642    133699999999999999999999998 


Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHH
Q 013453          343 LYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG  422 (442)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  422 (442)
                      ..+++.||+++++.+..+..+..+.+.+..+..   .  .+  ........+++.....|..++...+..|+ +.+++.+
T Consensus       314 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~---~--~~--~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~  385 (438)
T PRK10133        314 TGTWLISRFAPHKVLAAYALIAMALCLISAFAG---G--HV--GLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSS  385 (438)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC---C--hH--HHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchh
Confidence            777788888999888887766665554443321   1  11  12223334556677888888888887764 5778888


Q ss_pred             HHHHHHHHHHhhhcccCCC
Q 013453          423 IAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       423 ~~~~~~~~g~~~gp~i~G~  441 (442)
                      +..+ ..+|+.++|.+.|.
T Consensus       386 l~~~-~~~g~~~~~~i~G~  403 (438)
T PRK10133        386 FIVM-TIIGGGIVTPVMGF  403 (438)
T ss_pred             HHhH-HhccchHHHHHHHH
Confidence            8764 55778888877664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3e-32  Score=261.74  Aligned_cols=385  Identities=14%  Similarity=0.080  Sum_probs=247.5

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhc-----ccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhh
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~  115 (442)
                      +....+.++.+.++++...+....|.+.+++.     .+..+      .+++.+.+.+++.++++++|+++||+|||+++
T Consensus        16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~   89 (502)
T TIGR00887        16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSV------SAAVNGSASIGTLAGQLFFGWLADKLGRKRVY   89 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            34446777888899999889988888876531     22333      78999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHH
Q 013453          116 IMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (442)
Q Consensus       116 ~~~~~~~~i~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (442)
                      .++.+++.++.++++++++      ++.++++|+++|++.|...+ ...++.|++|+++|++++++.+....+|..+++.
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~  169 (502)
T TIGR00887        90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI  169 (502)
T ss_pred             HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888765      78999999999999998877 6999999999999999999999999999999999


Q ss_pred             hhhhhccccccC-CCccc-----ccc--cccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccch---hhhhhh
Q 013453          189 LGGFLAQPAEKY-PNLFS-----SES--LFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD---VSYDAL  257 (442)
Q Consensus       189 ~~~~l~~~~~~~-~~~~g-----w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~  257 (442)
                      ++..+....... ....+     ++.  .. .++||.++.+.++++++.++..+++||+|++...++++++   +...+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~  248 (502)
T TIGR00887       170 VALIVLAGFKHSLEAAADEASCTGSCVPAV-DYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV  248 (502)
T ss_pred             HHHHHHHHhccccccccccccccccccchh-cccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence            988765321100 00000     000  11 3578888888888888777778899999997433222211   111111


Q ss_pred             hhhh-h-hhh---h---hhcccccccccccccc---hhHHHHHH-H---HHHHHHHhhHHHHHHHHhcCCcccCcccCCh
Q 013453          258 ESAS-A-EVK---E---EEGREATPKKSLLKNW---PLMSSIIV-Y---CVFSLHDMAYSEIFSLWANSPKKLGGLNYST  322 (442)
Q Consensus       258 ~~~~-~-~~~---~---~~~~~~~~~~~~~~~~---~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (442)
                      .+.. + +.+   +   +++....+++++++++   +.+...+. .   +......++...+.|.++.      +.|++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~------~~G~~~  322 (502)
T TIGR00887       249 LQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS------AIGYSP  322 (502)
T ss_pred             hccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHH------HHcCCC
Confidence            1100 0 000   0   0011112455666532   22122111 1   1111122222222333332      234443


Q ss_pred             hHHH-----------H-HHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 013453          323 QMVG-----------E-VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCAS  390 (442)
Q Consensus       323 ~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (442)
                      .+.+           . ......++.+++.+ +..++.||.|||+.+..+..+..+++.++............  .....
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~  399 (502)
T TIGR00887       323 PAATNNAYEELYKTAVGNLIIALAGTVPGYW-VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGF--LAIYV  399 (502)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHH--HHHHH
Confidence            2111           1 12223344455555 67778889999998888777666665555443211111111  11111


Q ss_pred             HHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          391 VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +...++..+..+..+.+.+|.+|++.|+++.|+.+.++.++++++|.+.|+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~  450 (502)
T TIGR00887       400 LAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLY  450 (502)
T ss_pred             HHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            111122333455667778999999999999999999999999999988765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.6e-31  Score=246.87  Aligned_cols=341  Identities=17%  Similarity=0.209  Sum_probs=243.8

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      +.++.+....++.........+.+|.+.+|+|.+..+      .|++.+.+.+++.++++++|+++||+|||+++..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence            3456677788888888889999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccccc
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (442)
                      +.+++.+++++++|++.+++.|+++|++.+...+ ...++.|++++++|++++++...+..+|..++|.+++.+.+    
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  152 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ----  152 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh----
Confidence            9999999999999999999999999999888777 48889999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccc
Q 013453          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (442)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (442)
                                  ..+||..+.+.++..++..+ ..+++||.+++.+  .+ .+                      ...+.
T Consensus       153 ------------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~--~~-~~----------------------~~~~~  195 (382)
T PRK10091        153 ------------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK--GG-LR----------------------EQFHF  195 (382)
T ss_pred             ------------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc--cC-HH----------------------HHHHH
Confidence                        33455555666665555433 3455777532110  00 00                      00124


Q ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      ++++..+.......+..........+.+.++.     +.+|+++.+.+.+....+++.+++++ ..+++.||.++++...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~  269 (382)
T PRK10091        196 LRSPAPWLIFAATMFGNAGVFAWFSYIKPYMM-----FISGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAA  269 (382)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHH
Confidence            56666665544444333333333333343333     23688999999999999999999998 6667788888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH-hhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcc
Q 013453          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  437 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~  437 (442)
                      .+..+..++..++.....    ..+........ .+....+..+ .......+..|++.++.+.  .+...++|.++||.
T Consensus       270 ~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~  342 (382)
T PRK10091        270 VTDFIIVLALLMLFFFGG----MKTASLIFAFI-CCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAY  342 (382)
T ss_pred             HHHHHHHHHHHHHHHHHh----hHHHHHHHHHH-HHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHH
Confidence            777666665544433221    11111111111 1111122222 2233444445556666553  46778899999999


Q ss_pred             cCCC
Q 013453          438 GGGA  441 (442)
Q Consensus       438 i~G~  441 (442)
                      ++|+
T Consensus       343 ~~G~  346 (382)
T PRK10091        343 CGGM  346 (382)
T ss_pred             HhHH
Confidence            8885

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.5e-31  Score=250.84  Aligned_cols=368  Identities=19%  Similarity=0.235  Sum_probs=252.3

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      ++.+....+..+...+......+..|.+.+++|.+..+      .+++.+.+.++..++.++.|+++||+|||+++..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~   89 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI   89 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence            33444555566677777777888899999999999988      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ++..++.++..++++++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..++|.+++.+.+   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---  166 (398)
T TIGR00895        90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP---  166 (398)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh---
Confidence            99999999999999999999999999999888877 59999999999999999999999999999999999999987   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHH-HHHHHHhhccccCCCCCCCCccc-hhhhhhhhhhhhhh-----hh--hhc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEV-----KE--EEG  269 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~--~~~  269 (442)
                          ..||+..+         .+.++..+ ...+...++||+++...+++++. ++..++......++     ++  .++
T Consensus       167 ----~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (398)
T TIGR00895       167 ----VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQ  233 (398)
T ss_pred             ----cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccccccccc
Confidence                45555544         55543333 33445566788765322221111 11101111000000     00  000


Q ss_pred             ccccc-cccccccc---hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHH
Q 013453          270 REATP-KKSLLKNW---PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (442)
Q Consensus       270 ~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (442)
                      +..+. .+.+++++   ..+...+..++..........+.|.+.      ++.|+++.+.+.......++.+++.+ +.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  306 (398)
T TIGR00895       234 GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM------VELGFSLSLAATGGALFNFGGVIGSI-IFG  306 (398)
T ss_pred             chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            00111 11122222   222233333333333344444454322      33688899999999999999999988 667


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHH
Q 013453          346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM  425 (442)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  425 (442)
                      ++.||.+++...... ....+...++...  ..  ..+. .....++.+.......+....+..+.+|++.|+++.|+.+
T Consensus       307 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~--~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  380 (398)
T TIGR00895       307 WLADRLGPRVTALLL-LLGAVFAVLVGST--LF--SPTL-LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI  380 (398)
T ss_pred             HHHhhcchHHHHHHH-HHHHHHHHHHHHH--hh--CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            777888887443333 3333332222221  11  1111 2223333444555666778899999999999999999999


Q ss_pred             HHHHHHHhhhcccCCCC
Q 013453          426 TGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       426 ~~~~~g~~~gp~i~G~l  442 (442)
                      ....+|.++||.+.|++
T Consensus       381 ~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       381 GIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhHHhc
Confidence            99999999999999874

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=4.5e-31  Score=247.65  Aligned_cols=349  Identities=16%  Similarity=0.113  Sum_probs=253.4

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .+.+..++..++...+.|.+|.+.+++|.+..+      .++..+.+.+++.+++++.|+++||+|||++++.+..+..+
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            455566666778888889999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCc
Q 013453          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (442)
Q Consensus       125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (442)
                      +.+++.++++++.+++.|+++|++.+...+ ..+++.|.+|+++|.+..++......+|..++|.+++.+.+       .
T Consensus        91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~  163 (406)
T PRK15402         91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------V  163 (406)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c
Confidence            999999999999999999999999888777 58899999999999999999988888999999999999987       4


Q ss_pred             ccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccc
Q 013453          204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (442)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (442)
                      .|||         ..+.+.++..++..+ ..+..||++++.+++.+ .+                  +.....++++++|
T Consensus       164 ~~w~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~  215 (406)
T PRK15402        164 LPWR---------GMFVLFAALAALSFFGLWRAMPETAGRVGEKLS-LK------------------ELGRDYKLVLKNR  215 (406)
T ss_pred             cCcc---------HHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-HH------------------HHHHHHHHHHcCc
Confidence            4444         444666665555443 33456765432211100 00                  0112345678889


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHH
Q 013453          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (442)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (442)
                      .++...+..++.......+....|.++.     +.+|+++.+.+.......++.+++.+ ..+++.||.++++....+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-----~~~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~~r~~~~~~~~~~~~  289 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILI-----SGEQLSSYEYGLLQVPVFGALIAGNL-TLARLTSRRPLRSLIRMGLW  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence            8887766666555544455455565543     23688898989887777777888877 66667778888888888777


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                      ...++..++...........+ .......+.+.......+........ .+++++|++.++.+..+.++..+|+.+.|.+
T Consensus       290 ~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        290 PMVAGLLLAALATVISSHAYL-WLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             HHHHHHHHHHHHHHcccccHH-HHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666666655543321111111 12222222222333333444443333 4458999999999999999999999887753

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=9.2e-32  Score=258.16  Aligned_cols=376  Identities=14%  Similarity=0.038  Sum_probs=244.8

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHh--------cccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCc
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK  112 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr  112 (442)
                      +..+...+..+...++...+.+..|.+.+++        +.++.+      .+++.+++.++..++++++|+++||+|||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            3444566777888888899999999999888        666677      99999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcc------------chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhh
Q 013453          113 PVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAW  179 (442)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~a------------~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~  179 (442)
                      ++++++.+++.++.++++++            +.++.+++.|+++|++.|...+ ..++++|++|+++|++++++.+.+.
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~  165 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence            99999999999998887763            2356788999999999998888 5999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchh--hhhhh
Q 013453          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDAL  257 (442)
Q Consensus       180 ~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~  257 (442)
                      .+|.++++.+++.+......       ... ..++||.++++.++..++..+..+++||+|++...+++.++.  ..++.
T Consensus       166 ~~G~~~~~~~~~~~~~~~~~-------~~~-~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~  237 (479)
T PRK10077        166 IFGQLVVYFVNYFIARSGDA-------SWL-NTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI  237 (479)
T ss_pred             HHHHHHHHHHHHHHhccCcc-------ccc-ccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHH
Confidence            99999998887766531100       000 144677777877777776666677889987653222111111  00111


Q ss_pred             hhhhh------hhhhhhcccccccccccccchhHHHHHHHHHHHHHHh----hHHHHHHHHhcCCcccCcccCChhHHHH
Q 013453          258 ESASA------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM----AYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (442)
Q Consensus       258 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (442)
                      ....+      +..+..+++....+..+... ............+...    ....+.|.+.      ++.|++....+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~------~~~g~~~~~~~~  310 (479)
T PRK10077        238 MGNTLATQALQEIKHSLDHGRKTGGKLLMFG-VGVIVIGVMLSVFQQFVGINVVLYYAPEIF------KTLGASTDIALL  310 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHhhhhhhhhcchh-HHHHHHHHHHHHHHHHhChhHHHHHHHHHH------HHcCCCCchHHH
Confidence            00000      00000000000001111100 0011111111111111    0111122222      335777666677


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013453          328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIL  407 (442)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (442)
                      .....++..+++.+ +..++.||++||+.+..+..+..++..++...........+ ......++.........+..+.+
T Consensus       311 ~~~~~~~~~~i~~~-~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  388 (479)
T PRK10077        311 QTIIVGVINLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV-ALLSMLFYVAAFAMSWGPVCWVL  388 (479)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHhccccchhHHH
Confidence            77777888888887 67778888899999988888877776665543221111111 11122222222222334667899


Q ss_pred             hcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          408 QNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       408 ~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      ++|.+|+++|+++.|+.+..++++.++++.+.
T Consensus       389 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~  420 (479)
T PRK10077        389 LSEIFPNAIRGKALAIAVAAQWIANYFVSWTF  420 (479)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998885443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=4.5e-32  Score=260.74  Aligned_cols=366  Identities=17%  Similarity=0.106  Sum_probs=245.2

Q ss_pred             HHHHHHhHhcchhhchhHHHHHHHhccc--------ccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           47 WIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .+..++..++...+.+..|.+.++++.+        ..+      .+++.+++.++..++++++|+++||+|||++++.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~  107 (481)
T TIGR00879        34 AIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLII  107 (481)
T ss_pred             HHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHH
Confidence            3344556667778888889888888887        556      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc---chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh---h
Q 013453          119 TASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG---G  191 (442)
Q Consensus       119 ~~~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~  191 (442)
                      .+++.++.+++.+.   .+++.+++.|+++|++.+...+ ..+++.|++|+++|++++++.+.+..+|..+++.++   .
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~  187 (481)
T TIGR00879       108 ALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV  187 (481)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999988553   4566899999999999888888 589999999999999999999999999999999998   4


Q ss_pred             hhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccch--hhhhhhhhhh--------
Q 013453          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESAS--------  261 (442)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~--------  261 (442)
                      ...+                ..+||..+.+.++..++..+..+++||+|+....+++.++  +..++.....        
T Consensus       188 ~~~~----------------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (481)
T TIGR00879       188 SLNN----------------TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLD  251 (481)
T ss_pred             cCCC----------------CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHH
Confidence            4444                4456666677666666666667778887653211111111  0000000000        


Q ss_pred             ------hhhhhhhccccccccccccc------chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHH
Q 013453          262 ------AEVKEEEGREATPKKSLLKN------WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVL  329 (442)
Q Consensus       262 ------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (442)
                            ...+.+.+.....+++.++.      +.++...+..+...........+.+.+.      ++.|++..+.+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~  325 (481)
T TIGR00879       252 ELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF------ENAGVSTDHAFLVS  325 (481)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHH------HHcCCCchHHHHHH
Confidence                  00000000001112222221      1122122222211111112222333332      33588888888888


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchh-----hHHHHHHHHHHHHHHHHHHHHhh
Q 013453          330 AITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG-----LAFLLNCASVVKNLLSVSIITGL  404 (442)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  404 (442)
                      ....++.+++.+ +..++.||.+||+....+..+..+++.++..........     .+.......++..+.+.+..+..
T Consensus       326 ~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (481)
T TIGR00879       326 IIVGAVNFAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVP  404 (481)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCee
Confidence            888888899888 667788888999988888777666665554322111111     22223333333334444455666


Q ss_pred             hhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          405 FILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       405 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ..+..|.+|++.|+++.|+.++..++|++++|.+.|+
T Consensus       405 ~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       405 WVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             hhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777999999999999999999999999999988764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=7.2e-31  Score=243.90  Aligned_cols=338  Identities=14%  Similarity=0.137  Sum_probs=248.3

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      .+.++.++...++..++.....+.+|.+.+++|.++.+      .|++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            35577788888899999999999999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ++.+++.+++++++|++.+++.|+++|++.+...| ..+.+.|..++++|+++++..+.+.++|..+||.+++.+.+   
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---  155 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST---  155 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---
Confidence            99999999999999999999999999999888877 47788888999999999999999999999999999999876   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (442)
                          ...|     ...|+.     ........ ...+.+.+++..++ +                       +..+.++.
T Consensus       156 ----~~~~-----~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~-~-----------------------~~~~~~~~  196 (381)
T PRK03633        156 ----ELMS-----VLPWVT-----GLVLAAIL-PLLFTRILNQQAEN-H-----------------------DSTSIWPM  196 (381)
T ss_pred             ----cccc-----hHHHHH-----HHHHHHHH-HHHHhcccCCCCCC-C-----------------------CCCCHHHH
Confidence                1111     112221     11111111 11122221111100 0                       01123446


Q ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      +++|.++......+...........+.|.|...      .|.++.+.+...+...++.++++. ..+++.||+++++.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~  269 (381)
T PRK03633        197 LKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLR  269 (381)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHH
Confidence            677776654443444333444455566766542      478888999988888899999998 5667778889988887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      .+.....++.....  .   .....    ....+.+.......|.....+.|..|+++++...+..+...++|.++||.+
T Consensus       270 ~~~~~~~~~~~~~~--~---~~~~~----~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~  340 (381)
T PRK03633        270 VQVFVVILGSIAML--S---QAAMA----PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSF  340 (381)
T ss_pred             HHHHHHHHHHHHHh--h---hHHHH----HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666665544332  1   11111    111222233445667788888888998888888999888899999999998


Q ss_pred             CCC
Q 013453          439 GGA  441 (442)
Q Consensus       439 ~G~  441 (442)
                      .|+
T Consensus       341 ~G~  343 (381)
T PRK03633        341 TAM  343 (381)
T ss_pred             HHH
Confidence            875

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=9.8e-31  Score=247.60  Aligned_cols=368  Identities=14%  Similarity=0.063  Sum_probs=244.8

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      +|..+....+...........+...+|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   90 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG   90 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence            343343444444444444455677789999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHH-HHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          119 TASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l~~-~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      .++..++.++++++++++.+++ .|+++|++.+...+ ..+++.++++ ++|+++.++.+.+..+|..++|.+++.+.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~-  168 (455)
T TIGR00892        91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE-  168 (455)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH-
Confidence            9999999999999999998875 57999999887544 5788889886 789999999999999999999999999988 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCccchhhh-hhhhhhhhhhhhhhcccccc
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSY-DALESASAEVKEEEGREATP  274 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  274 (442)
                            .+         +||..+.+.+++.++..+..+++ ++.+.++..+.++.+... +...+........++..+..
T Consensus       169 ------~~---------gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (455)
T TIGR00892       169 ------SF---------GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFL  233 (455)
T ss_pred             ------Hh---------ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhc
Confidence                  33         45555577766665554433333 322211100000000000 00000000000000001111


Q ss_pred             cccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh--hc
Q 013453          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI--LG  352 (442)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  352 (442)
                      ..+++++|+++......++..........+++.|...      .|++..+++.+.++.+++.+++++ ...++.||  .+
T Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~~~~  306 (455)
T TIGR00892       234 DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARP-SCGLIAGLKWIR  306 (455)
T ss_pred             chHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccC
Confidence            1257788988877777766666665555666666532      588999999999999999999888 44455543  33


Q ss_pred             hhHHHHHHH--HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHH
Q 013453          353 PIMVARIAG--VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL  430 (442)
Q Consensus       353 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  430 (442)
                      +++...+..  ....+..++....   .  ..+. +.+..++.+.......+...+.+.+.+|+++++++.|+.++..++
T Consensus       307 ~~~~~~~~~~~~~~~l~~ll~~~~---~--~~~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l  380 (455)
T TIGR00892       307 PHVQYLFSFALLFNGLTHLLCALA---G--DYTG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECC  380 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---c--hHHH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHH
Confidence            333332222  2222222222111   1  1222 222333334444455667778888889999999999999999999


Q ss_pred             HHhhhcccCCCC
Q 013453          431 FKAAGPAGGGAL  442 (442)
Q Consensus       431 g~~~gp~i~G~l  442 (442)
                      |+++||.++|.+
T Consensus       381 g~~igp~i~G~l  392 (455)
T TIGR00892       381 AVLIGPPLAGRL  392 (455)
T ss_pred             HHHccccceeee
Confidence            999999999864

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=5.4e-31  Score=248.68  Aligned_cols=359  Identities=16%  Similarity=0.115  Sum_probs=230.7

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHH-HH-----HHHHHHhhhhhhhhhhcccCCch
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG-SS-----FMFGRALTSVFWGLVADRYGRKP  113 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-s~-----~~~~~~~~~~~~G~l~dr~Grr~  113 (442)
                      ++.....+++.+++.++...+.+..|.+.+|++.++.+      .+.+. +.     ..++..+++++.|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~   87 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK   87 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH
Confidence            44566788899999999999999999999999988877      44332 22     23334578999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccchHH--------HHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHH
Q 013453          114 VIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI  184 (442)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (442)
                      +++.+.+++.++.++++++++++        .++++|+++|++.+...+ ...+++|++|+++|++++++.+.+.++|..
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999987        468999999999998877 589999999999999999999999999998


Q ss_pred             HHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhh
Q 013453          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV  264 (442)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (442)
                      +++.+++.+.....+       ...- .++||.++.+..+...+........||+++..+++                  
T Consensus       168 ~g~~~g~~l~~~~~~-------~~~~-~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~------------------  221 (434)
T PRK15075        168 FAALLGYLLNQWLSP-------AQMA-EWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK------------------  221 (434)
T ss_pred             HHHHHHHHHHHhCCH-------HHHh-ccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh------------------
Confidence            888888877531100       0000 34566655654333222222222222221100000                  


Q ss_pred             hhhhcccccccccccccchhHHHH-HHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhH
Q 013453          265 KEEEGREATPKKSLLKNWPLMSSI-IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (442)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (442)
                        ++.+.....++..++++.+... ...++..........+.|.|+.+.     +|++..+.++...+..++.+++.+ +
T Consensus       222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~  293 (434)
T PRK15075        222 --HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWLP-I  293 (434)
T ss_pred             --hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-H
Confidence              0000011122233444433322 222223333444555666665432     588888888888888888888888 6


Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHH-HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHH
Q 013453          344 YPFLERILGPIMVARIAGVLTIPLLT-SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG  422 (442)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  422 (442)
                      .+++.||++||+....+.....+... .+.....  ...... ......+.+.......+....+..|.+|++.|+++.|
T Consensus       294 ~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g  370 (434)
T PRK15075        294 GGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--APSFAR-MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFS  370 (434)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--CCchHH-HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchhee
Confidence            77788888998877665444332221 1111111  111111 1111111112222334445577889999999999999


Q ss_pred             HHHHHHH-HHHhhhcccCCC
Q 013453          423 IAMTGMS-LFKAAGPAGGGA  441 (442)
Q Consensus       423 ~~~~~~~-~g~~~gp~i~G~  441 (442)
                      +.+.... +++.++|.+.|+
T Consensus       371 ~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        371 LAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             HHHHHHHHHHhhhHHHHHHH
Confidence            9765555 457788887764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1.1e-30  Score=244.66  Aligned_cols=339  Identities=19%  Similarity=0.118  Sum_probs=235.6

Q ss_pred             CChhhHHHHHHHHHHhHhcchhhchhHHH-HHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhH
Q 013453           38 LPITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (442)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (442)
                      +.++++..+.+..++..++.++..+.+|. +.+++|.++.+      .|++.+++.+++.+++++.|+++||+||||+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~   85 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVV   85 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHH
Confidence            34567778888999999999999999997 56889999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHH
Q 013453          117 MGTASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (442)
Q Consensus       117 ~~~~~~~i~~~~~~~a--------~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (442)
                      .+.++.+++.+.+.++        .+++.+++.|+++|++.+...+ ..+++.|++|+|+|++++++.+.+..+|.++||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  165 (399)
T PRK05122         86 FGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGA  165 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHH
Confidence            9999888877665543        2577899999999999998888 488899999999999999999999999999999


Q ss_pred             HhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhh
Q 013453          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (442)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (442)
                      .+++.+.+                ..+|+..+.+..+..++..+.....|++++   ++++ ++                
T Consensus       166 ~l~~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~----------------  209 (399)
T PRK05122        166 PLGVLLYH----------------WGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKGE-RL----------------  209 (399)
T ss_pred             HHHHHHHH----------------cccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCcc-ch----------------
Confidence            99999987                344554445544444333332222222211   1000 00                


Q ss_pred             hcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013453          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (442)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (442)
                            +.++.++  +.+.......+..........+.+.|+.+      .++  .+.+.......++.+++.+ ..+++
T Consensus       210 ------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~-~~g~l  272 (399)
T PRK05122        210 ------PFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA------RGW--DGAALALTLFGVAFVGARL-LFGNL  272 (399)
T ss_pred             ------hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccc--ccchHHHHHHHHHHHHHHH-HHHHH
Confidence                  0111111  11222222223333333444555655432      233  2345556667778888877 56667


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHH
Q 013453          348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG  427 (442)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  427 (442)
                      .||.++++....+..+..++..++....     ..+. ..+..++.+.+.....+.......+..|+++||++.|+.+..
T Consensus       273 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  346 (399)
T PRK05122        273 INRLGGLRVAIVSLLVEILGLLLLWLAP-----SPWM-ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF  346 (399)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhc-----cHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            7777888888777766666655544422     1222 222233333334445556566667789999999999999999


Q ss_pred             HHHHHhhhcccCCC
Q 013453          428 MSLFKAAGPAGGGA  441 (442)
Q Consensus       428 ~~~g~~~gp~i~G~  441 (442)
                      .++|..++|.+.|+
T Consensus       347 ~~~g~~~~~~~~g~  360 (399)
T PRK05122        347 LDLSLGITGPLAGL  360 (399)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=4.2e-31  Score=245.66  Aligned_cols=346  Identities=12%  Similarity=0.051  Sum_probs=240.4

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      ++..+++..++..++........+.+.++++.+..+      .+++.+.+.+++.+.++++|+++||+|||++++++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            455677788888887766777777778999999888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccC
Q 013453          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (442)
Q Consensus       122 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (442)
                      .+++.++++++.+.   ++.|+++|++.+...|+ .+++.|++|+|+|++++++.+....+|.++||.++|++.+     
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----  149 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-----  149 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            99998888776664   78899999999999995 9999999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccc
Q 013453          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (442)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (442)
                                 . .|+.++.+.+...++..+..+.+||+++++++++++.....++.              ....+.+++
T Consensus       150 -----------~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~  203 (393)
T PRK11195        150 -----------P-HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIALLRDF--------------FHACRVLWR  203 (393)
T ss_pred             -----------H-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHHHH--------------HHHHHHHHh
Confidence                       1 14444444444444444555677876543222111110000000              011245677


Q ss_pred             cchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHH
Q 013453          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (442)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (442)
                      +|.++.......+...........++.|.+.     .+|.++.+.|......+++.+++++ ...++.|+.++++....+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~lg~s~~~~G~~~~~~~~g~i~g~~-~~~~l~~~~~~~~~~~~g  277 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPV-----ALGITLNQPAYLQAVVAIGIAVGAG-AAARLVTLETVLRVLPAG  277 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCChhHHHHHHHHHHHHHHHHHH-HHHHHhcCCcccchHHHH
Confidence            7776655544444444444444455555543     2688999999999999999999998 555555565666666555


Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhh-hhHHHHHHHHHHHHHHhhhcccC
Q 013453          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ-RGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      ... .+....+...   +  ..+. .....++.+.......+...+...+..|++. +|++.++.+..++++..++..+.
T Consensus       278 ~~~-~~~~~~~~~~---~--~~~~-~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~  350 (393)
T PRK11195        278 ILM-GLVVLLMALQ---H--SLLP-AYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLY  350 (393)
T ss_pred             HHH-HHHHHHHHHH---h--HHHH-HHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence            432 2222222221   1  1222 2222222333333334555666667655554 79999999999999999888765


Q ss_pred             C
Q 013453          440 G  440 (442)
Q Consensus       440 G  440 (442)
                      +
T Consensus       351 ~  351 (393)
T PRK11195        351 S  351 (393)
T ss_pred             H
Confidence            4

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1.1e-31  Score=259.21  Aligned_cols=340  Identities=16%  Similarity=0.191  Sum_probs=241.8

Q ss_pred             hhHHHHHHHhccc---ccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHH
Q 013453           62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (442)
Q Consensus        62 ~~~~~~~~~~~~~---~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l  138 (442)
                      +..|.+.+|++++   ..+      .+++.+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            5668889999998   666      9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChh
Q 013453          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (442)
Q Consensus       139 ~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (442)
                      ++.|++.|++.+...+ ..+++.|++|+++|+++.++...+..+|.+++|.+++.+.+                   ||.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence            9999999999888777 59999999999999999999999999999999998866542                   555


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhh--hhhhhhhh----------h--hhhhhhcccccccccccccch
Q 013453          218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESAS----------A--EVKEEEGREATPKKSLLKNWP  283 (442)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~  283 (442)
                      .+.+.+++.++..+..+++||+|++...+++.++..  .++..+..          .  ++++++++.+...++++++|.
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            557777777776666688999987643332221111  11111000          0  000011112245678888988


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHH
Q 013453          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (442)
                      ++...+...+..+.........+.+      ...++.+....   ....++..+++.+ +..++.||+|||+.+..+.++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~i~~~~-~~~~l~dr~grr~~~~~~~~~  394 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFSYYGLVLD------LGNLGGNIYLD---LFISGLVELPAKL-ITLLLIDRLGRRYTMAASLLL  394 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc------ccccCCChHHH---HHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHH
Confidence            8776665544333322211111111      12234443322   2334566666666 666778888999999888887


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      .+++++++.+....   ..+. .....++..++.....+..+.+.+|.+|++.|+++.|+.++...+|++++|.+.+
T Consensus       395 ~~~~~l~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       395 AGVALLLLLFVPVD---LYFL-RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHHHHcCCC---chHH-HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            77776665554321   1122 2222223333444556777889999999999999999999999999999998765

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.5e-30  Score=242.84  Aligned_cols=345  Identities=12%  Similarity=0.112  Sum_probs=250.9

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      ++..+..++..++.........+.+|.+.+++|.|+++      .+++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455666777777777888889999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ++..++.++++++++++.+++.|+++|++.+...+ ..+++.|++|+++|+++++..+....+|..++|.+.+.+...  
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--  157 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--  157 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            99999999999999999999999999999888777 588999999999999999999999999999999998887641  


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (442)
                                   ..+||.++.+.+++.++..+..++ ++.|+.++++++  ++               ++ .   .++ 
T Consensus       158 -------------~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~~---------------~~-~---~~~-  201 (394)
T PRK03699        158 -------------SIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPK--AD---------------KP-V---AKE-  201 (394)
T ss_pred             -------------cccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCcc--cc---------------Cc-c---ccc-
Confidence                         234555556666655554433332 222221111000  00               00 0   011 


Q ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      ..++.++...+..++..........+.|.|+.+     .+|+++.+.+.+.+...++..++++ ..+++.||+++|+.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-----~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        202 KWGIGVLFLAIAALLYILAQLTFISWVPEYAQK-----KFGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVRFFDLQRILT  275 (394)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHhchhhHHH
Confidence            123556666666666666666777788877743     3688999999999998999999988 6777788889988877


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      ....+..+.+.++....   + ..+  .....+..++......+...+...+..| +.+++..|......++|..++|.+
T Consensus       276 ~~~~~~~~~~~~~~~~~---~-~~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~  348 (394)
T PRK03699        276 VLAGLALVLMYLFVNTD---D-PSH--LLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVV  348 (394)
T ss_pred             HHHHHHHHHHHHHHHcC---C-chH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHH
Confidence            76655555444333221   1 111  1222233333444455665666666555 456788899999999999999998


Q ss_pred             CCC
Q 013453          439 GGA  441 (442)
Q Consensus       439 ~G~  441 (442)
                      .|+
T Consensus       349 ~G~  351 (394)
T PRK03699        349 TSP  351 (394)
T ss_pred             HHH
Confidence            875

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=8.8e-31  Score=249.17  Aligned_cols=360  Identities=12%  Similarity=0.078  Sum_probs=240.8

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      ++.+...+...++.........+..|.+.+++|.+..+      .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34455666677777777777888899999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (442)
                      ++++++.++++++++++.+++.|++.|++.+...+...+++|++|+++|++++++.+...++|..+++.+.+.+......
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~  188 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD  188 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998776655677899999999999999999888888888777766555331100


Q ss_pred             --CCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccc
Q 013453          200 --YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (442)
Q Consensus       200 --~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (442)
                        ..+         ..+||..+.+.+++.++..+..++++++++..+.++     .    ++..   +.++.+....+++
T Consensus       189 ~~~~~---------~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~-----~----~~~~---~~~~~~~~~~~~~  247 (476)
T PLN00028        189 AGAPS---------FTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRE-----L----KKSG---TMPKDSFSKVLRY  247 (476)
T ss_pred             cCCcc---------hhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhh-----H----HhcC---ccccccHHHHHHH
Confidence              001         124555557777777666554445544322111000     0    0000   0000001123455


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchh---
Q 013453          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI---  354 (442)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  354 (442)
                      .++++++|...+.+++.......+.++.|.|+..     .+|++..+++.+.+..+++.+++++ +.+++.||++||   
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-----~~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r~~~  321 (476)
T PLN00028        248 GVTNYRTWILALTYGYSFGVELTMDNIIAEYFYD-----RFGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARRFGM  321 (476)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhcCc
Confidence            6778888877766665555555566667766542     3689999999999999999999998 677777776654   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHH
Q 013453          355 ----MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL  430 (442)
Q Consensus       355 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  430 (442)
                          ........+..+.+.++...   .  ..+.... ..++.+.......+..+.+..+. +++.+|++.|+.+..+++
T Consensus       322 ~~r~~~~~~~~~l~~i~~~~~~~~---~--~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~l  394 (476)
T PLN00028        322 RGRLWALWIVQTLGGVFCIWLGRA---N--SLGAAIV-VMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNV  394 (476)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccc---c--hHHHHHH-HHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccH
Confidence                12222222222222222111   1  1111111 11111222222333455555664 557999999999998888


Q ss_pred             HHhhhcccC
Q 013453          431 FKAAGPAGG  439 (442)
Q Consensus       431 g~~~gp~i~  439 (442)
                      |+.++|.+.
T Consensus       395 g~~i~~~l~  403 (476)
T PLN00028        395 GAVLTQLLF  403 (476)
T ss_pred             HHHHHHHHH
Confidence            998888764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=7.9e-31  Score=250.22  Aligned_cols=370  Identities=14%  Similarity=0.120  Sum_probs=252.4

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHH----------------------HhcccccchhhhhHHHHHHHHHHHHHH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFGRA   96 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~s~~~~~~~   96 (442)
                      ++.....+++...+.+.++.......+.+.+                      |++.+..+      .|++.+.+.+++.
T Consensus        17 r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~   90 (465)
T TIGR00894        17 RLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYGQI   90 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHHHH
Confidence            3444446666777778888777777766665                      67888888      9999999999999


Q ss_pred             hhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhh
Q 013453           97 LTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLS  173 (442)
Q Consensus        97 ~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~  173 (442)
                      +++++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...| ...++.|++|+++|+++++
T Consensus        91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  170 (465)
T TIGR00894        91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG  170 (465)
T ss_pred             HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999999998887554  5688999999999999999888 5899999999999999999


Q ss_pred             hhhHhhhhHHHHHHHhhhhhccccccCCCc-ccccccccCCcChhHHHHHHHHHHHHHHHHh-hccccCCCCCCCCccch
Q 013453          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCD  251 (442)
Q Consensus       174 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~  251 (442)
                      +...+..+|.+++|++++.+.+       . .|||..|         .+.++..++..+.++ ..+|+|+.++..+++++
T Consensus       171 ~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f---------~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  234 (465)
T TIGR00894       171 MSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIF---------YVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK  234 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeeh---------hhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH
Confidence            9999999999999999999987       3 2555444         777776666655444 45555543222111111


Q ss_pred             hhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHH
Q 013453          252 VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAI  331 (442)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (442)
                         +.+++..+ +++++.+.+..++++++++.+|...+..++.......+..++|.|+.+     .+|++..+.++....
T Consensus       235 ---~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-----~~g~s~~~~g~~~~~  305 (465)
T TIGR00894       235 ---KYINSSLQ-GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW-----VLRVSGKENGLLSSL  305 (465)
T ss_pred             ---HHHHhhcc-cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCcChHHhHHHHHH
Confidence               11111111 111111223457788999999999888888888888888888888753     368899999999998


Q ss_pred             HHHHHHHHHhhHHHHHHHhhchhH-----HH-HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013453          332 TGFSLLVFQLSLYPFLERILGPIM-----VA-RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLF  405 (442)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (442)
                      ..++..++.+ +.+++.||.++++     .. .....+.........+.........+..... ..+.++......+...
T Consensus       306 ~~~~~~i~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~  383 (465)
T TIGR00894       306 PYLFAWLCSI-FAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII-LTLANAVSSGPLAGVL  383 (465)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH-HHHHHHHhhhhhhhhh
Confidence            8999999888 5555666543221     11 1111111111111111111101111221211 2222222222233344


Q ss_pred             hhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          406 ILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       406 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                      ....+..| +.+|.+.|+.++.+.+++.++|.+.|++
T Consensus       384 ~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       384 INSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             hchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            44455555 5899999999999999999999998863

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=4.4e-31  Score=248.48  Aligned_cols=347  Identities=14%  Similarity=0.081  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      +..+....++..++.....+.+|.+.++++.+..+      .|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~   92 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTC   92 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHH
Confidence            33455556677777788888999999999998888      999999999999999999999999999999999988877


Q ss_pred             HHHHHHHhc-----cchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       123 ~i~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +++.+..+.     .++++.+++.|++.|++.+...++ .+++.|++|+++|+++.++.+...++|..+||.+++.+.+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~-  171 (417)
T PRK10489         93 GLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA-  171 (417)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH-
Confidence            776655432     568899999999999998887774 8899999999999999999999999999999999999987 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccc
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (442)
                            ..|         |+..+.+.++..++..+..+.+||++++++++++..++                  .....+
T Consensus       172 ------~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------~~~~~~  218 (417)
T PRK10489        172 ------AGG---------VAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRS------------------LLAGFR  218 (417)
T ss_pred             ------HHh---------hHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHH------------------HHHHHH
Confidence                  334         44444666666555555566777754332111100000                  011234


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (442)
                      .++++|.++...+..++... ......++|.|....     +|.++.+.+.+.+..+++.+++.+ +.+++.||.++++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~  291 (417)
T PRK10489        219 FLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLL  291 (417)
T ss_pred             HHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchH
Confidence            46677776655544443322 234455666665432     688889999999999999999988 66677777666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhc
Q 013453          357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  436 (442)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp  436 (442)
                      +..+.....+....+...+     ..+. .....++.+.+.....+...++..+..|++.||+++|+.+...++|..+||
T Consensus       292 l~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~  365 (417)
T PRK10489        292 MLLSTLGSFLAVGLFGLMP-----MWIL-AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA  365 (417)
T ss_pred             HHHHHHHHHHHHHHHHccc-----hHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence            6666655555554443321     1222 222223333333334455667888889999999999999999999999999


Q ss_pred             ccCCCC
Q 013453          437 AGGGAL  442 (442)
Q Consensus       437 ~i~G~l  442 (442)
                      .+.|++
T Consensus       366 ~l~G~l  371 (417)
T PRK10489        366 ALLGGL  371 (417)
T ss_pred             HHHHHH
Confidence            988753

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=2.7e-30  Score=241.67  Aligned_cols=347  Identities=14%  Similarity=0.112  Sum_probs=241.5

Q ss_pred             HHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHH
Q 013453           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (442)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~  125 (442)
                      +.+..+...+......|.+|.+.++++.+..+      .++..+++.+++.++++++|+++||+|||++++.+.++++++
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~   94 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA   94 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence            34455566678889999999999999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcc
Q 013453          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (442)
Q Consensus       126 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (442)
                      .+++++++|++.++++|+++|++.+...+ ..+++.|++|+++|++++++......+|..+||.+++.+.+         
T Consensus        95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~---------  165 (413)
T PRK15403         95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH---------  165 (413)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            99999999999999999999999876656 47889999999999999999999999999999999999987         


Q ss_pred             cccccccCCcChhHHHHHHHHHHHHHHH-HhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccch
Q 013453          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (442)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (442)
                             .++||..+.+.++..++..+. .+.+||+++.++++. ..+                  +..+.+++++|||.
T Consensus       166 -------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~-~~~------------------~~~~~~~~ll~~~~  219 (413)
T PRK15403        166 -------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPF-SAK------------------SVLRDFRNVFRNRL  219 (413)
T ss_pred             -------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCC-ChH------------------HHHHHHHHHHcCHH
Confidence                   344555557777766665543 456788654211110 000                  01123567889999


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHH
Q 013453          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (442)
                      ++...+...+.......+....|.++.+     .+|+++.+.++.......+.+++..+..++..|+.++|.. .....+
T Consensus       220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~-----~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~  293 (413)
T PRK15403        220 FLTGAATLSLSYIPMMSWVAVSPVILID-----AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI-WRAVPI  293 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH-HHHHHH
Confidence            9988777777666666666666666543     3688999999998877888888777566666665444432 222222


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ..++..++........ ..+........+.+.+.....+......-. -....+|++.++.+.....+..+++...|+
T Consensus       294 ~~ig~~l~~~~~~~~~-~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~  369 (413)
T PRK15403        294 QLVGLALLIVGNLLWP-HVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRW  369 (413)
T ss_pred             HHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222211110011 112112222222222333344444422211 122347899999888888877777766553

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=1.9e-30  Score=242.27  Aligned_cols=337  Identities=16%  Similarity=0.147  Sum_probs=228.8

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .+.++.+.+..++..+..+...|.+|.+ .+++|.|..+      .|++.+++.+++.++++++|+++||+||||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQG   87 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH
Confidence            3456667777788888888888999864 6899999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---hc-----cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHh
Q 013453          119 TASVVIFNTLF---GL-----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (442)
Q Consensus       119 ~~~~~i~~~~~---~~-----a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (442)
                      .+...++.+.+   +.     .++++.+++.|+++|++.+...+ ..+++.|++|+|+|++++++.+.+...|..++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~  167 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPL  167 (392)
T ss_pred             HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHH
Confidence            88777665432   22     35889999999999999888877 48899999999999999999999999999999999


Q ss_pred             hhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhc
Q 013453          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (442)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (442)
                      ++.+.+                .++|+..+.+..+..++........||.++++   ++ ++                  
T Consensus       168 ~~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~------------------  209 (392)
T PRK12382        168 GLLLHS----------------HFGFAALALTTMVLPLLAWAFNGTVRKVPAHA---GE-RP------------------  209 (392)
T ss_pred             HHHHHh----------------ccChHHHHHHHHHHHHHHHHHHHhccCCCCCc---cc-Cc------------------
Confidence            999987                44455444444333332222222233321110   00 00                  


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013453          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (442)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (442)
                          +.++.++  .++...+..++..........+.+.|+.+      .+++  +.+......+++.+++++ ..+++.|
T Consensus       210 ----~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~-~~g~l~~  274 (392)
T PRK12382        210 ----SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS------KGWA--MAGFTLTAFGGAFVLMRV-LFGWMPD  274 (392)
T ss_pred             ----hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh------cCCc--hhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence                0011111  11111112222222333344455555432      2443  345555666777777777 5566777


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHH
Q 013453          350 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  429 (442)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  429 (442)
                      |.++++.+..+..+..+...++....     ..+. ......+.+.......+.......+..|+++||++.|+.++..+
T Consensus       275 r~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  348 (392)
T PRK12382        275 RFGGVKVAIVSLLVETVGLLLLWLAP-----TAWV-ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQD  348 (392)
T ss_pred             hcCCCeehHHHHHHHHHHHHHHHHcc-----cHHH-HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            77888888777776666655544321     1222 22222333333334456666777788999999999999999999


Q ss_pred             HHHhhhcccCCC
Q 013453          430 LFKAAGPAGGGA  441 (442)
Q Consensus       430 ~g~~~gp~i~G~  441 (442)
                      +|..++|.+.|+
T Consensus       349 ~g~~ig~~~~g~  360 (392)
T PRK12382        349 IAYGVSGPLAGM  360 (392)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988775

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.3e-30  Score=239.90  Aligned_cols=362  Identities=11%  Similarity=0.031  Sum_probs=247.6

Q ss_pred             CCChhhHHHHHHHHHHhHhcchhhchhHHHHHH-HhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhh
Q 013453           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (442)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~  115 (442)
                      +..+|.++..++..++......+..+..+.+.+ ++|+|.+|      .+++.+++.+++.++.++.|++.||+|.|+++
T Consensus        30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~  103 (462)
T PRK15034         30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWT  103 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            334567777777777888888888898888876 89999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh
Q 013453          116 IMGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       116 ~~~~~~~~i~~~~~~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                      .++.++..+.+++.+++     ++++.+++.|++.|++.+.+.+....+++++|+++||+++|+.....++|..+++++.
T Consensus       104 ~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        104 VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999987     8999999999999998554444699999999999999999999777777777666655


Q ss_pred             hhhccccccCCCccccccccc----CCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhh
Q 013453          191 GFLAQPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (442)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (442)
                      ..+....  .-..+||+....    ..+|+....+..++.++..+..++..++++..+.                     
T Consensus       184 p~~i~~~--l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~---------------------  240 (462)
T PRK15034        184 PLVIFVP--VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA---------------------  240 (462)
T ss_pred             HHHHHHH--HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc---------------------
Confidence            5433100  000345544331    2336666666666665554444433332221100                     


Q ss_pred             hhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHH
Q 013453          267 EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (442)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (442)
                          ..+..++.+|+|+.|...+.+++.+..+.++..++|.|....       ++............+...+.++ ++++
T Consensus       241 ----~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-------~~~~~~l~~~~l~~l~~~l~rp-lgG~  308 (462)
T PRK15034        241 ----SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-------FPDVNILRLAFFGPFIGAIARS-VGGA  308 (462)
T ss_pred             ----CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cChHHHHHHHHHHHHHHHHHHH-hhHH
Confidence                012245688999999999999998888888888888886542       2222222223334566777777 7888


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHHHHH-HHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCh-----------
Q 013453          347 LERILGPIMVARIAGVLTIPLLTSYPY-IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ-----------  414 (442)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  414 (442)
                      +.||+|+++++.++.+...++...... .+.......+. .....+.........+...+-++.+.+|+           
T Consensus       309 LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~-~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~  387 (462)
T PRK15034        309 ISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIA-FYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG  387 (462)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence            999999999988888766666533222 21111111221 11111111111112223344455555553           


Q ss_pred             ----------hhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          415 ----------DQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       415 ----------~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                                ++.|.+.|+....+.+|+++-|.+.|
T Consensus       388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g  423 (462)
T PRK15034        388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFG  423 (462)
T ss_pred             chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence                      26789999999999999999887655

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=4.3e-30  Score=240.71  Aligned_cols=345  Identities=17%  Similarity=0.132  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      +.......++..+..+.+.|.+|.+.+++|.++++      .+++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   81 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLF   81 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHH
Confidence            33444456666677788889999999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCC
Q 013453          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (442)
Q Consensus       123 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (442)
                      .++.++++++++++.+++.|+++|++.+...+ ..+++.|++|++++++..+.......+|..++|.+++++.+      
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------  155 (401)
T PRK11043         82 ALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN------  155 (401)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            99999999999999999999999999877777 48899999999999999999998999999999999999987      


Q ss_pred             CcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccccc
Q 013453          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (442)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (442)
                                ..+|+..+.+.++..++..+..++++|++++.+++    +                   .+.++++++|+
T Consensus       156 ----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~  202 (401)
T PRK11043        156 ----------HFGWQAIFATLFAITLLLILPTLRLKPSKKARKQS----Q-------------------DALTFKQLLKS  202 (401)
T ss_pred             ----------cCChHHHHHHHHHHHHHHHHHHHHcCCCCCccccc----h-------------------HHHHHHHHHcC
Confidence                      44455555666666666555555555543221100    0                   01234567778


Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                      |+++...+...+.......+..+.|.+..      ++|+++.+.++......++.+++++ ...++.||+++++......
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~g~s~~~~g~~~~~~~~~~~~g~~-~~~~l~~r~~~~~~~~~~~  275 (401)
T PRK11043        203 KTYLGNVLIFAACSAAFFAWLTGSPFILE------QMGYSPADIGLSYVPQTIAFLVGGY-GCRAALQKWGGEQLLPWLL  275 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHH
Confidence            87776555555444444455555555543      2588999999888777788888877 5666777778877665555


Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ....++...+...........+. ........+.......+.......+..| +++|++.|+.++.+..++..++.+.|.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~  353 (401)
T PRK11043        276 VLFAVSVIAIWLASLLSHPSLVP-LLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA  353 (401)
T ss_pred             HHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433322222111112222 2222223333444555666666556565 679999999999988888888877764

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-32  Score=241.45  Aligned_cols=372  Identities=17%  Similarity=0.122  Sum_probs=246.7

Q ss_pred             CCCCCChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCch
Q 013453           34 TKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP  113 (442)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~  113 (442)
                      ...+.+.+.+..++++.+++..+.+.+....+.+.+.+|++++.      .|++.+.+.+.+.+++|+.|+++||++||+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~   99 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKR   99 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcce
Confidence            34455667778899999999999999999999999999999999      999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhh
Q 013453          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (442)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (442)
                      ++.+|..+|.++.+++++++.||++.++|.+.|+|.+.+.| ++++++|.+|.++|++++++++.+..+|..+|.+++..
T Consensus       100 v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  100 VIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence            99999999999999999999999999999999999999999 59999999999999999999999999999999999999


Q ss_pred             hccccccCCCccc-ccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcc
Q 013453          193 LAQPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (442)
Q Consensus       193 l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (442)
                      +.+       +.+ ||+.+         ...+++.++.. +..++++|+++..+++.+...+.           .+....
T Consensus       180 va~-------~~~~Wr~af---------~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts  232 (493)
T KOG1330|consen  180 VAS-------LTFWWRWAF---------RGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTS  232 (493)
T ss_pred             ecc-------CccceEEEE---------EeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccc
Confidence            987       444 44333         45555665554 44566677665332222111100           000111


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 013453          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (442)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (442)
                      ..++.+.+.|++.+....+.+....+...++.-+.|.+.+.....  .|++..+..++..+...++.+|.+ .++.+.|+
T Consensus       233 ~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl-~Ggiisd~  309 (493)
T KOG1330|consen  233 VWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVL-FGGIISDK  309 (493)
T ss_pred             hHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhhe-ehHHHHHH
Confidence            123344555666666556666666655555555555554433222  233444444444444445555544 44445444


Q ss_pred             ----hch---hHHHHHHHHHHHHHHHHH-HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHH
Q 013453          351 ----LGP---IMVARIAGVLTIPLLTSY-PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG  422 (442)
Q Consensus       351 ----~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  422 (442)
                          +.+   .+.--....+.+...+.+ ........ ......+++.++.-...........-+..+.+|+++|.++.+
T Consensus       310 ~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a  388 (493)
T KOG1330|consen  310 LSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-SSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYA  388 (493)
T ss_pred             HHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHH
Confidence                322   121111111111111111 11111111 111112222222222222333444566778889999999999


Q ss_pred             HHHHHHHH-HHhhhcccCCCC
Q 013453          423 IAMTGMSL-FKAAGPAGGGAL  442 (442)
Q Consensus       423 ~~~~~~~~-g~~~gp~i~G~l  442 (442)
                      +...+..+ |.+-+|.+.|.+
T Consensus       389 ~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  389 LDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             HHHHHHHHhccCCCcceehhH
Confidence            99887765 555556587754

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=9e-31  Score=248.36  Aligned_cols=359  Identities=12%  Similarity=0.027  Sum_probs=233.3

Q ss_pred             HHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHH
Q 013453           48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (442)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~  127 (442)
                      +......+.........|.+.++ |.+..+      .+++.+.+.+++.+++++.|+++||+|||++++++.++.+++.+
T Consensus        36 ~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~  108 (452)
T PRK11273         36 FGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML  108 (452)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHH
Confidence            33334444444456677888888 999999      99999999999999999999999999999999999999999999


Q ss_pred             HHhccc----hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHH-HHHHhhhhhccccccCC
Q 013453          128 LFGLSV----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEKYP  201 (442)
Q Consensus       128 ~~~~a~----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~~~~  201 (442)
                      ++++++    +++.+++.|++.|++.+...+ ....+.|++|+++|++++++++.+.++|.. .+|+++..+..      
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~------  182 (452)
T PRK11273        109 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW------  182 (452)
T ss_pred             HHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------
Confidence            888753    788899999999999888777 578889999999999999999999999864 45554433332      


Q ss_pred             CcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccc-ccccc
Q 013453          202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSLL  279 (442)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  279 (442)
                                ..+||..+++.+++.++. ++..+++||+|+....+++++.+  ++..+..+++++++.+.... .+.++
T Consensus       183 ----------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (452)
T PRK11273        183 ----------FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK--NDYPDDYNEKHEQELTAKQIFMQYVL  250 (452)
T ss_pred             ----------hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh--hccccccccccCCCccHHHHHHHHHH
Confidence                      123555556666555554 45566778876542211111000  00000000000000000000 12367


Q ss_pred             ccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh--chhHHH
Q 013453          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVA  357 (442)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  357 (442)
                      |++.+|...+..++..........++|.|+.+.     .|++..+.+.......++.+++.+ +.+++.||.  +|+...
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~G~l~dr~~~~r~~~~  324 (452)
T PRK11273        251 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGAT  324 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCCcchH
Confidence            888898888887777777777778888887643     578888888888888888888888 666777766  444332


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhh-h
Q 013453          358 R-IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA-G  435 (442)
Q Consensus       358 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g  435 (442)
                      . ....+..+....+.. .. .. ..+.... .....+...............|.+|++.||++.|+.+...++|+.+ +
T Consensus       325 ~~~~~~l~~~~~~~~~~-~~-~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g  400 (452)
T PRK11273        325 GVFFMTLVTIATIVYWL-NP-AG-NPTVDMA-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA  400 (452)
T ss_pred             HHHHHHHHHHHHHHHHH-hc-cc-ChHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhh
Confidence            2 222222222222211 11 11 1111111 1111122212222233445668899999999999999999988765 7


Q ss_pred             cccCCC
Q 013453          436 PAGGGA  441 (442)
Q Consensus       436 p~i~G~  441 (442)
                      |.+.|+
T Consensus       401 ~~v~g~  406 (452)
T PRK11273        401 SAIVGY  406 (452)
T ss_pred             hhhHHH
Confidence            887764

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=8.2e-31  Score=252.63  Aligned_cols=372  Identities=16%  Similarity=0.161  Sum_probs=249.7

Q ss_pred             CChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 013453           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (442)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (442)
                      .+++.+..+++..+++.++.....+.+|.+.+++|.+..+      .+++.+.+.+++.+++++.|+++||+|||++++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3455666888888999999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +.++.+++.++++++++++.+++.|++.|++.+...+ ..+++.|.+|+++|++++++...+..+|..++|.+++.+.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-  169 (496)
T PRK03893         91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP-  169 (496)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999999999999999999999999887777 58999999999999999999999999999999999999987 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccc--hhhhhhhhhhhhhhhhh-------
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC--DVSYDALESASAEVKEE-------  267 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------  267 (442)
                            ..||         |..+.+..+..++.++....+||++++.++++++.  ++..+.......+....       
T Consensus       170 ------~~~w---------~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (496)
T PRK03893        170 ------VWGW---------RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA  234 (496)
T ss_pred             ------cCCH---------HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence                  4444         44445544433333334445666543221111110  00000000000000000       


Q ss_pred             -------hccccccc-------------------ccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCC
Q 013453          268 -------EGREATPK-------------------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (442)
Q Consensus       268 -------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (442)
                             .......+                   ....+.+......+..+...........++|.|+..     ++|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-----~~g~~  309 (496)
T PRK03893        235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKT-----DLGYD  309 (496)
T ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHh-----hcCCC
Confidence                   00000000                   000000000001111111111111233455666532     36899


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 013453          322 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSII  401 (442)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (442)
                      ..+.+.+.+...++.+++.+ ..+++.||+++++....+..+..+....+....   ....+. .....+..++.+.+..
T Consensus       310 ~~~~g~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~  384 (496)
T PRK03893        310 PHTVANVLFFSGFGAAVGCC-VGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG---GANVWV-LGLLLFFQQMLGQGIS  384 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc---ccHHHH-HHHHHHHHHHHhcccc
Confidence            99999999999999999988 777788888988887776655554433322211   111111 1122222222233334


Q ss_pred             HhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          402 TGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       402 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +....+..+.+|+++||+++|+.+....+|+.+||.+.|.
T Consensus       385 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~  424 (496)
T PRK03893        385 GLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGAL  424 (496)
T ss_pred             hhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHH
Confidence            5566778888999999999999999999999999988774

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=5.5e-30  Score=238.72  Aligned_cols=341  Identities=18%  Similarity=0.221  Sum_probs=246.3

Q ss_pred             HHHHHHHHHhHhcchhhchhHHH-HHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      ..+....++...+.....|.++. +.+++|.+..+      .|++.+.+.++..+.+++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence            44556677777777777888875 46889999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCC
Q 013453          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (442)
Q Consensus       123 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (442)
                      .++.+++.++++++.+++.|+++|++.+...| ..+++.|++|+++|++++++.+...++|..+||.+++++.+      
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~------  160 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ------  160 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            99999999999999999999999999888888 48999999999999999999999999999999999999973      


Q ss_pred             CcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccc
Q 013453          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (442)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (442)
                        .|         |+..+.+.++..++.. +..+.+||.+..   +.+  ++                  ....++++++
T Consensus       161 --~g---------~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~--~~------------------~~~~~~~~~~  206 (400)
T PRK11646        161 --YD---------FRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVR--TP------------------VREGMTRVLR  206 (400)
T ss_pred             --hh---------HHHHHHHHHHHHHHHHHHHHHhCCccccc---ccc--hh------------------hHHHHHHHHc
Confidence              23         4444466655554443 333445543211   000  00                  0113456678


Q ss_pred             cchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHH
Q 013453          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (442)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (442)
                      +|+++...+..+...........+.|.|..+      .+.++.+.+.+.+..++..........++.+||.+.++....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  280 (400)
T PRK11646        207 DKRFVTYVLTLTGYYMLAVQVMLMLPIMVND------IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAG  280 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhhhhHHh------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            8887665554444333333333445554432      2346778888888877777766666778888877666655666


Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      ..+..+...++...+     ..+... ......+.......+...++..+..|+++||++.|+.+....+|..+||.+.|
T Consensus       281 ~~~~~~~~~~l~~~~-----~~~~~~-~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G  354 (400)
T PRK11646        281 LLIMSLSMFPIGMVS-----NLQQLF-TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGG  354 (400)
T ss_pred             HHHHHHHHHHHHHhh-----hHHHHH-HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchH
Confidence            555555554443322     112111 11222223333455677888889999999999999999999999999999988


Q ss_pred             CC
Q 013453          441 AL  442 (442)
Q Consensus       441 ~l  442 (442)
                      ++
T Consensus       355 ~l  356 (400)
T PRK11646        355 WL  356 (400)
T ss_pred             HH
Confidence            63

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=8.5e-30  Score=238.12  Aligned_cols=349  Identities=13%  Similarity=0.141  Sum_probs=244.7

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      +++.++......++..+......|.+|.+.+++|.++.+      .+++.+.+.++..++++++|+++||+|||+++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~   79 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG   79 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence            455566666666677777788889999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      .++..++.+++.++++++.+++.|++.|++.+...+ ...+..|.+++++|+++.+..+.+..+|..++|.+++.+.+  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--  157 (394)
T PRK11652         80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--  157 (394)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            999999999999999999999999999999888777 47888999999999999999999999999999999999987  


Q ss_pred             ccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccc
Q 013453          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (442)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (442)
                                    ..+|+..+.+.++..++. .+..++.||+++.++++++                      ....++
T Consensus       158 --------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~  201 (394)
T PRK11652        158 --------------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADARRTR----------------------VLASYR  201 (394)
T ss_pred             --------------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccccchhH----------------------HHHHHH
Confidence                          344555556666555444 3344567776432211100                      012234


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (442)
                      +.+++|.++...+..+........+....+.++.     +.+|+++.+.+++.....++.+++.. ..+++.||.+++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~~~~~~~  275 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMG-----AVLGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTLMW  275 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            5677777766555444433333333333333332     22688999999988887888888877 56666666553322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhc
Q 013453          357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  436 (442)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp  436 (442)
                      ..  .....+....+...........+. ........+.......+.......+..| +++|++.++.+....+|..+++
T Consensus       276 ~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~  351 (394)
T PRK11652        276 QS--VICCLLAGLLMWIPGWFGVMNVWT-LLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAA  351 (394)
T ss_pred             HH--HHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHH
Confidence            22  122222211111111111111222 2222233333444556777777777776 6889999999999999999999


Q ss_pred             ccCCC
Q 013453          437 AGGGA  441 (442)
Q Consensus       437 ~i~G~  441 (442)
                      .++|.
T Consensus       352 ~~~~~  356 (394)
T PRK11652        352 LLSAM  356 (394)
T ss_pred             HHHHH
Confidence            88764

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=8.4e-30  Score=238.26  Aligned_cols=355  Identities=14%  Similarity=0.157  Sum_probs=242.4

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .+|.+...+++.++.........+.++.+.+|+|.++.+      .|++.+.+.+++.+++++.|+++||+||||++..+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~   84 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIG   84 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            345666777788887777777777888888999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---hc-cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHH-HHHHHhhhh
Q 013453          119 TASVVIFNTLF---GL-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGF  192 (442)
Q Consensus       119 ~~~~~i~~~~~---~~-a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~  192 (442)
                      .++.+++.+++   ++ .++++.+++.|++.|++.+...+ ..+.+.|++|+|+|++++|+.+.+.++|. .++|.+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897        85 LLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998887655   23 35888999999999999877766 57888999999999999999999999997 689999999


Q ss_pred             hccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccc
Q 013453          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (442)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (442)
                      +.+       .+||+..+    |+..+..    .+...+..+..+|.+++.++++  +++.               ++..
T Consensus       165 l~~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------~~~~  212 (402)
T TIGR00897       165 AIP-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQT--REKF---------------SELG  212 (402)
T ss_pred             ccc-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCcccccC--Ccch---------------hhHH
Confidence            887       45543322    3322211    1112223333444322111100  0000               0001


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 013453          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (442)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (442)
                      +..+.++|+|+++...+..++......+...+.|.|...      +|++..+.+.......++..++.+ ..+++.||.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~  285 (402)
T TIGR00897       213 KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNV-IFGIVGDKLG  285 (402)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHhhc
Confidence            124467889998887777777666667777777766532      588888999888888899999998 5566777778


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHH
Q 013453          353 PIMVAR-IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  431 (442)
Q Consensus       353 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  431 (442)
                      ||+... .+.....+....+...........+.. .+..+..+.......+ ......+. ++++||++.|+.+...++|
T Consensus       286 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg  362 (402)
T TIGR00897       286 WMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA-LIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLS  362 (402)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH-HHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHH
Confidence            776653 222223332222222221111112221 2222222223233333 33445564 5578999999999999999


Q ss_pred             HhhhcccCCC
Q 013453          432 KAAGPAGGGA  441 (442)
Q Consensus       432 ~~~gp~i~G~  441 (442)
                      +.++|.+.|.
T Consensus       363 ~~~gp~i~g~  372 (402)
T TIGR00897       363 AFLAPAIAVL  372 (402)
T ss_pred             HHHHHHHHHH
Confidence            9999998775

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=8.5e-30  Score=233.20  Aligned_cols=353  Identities=20%  Similarity=0.189  Sum_probs=259.2

Q ss_pred             HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhc---cchHHHHHHHHHH
Q 013453           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL  144 (442)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~---a~~~~~l~~~r~l  144 (442)
                      .+.+|...++++.+...+.+.+++.+|.++|++..|+++||+|||..++++.++..++.+++.+   ++++.+++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3556766777778888999999999999999999999999999999999999888888877765   5789999999999


Q ss_pred             HHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHH
Q 013453          145 LGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (442)
Q Consensus       145 ~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  223 (442)
                      .|+..|.... ..-++.|..|++.||..-.+.+.+..+|.+++..++.--.         +|-     ...|+..+....
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i---------lGt-----~~~W~~l~~~~~  191 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL---------LGT-----EDLWPYLLAFPL  191 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh---------cCC-----CcchHHHHHHHH
Confidence            9999999888 5999999999999999999999999999999876663322         221     334666667788


Q ss_pred             HHHHHHHHHHhhccccCCCCCC-CCccchhh--hhhhhhh----------hhhhhhh--hcccccccccccccchhHHHH
Q 013453          224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVS--YDALESA----------SAEVKEE--EGREATPKKSLLKNWPLMSSI  288 (442)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~--~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  288 (442)
                      +++++..+...++||+|++.-. +++++++.  .+.....          .++.+++  ++++..+.+++++++..+...
T Consensus       192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~  271 (485)
T KOG0569|consen  192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL  271 (485)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence            8888888889999999998544 22222221  1111111          1111111  122556788999998877654


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHH
Q 013453          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (442)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (442)
                      ...+.....+ .+....+.++++....++.|++..++-+.....++..++..+ ++.++.||.|||+++..+...+.+..
T Consensus       272 ~i~~~v~~~q-q~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~-~~~~lid~~gRRpLll~~~~~~~~~~  349 (485)
T KOG0569|consen  272 LIGIVVSFAQ-QFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTL-VSPFLIDRLGRRPLLLISLSLMAVAL  349 (485)
T ss_pred             HHHHHHHHHH-HhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            3333322221 122233333333444556799999999999999999999998 88888888999999999988888876


Q ss_pred             HHHHHHHHhhchh-hH---HHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhc
Q 013453          369 TSYPYIAMLSGFG-LA---FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  436 (442)
Q Consensus       369 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp  436 (442)
                      .++.......+.. .|   ..+.....+...+..+.+|..+.+.+|++|++.|..++++..+...+..++-.
T Consensus       350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~  421 (485)
T KOG0569|consen  350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVG  421 (485)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence            6665544333222 22   22344444555667778899999999999999999999999999888776543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.98  E-value=2.2e-30  Score=240.00  Aligned_cols=357  Identities=13%  Similarity=0.090  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHH-HHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      .+..++..++.........+..|. +.+++|.++.+      .+++.+.+.+++.+++++.|+++||+|||++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            455677777778888888999995 88999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc-hHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc--
Q 013453          122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE--  198 (442)
Q Consensus       122 ~~i~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--  198 (442)
                      ..++.+++++++ +++.+++.|+++|++.+...+..+++.|++|+++|+++.++.....++|..+++.+++.+.....  
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999 99999999999999877665578899999999999999999998888888888887776654210  


Q ss_pred             -cCCCcccccccccCCcChhHHHHHHHHH-HHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccc
Q 013453          199 -KYPNLFSSESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (442)
Q Consensus       199 -~~~~~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (442)
                       +.+...+||+.+     .   ...++.. +...+.....+|+++.++++++...+.  .    ..+   .+++.....+
T Consensus       157 ~~~~~~~~w~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~---~~~~~~~~~~  219 (366)
T TIGR00886       157 AGLPAHLAWGWAF-----V---IVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG--A----RWS---VGTGALGDQL  219 (366)
T ss_pred             ccccccccccchh-----H---HHHHHHHHHHHHHHHHhcccCCcccccchhccccc--c----ccc---ccchhHHHHH
Confidence             001123444332     0   2223322 233344455566554321111100000  0    000   0000111345


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (442)
                      +.+++|+++...+..++..........+.+.|..+     .+|+++.+.+.+.....+..+++.+ +.+++.||+++|+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~  293 (366)
T TIGR00886       220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKD-----QFGLSKVTAGAYASLGGLLGSLARP-LGGAISDRLGGARK  293 (366)
T ss_pred             HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCcHHHHHHHHHHHHHHHHHHhh-ccchHHHhhccchh
Confidence            67788888877777666666666666777776653     3688999999888888888888887 67778888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHH
Q 013453          357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  431 (442)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  431 (442)
                      ...+......+..++........ ..+... .................+....+..| +++|++.|+.+..+++|
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       294 LLMSFLGVAMGAFLVVLGLVSPL-SLAVFI-VLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcc-hHHHHH-HHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            76666555554444433211100 111111 11111111222233445566667666 79999999999888765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.98  E-value=1.6e-29  Score=235.12  Aligned_cols=336  Identities=20%  Similarity=0.225  Sum_probs=237.2

Q ss_pred             hcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccch
Q 013453           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (442)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~  134 (442)
                      ++..+..|.+|.+.+++|.++.+      .+++.+.+.++..++++++|+++||+|||+++..+.++.+++.+++.++++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~   78 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT   78 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            34566779999999999999999      999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCC
Q 013453          135 FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (442)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (442)
                      ++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+....+|..++|.+++.+.+                .+
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------~~  142 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------------WF  142 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hc
Confidence            99999999999999888877 58999999999999999999999999999999999999987                34


Q ss_pred             cChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHH
Q 013453          214 PYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (442)
Q Consensus       214 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (442)
                      +|+..+.+.+++.++.. ...+++||+++.+++++.+.+                  +.....++.++++.++...+...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        143 SWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLR------------------TTIRNFASLFRHKRVLGYMLASG  204 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChH------------------HHHHHHHHHHcChHHHHHHHHHH
Confidence            45555566666655543 344566775432211110000                  00112345677887776655554


Q ss_pred             HHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 013453          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (442)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (442)
                      +.......+..+.+.++.     +.+|+++.+.+.......++.+++.. ..+++.||.++|+....+..+..+....+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~-----~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYI-----ELNGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHcCHHHHH-----HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            444433333333333332     23688999999999999999999988 666777888999888877765444333222


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHH-HHHhhhcccC
Q 013453          373 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS-LFKAAGPAGG  439 (442)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~gp~i~  439 (442)
                      .....+ ...+.......... ...............+..| +.++++.++.+.... +|..+++.+.
T Consensus       279 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        279 VSALLD-LGFWALVVGVAAFV-GCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHh-hhHHHHHHHHHHHH-HHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            221111 11222222222221 1222233334455566555 889999999877654 6666666554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=3.1e-29  Score=233.11  Aligned_cols=336  Identities=15%  Similarity=0.145  Sum_probs=235.6

Q ss_pred             HHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH-HHHHHHHH
Q 013453           48 IIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF  125 (442)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~i~  125 (442)
                      +..++..++.+...|.+|.+ .+++|.++.+      .|++.+++.+...+.+++.|+++||+||||.++. +..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            45677778888889999875 5789999999      9999999999999999999999999999887654 56666777


Q ss_pred             HHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhh--hhhhhHhhhhHHHHHHHhhhhhccccccCCC
Q 013453          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (442)
Q Consensus       126 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (442)
                      .++++++++++.+++.|++.|.+.+...| ..+++.|+.|+++|++.  .+....+.++|.+++|.+++.+.+       
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-------  150 (375)
T TIGR00899        78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-------  150 (375)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence            88889999999999999999987777777 47888898888777754  578888889999999999999987       


Q ss_pred             cccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccccc
Q 013453          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (442)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (442)
                               ..+||..+.+.+++.++..+ ..+++||+|++.+++++                       ..+.++.+++
T Consensus       151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  198 (375)
T TIGR00899       151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS  198 (375)
T ss_pred             ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence                     44556566777776665544 34557876543221110                       0011235566


Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                      ++++......++...........++.|+.     +.+|.++.+.+...........++.. ..+++.||.++|+....+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       199 RDTRLLFVACTLMWGCNILYIINMPLLII-----HELGLPDKLAGLMMGTAAGLEIPFML-LAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchhHHHHHH
Confidence            66665555444444333334445555543     23688888898888776666666666 6667778889888877766


Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ....+....+....     ..+.. .....+.+.......+.......|..|+ +++++.++.+...++|..++|.+.|.
T Consensus       273 ~~~~~~~~~~~~~~-----~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~  345 (375)
T TIGR00899       273 LAGVAFYTGLAADN-----SLWAL-LMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGI  345 (375)
T ss_pred             HHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444433332221     12222 2222222333334455666777787765 56799999999999999999998774

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.97  E-value=3.2e-30  Score=243.75  Aligned_cols=366  Identities=14%  Similarity=0.033  Sum_probs=237.3

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (442)
                      +...+................|.+.+ +|.++++      .+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            34444555555555556666777765 6999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc----chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          124 IFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       124 i~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ++.++.++.    ++++.+.+.|++.|++.|...+ ....+.|++|+++|++++++.+.+.++|..++|.+.+...+.  
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--  180 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--  180 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--
Confidence            998887764    4678888999999999888777 588899999999999999999999999999998887765541  


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccc-ccc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKK  276 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  276 (442)
                          ..         +||..+.+.++..++. ++..+++||+|+..+.++.++.+. +..++ ..++++++.+.+. ..+
T Consensus       181 ----~~---------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~  245 (438)
T TIGR00712       181 ----FN---------DWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDD-YNEKAEQELTAKEIFMQ  245 (438)
T ss_pred             ----hh---------hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccc-cccccccccchHHHHHH
Confidence                23         4555557766666554 445566787664321111000000 00000 0000000000000 112


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (442)
                      .++|++.++...+..++......+...+.|.|+...     .|+++.+.+....+..+..+++.+ ..+++.||.++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~  319 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFKGNR  319 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcc
Confidence            467888888887776666666667777788777643     588999999998888899999988 66667777643221


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHH-hh
Q 013453          357 ARIAGVLTIPLL-TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK-AA  434 (442)
Q Consensus       357 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~  434 (442)
                      ...+........ ....+.... ....+... ...+..+....+..........|..|++.||++.|+.+...+.|+ ++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~  397 (438)
T TIGR00712       320 GATGVFFMTLVTIAVIVYWMNP-AGNPLVDM-ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  397 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcC-CCchHHHH-HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhh
Confidence            112222211111 111111111 11112111 111111111111112223456788999999999999999988875 68


Q ss_pred             hcccCCC
Q 013453          435 GPAGGGA  441 (442)
Q Consensus       435 gp~i~G~  441 (442)
                      +|.+.|.
T Consensus       398 gp~l~G~  404 (438)
T TIGR00712       398 ASAIVGY  404 (438)
T ss_pred             cchhHHH
Confidence            9988875

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=1.5e-29  Score=237.83  Aligned_cols=354  Identities=20%  Similarity=0.296  Sum_probs=244.4

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      +....+++..++..+......+.+|.+.+++|.+..+. ...+.|++.+++.++..++++++|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            44556778888888888899999999999999886541 01125899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccC
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (442)
                      +..++.+++.++++++.+++.|++.|++.+...+...++.|++|+++|+++.++.+.+..+|..++|.+++.+.+     
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  167 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-----  167 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            999999999999999999999999999866543357889999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccc
Q 013453          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (442)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (442)
                        ..         +|+..+.+.+++.++..+ ..+++||++++.++++  ..+.                   +...+.+
T Consensus       168 --~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------~~~~~~~  215 (408)
T PRK09874        168 --SY---------GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE--MLHM-------------------REVVTSL  215 (408)
T ss_pred             --Hh---------CHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh--hhHH-------------------HHHHHhC
Confidence              33         445444666665555443 3455666532211110  0000                   0112345


Q ss_pred             ccchhHHHH-HHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          280 KNWPLMSSI-IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      ++++++... ....+..........+++.|.....  .+........+.+....+++.+++.. ..+++.||.+|++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~l~~~~~~~-~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELA--GNVSNIAFISGMIASVPGVAALLSAP-RLGKLGDRIGPEKILI  292 (408)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhHH
Confidence            566654432 2223333333334445555544210  00010112345566666777777776 6667788889988888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      .+.....+..+......     ..+. ..+..++.+.+.....+.......+..|++.+|+..++.+....+|..+||.+
T Consensus       293 ~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~  366 (408)
T PRK09874        293 TALIFSVLLLIPMSFVQ-----TPLQ-LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLM  366 (408)
T ss_pred             HHHHHHHHHHHHHHHhc-----cHHH-HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHH
Confidence            77766655554433321     1222 22222333344445566677777788899999999999999999999999998


Q ss_pred             CCC
Q 013453          439 GGA  441 (442)
Q Consensus       439 ~G~  441 (442)
                      +|.
T Consensus       367 ~G~  369 (408)
T PRK09874        367 GAA  369 (408)
T ss_pred             HHH
Confidence            875

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=1.4e-29  Score=235.52  Aligned_cols=346  Identities=15%  Similarity=0.172  Sum_probs=249.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      |.++.+.+..++...+.+...+.+|.+ .+++|.+..+      .|++.+.+.++..+++++.|+++||+|||++++++.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            446666677888888888888888765 4679999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ++..++.++.+++++++.+++.|++.|.+.+...+ ..++..|.+|+++|++++++.+...++|.+++|.+++++.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---  157 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---  157 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            99999999999999999999999998887777777 48999999999999999999999999999999999998863   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (442)
                           .||+         .++.+.+++.++..+ ..+++||+++++++++   ++                   ....++
T Consensus       158 -----~g~~---------~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~  201 (395)
T PRK10054        158 -----QSIN---------LPFWLAAICSAFPLVFIQIWVQRSEKAIATET---GS-------------------VWSPSV  201 (395)
T ss_pred             -----hccC---------cHHHHHHHHHHHHHHHHHHHHhccccccccch---hh-------------------hhhhhh
Confidence                 2344         444666655555433 3344565432211100   00                   011256


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHH
Q 013453          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (442)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (442)
                      .+|+|+++...+..++.......+..+.+.|....   ++.+.+....+.......+.....+...+++. ||.++|+.+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~l  277 (395)
T PRK10054        202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRL-NAANIRPLM  277 (395)
T ss_pred             hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeehhHHHHHH-ccCCchhHH
Confidence            78889988777776666655555545555554322   23466777788888777777666666444544 455778877


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcc
Q 013453          358 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  437 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~  437 (442)
                      ..+..+..+....+....  +  ..+. ..+.....+.+.....|.....+.+..|++.++++.+..+ ...+|.++||.
T Consensus       278 ~~~~~~~~~~~~~~~~~~--~--~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~  351 (395)
T PRK10054        278 TAGTLCFVIGLVGFIFSG--N--SLLL-WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPL  351 (395)
T ss_pred             HHHHHHHHHHHHHHHHcc--h--HHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHH
Confidence            777666666655443321  1  1221 1222233333444445677788888899999999999765 67789999999


Q ss_pred             cCCC
Q 013453          438 GGGA  441 (442)
Q Consensus       438 i~G~  441 (442)
                      ++|+
T Consensus       352 ~~G~  355 (395)
T PRK10054        352 VSGV  355 (395)
T ss_pred             HHHH
Confidence            8875

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=4.4e-29  Score=232.56  Aligned_cols=360  Identities=13%  Similarity=0.079  Sum_probs=255.5

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      .+..++...++.++..+...+.+|.+++++|.+..+      .|++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            355677777888888888899999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc---cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          122 VVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       122 ~~i~~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      ++++.+++..   .++++.+++.|++.|+|.|...+ ...++.+..|+++|++.+++.+...++|..++|.+++.+....
T Consensus        78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~  157 (410)
T TIGR00885        78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN  157 (410)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999988644   46899999999999999999888 5899999999999999999999999999999999999886421


Q ss_pred             ccCCC-ccccccc---------ccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhh
Q 013453          198 EKYPN-LFSSESL---------FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (442)
Q Consensus       198 ~~~~~-~~gw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (442)
                      ..... ..-++..         -...+||.++.+.+++.++..+...+.++++.++++  ++ +                
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~--~~-~----------------  218 (410)
T TIGR00885       158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD--AK-Q----------------  218 (410)
T ss_pred             CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--cc-c----------------
Confidence            00000 0000000         002347777777777666554443333222111100  00 0                


Q ss_pred             hcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013453          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (442)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (442)
                       .+.....++++|+|.++...+..+++.....+..++++.|....    ..+.+....+...........++++ ++.++
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~----~~~~~~~~a~~~~~~~~~~~~vGR~-~~~~l  292 (410)
T TIGR00885       219 -ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRL----IPGMTAGFAANYNIGAMVIFFISRF-IGTWL  292 (410)
T ss_pred             -ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence             00111334678888888888888888777777777777776431    1234444445455555566777777 77788


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHH
Q 013453          348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG  427 (442)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  427 (442)
                      .||.++++.+.+......+..++.....   +..    ........+++....+|..++...+..+++.+..+.++....
T Consensus       293 ~~r~~~~~~l~i~~~~~~~~~ll~~~~~---~~~----~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~  365 (410)
T TIGR00885       293 ISYLAAHKVLMAYAIIGMALCLGSIFAG---GHV----GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI  365 (410)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHcC---ChH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence            8888988888877777777666655432   111    112222333455667799999999989877665555555544


Q ss_pred             HHHHHhhhcccCCC
Q 013453          428 MSLFKAAGPAGGGA  441 (442)
Q Consensus       428 ~~~g~~~gp~i~G~  441 (442)
                        +|+++.|.+.|+
T Consensus       366 --~Gga~~p~l~G~  377 (410)
T TIGR00885       366 --IGGGIVPPLQGF  377 (410)
T ss_pred             --hccchHHHHHHH
Confidence              999999998875

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=9.3e-29  Score=229.60  Aligned_cols=340  Identities=13%  Similarity=0.089  Sum_probs=248.1

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhh----HHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----IMGT  119 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~----~~~~  119 (442)
                      ..+.+..+...+..+...|.+|.+.+++|.+..+      +|++.+.+.+...++++++|+++||+|||+..    ..+.
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~   80 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS   80 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3456667777778889999999999999999999      99999999999999999999999999985433    2222


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      .+..+  ..+..+++++.+++.|+++|.+.+...| ..++..|+  +++|++.++......++|.+++|++++.+.+   
T Consensus        81 ~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~---  153 (382)
T TIGR00902        81 AIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG---  153 (382)
T ss_pred             HHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH---
Confidence            22222  2444678999999999999998777777 46666554  4789999999999999999999999999998   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (442)
                          .+|||.         .+.+.....++.. ..+.++|++++++++++  +                +.+..+..+++
T Consensus       154 ----~~g~~~---------~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~  201 (382)
T TIGR00902       154 ----MFDEQN---------ILAILTAGLAFML-IGFLIKPTIPPKDAIPE--D----------------ESQGDSAFIAL  201 (382)
T ss_pred             ----HcChhH---------HHHHHHHHHHHHH-HHHHcCCCCCCCccccc--c----------------ccccchhHHHH
Confidence                445544         3355443322222 23333443211111000  0                00112235678


Q ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      +|+|+++...+..++.......+.++.+.|..+      .|.++.+.|.+.....++.++... ..+++.||+++++.+.
T Consensus       202 l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~~-~~~~l~~r~g~~~~l~  274 (382)
T TIGR00902       202 LKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIFA-FSNKLFQNCSARDLLL  274 (382)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HhHHHHhhCCHHHHHH
Confidence            899999998888888888877888888877642      588999999999987888888776 7777788889999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHH-HHHHHHhhhcc
Q 013453          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPA  437 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~gp~  437 (442)
                      .+.+...+....+.+.+     ..+ .++....+.+.......+....++++. |++++++++++++. ...+|..+||.
T Consensus       275 ~~~~~~~~~~~~~~~~~-----~~~-~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~  347 (382)
T TIGR00902       275 ISAIACVGRWAIIGAIE-----AFP-LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTA  347 (382)
T ss_pred             HHHHHHHHHHHHHHhHh-----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877665532     122 233344555555556666777788887 99999999999874 56789999999


Q ss_pred             cCCCC
Q 013453          438 GGGAL  442 (442)
Q Consensus       438 i~G~l  442 (442)
                      ++|++
T Consensus       348 ~~G~l  352 (382)
T TIGR00902       348 FAGFI  352 (382)
T ss_pred             HHHHH
Confidence            88864

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=1.8e-28  Score=229.01  Aligned_cols=281  Identities=20%  Similarity=0.212  Sum_probs=213.2

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      ......+....+.+...+.+|.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||++++.+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence            445566677777778889999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCc
Q 013453          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (442)
Q Consensus       125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (442)
                      +.+++..+++++.+++.|+++|++.+...+ ..+++.|++|+++|++++++.+....+|..++|.+++.+.+        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~--------  152 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML--------  152 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            999999999999999999999999888777 59999999999999999999999999999999999998876        


Q ss_pred             ccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccc
Q 013453          204 FSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (442)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (442)
                              ..+|+..+.+.++..++.. +..+.+||+++..+++++  +.                   .+..++.++++
T Consensus       153 --------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~~~~~~~~~  203 (392)
T PRK10473        153 --------KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAAS--SK-------------------PRENSESLLNR  203 (392)
T ss_pred             --------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--ch-------------------HHHHHHHHhCH
Confidence                    3345554466665555543 345566776433211100  00                   01123456777


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHH
Q 013453          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (442)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (442)
                      +++...+...+.......+..+.+.+..     +++|+++.+.+......+++.+++.. ...++.||+++|+....+..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~r~g~~~~~~~~~~  277 (392)
T PRK10473        204 FFLSRLVITTLSVTVILTFVNTSPVLLM-----EQMGFSRGEYAIIMALTAGVSMTVSF-STPFALGIFKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence            7665544444333333333333343332     33688999999999988999999987 66777888899998888877


Q ss_pred             HHHHHHHHHHHH
Q 013453          363 LTIPLLTSYPYI  374 (442)
Q Consensus       363 ~~~~~~~~~~~~  374 (442)
                      +..++...+...
T Consensus       278 ~~~~~~~~~~~~  289 (392)
T PRK10473        278 LFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHHHH
Confidence            766666555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=2.6e-29  Score=235.23  Aligned_cols=349  Identities=14%  Similarity=0.099  Sum_probs=236.4

Q ss_pred             HHhHhcchhhchhHHHHHHHhcc--cccchhhhhHHHHHH-----HHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHH
Q 013453           51 LCTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVG-----SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (442)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~-----s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (442)
                      +.+.++...+.+..+.+.+++..  ++.+      .+.+.     +...++..+++++.|+++||+|||+++..+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~   76 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMG   76 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            45667777778888888877654  3333      34433     33445556789999999999999999999999999


Q ss_pred             HHHHHHhccchHH--------HHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          124 IFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       124 i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                      ++.++++++++++        .+++.|+++|++.+...+ ..+++.|++|+++|++..+..+.+..+|.++++.++..+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883        77 IGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998875        488999999999888777 5999999999999999999999999999999999887765


Q ss_pred             cccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccc
Q 013453          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (442)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (442)
                      ..       .+....- .++||.++.+.++..++........||++++.+++++                   +++....
T Consensus       157 ~~-------~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~  209 (394)
T TIGR00883       157 YL-------LGDDALL-EWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGP  209 (394)
T ss_pred             Hh-------cCHHHhh-ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCC
Confidence            31       1111101 4567777777666655555554556665432111100                   0011223


Q ss_pred             cccccccch--hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 013453          275 KKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (442)
Q Consensus       275 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (442)
                      .++.+++++  ++......++..........+.+.|...     ++|.+..+.+.......++..++.+ +.+++.||++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g  283 (394)
T TIGR00883       210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQ-----TLGLSANSALLVLMLSLILFFITIP-LSGALSDRIG  283 (394)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            445555554  5555555555555555566667766642     2578888999988888899999888 6667788889


Q ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHH-HHHHHH
Q 013453          353 PIMVARIAGVLTIPLL-TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSL  430 (442)
Q Consensus       353 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~  430 (442)
                      ||+.......+..+.. ........  ....+. ........+.......+.......|.+|++.|+++.++. +....+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  360 (394)
T TIGR00883       284 RRPVLIIFTVLAALLAVPLLMALLD--SGSFTL-FFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAI  360 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc--CCchHH-HHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHH
Confidence            8887665444333322 22211111  112222 222223333444456677788999999999999999985 455567


Q ss_pred             HHhhhcccCCC
Q 013453          431 FKAAGPAGGGA  441 (442)
Q Consensus       431 g~~~gp~i~G~  441 (442)
                      |..++|.+.|+
T Consensus       361 g~~~~p~~~g~  371 (394)
T TIGR00883       361 FGGFAPYIAAA  371 (394)
T ss_pred             HhhHHHHHHHH
Confidence            88899988775

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=1.6e-28  Score=226.21  Aligned_cols=328  Identities=17%  Similarity=0.100  Sum_probs=236.3

Q ss_pred             hcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccch
Q 013453           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (442)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~  134 (442)
                      .......+.+|.+.+++|.+.++      .+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   86 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG   86 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence            34466789999999999999999      9999999999999999999999999999999999999888888877 7789


Q ss_pred             HHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCC
Q 013453          135 FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (442)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (442)
                      ++.+++.|++.|++.+...+ ...++.|++| ++|+++++..+.+.++|..+++.+++.+.+       ..+       .
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-------~~~-------~  151 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ-------HSG-------G  151 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhh-------h
Confidence            99999999999999888776 4778888886 689999999999999999999999998876       111       1


Q ss_pred             cChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHH
Q 013453          214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (442)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (442)
                      .||..+...++..++.  ...++||.+++++++++                     ......++.+|+|.++...+..++
T Consensus       152 ~w~~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T TIGR00896       152 HWQQALAWWALPALLA--LLAWIPQVRRRVAANQT---------------------TTRLTPVRIWRSPLAWQVTVFFGL  208 (355)
T ss_pred             hHHHHHHHHHHHHHHH--HHHHhhhhccccCCCCC---------------------CCCCCCchhhcCHhHHHHHHHHHH
Confidence            2454445444433322  22334544322111000                     011234567888888877666666


Q ss_pred             HHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-chhHHHHHHHHHHHHHHHHHH
Q 013453          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYP  372 (442)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  372 (442)
                      ..........+.|.|+.+      .|+++.+.+...+...++.+++++ ..+++.||. ++|+....+..+..++...+.
T Consensus       209 ~~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T TIGR00896       209 QSGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGLL  281 (355)
T ss_pred             HHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence            666666666777777642      488999999999999999999998 555666776 566666666666666555444


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          373 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQN-RAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +....   ..+..    ..+.+.+.....+....... +..+++++++..++.+...+++.+++|.+.|+
T Consensus       282 ~~~~~---~~~~~----~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       282 FAPMH---GLWAW----ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             Hhhhh---HHHHH----HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43211   11111    12223333344455444444 43456778999999999999999999988875

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=1.8e-28  Score=225.88  Aligned_cols=319  Identities=24%  Similarity=0.364  Sum_probs=261.0

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .+....+...++.....+..|.+.+++|.+..+      .+++.+...++..+++++.|+++||+|||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence            345667778888888899999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCc
Q 013453          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (442)
Q Consensus       125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (442)
                      +.+...++++++.+++.|++.|++.+...+ ..+++.|++|+|+|++.+++.+....+|..++|.+++.+.+        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  148 (352)
T cd06174          77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE--------  148 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            999999999999999999999999888878 59999999999999999999999999999999999999988        


Q ss_pred             ccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccch
Q 013453          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (442)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (442)
                              ..+|+..+.+.++..++..+...+++                                            |.
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~  176 (352)
T cd06174         149 --------SLGWRWLFLILAILGLLLALLLLFLL--------------------------------------------RL  176 (352)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence                    33355555666666665554444443                                            34


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhH-HHHHHHH
Q 013453          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGV  362 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  362 (442)
                      ++...+..++..........+.+.+..+.     ++.+..+.+.......++..++.. ...++.||.++|+ .+..+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~  250 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGAL-LGGLLSDRLGRRRLLLLIGLL  250 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence            55566666666666666666777666532     478899999999999999999988 6666777888888 8888877


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +..++.........      .........+.+.......+....+..|..|+++|++..|+.+...+++..++|.+.|.
T Consensus       251 ~~~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~  323 (352)
T cd06174         251 LAALGLLLLALAPS------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL  323 (352)
T ss_pred             HHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666655321      22233344444555566678889999999999999999999999999999999988764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.7e-29  Score=232.06  Aligned_cols=338  Identities=16%  Similarity=0.197  Sum_probs=253.5

Q ss_pred             HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHH
Q 013453           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG  146 (442)
Q Consensus        69 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G  146 (442)
                      .+++.+.+|      .+++.+.++.|+.+++++.|++.||+|.|+++..+.++.++.+++...+.  +++.+++.|++||
T Consensus        66 ~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   66 GEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG  139 (466)
T ss_pred             ceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence            357777777      99999999999999999999999999999999999999999999998865  5568899999999


Q ss_pred             hhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHH
Q 013453          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  225 (442)
Q Consensus       147 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  225 (442)
                      ++.|...|+ ..+.+.|.|++||++..++...+..+|.+++-+++|++.+.      .+||+         .++++.+..
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s------~~GW~---------sifY~~g~~  204 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES------SLGWP---------SIFYVFGIV  204 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc------CCCCc---------hHHHHHHHH
Confidence            999999995 99999999999999999999999999999999999999982      15554         445888888


Q ss_pred             HHHHHHHHh-hccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHH
Q 013453          226 AFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  304 (442)
Q Consensus       226 ~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (442)
                      +++..++++ +..|+|.+++.-.++   +.+.+++...+.+. +++.+.+++++++++.+|...+..++.+.....+..+
T Consensus       205 g~i~~~~w~~~~~d~P~~h~~is~~---El~~I~~~k~~~~~-~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y  280 (466)
T KOG2532|consen  205 GLIWFILWFLFYSDSPSKHPNISEK---ELKYIEKGKSEAHV-KKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTY  280 (466)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCHH---HHHHHHhccccccc-CCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876654 455666553332211   11222222222111 1115778999999999999999999999999999999


Q ss_pred             HHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhch---------hHHHHHHHHHHHHHHHHHHHHH
Q 013453          305 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---------IMVARIAGVLTIPLLTSYPYIA  375 (442)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  375 (442)
                      .|.|+...     +|++..+.|++.++..+...+..+ +.+.+.|+..+         |..-.++....+++++.+.+..
T Consensus       281 ~PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k~-~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  281 LPTYLKEV-----LGFDVRETGFLSALPFLAMAIVKF-VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             hhHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            99998865     799999999999999999999988 66666666543         3333445555555565555544


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                      ..+   .+..+.+..+..+.  .+..............|++.+..+|+.+....+.+.++|.+.|.+
T Consensus       355 ~~~---~~~a~~~l~~~~~~--~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  355 DEH---RLLAVILLTIAIGL--SGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             CCc---chHHHHHHHHHHHH--cccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            322   22222222221111  122222222222222568999999999999999999999998864

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.8e-29  Score=219.26  Aligned_cols=356  Identities=14%  Similarity=0.106  Sum_probs=273.3

Q ss_pred             CCChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhH
Q 013453           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (442)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (442)
                      +..+++++.-++...+..+...+..++.+.+.+++|+|+.|      .+++.+...+...+..++.|.+.||+|.|++..
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            34456677666677777777788888889999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccch---HHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          117 MGTASVVIFNTLFGLSVN---FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       117 ~~~~~~~i~~~~~~~a~~---~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      ++.++..+-.+..+++.+   ++++++.+++.|++.+.+.....++++++|||++|.++|+.. ..++|..+...++..+
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            999999999999998754   459999999999999999988999999999999999999999 9999999999999998


Q ss_pred             ccccccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccc
Q 013453          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (442)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (442)
                      ..       ..|+.      .|+....+.....++. +..++...|.|+.+...++..                     +
T Consensus       163 ~~-------~~g~~------~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~  208 (417)
T COG2223         163 AV-------AFGFL------AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------P  208 (417)
T ss_pred             HH-------HHhhH------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------h
Confidence            87       34410      1444445555544443 444555666554322211111                     0


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 013453          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (442)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (442)
                      ...+.++++++.|.+.+.++..+..+.++..++|.|+.+.     ++.+..++|.......+.+.+.+. .+++++||+|
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~Rp-~GG~LsDR~G  282 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALARP-LGGWLSDRIG  282 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHHh-ccchhhhhcc
Confidence            2345678899999999999999999999999999998754     899999999999999999999998 8999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHH
Q 013453          353 PIMVARIAGVLTIPLLTSYPYIAMLSGF-GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  431 (442)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  431 (442)
                      .+++....+..++++..+..+....... ..........+....+...-....+.++...+| ++.|.+.|+....+.+|
T Consensus       283 g~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lG  361 (417)
T COG2223         283 GRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLG  361 (417)
T ss_pred             chhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhcccc
Confidence            9998888888888887776665422211 111112222222222222233445666666565 57899999999999999


Q ss_pred             HhhhcccCC
Q 013453          432 KAAGPAGGG  440 (442)
Q Consensus       432 ~~~gp~i~G  440 (442)
                      +..-|...|
T Consensus       362 Gf~lp~~~g  370 (417)
T COG2223         362 GFFLPLAFG  370 (417)
T ss_pred             ccchhHHHH
Confidence            877666544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=2.6e-27  Score=219.99  Aligned_cols=334  Identities=13%  Similarity=0.085  Sum_probs=232.5

Q ss_pred             HHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCc----hhhHHHHHHHHHH
Q 013453           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF  125 (442)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~~~~~~~~~~i~  125 (442)
                      .+...++.+...|.+|.+.+|+|.+..+      .|++.+++.++..++++++|+++||+|||    +.+.+...+.  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            4455566788899999999999999999      99999999999999999999999999994    3333222222  2


Q ss_pred             HHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcc
Q 013453          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (442)
Q Consensus       126 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (442)
                      ......+++++.+++.|++.|++.+...|. .+++.++  +++|+++.+......++|.++||++++++.+         
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---------  153 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---------  153 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            233444688999999999999988887774 6676665  4568889999999999999999999999998         


Q ss_pred             cccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchh
Q 013453          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (442)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (442)
                             .++||..++..++..++..+...+.||++++.++++   +                .++...++++++|+|++
T Consensus       154 -------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~i~~~~~~  207 (382)
T PRK11128        154 -------WFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQ---Q----------------ESAGWPAWKALLKEPTV  207 (382)
T ss_pred             -------HcChhHHHHHHHHHHHHHHHHHHccCCCCCcccccc---c----------------cccccchHHHHHcChhH
Confidence                   344555546555444433333344454322111100   0                00112356788999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHH
Q 013453          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  364 (442)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (442)
                      +...+..++.........++.+.|..      +.|+++.+.|.+.+...++.++... ..+++.||+++++.+..+....
T Consensus       208 ~~~~~~~~l~~~~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        208 WRFLLCVSLLQGSHAAYYGFSAIYWQ------AAGYSASTIGYLWSLGVVAEVLIFA-FSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHH------HCCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHH
Confidence            88877777766666666667776653      2588899999999888888887777 6666778889999888887777


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHH-HHHHHhhhcccCCCC
Q 013453          365 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGAL  442 (442)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~gp~i~G~l  442 (442)
                      .+....+....     ..+. ..+..++.+.......+....+..+. +++++++..++.+.. ...|..+||.++|.+
T Consensus       281 ~~~~~~~~~~~-----~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        281 VVRWGLMGSTT-----ALPW-LIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             HHHHHHHHhhh-----hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76655544322     2222 22233333333333455566666664 667789999988744 567778999888753

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=4.3e-27  Score=224.27  Aligned_cols=353  Identities=13%  Similarity=0.134  Sum_probs=242.0

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc-----CCchh
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV  114 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~  114 (442)
                      +|+...++...+..++......+.+|.+.++.|.+..+      +|.+ +.....+ ++.+++|+++||+     ||||.
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            45566777778888888888999999999999999888      8886 4444444 6899999999999     99986


Q ss_pred             -hHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHh
Q 013453          115 -IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (442)
Q Consensus       115 -~~~~~~~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (442)
                       ++.+.++.+++...+++.   ++++.+.+.+++.|++.+...+ ..+++.|++|+|+|+++.++...+..+|.++++.+
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l  162 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL  162 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             567777777777777664   4788899999999998888777 58999999999999999999999999999999999


Q ss_pred             hhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhc
Q 013453          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (442)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (442)
                      ++++.+       .        .++||..+.+.+++.++..+..+++||+++..++ ++  +..               +
T Consensus       163 ~~~l~~-------~--------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~-~~--~~~---------------~  209 (491)
T PRK11010        163 ALWLAD-------R--------YLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV-PK--TLE---------------Q  209 (491)
T ss_pred             HHHHHh-------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-cc--chh---------------h
Confidence            999886       1        1356666677777766666555567876432111 00  000               0


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHH-HHHHHHHHHHhhHHHHHH
Q 013453          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA-ITGFSLLVFQLSLYPFLE  348 (442)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  348 (442)
                      +...+.++.++++..+...+..+++.........+.+.|+.     +..|++..+.+.... ...++.+++.+ +.+++.
T Consensus       210 ~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~-----~~~G~s~~~~g~~~~~~g~i~~iiG~l-l~G~L~  283 (491)
T PRK11010        210 AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLI-----RGVGFDAGEVGLVNKTLGLLATIVGAL-YGGILM  283 (491)
T ss_pred             hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            00113445666777666555555555444444455555543     236899999999875 44567777777 778888


Q ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHH
Q 013453          349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  428 (442)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  428 (442)
                      ||+++++.+..+..+..+....+...... ....+. +....++.........+...+...+..+++.+++..|+.+...
T Consensus       284 dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~-l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~  361 (491)
T PRK11010        284 QRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYS-MGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALS  361 (491)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            88888877666555444433322221111 111221 1111111111122223445677777788888999999999999


Q ss_pred             HHHHhhhcccCCC
Q 013453          429 SLFKAAGPAGGGA  441 (442)
Q Consensus       429 ~~g~~~gp~i~G~  441 (442)
                      .+|..+++.+.|+
T Consensus       362 ~lg~~~~~~~~G~  374 (491)
T PRK11010        362 AVGRVYVGPVAGW  374 (491)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888777764

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=7.7e-27  Score=215.16  Aligned_cols=331  Identities=11%  Similarity=0.150  Sum_probs=232.5

Q ss_pred             chhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc-----CCchhh-HHHHHHHHHHHHHHh
Q 013453           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPVI-IMGTASVVIFNTLFG  130 (442)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~~-~~~~~~~~i~~~~~~  130 (442)
                      .....+.+|.+.+|+|+|.++      .|++... .+...+ .+++|+++||+     ||||.+ +.+.++.++.....+
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~   75 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS   75 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999999999      9999755 555555 99999999998     899974 567777777777777


Q ss_pred             cc---chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccc
Q 013453          131 LS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (442)
Q Consensus       131 ~a---~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (442)
                      +.   .+.+.+....++.+++.+...+ ..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+       ..|.
T Consensus        76 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g~  148 (356)
T TIGR00901        76 FLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEFA  148 (356)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hccc
Confidence            76   4666677777888888777777 59999999999999999999999999999999999999887       3332


Q ss_pred             cccccCCcChhHHHHHHHHHHHHHHHHh-hccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccch--
Q 013453          207 ESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP--  283 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  283 (442)
                      ... .+++||.++.+.++..++..+..+ ..||+++..+. ++  +..               ++.....++++++|.  
T Consensus       149 ~~~-~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~~--~~~---------------~~~~~~~~~~~~~~~~~  209 (356)
T TIGR00901       149 NTG-LITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-PK--PLT---------------QAVLKPIREFFQRKNMI  209 (356)
T ss_pred             ccc-cccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-ch--hHH---------------HHHHHHHHHHHHhcCch
Confidence            222 256688888888877766655444 35664321111 00  000               000113345666665  


Q ss_pred             -hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHH-HHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          284 -LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                       ++...+..++..........+.+.|...      .|+++.+.+.+....+. ..+++.+ +++++.||+++|+.+..+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~~-~~g~l~~r~g~~~~l~~~~  282 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGGL-IGGIIMQPLNILYALLLFG  282 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHH
Confidence             5655555566666666666777776642      58899999988877664 5566665 7778888889988887777


Q ss_pred             HHHHHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHH
Q 013453          362 VLTIPLLTSYPYIAMLSG------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  429 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  429 (442)
                      ++..+...++.+......      ...+ ......++.++......+...++..|..|+++||+..|+.++..+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       283 IVQALTNAGFVWLASNGHHDGITFPHLL-MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            776666554444321110      1122 233333344455566778889999999999999999999887764

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.96  E-value=2.3e-26  Score=214.48  Aligned_cols=339  Identities=14%  Similarity=0.166  Sum_probs=216.4

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHH-HHHhhhhhhhhhhcccCCchhh-HHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGT  119 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~~-~~~~  119 (442)
                      ....++..++..+......|.+|.+ .+++|.+.++      .|++.+...+ +..++.++.|+ +||+||||.+ ..+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~   89 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCC   89 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHH
Confidence            4456667888888888888988765 6789999999      9999876655 55566655555 9999999875 4556


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchh--hhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQA--LGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +...++..+.+++++++.+++.+.+.|...+...| ..+++.|+.++++|.  ...+..+.+.++|.++||++++.+.+ 
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~-  168 (393)
T PRK15011         90 LLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM-  168 (393)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH-
Confidence            66677888888999999887666555544445566 478888887766553  34578889999999999999999998 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccc
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (442)
                                     ..+||..+...++..++.. ...+++||.++.++++++   +.                   ...
T Consensus       169 ---------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~  211 (393)
T PRK15011        169 ---------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG---TL-------------------EAP  211 (393)
T ss_pred             ---------------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc---cc-------------------ccc
Confidence                           3445555577766665554 345567776433211100   00                   000


Q ss_pred             ccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhH
Q 013453          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (442)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (442)
                      ++  +.+..+...............+..+.|.|+.+     ++++++.+.+.+.....++.+++.+ +.+++.||+++|+
T Consensus       212 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-----~~~~~~~~~g~~~~~~~~~~i~~~~-~~G~l~dr~g~~~  283 (393)
T PRK15011        212 RR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIIN-----ELHLPEKLAGVMMGTAAGLEIPTML-IAGYFAKRLGKRF  283 (393)
T ss_pred             cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHH
Confidence            00  11222333333333333344444556665543     3688888999888777777777777 6677778889888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhh
Q 013453          356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  435 (442)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  435 (442)
                      ....+.....+.+......   ++  .+... ......+.......+.......|..| ++++++.++.+...++|..++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~---~~--~~~~l-~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g  356 (393)
T PRK15011        284 LMRVAAVAGVCFYAGMLMA---HS--PAILL-GLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIA  356 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH---hh--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHH
Confidence            7766655444433322221   11  11111 11111111111222334455677777 469999999999999999999


Q ss_pred             cccCCC
Q 013453          436 PAGGGA  441 (442)
Q Consensus       436 p~i~G~  441 (442)
                      |.++|.
T Consensus       357 ~~l~G~  362 (393)
T PRK15011        357 GSLAGI  362 (393)
T ss_pred             HHHHHH
Confidence            988875

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.96  E-value=3e-27  Score=223.28  Aligned_cols=353  Identities=20%  Similarity=0.187  Sum_probs=264.7

Q ss_pred             CChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 013453           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (442)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (442)
                      .+.+.+..+|.+.+++.++..+....++.+..++.-|+..      .+++..+..+...+.++++|.++||++|||+++.
T Consensus         7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili~   80 (524)
T PF05977_consen    7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILIL   80 (524)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence            3446677888999999999999999999998888888887      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-----cchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhh
Q 013453          118 GTASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (442)
Q Consensus       118 ~~~~~~i~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (442)
                      +.++..+..+..++     ..+.+.+++.-++.|++.+...|+ ++++.|..|+++...+.++.+...++..++||.++|
T Consensus        81 ~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen   81 SQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            98877666554443     247899999999999999999996 999999999999999999999999999999999999


Q ss_pred             hhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccc
Q 013453          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (442)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (442)
                      .+..                ..+....+.+.++..++.+..+...+.+++..+.++   +..              .+.-
T Consensus       161 ~Lva----------------~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~---e~~--------------~~~l  207 (524)
T PF05977_consen  161 ILVA----------------FFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR---ERF--------------FSAL  207 (524)
T ss_pred             HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHccccccccccch---hhh--------------hhhH
Confidence            9987                333344446666555554444444443222111111   111              0011


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013453          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (442)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (442)
                      +...+.+.++|.+...++..+++++....+...+|.+..     +.+|.++...|++.+..+++.+++++ ...++.++.
T Consensus       208 ~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~-----~~l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~~  281 (524)
T PF05977_consen  208 REGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFAR-----DVLGGGASGYGLLLAAFGVGAILGAL-LLPRLRRRL  281 (524)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHH-----HHhCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhccc
Confidence            223445556777766666666666555555566666554     33688999999999999999999999 666677887


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHH
Q 013453          352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  431 (442)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  431 (442)
                      ++++++..+.+..+++++.+.+..     ..+. ..+..++.++..........+...+..|++.||++++++++....+
T Consensus       282 ~~~~lv~~~~~~~a~~~~~lal~~-----~~~~-~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~  355 (524)
T PF05977_consen  282 SSRRLVLLASLLFALALLLLALSP-----SFWL-ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGG  355 (524)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcch-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHH
Confidence            888888777777776666655532     2232 2233334445555566667788889999999999999999999999


Q ss_pred             HhhhcccCCC
Q 013453          432 KAAGPAGGGA  441 (442)
Q Consensus       432 ~~~gp~i~G~  441 (442)
                      ..+|..+.|.
T Consensus       356 ~~lGsll~G~  365 (524)
T PF05977_consen  356 MPLGSLLWGF  365 (524)
T ss_pred             HHHHHHHHHH
Confidence            9999888775

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.2e-29  Score=213.94  Aligned_cols=354  Identities=19%  Similarity=0.179  Sum_probs=257.5

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcc--------------------------------------------cccch
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQI--------------------------------------------AKREE   78 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~   78 (442)
                      +..+..+.+.+.+....+.|.+|.+..|.+.                                            ....+
T Consensus        23 lviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~  102 (464)
T KOG3764|consen   23 LVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLD  102 (464)
T ss_pred             EEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcc
Confidence            3356667777777777888888877766652                                            00001


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HH
Q 013453           79 DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KA  157 (442)
Q Consensus        79 ~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~  157 (442)
                      .....+|++.+.+.+.+.+..++.|.+.||+|+|..+++|++.+...++++++.+++++++++|.+||+|.+...++ .+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            11223999999999999999999999999999999999999999999999999999999999999999999999886 99


Q ss_pred             Hhhhhcccc-chhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc
Q 013453          158 YACEIFREE-HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (442)
Q Consensus       158 ~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (442)
                      +++|.+|++ +|++++|+...+.++|..+||++||.+++                ..+++.+|.+.+++.++...+.+++
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999976 57999999999999999999999999999                6667888899999888877766665


Q ss_pred             cccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccC
Q 013453          237 PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG  316 (442)
Q Consensus       237 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (442)
                      -|+.+.+++..                      ++....++++++|.++.........+.........+++|....    
T Consensus       247 i~p~~~~~~~~----------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~----  300 (464)
T KOG3764|consen  247 IEPTEMDPDST----------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET----  300 (464)
T ss_pred             eCccccCcccc----------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh----
Confidence            55433222111                      1234567899999988766666555555555556666665533    


Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 013453          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  394 (442)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (442)
                       +..+.-+.|..+....+...++.. +.+.+.+|++  |......+.+..++.+....+.....  ..|+......+..+
T Consensus       301 -m~~p~w~~G~~fLp~~~~y~ig~~-lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~--~L~vp~~~l~~~i~  376 (464)
T KOG3764|consen  301 -MFTPGWEVGLAFLPASLSYAIGTN-LFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA--QLWVPNFGLGFGIG  376 (464)
T ss_pred             -ccCCCcceeeeecccccchhccCc-hHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH--HHhhhhHHHHHHHH
Confidence             443344788888888899999988 5555666666  43344445555555555555544332  23333444444344


Q ss_pred             HHHHHHHHhhhhhhcccCC--hhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          395 LLSVSIITGLFILQNRAVD--QDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                      .......|....++.....  -+.-|.+.++......+|.++||.++|.+
T Consensus       377 ~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i  426 (464)
T KOG3764|consen  377 LADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL  426 (464)
T ss_pred             HHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchh
Confidence            4444455554444433221  12668999999999999999999999864

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=7.5e-27  Score=224.41  Aligned_cols=359  Identities=13%  Similarity=0.094  Sum_probs=243.0

Q ss_pred             chhhchhHHHHHHHhcccccchhhh-hHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH
Q 013453           57 ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (442)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~  135 (442)
                      .+...+....+.++...+..+.... ...+|+.+...++..+++++.|+++|++|||+.++++.+++.++.+++++++|+
T Consensus        63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~  142 (513)
T KOG0254|consen   63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW  142 (513)
T ss_pred             cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3455566666665433222221110 125899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCc
Q 013453          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (442)
                      ++++++|+++|+|.|.... ++.+++|..|++.||...+..+....+|..++..++....+       .        .++
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~-------~--------~~~  207 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK-------V--------YAG  207 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-------C--------Ccc
Confidence            9999999999999888777 69999999999999999999999999999999555544433       0        135


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchh--hhhhhhh--hhhhhh-----------hhh-cccccccccc
Q 013453          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDALES--ASAEVK-----------EEE-GREATPKKSL  278 (442)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~--~~~~~~-----------~~~-~~~~~~~~~~  278 (442)
                      ||.++.+..+.+++..+..+++||+|++..++.+..+.  ....+..  ..+...           +.. .+....+.++
T Consensus       208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  287 (513)
T KOG0254|consen  208 WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGEL  287 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHh
Confidence            77777888888888877788999999885443322221  1112211  000000           000 0111123444


Q ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH
Q 013453          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (442)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (442)
                      ++........+...+..+.+.........|.  +...+..|.+... .......++..+++.. +..++.||.|||+.+.
T Consensus       288 ~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~--~~if~~~g~~~~~-~~~~~~~~~v~~~~t~-~~~~lvd~~gRr~lll  363 (513)
T KOG0254|consen  288 FSPKVRKRLIIGLLLQLFQQLTGINYVFYYS--TTIFKSAGLKSDT-FLASIILGVVNFLGTL-VATYLVDRFGRRKLLL  363 (513)
T ss_pred             cCcchHHHHHHHHHHHHHHHHhCCceEEeeh--HHHHHhcCCCCch-HHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHH
Confidence            4422333344444444444443322222222  2223334554332 3334444566666665 4566777779999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHH
Q 013453          359 IAGVLTIPLLTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  431 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  431 (442)
                      .+.....++.+++........       ...+..+....++...+..+..+..+.+.+|.+|.+.|+++.++........
T Consensus       364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            998888888777665443321       2345555566666667777888889999999999999999999999988876


Q ss_pred             Hhh
Q 013453          432 KAA  434 (442)
Q Consensus       432 ~~~  434 (442)
                      ..+
T Consensus       444 ~~~  446 (513)
T KOG0254|consen  444 NFL  446 (513)
T ss_pred             HHH
Confidence            654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.96  E-value=4.7e-27  Score=248.61  Aligned_cols=363  Identities=17%  Similarity=0.077  Sum_probs=244.8

Q ss_pred             hhHHHHHHHHHHhHhcch-hhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPIS-SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +.+...+++.++..+... ......+.+.++++.+...    ...+++.+++.+++.++++++|+++||+|||++++++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            344445555555544433 3344445666667654332    22799999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh---ccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       120 ~~~~i~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++..+..++..   .+++++.+++.|+++|++.+...++ .+++.|++|+++|++++++.+.+..+|.++|+.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666555443   4578999999999999999998885 9999999999999999999999999999999999999986


Q ss_pred             ccccCCCccccc--ccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccc
Q 013453          196 PAEKYPNLFSSE--SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (442)
Q Consensus       196 ~~~~~~~~~gw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (442)
                      .       .++.  ..+ .+.++..+++.....++.++..+.+||.++....+.+..+..  .           ......
T Consensus       165 ~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~  223 (1146)
T PRK08633        165 S-------VNGNTPSEI-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL--F-----------PKLLWR  223 (1146)
T ss_pred             h-------hcccccccc-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc--c-----------HHHHHH
Confidence            2       1100  000 111222222333333334445556777664432211000000  0           000112


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChh-HHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 013453          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILG  352 (442)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (442)
                      .++.+++++.++...+..++..........+++.|+..     .+|++.. +.+++.+..+++.+++.+ +.+++.||.+
T Consensus       224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~s~~~~~g~~~~~~~ig~~~g~~-~~g~l~~r~~  297 (1146)
T PRK08633        224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKE-----VLGLDNTFQVQYLLAASAIGIGIGSL-LAGRLSGRHI  297 (1146)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HhCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHhCCce
Confidence            34567788888877776666666555566666666543     3688888 899999999999999988 6677777778


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHH
Q 013453          353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK  432 (442)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  432 (442)
                      +++.+.++.++.+++.+++.+..     ..+. ..+..++.+++.....+...+++.+..|++.||+++|+.+++.++|.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~  371 (1146)
T PRK08633        298 ELGLVPLGALGLALSLFLLPTAP-----SLAS-VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGM  371 (1146)
T ss_pred             EccchhHHHHHHHHHHHHHHHhh-----hHHH-HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHH
Confidence            77777666666665555544432     1222 22333333444444556677888888999999999999999999988


Q ss_pred             hhhcccCC
Q 013453          433 AAGPAGGG  440 (442)
Q Consensus       433 ~~gp~i~G  440 (442)
                      ++++.+++
T Consensus       372 ~~~~~~~~  379 (1146)
T PRK08633        372 LLFLALTT  379 (1146)
T ss_pred             HHHHHHHH
Confidence            77765543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4e-27  Score=218.83  Aligned_cols=345  Identities=15%  Similarity=0.096  Sum_probs=245.1

Q ss_pred             HHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 013453           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (442)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~  143 (442)
                      +-.+.+|.+....+      .+.+.+++.++++++++++|.+.||++..+.+....+++++..++.+...|++.+++.|+
T Consensus        69 l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~  142 (495)
T KOG2533|consen   69 LSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRF  142 (495)
T ss_pred             HcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            33455888888888      999999999999999999999999999999999999999999988888999999999999


Q ss_pred             HHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHH
Q 013453          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  222 (442)
Q Consensus       144 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  222 (442)
                      +.|+.++..+|+ ..+++.|+.++||++.++++.+..++|.++|++++..+.+ ..+.....|||+.|         ++.
T Consensus       143 llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~~~~~~~~gW~~~F---------iI~  212 (495)
T KOG2533|consen  143 LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-LNGSGGLAGWRWLF---------IIE  212 (495)
T ss_pred             HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-hcCCCCcCCceeeh---------hHH
Confidence            999999999995 9999999999999999999999999999999999999765 22222355665555         888


Q ss_pred             HHHHHHH-HHHHhhccccCCCCCCCCccchhh-hhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhh
Q 013453          223 SLFAFGV-TIAAFWLPETLHRHNDDDDSCDVS-YDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA  300 (442)
Q Consensus       223 ~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (442)
                      +++.++. ++..+++|+.|.+.+-.+++++.. .++.++...+..+++ .+....++.+++|.+|...+..++......+
T Consensus       213 G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~  291 (495)
T KOG2533|consen  213 GVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPGVWPFSLCYFFLKLVNYG  291 (495)
T ss_pred             HHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchhHHHHHHHHHHHhhcccc
Confidence            8777766 456778999887543222222111 112221111111111 4556778899999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh----hchhHHHHHHHHHHHHHH-HHHHHHH
Q 013453          301 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGPIMVARIAGVLTIPLL-TSYPYIA  375 (442)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~  375 (442)
                      +..+.|+++..     +.|++..+++.+..+..++++++.+ +.+++.||    ..++........+..... ..+....
T Consensus       292 ~~~~lpl~l~~-----~~~~s~~~a~~ls~~~~~~g~v~~i-~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~  365 (495)
T KOG2533|consen  292 FSYWLPLYLKS-----NGGYSELQANLLSTPYDVGGIVGLI-LAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAA  365 (495)
T ss_pred             HHHHHHHHHHc-----CCCcChHHhccccchHHhhhHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999875     3578999999999999999999988 77777777    344444433333222222 2222221


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh-hhhHHHHHHHHHHHHHHhhhcc
Q 013453          376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD-QRGAANGIAMTGMSLFKAAGPA  437 (442)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~gp~  437 (442)
                      .    ...  .....+..........+......++....+ ++-+..+......+.+++++|.
T Consensus       366 ~----~~~--~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  366 V----LPG--AYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             c----chH--HhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence            0    111  111122222223334455556666655444 4444555555555555555554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.96  E-value=3.8e-26  Score=213.73  Aligned_cols=348  Identities=12%  Similarity=0.024  Sum_probs=231.8

Q ss_pred             HHHHHHHHhHhcchhhchhHH-HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCC-chhhHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASV  122 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~  122 (442)
                      .+....+..+.......|.++ .+.+++|.+..+      .|++.+++.++..++++++|+++||+|| |+++.++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            355666777777777766665 555779999999      9999999999999999999999999965 77888888888


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhh--------hhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYAC--------EIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       123 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      .+...+..+.++++.+++.|++.|++.+...+ ..++..        |......|.+..|      .+|.++||.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        80 ALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence            88888888999999999999999998666655 344322        2233334555544      47888999988877


Q ss_pred             ccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccc
Q 013453          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (442)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (442)
                      ..                ...| .++++.++..++..+..+++||+++.+++++.  + .              ++..+.
T Consensus       154 ~~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~-~--------------~~~~~~  199 (418)
T TIGR00889       154 DI----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAKM--S-I--------------KVMLGL  199 (418)
T ss_pred             cc----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCcccccc--C-H--------------HHHhhh
Confidence            42                2122 23445555555555555677886532211110  0 0              000111


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCc--ccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013453          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG--LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (442)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (442)
                      ..++++|+|+++...+..++..........+.+.+..+.-....  -+++....+...+...+..+++.+ ..+++.||+
T Consensus       200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~-~~g~l~dr~  278 (418)
T TIGR00889       200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFIL-TIPFFLKRF  278 (418)
T ss_pred             hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            23457888888777666666555444444555555432100000  123456778899998889999887 666677888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHH-HHHHH
Q 013453          352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSL  430 (442)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~  430 (442)
                      ++|+.+..+.++..+...++.....  ........++..++.+.......+....++.|.+|+++|++++|+.+ ....+
T Consensus       279 g~r~~l~~~~~~~~v~~~l~~~~~~--~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~l  356 (418)
T TIGR00889       279 GIKKVMLLSLVAWALRFGFFAYGDP--EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGF  356 (418)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhh
Confidence            9999998888877776655544211  11111222233333333333445666788899999999999999997 56789


Q ss_pred             HHhhhcccCCC
Q 013453          431 FKAAGPAGGGA  441 (442)
Q Consensus       431 g~~~gp~i~G~  441 (442)
                      |.++||.++|+
T Consensus       357 g~~iGp~l~G~  367 (418)
T TIGR00889       357 GSLLGYILSGV  367 (418)
T ss_pred             HHHHHHHHHHH
Confidence            99999999885

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=1e-26  Score=245.04  Aligned_cols=320  Identities=15%  Similarity=0.083  Sum_probs=225.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH---HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~---~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i  159 (442)
                      .++..+++.+++.++++++|+++||+|||+++..   ..+...+..+.....+++++++++|+++|++.+...|+ .+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            7888999999999999999999999999998633   22233333333334589999999999999999999885 9999


Q ss_pred             hhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhcccc
Q 013453          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (442)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (442)
                      .|++|+++|++++++.+++.++|.++||++++++.+                ..+|+..++..++..++.++..+++|++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI----------------SGNFVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------------ccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999998                3345555455555555555566667766


Q ss_pred             CCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCccc
Q 013453          240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (442)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (442)
                      +......+...... +              +....++.+.+++.++...+..++..+....+..++|.|....     +|
T Consensus       198 ~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g  257 (1140)
T PRK06814        198 GNAAPDLKIDRNII-R--------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG  257 (1140)
T ss_pred             CCCCCCCeeccchH-H--------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence            43322111100000 0              0112356677889998888887777777777777888777533     68


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH---------------HhhchhhHH
Q 013453          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA---------------MLSGFGLAF  384 (442)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~  384 (442)
                      .++.+.|.+.+..+++.+++.++ .+++.++..+++.+..+.++..++.+.+.+..               .......+.
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~~-~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSFL-ASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR  336 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHH-HHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence            89999999999999999999984 44555444444444444433333333222210               000012222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          385 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                       +.+..++.+++.....+...+++.+.+|++.+|+++|+.++...++..+++.+.|.
T Consensus       337 -~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~  392 (1140)
T PRK06814        337 -ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILAL  392 (1140)
T ss_pred             -HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHH
Confidence             22333334445555666788889999999999999999999999999999887664

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.95  E-value=1.5e-25  Score=212.55  Aligned_cols=377  Identities=13%  Similarity=0.096  Sum_probs=246.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHH---hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~  116 (442)
                      +.++.++...+...++.+...+.+|.+.++   +|.+..+      .+++.+.+.++..++++++|+++|| +|||+++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            446677778888888888888889888654   8999988      9999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccc---hhhhhhhhhHhhhhHHHHHHHhhhh
Q 013453          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF  192 (442)
Q Consensus       117 ~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~  192 (442)
                      ++.++.+++.++.+++++++.++++|++.|++.|...| ..++++|++|+++   |++++++++.+.++|.++||.++++
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888 5899999998764   8889999999999999999999999


Q ss_pred             hccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCC--CC--Cccchhhhhhh-----------
Q 013453          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DD--DDSCDVSYDAL-----------  257 (442)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~--~~~~~~~~~~~-----------  257 (442)
                      +.+                ..+|+..+.+.++..++..+...+.++..++.+  ++  ++++++.....           
T Consensus       164 l~~----------------~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (475)
T TIGR00924       164 IAE----------------NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVF  227 (475)
T ss_pred             HHH----------------hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Confidence            987                334555556655544444433333332211111  00  00000000000           


Q ss_pred             hhh---hhh-h----------------hhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCc
Q 013453          258 ESA---SAE-V----------------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  317 (442)
Q Consensus       258 ~~~---~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (442)
                      ...   .+. .                .+...++.....+-.|...+....+...++...+....+.++++.......+-
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~  307 (475)
T TIGR00924       228 FCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEM  307 (475)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence            000   000 0                00000000000111122233344444445555555555556655543211111


Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHhhHHH---HHHHh-hchhHHH--HHHHHHHHHHHHHHHHHHHhh---chhhHHHHHH
Q 013453          318 LNYSTQMVGEVLAITGFSLLVFQLSLYP---FLERI-LGPIMVA--RIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNC  388 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  388 (442)
                      .+++ ...+.+.+.+++..++.+++..+   .+.|| .+++...  .++.++..+++..+.+.....   ......+.+.
T Consensus       308 ~~~~-ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~  386 (475)
T TIGR00924       308 LGMS-VPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVL  386 (475)
T ss_pred             cceE-ECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHH
Confidence            1111 22667777888888887775544   23333 2223333  556666666665554321111   1123334555


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          389 ASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      ..++.+.+.....|...++..+..|++.||+.+|+......+|..+++.+.+
T Consensus       387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~  438 (475)
T TIGR00924       387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT  438 (475)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677788888999999999999999999999999999999998876543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.95  E-value=2e-25  Score=208.89  Aligned_cols=342  Identities=15%  Similarity=0.197  Sum_probs=228.1

Q ss_pred             HHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc-----CCch-hhHHHHH
Q 013453           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA  120 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~-~~~~~~~  120 (442)
                      ....+.+++..+.....+|.+.++.|.+.++      +|++..+...  .+..+++|+++||+     |||| .+.++.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence            3456677778888889999999999999999      9999777665  59999999999999     8876 6788888


Q ss_pred             HHHHHHHHHhcc---chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       121 ~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +.+++..+.++.   ++++.+++..++.++..+...+ ..+++.|++|+|+|+++.++...+.++|..+++.+++.+.+ 
T Consensus        77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~-  155 (402)
T PRK11902         77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD-  155 (402)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh-
Confidence            888877777776   3577788888888888788877 49999999999999999999999999999999999998886 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccc
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (442)
                            .        .++||..+.+.++..++..+..++.||++++++++++ .+   +              +.....+
T Consensus       156 ------~--------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~-~~---~--------------~~~~~~~  203 (402)
T PRK11902        156 ------R--------VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRS-LG---E--------------AVVGPLR  203 (402)
T ss_pred             ------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccch-hH---H--------------HHHHHHH
Confidence                  1        1356666677777666655555667776543211110 00   0              0112355


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHH-HHHHHHhhHHHHHHHhhchhH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIM  355 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  355 (442)
                      +++|+|.++..++..++..........+.+.++.     +++|+++.+.+......+. +.+++.. +.+++.||+++++
T Consensus       204 ~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-----~~~G~~~~~~g~~~~~~~~~~~i~g~~-~~g~l~~r~g~~~  277 (402)
T PRK11902        204 DFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLI-----RGAGFSAGEVGIVNKTLGLAATIVGAL-AGGTLMVRLGLYR  277 (402)
T ss_pred             HHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HhcCCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhHHH
Confidence            6889998887776666655443333233333322     3368999999998866554 4667666 7778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH---HHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHH
Q 013453          356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCAS---VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK  432 (442)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  432 (442)
                      ....+.....+....+......++ ..+.......   +..+............++++..|.++++    +.+....++.
T Consensus       278 ~l~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~  352 (402)
T PRK11902        278 SLMLFGVLQAVSNLGYWVLAVTPK-HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGR  352 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHH
Confidence            776666555544433322221111 1222221111   2233334444556677777777766554    3444444555


Q ss_pred             hhhcccCC
Q 013453          433 AAGPAGGG  440 (442)
Q Consensus       433 ~~gp~i~G  440 (442)
                      .+++.++|
T Consensus       353 ~~~~~~~G  360 (402)
T PRK11902        353 VYVGPTSG  360 (402)
T ss_pred             HHHHHHHH
Confidence            44444444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=2.4e-27  Score=230.81  Aligned_cols=311  Identities=16%  Similarity=0.143  Sum_probs=228.0

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      ...+..+...+..+...+.++.+.++|+++..+      .|++.+.+.+++.++.++.|+++||+|||+.+.++.+++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            344456666667788888999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc---------------------------------------------------hHHHHHHHHHHHHhhcchhh
Q 013453          125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG  153 (442)
Q Consensus       125 ~~~~~~~a~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~  153 (442)
                      +++++++.+                                                   .+..++++|+++|+|.+...
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            999987752                                                   25567899999999999988


Q ss_pred             H-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCC---------cccccccccCCcChhHHHHHH
Q 013453          154 P-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN---------LFSSESLFGKFPYFLPCLCIS  223 (442)
Q Consensus       154 ~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~---------~~gw~~~~~~~~~~~~~~~~~  223 (442)
                      + ..+++.|++|+++|++.+++++.+..+|.++|+++++++.+...+|..         -..||  | ..+||..|++.+
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr--W-iGaWwl~Fli~g  267 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR--W-IGAWWIGFLICG  267 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc--H-HHHHHHHHHHHH
Confidence            8 599999999999999999999999999999999999999863221110         00111  1 235888888888


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhh-h---hhhcccccccccccccchhHHHHHHHHHHHHHHh
Q 013453          224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV-K---EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  299 (442)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (442)
                      ++.++..+.++++|++.+....+.+.+....++.++..++. .   +..++.....+++++||.++...+..++......
T Consensus       268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~  347 (633)
T TIGR00805       268 GVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFN  347 (633)
T ss_pred             HHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            88777766666777654322111100000000000000000 0   0011122346678999999999999999888888


Q ss_pred             hHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHH-HHHHHHhhHHHHHHHhhc--hhHHHHHHHHHHHHHHHH
Q 013453          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS  370 (442)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  370 (442)
                      ++..+.|.|+...     +|+++.+++.+.....+ +.+++.+ +++++.||++  .++.+..+..+..+..+.
T Consensus       348 ~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~~-l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       348 GYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGYL-IGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHHh-hhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            8989999888743     78999999999887776 4456665 6777777766  456666666665555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.95  E-value=2.4e-25  Score=211.16  Aligned_cols=376  Identities=15%  Similarity=0.067  Sum_probs=235.9

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhH
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~  116 (442)
                      +++.++.++...+...++++...+.++.+ .+++|.+..+      .+++.+.+.....+..+++|+++|| +||||+++
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~   85 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV   85 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH
Confidence            34567777777777777777777666544 6779999988      9999999998888999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHhccchHHH-HHHHHHHHHhhcchhhH-HHHHhhhhcccc--chhhhhhhhhHhhhhHHHHHHHhhhh
Q 013453          117 MGTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGF  192 (442)
Q Consensus       117 ~~~~~~~i~~~~~~~a~~~~~-l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (442)
                      ++.+++.++.++++++++... ++++|+++|+|.|...| ..+++.|.+|++  +|++++++++.+.++|..+||.++++
T Consensus        86 ~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~  165 (489)
T PRK10207         86 LGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPV  165 (489)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876554 55899999999999888 599999999877  45789999999999999999999999


Q ss_pred             hccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCC--CCCccch---hhh------------h
Q 013453          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCD---VSY------------D  255 (442)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~---~~~------------~  255 (442)
                      +.+       +.|||         ..|.+.++..++.++.+...++..++.+  .+++..+   ...            .
T Consensus       166 l~~-------~~gw~---------~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~  229 (489)
T PRK10207        166 IAD-------KFGYS---------VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCA  229 (489)
T ss_pred             HHH-------hhChH---------HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence            998       44544         4445544433333333333333221111  1010001   000            0


Q ss_pred             hhhhhhhhhhhh------------hcccccccccccccchhHHHHHH--HHHHHHHHhhHHHHHHHHhcCCcccCcccCC
Q 013453          256 ALESASAEVKEE------------EGREATPKKSLLKNWPLMSSIIV--YCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (442)
Q Consensus       256 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (442)
                      ...+.. .....            -........+.+|+|.+....+.  ..++...+......++.+.......+..|+.
T Consensus       230 ~~~~~~-~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~  308 (489)
T PRK10207        230 WLMHNV-EVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFS  308 (489)
T ss_pred             HHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceE
Confidence            000000 00000            00000011245566655433322  3333333444445566665532222222333


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhH-------HHHHHHHHHHHHHHHHHHHH----HhhchhhHHHHHHHH
Q 013453          322 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-------VARIAGVLTIPLLTSYPYIA----MLSGFGLAFLLNCAS  390 (442)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  390 (442)
                      .. ...+...+.+..++..++. .++.+|.++|+       .+.+++++..++++.+....    .........+.+...
T Consensus       309 i~-~~~~~~~n~~~iii~~pl~-~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~  386 (489)
T PRK10207        309 IN-PVSFQALNPFWVVVASPIL-AGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVY  386 (489)
T ss_pred             EC-HHHHHhHhHHHHHHHHHHH-HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHH
Confidence            21 2333344445555556634 45666666664       35566666666654332111    111111222244455


Q ss_pred             HHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          391 VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      ++.+.+.....+.....+.+..|++.+|.++|+.+...++|+.+|..++
T Consensus       387 ~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        387 LFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677778888888888999999999999999999999998887654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=1e-25  Score=210.61  Aligned_cols=353  Identities=13%  Similarity=0.126  Sum_probs=231.6

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      .++.+....++...+.....|.+|.+. +++|.+..+      .|++.+.+.++..++++++|+++||+|||+.++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~   76 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS   76 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            355666677777778888889988765 568999999      9999999999999999999999999999999988776


Q ss_pred             HHHHHHHHH---hccc-----hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhh
Q 013453          121 SVVIFNTLF---GLSV-----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (442)
Q Consensus       121 ~~~i~~~~~---~~a~-----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (442)
                      ...++....   .+.+     ....+++.|++.|++.+...+ ...+..|..  +++++.++......++|.++||.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882        77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh
Confidence            665544322   2222     234456778888988777777 466766643  33456778888888999999999999


Q ss_pred             hhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhh-ccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcc
Q 013453          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (442)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (442)
                      .+.+                 .+|+.++.+.+++.++..+..+. .||+++++. +++..+             ++++++
T Consensus       155 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~  203 (396)
T TIGR00882       155 ILFS-----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VANALG-------------ANASAF  203 (396)
T ss_pred             hhhc-----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hhcccc-------------cccCCC
Confidence            8764                 24555667777666665544444 333322111 000000             000111


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 013453          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (442)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (442)
                      +.++.++++|||+++...+..+...........+++.|+.....  +.+.+....|...+...+...++.. ..+++.||
T Consensus       204 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~g~~~~~~~i~~~~~~~-~~g~l~~r  280 (396)
T TIGR00882       204 SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQGTRVFGYVTTMGELLNALIMF-CAPLIINR  280 (396)
T ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            12345678899988776666555554444555566666654321  2355667788888888888888877 66677788


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHH-HHHHHH
Q 013453          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMS  429 (442)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~  429 (442)
                      .++|+...++..+.++...+.....     ..+.. .....+.+............+..+..|++.++++.+. .+....
T Consensus       281 ~g~~~~l~~~~~l~~l~~~~~~~~~-----~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~  354 (396)
T TIGR00882       281 IGAKNALLIAGTIMSVRIIGSSFAT-----TALEV-VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQ  354 (396)
T ss_pred             hccchhHHHHHHHHHHHHHHHHhcC-----ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHH
Confidence            8999988877776666555433321     12221 2222322222222223344456666788888887776 678889


Q ss_pred             HHHhhhcccCCCC
Q 013453          430 LFKAAGPAGGGAL  442 (442)
Q Consensus       430 ~g~~~gp~i~G~l  442 (442)
                      +|++++|.+.|++
T Consensus       355 lg~~~~~~l~G~l  367 (396)
T TIGR00882       355 LAMIFLSTLAGNM  367 (396)
T ss_pred             HHHHHHHHhHHHH
Confidence            9999999988863

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=5.6e-26  Score=194.07  Aligned_cols=369  Identities=16%  Similarity=0.103  Sum_probs=252.1

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +.........+..+.+-......+.|...+..+.+..+      ..++....+.+..+++..||..+|++|||+.+.+..
T Consensus        77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            34444555566666666566667778888899988888      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      ...++...+.+.++|+..+.+.|.+.|+|.|. .| ..++-.|..|..+|...+-.. +.+.+|.++...++..+..   
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~---  225 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---  225 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH---
Confidence            99999999999999999999999999999888 55 588889999999999887777 9999999999999999888   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhh--hhhhhhh-------------hh
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESAS-------------AE  263 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~-------------~~  263 (442)
                          .+|||+.+         .....+..+.....+++||+|+....+.++.++..  +++++.+             ++
T Consensus       226 ----~~gwr~~l---------~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~  292 (528)
T KOG0253|consen  226 ----NFGWRYLL---------FTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAID  292 (528)
T ss_pred             ----hhhHHHHH---------HHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhh
Confidence                66766655         66666666667778899999988654443333221  1111110             00


Q ss_pred             hhh------------hhcccccccccccccchhHHHHHHHHHHHHHHhhHHH---HHHHHhcCCccc----Ccc------
Q 013453          264 VKE------------EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE---IFSLWANSPKKL----GGL------  318 (442)
Q Consensus       264 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~------  318 (442)
                      .++            ..++......+++..+--+..++....++...+.+..   ....+.+.-...    ..+      
T Consensus       293 ~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~  372 (528)
T KOG0253|consen  293 RQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELET  372 (528)
T ss_pred             hhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHh
Confidence            000            1122233344444433223333333333332222221   111222211000    000      


Q ss_pred             ----cCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 013453          319 ----NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  394 (442)
Q Consensus       319 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (442)
                          ..+..+--.-.....+..+.|.+ +..++.+|+|||+.+..++++.+++.+++.......  ....+.    +..-
T Consensus       373 ~~~c~~s~~~dYrdllitslaefPGlL-It~~iverlGRKkTMal~l~~f~iflfll~~c~~rn--~~tvll----f~ar  445 (528)
T KOG0253|consen  373 RANCPLSVAKDYRDLLITSLAEFPGLL-ITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN--AYTVLL----FTAR  445 (528)
T ss_pred             hhcCCccchhHHHHHHHHHHhhCCchh-HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc--hhHHHH----HHHH
Confidence                01111111122334667777766 777888889999999999999888877766554322  111112    2222


Q ss_pred             HHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          395 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      ++..+.+.+.+.+..|++|+..|+++.|.+.....+|+++.|.++
T Consensus       446 afisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  446 AFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             HHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence            345566778899999999999999999999999999999999764

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.95  E-value=5.6e-26  Score=213.98  Aligned_cols=355  Identities=13%  Similarity=0.100  Sum_probs=222.8

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      ++.+.+....++..+..+...+.+|.+.++ +|.+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            345666667777777777888888877655 9999999      999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHh---ccc-----hHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh
Q 013453          120 ASVVIFNTLFG---LSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       120 ~~~~i~~~~~~---~a~-----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                      .+..++.....   .++     .....++++++.|.+.....+. ..+. +.. .+++++.++......++|..++|.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHH
Confidence            66555433221   111     1111222333333332232332 3333 222 34677888999999999999999999


Q ss_pred             hhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcc
Q 013453          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (442)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (442)
                      +.+.+                 .+|+.++.+.++..++..+..++.+++++++.+.+++.++             ++++.
T Consensus       162 g~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  211 (420)
T PRK09528        162 GILFN-----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-------------NASAV  211 (420)
T ss_pred             HHHHh-----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc-------------ccccc
Confidence            99875                 1344455666666655555444443332221110000000             00001


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 013453          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (442)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (442)
                      ..+..++.+|+|.++...+..+.............+.|..+..  .+.+.+..+.|.+.+...+...++.+ ..+++.||
T Consensus       212 ~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr  288 (420)
T PRK09528        212 SLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQGTRVFGYLNSFQVFLEALIMF-FAPFIINR  288 (420)
T ss_pred             cHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            1122345778888776555544444444444445666554321  12356777889999888888888877 77778888


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHH-HHHHHH
Q 013453          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMS  429 (442)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~  429 (442)
                      +++|+....+..+..+...++.+..     ..+. ......+.+.......+....+.++..|++.+++..++ .++...
T Consensus       289 ~g~~~~~~~~~~l~~~~~~l~~~~~-----~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  362 (420)
T PRK09528        289 IGAKNALLLAGTIMAVRIIGSGFAT-----GPLE-VSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQ  362 (420)
T ss_pred             hCcchhhHHHHHHHHHHHHHHHhcc-----cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHH
Confidence            8999988877777776666554432     1222 22222323333333344556677888899999988766 677788


Q ss_pred             HHHhhhcccCCCC
Q 013453          430 LFKAAGPAGGGAL  442 (442)
Q Consensus       430 ~g~~~gp~i~G~l  442 (442)
                      +|.+++|.+.|++
T Consensus       363 lg~~ig~~~~G~l  375 (420)
T PRK09528        363 LGAVFLSTLAGNL  375 (420)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=1e-24  Score=205.06  Aligned_cols=354  Identities=14%  Similarity=0.135  Sum_probs=227.9

Q ss_pred             hHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc
Q 013453           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (442)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a  132 (442)
                      ..+........++.+.+|+|-++.       ..|+.+.+.++..++.++.|+++|.||||.+++.+.++..++.++++.+
T Consensus        56 ~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   56 AYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            344445556777899999988754       6899999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccC
Q 013453          133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (442)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~  212 (442)
                      +|...++++-.+.|+|.|........++|..|.|.|....++.....-.....+|.++..+..       ..+|||.|  
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-------~~~WRw~~--  199 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-------HSGWRWIF--  199 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-------CCCcchHH--
Confidence            999999999999999988877667779999999999888777766655555667777776665       34555444  


Q ss_pred             CcChhHHHHHHHHHHHHHHH--HhhccccCCCCCCCCccchhhhhhhhh-------------------------hhhhhh
Q 013453          213 FPYFLPCLCISLFAFGVTIA--AFWLPETLHRHNDDDDSCDVSYDALES-------------------------ASAEVK  265 (442)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~  265 (442)
                             ++..+...+.++.  +++.|.+++..+.++...++...+++-                         .+++.+
T Consensus       200 -------~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~  272 (599)
T PF06609_consen  200 -------YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAH  272 (599)
T ss_pred             -------HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Confidence                   4444444443322  223333322211111111111111110                         000000


Q ss_pred             ------------------hh--hcccccccccccccc-hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCCh--
Q 013453          266 ------------------EE--EGREATPKKSLLKNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST--  322 (442)
Q Consensus       266 ------------------~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  322 (442)
                                        |.  ..+++....+++|++ .+...++..++....+++...++|......     ++-++  
T Consensus       273 VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~~~  347 (599)
T PF06609_consen  273 VIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGSDPIS  347 (599)
T ss_pred             chhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCcc
Confidence                              11  123455667788874 465556666666666666666776655433     22232  


Q ss_pred             -hHHHHHHHHHHHHHHHHHhhHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 013453          323 -QMVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSI  400 (442)
Q Consensus       323 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (442)
                       ...++.....+.+..++..+.+. +.++.++ |+.+..+.++..+++.++..... ++...++.+   .++.+.+....
T Consensus       348 ~~~~~~~s~~~~fg~~~g~~i~g~-l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~-~n~~~~i~~---~~l~g~giG~~  422 (599)
T PF06609_consen  348 ITEIGWISSPVGFGSCAGAVILGL-LFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP-DNKNAAIAF---LVLAGFGIGGI  422 (599)
T ss_pred             cceeehhhhhHHHHHHHHHHHHHH-HHHHccchhHHHHHHHHHHHHHHHHHHHccC-CCcchHHHH---HHHHHHhHHHH
Confidence             24667777777777777764444 4444444 44555665555555555443322 222222211   12222223333


Q ss_pred             HHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          401 ITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       401 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      ........+-..|+++.|++.|+..+++.+|+.+|..+.
T Consensus       423 ~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  423 LVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344455666678999999999999999999999987654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.7e-25  Score=195.05  Aligned_cols=360  Identities=16%  Similarity=0.166  Sum_probs=272.4

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +..+..+....++.++......+.+|.+.+.++++..|      .+++..+++.++.+.+++.|++.+|+|+|+.++.++
T Consensus        12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL   85 (422)
T COG0738          12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGL   85 (422)
T ss_pred             eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHH
Confidence            34456667777888888888999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh---ccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       120 ~~~~i~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .++++++.++.   ...++..++++-++.|.|.+...+ ++.+++...++++-.+.+++.+..+++|..++|++++.+..
T Consensus        86 ~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          86 LLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99999999885   456899999999999999999988 59999999999999999999999999999999999999986


Q ss_pred             ccc----cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc--cccCCCCCCCCccchhhhhhhhhhhhhhhhhhc
Q 013453          196 PAE----KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (442)
Q Consensus       196 ~~~----~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (442)
                      +..    +-+....|+... -..++.++...+...++..+.....  |+.+....++.+                     
T Consensus       166 s~~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~---------------------  223 (422)
T COG0738         166 SGVALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA---------------------  223 (422)
T ss_pred             hhhhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc---------------------
Confidence            210    000011122211 2235666666665555444443332  222211111100                     


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013453          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (442)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (442)
                      +......+++++|.++...+..+++........++++.|...+     .|.+..+++...+....+.++|++ ++.++-+
T Consensus       224 ~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGRF-ig~~lm~  297 (422)
T COG0738         224 SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGRF-IGSALMS  297 (422)
T ss_pred             cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            0111456789999999999999999999999999999998764     588999999999999999999998 5555556


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHH
Q 013453          350 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  429 (442)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  429 (442)
                      |+...+.+........+.++...+...       .+........+.+....+|..++...+..| ++...+ |.......
T Consensus       298 ~~~~~k~Laf~a~~~ill~~~~~l~~g-------~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~-s~~l~mai  368 (422)
T COG0738         298 RIKPEKYLAFYALIAILLLLAVALIGG-------VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVG-SGLLVMAI  368 (422)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccc-ceeeeehe
Confidence            888888887777666666666555432       112223334455677888999999999898 444444 44455677


Q ss_pred             HHHhhhcccCCCC
Q 013453          430 LFKAAGPAGGGAL  442 (442)
Q Consensus       430 ~g~~~gp~i~G~l  442 (442)
                      +|+++-|.+.|++
T Consensus       369 vGGAiiP~l~G~i  381 (422)
T COG0738         369 VGGAIIPPLQGVI  381 (422)
T ss_pred             ecchHHHHHHHHH
Confidence            8889999887753

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.6e-28  Score=213.76  Aligned_cols=391  Identities=14%  Similarity=0.054  Sum_probs=247.4

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHh-ccccc-chhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      +.+..++.+.+..+..+++.+.|.+...+ |.++. .+..+-..+.+..+..+|..+||+++|+++||+|||+++...++
T Consensus        43 i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~li  122 (538)
T KOG0252|consen   43 IIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELI  122 (538)
T ss_pred             HHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHH
Confidence            33455678889999999999998887655 33311 11223338899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc-------hHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhh
Q 013453          121 SVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (442)
Q Consensus       121 ~~~i~~~~~~~a~-------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (442)
                      ++.++++++++..       -.+++...|++.|+|.|.-+|. .+..+|...++.||..++..-+..+.|...|.+++-.
T Consensus       123 ImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I  202 (538)
T KOG0252|consen  123 IMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI  202 (538)
T ss_pred             HHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence            9999999887742       3578999999999999999995 8888999999999999999998999888888888777


Q ss_pred             hccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccc----hhhhhhhhhhhhhhh--h
Q 013453          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC----DVSYDALESASAEVK--E  266 (442)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~  266 (442)
                      +....+.--+..+-..-. ..-||+.+.+..++++..+...+.+||+++.....++..    ++..+.+....++++  +
T Consensus       203 v~~~fe~~~~~~~~~~~l-d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~  281 (538)
T KOG0252|consen  203 VSAIFEKIFNGPSTYPHL-DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAE  281 (538)
T ss_pred             HHHHHhccCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccc
Confidence            665433211111111111 446899888888888888888888999987652111110    000001110000000  0


Q ss_pred             hhcccccc----cccccccchhHHH---HHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHH--------HHHH
Q 013453          267 EEGREATP----KKSLLKNWPLMSS---IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE--------VLAI  331 (442)
Q Consensus       267 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  331 (442)
                      ...+.+..    +...+..+....+   ....++.-..++...-+...      ..++.++.+.....        ...+
T Consensus       282 ~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~------I~~~ig~~~~~~~~~~~~~vA~~~~i  355 (538)
T KOG0252|consen  282 SDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSV------IFSAIGVIPSANTYHELFKVAEGNLI  355 (538)
T ss_pred             cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHH------HHHhhccCCCcchHHHHHHHHHHHHH
Confidence            01111111    2222222222222   22233322222222222211      22223443333222        2222


Q ss_pred             HHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 013453          332 TGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA  411 (442)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (442)
                      ...+..+-...+...+.|++||++....++.+..+..+.+...-+... ...-..++..+...+..++.........+|.
T Consensus       356 ia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~  434 (538)
T KOG0252|consen  356 IAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIGFVVLYSLTFFFGNFGPNATTFIVPAEI  434 (538)
T ss_pred             HHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCceeehHHHHHHHHhcCCCceeEEeehhh
Confidence            222222212224455678889999999999998888777665332111 1122233333444455566666778889999


Q ss_pred             CChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          412 VDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       412 ~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +|.+.|+++.|+....+..|+++|....++
T Consensus       435 FParvR~t~hGIsAA~GK~GAivg~~~F~~  464 (538)
T KOG0252|consen  435 FPARVRSTCHGISAASGKAGAIVGAFGFLY  464 (538)
T ss_pred             chHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence            999999999999999999999998776543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.6e-24  Score=200.69  Aligned_cols=363  Identities=17%  Similarity=0.157  Sum_probs=256.2

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (442)
                      +..++......-....+....+.++++++.+..+      ++|+.++......+.+|+.+.+.||+|.|++.+.|.++..
T Consensus        49 ~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   49 FASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA  122 (509)
T ss_pred             HhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence            3333444444434455557779999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHH-HHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCC
Q 013453          124 IFNTLFGLSVNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (442)
Q Consensus       124 i~~~~~~~a~~~~~l~~~r-~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (442)
                      ++.++.++++++|++++.. ++.|+|.|+... +...+..+|+ |+|+.+.|+...+.++|.++-|.+..++.+      
T Consensus       123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~------  195 (509)
T KOG2504|consen  123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS------  195 (509)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH------
Confidence            9999999999999988866 888999888665 6777776554 789999999999999999999999999998      


Q ss_pred             CcccccccccCCcChhHHHHHHHHHHHHHHHHhhccc-cCCCCCC----------------------CCccchhhhh---
Q 013453          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHND----------------------DDDSCDVSYD---  255 (442)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~----------------------~~~~~~~~~~---  255 (442)
                                ..+||....+.+.+.+-.++....+++ +++..+.                      ...+.+...+   
T Consensus       196 ----------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (509)
T KOG2504|consen  196 ----------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSL  265 (509)
T ss_pred             ----------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccc
Confidence                      555555556666666555444333333 2221000                      0000000000   


Q ss_pred             -hhhhhhh-hhhhhhccccc-c---cccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHH
Q 013453          256 -ALESASA-EVKEEEGREAT-P---KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVL  329 (442)
Q Consensus       256 -~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (442)
                       ..+...+ +++.+....+. .   ..++++++.++...+...+..........+++.+..      ..+++..+++.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~------~~g~~~~~aa~l~  339 (509)
T KOG2504|consen  266 SNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK------SLGLSSNDAAFLL  339 (509)
T ss_pred             cchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCChhhhHHHH
Confidence             0000000 00000001111 1   257899999988888888877777766666666654      3689999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013453          330 AITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIL  407 (442)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (442)
                      ++.++..+++++ +.+++.|+..  ++....++.+..++.....+....     . ..+.....+.++............
T Consensus       340 Siigi~~i~gRi-~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~-----~-~~l~~~~~~fG~~~g~~~~l~~~i  412 (509)
T KOG2504|consen  340 SIIGVSDIIGRI-ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT-----Y-VGLIVFSILFGFCVGSFSSLTPVI  412 (509)
T ss_pred             HHHHHhhhhhhh-hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 6667776644  444555555555555544444321     1 223344444444444555555678


Q ss_pred             hcccCChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          408 QNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       408 ~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                      +.+.++.++-..+.|+...++.++..+||+++|++
T Consensus       413 ~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~  447 (509)
T KOG2504|consen  413 LVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL  447 (509)
T ss_pred             HHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence            88999999999999999999999999999999864

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.94  E-value=1.1e-23  Score=196.47  Aligned_cols=348  Identities=13%  Similarity=0.048  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHH--HHHHHHHHHhhhhhhhh-hhcccCCchhhHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFWGL-VADRYGRKPVIIMGT  119 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~s~~~~~~~~~~~~~G~-l~dr~Grr~~~~~~~  119 (442)
                      +..+....+.+++..+...|.+|.+.+|.|.+.++      +|++  .+...+...+.+|+++. ..||+||||..++..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            45566778888999999999999999999999999      9997  46678888888888854 799999999976655


Q ss_pred             HHH-HHHHHHHh---ccch-HHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       120 ~~~-~i~~~~~~---~a~~-~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      .+. .+.....+   ...+ ..+++..-++.++..+...+ ..++..|..++++++...+....+..+|.++|+.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 22222222   2222 33444444555566666666 477888888888888888888888899999999988898


Q ss_pred             ccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccc
Q 013453          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (442)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (442)
                      .+                ..+|+.++.+.+++.++..+..++++|+++++++++   +.                  ...
T Consensus       157 ~~----------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~---~~------------------~~~  199 (390)
T TIGR02718       157 FG----------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP---LA------------------RRA  199 (390)
T ss_pred             HH----------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc---hh------------------hHH
Confidence            88                455666668777777665555555554332111100   00                  012


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHH-HHHhhHHHHHHHhhc
Q 013453          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL-VFQLSLYPFLERILG  352 (442)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  352 (442)
                      +.++++|+|.++......++..........+.+.|+.+      .|+++++.|......+.... ++.. ..+++.||++
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~-~~g~l~~r~g  272 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCG-GGAWLVRRAG  272 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHhh
Confidence            34567888888877777777666666666666655532      59999999999888776444 4455 7888888889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCh-hhhhHHHHHHHHHHHH
Q 013453          353 PIMVARIAGVLTIPLLTSYPYIAMLS-GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ-DQRGAANGIAMTGMSL  430 (442)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~  430 (442)
                      +++....+..+..+............ ...... ......+.++......+.......+..++ +.+++.+++.+...++
T Consensus       273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l  351 (390)
T TIGR02718       273 LWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV-AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDL  351 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            99888776655533322222111110 111111 11111222222233334445554455555 8899999999999999


Q ss_pred             HHhhhcccCCC
Q 013453          431 FKAAGPAGGGA  441 (442)
Q Consensus       431 g~~~gp~i~G~  441 (442)
                      |..+||.++|+
T Consensus       352 g~~~g~~~~G~  362 (390)
T TIGR02718       352 GELIASSIAGY  362 (390)
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.93  E-value=2.1e-24  Score=204.85  Aligned_cols=339  Identities=16%  Similarity=0.116  Sum_probs=228.3

Q ss_pred             hhhchh-HHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCch-hhHHHHHHHHHHHHHHhc
Q 013453           58 SSLFPF-LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNTLFGL  131 (442)
Q Consensus        58 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~  131 (442)
                      ....+. .+.+.+++|+++.+      .|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++..
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~   89 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT   89 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence            334443 45667789999999      9999999999999999999999997    67755 566788888888887776


Q ss_pred             cch------HHHHHHHHHHHHhhcchhhH-HHHHhhhhc-cccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCc
Q 013453          132 SVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (442)
Q Consensus       132 a~~------~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (442)
                      .++      ...+++.+++.+++.+...+ ..++..|.. +++||++..++.+.+..+|..+++.+.+.+....++..  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~--  167 (437)
T TIGR00792        90 TPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGD--  167 (437)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--
Confidence            653      45677788888888777655 588888887 56899999999999999998888777766654211000  


Q ss_pred             ccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccc
Q 013453          204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (442)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (442)
                             ...+|+..+.+.+++.++..+ ..+..||+++..++++++                  +.+.....+++++||
T Consensus       168 -------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~l~~~~  222 (437)
T TIGR00792       168 -------DKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------KLSLKQIFKALFKND  222 (437)
T ss_pred             -------ccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------CCCHHHHHHHHhCCH
Confidence                   034577766777776665543 445667654221110000                  000112345678899


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHH
Q 013453          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (442)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (442)
                      .++...+..++..........+.+.|..     ..++ ++.+.+.+.....++.+++.+ +..++.||+++|+....+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~g~~~~~~~~~~  295 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFT-----YVLG-DPELFSYMGSIAIVAGLIGVL-LFPRLVKKFGRKILFAGGIL  295 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEe-----eecC-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHH
Confidence            9888777776666555544333332222     1133 455667777777888888877 66778888899998888877


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC-------hhhhhHHHHHHHHHHHHHHhhh
Q 013453          363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAG  435 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g  435 (442)
                      +..++...+.+..  .  ..+. ..+...+.++......+..+++.+|..|       ++.+|++.|+.++...+|..++
T Consensus       296 ~~~~~~~~~~~~~--~--~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg  370 (437)
T TIGR00792       296 LMVLGYLIFFFAG--S--NLPL-ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA  370 (437)
T ss_pred             HHHHHHHHHHHcc--h--hHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            7766655544422  1  1122 2222233333444455667777777654       5678999999999999999999


Q ss_pred             cccCCC
Q 013453          436 PAGGGA  441 (442)
Q Consensus       436 p~i~G~  441 (442)
                      +.+.|+
T Consensus       371 ~~i~g~  376 (437)
T TIGR00792       371 GFLVGL  376 (437)
T ss_pred             HHHHHH
Confidence            988775

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=5.4e-24  Score=205.90  Aligned_cols=334  Identities=16%  Similarity=0.133  Sum_probs=228.3

Q ss_pred             HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Q 013453           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS  147 (442)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~  147 (442)
                      .+.++.+...      ..+..+++.+|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|+
T Consensus       110 ~~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  110 WNLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             hceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            3455666666      8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHH
Q 013453          148 LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  226 (442)
Q Consensus       148 ~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  226 (442)
                      +.+.... ...+++|++++++|+.+..+ ......+..++++.++++..                  +||+.+++..++.
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWIISIPS  244 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHH
Confidence            8666655 69999999999999999999 77777888888888888864                  3566667777777


Q ss_pred             HHHHHHHhhccccCCCCCCCCccchh--hhhhhhhh----hhh---h----h-h--h--hcccccccccccccchhHHHH
Q 013453          227 FGVTIAAFWLPETLHRHNDDDDSCDV--SYDALESA----SAE---V----K-E--E--EGREATPKKSLLKNWPLMSSI  288 (442)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~----~~~---~----~-~--~--~~~~~~~~~~~~~~~~~~~~~  288 (442)
                      ++.++.++..||+|++...+.+.++.  ..++..+.    .+.   .    . +  .  ..++...+.++++.|++....
T Consensus       245 ~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~  324 (521)
T KOG0255|consen  245 GLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRT  324 (521)
T ss_pred             HHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHH
Confidence            77766666677999986554433222  11221110    000   0    0 0  0  111224467778887654444


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHH
Q 013453          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (442)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (442)
                      +...+..+....      .|+.......++|.+..   ......+........ ......++.|||.....+..+..+++
T Consensus       325 ~~~~~~~~~~~~------~y~gl~~~~~~lg~~~~---~~~~~~~~~~~p~~~-~~~~~~~~~gR~~~~~~~~~~~~~~~  394 (521)
T KOG0255|consen  325 LYLLFIWFVFSL------VYYGLSLNVSGLGGNIY---LNFTLSGLVELPAYF-RNGLLLPEFGRRPPLFLSLFLAGIGL  394 (521)
T ss_pred             HHHHHHHHHHhH------HHHhhhhhhhhcCchHH---HHHHHHHHHHhhHHH-HHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            333333211111      11111111122333322   233333334444444 44566677799999999999999998


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          369 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      +...+.......  +....+..+...+.. ......+.+.+|.+|+..|..+.+...+...+|++++|.+.
T Consensus       395 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~  462 (521)
T KOG0255|consen  395 LLFGWLPDDLGG--WLHWILPLLGKFFIG-SAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFP  462 (521)
T ss_pred             HHHHHhhccchh--HHHHHHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877654321  122222222222233 33344588899999999999999999999999999998753

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.93  E-value=9.3e-23  Score=175.24  Aligned_cols=328  Identities=16%  Similarity=0.081  Sum_probs=253.6

Q ss_pred             cchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH
Q 013453           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (442)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~  135 (442)
                      ....+.|.++.+.+|+|.+.+.      .|++++...+...+.+++..+++.|+|.++.+..++++..++.++-... +.
T Consensus        27 ~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~   99 (395)
T COG2807          27 AITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GL   99 (395)
T ss_pred             hhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cH
Confidence            3467789999999999999999      9999999999999999999999999999999999999999999998887 78


Q ss_pred             HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCc
Q 013453          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (442)
                      +.++.+-.+.|.|.+...+ .++++.+.+|+ +-+..++++.+..++|..+++.+.-.+.++      ..|||       
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~------~~gW~-------  165 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQH------SGGWR-------  165 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHh------hccHH-------
Confidence            8899999999999999998 59999999984 688999999999999999999999999872      12344       


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHH
Q 013453          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (442)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (442)
                        .....-+.++++.++.++  |...+....+.+                     ....+..+++|+|.-|...+.+.+.
T Consensus       166 --~aL~~WAl~allAl~~Wl--Pq~~r~~~~~~~---------------------~~~~~~~~vw~~~~aW~vtLfmGlq  220 (395)
T COG2807         166 --GALGFWALLALLALLIWL--PQALREQAASIA---------------------TKLVSVRKVWRSPLAWQVTLFMGLQ  220 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHh--hhcccccccccc---------------------cccccccccccCchhHHHHHHHHhh
Confidence              433555666665555443  442221111100                     0122345689999999999999999


Q ss_pred             HHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 013453          295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  374 (442)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (442)
                      +..++....++|.++.+      .|+|+.++|.+.+...+..+..++..-....|+.++|+..........++...+.+.
T Consensus       221 S~~~Y~~~~WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~  294 (395)
T COG2807         221 SLLYYIVIGWLPAILID------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA  294 (395)
T ss_pred             HHHHHHHHHHHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988875      499999999999999999999999444444445667777777777777776666654


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHhhhh-hhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCCC
Q 013453          375 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFI-LQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  442 (442)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~l  442 (442)
                      +..   ..+.+.    +..+....+.++.... +..+..+++..++-.|+.+.++++-.+.||.+.|++
T Consensus       295 P~~---~~~lw~----~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         295 PGQ---LPILWA----LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             hhh---HHHHHH----HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            432   222222    2222333444455444 344455678889999999999999999999999874

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.93  E-value=7.9e-30  Score=242.80  Aligned_cols=375  Identities=18%  Similarity=0.209  Sum_probs=243.4

Q ss_pred             HHHHHhHhcchhhchhHHHHH--HHhcccccchh---hhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           48 IIVLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      ++.+..+++...+....+...  .++..+..+..   .....+++.+...+|..+|+++.|.++||+|||+.++++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344666666666655554444  23333332211   2344789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccc---hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          123 VIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       123 ~i~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      .++.++.++++   +++.+.++|++.|++.|...+ ...++.|..|+++|++..++.+.+..+|..++..++..+.+.  
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~--  164 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY--  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            99999999999   999999999999999988877 599999999999999999999999999999988887665431  


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhh--hhhhhhhhh---hhhh------h
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESASA---EVKE------E  267 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~------~  267 (442)
                           .+      .+.||..+.+..+++++..+...++||+|++...+++.++..  .++.++...   +.++      +
T Consensus       165 -----~~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~  233 (451)
T PF00083_consen  165 -----SD------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE  233 (451)
T ss_pred             -----cc------cccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence                 11      234565557777777777777788999999865444333221  122111111   0000      0


Q ss_pred             hcccccccccccccchh-HHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHH
Q 013453          268 EGREATPKKSLLKNWPL-MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (442)
Q Consensus       268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (442)
                      .++.+..++++++++.. +...+...+..............|  .+...++.+.+..  -.......+...++.+ .+.+
T Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~--~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~  308 (451)
T PF00083_consen  234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYY--SPSIFENAGISNS--FLATLILGLVNFLGTL-LAIF  308 (451)
T ss_pred             ccccceeeeecccccccccccccccccccccccccccccccc--ccccccccccccc--cccccccccccccccc-cccc
Confidence            11111446777777542 222222222222211111111111  2223344555555  1222233444555554 5557


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHHHH--HHHHhhch--hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHH
Q 013453          347 LERILGPIMVARIAGVLTIPLLTSYP--YIAMLSGF--GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANG  422 (442)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  422 (442)
                      +.||+|||+....+.....++...+.  ........  ..........+....+..+..+..+.+..|.+|++.|+++.|
T Consensus       309 ~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~  388 (451)
T PF00083_consen  309 LIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIG  388 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccc
Confidence            88889999998888877777766554  11111110  122222222222333444667778889999999999999999


Q ss_pred             HHHHHHHHHHhhhcccCC
Q 013453          423 IAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       423 ~~~~~~~~g~~~gp~i~G  440 (442)
                      +....++++++++|.+..
T Consensus       389 ~~~~~~~i~~~i~~~~~~  406 (451)
T PF00083_consen  389 LSYAVGRIGGFIIPFLFP  406 (451)
T ss_pred             cccccccccccccccccc
Confidence            999999999998887654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=1.4e-22  Score=183.15  Aligned_cols=177  Identities=12%  Similarity=0.101  Sum_probs=146.2

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .+|+-.|+..+ +.......|.+.+++|+++++.     .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++
T Consensus        31 ~lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        31 YLCFYGFMAQF-RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC  104 (511)
T ss_pred             HHHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34444444333 4555567789999999998762     69999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcc
Q 013453          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (442)
Q Consensus       125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (442)
                      .+++.++++++..+.+.|++.|++.|...+...++..|+|+++|+++.++..++..+|.++++++++++ .       .+
T Consensus       105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~-------s~  176 (511)
T TIGR00806       105 VWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-V-------TL  176 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------hc
Confidence            999999999999999999999999998885599999999999999999999999999999999999994 3       45


Q ss_pred             cccccccCCcChhHHHHHHHHHHHHHHHHhhccccCC
Q 013453          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (442)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (442)
                      |||+.      +...++......++++..+++|..++
T Consensus       177 gWr~y------~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       177 GWISY------STLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             CchhH------HHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            66643      33344444444555666677885443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.92  E-value=7.5e-22  Score=188.45  Aligned_cols=372  Identities=13%  Similarity=0.054  Sum_probs=221.1

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~  118 (442)
                      +.++.++...+...+..+...+.++.+ .+++|.++.+      .+++.+.+........+++|+++|| +|||++++++
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            446667777777777777777777655 4889999988      8888888776666667899999999 5999999999


Q ss_pred             HHHHHHHHHHHhccc-hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccc--hhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                      .++..++..++++++ +.+.++++|+++|++.|...+ ..+++.|++|+++  |..++++++.+.++|..+||.+++++.
T Consensus        95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998874 566777889999999998877 5889999998653  456889999999999999999999998


Q ss_pred             cccccCCCcccccccccCCcChhHHHHHHHHHHHHHH----HHhhccccCCCCCCC-Cccchhhh-----------hhhh
Q 013453          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI----AAFWLPETLHRHNDD-DDSCDVSY-----------DALE  258 (442)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~~~~-~~~~~~~~-----------~~~~  258 (442)
                      +       .+||         +..+.+.++..++..+    ....++|..+..+.+ .+..+...           ....
T Consensus       175 ~-------~~g~---------~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (500)
T PRK09584        175 A-------KYGW---------SVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWL  238 (500)
T ss_pred             H-------hhCH---------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence            8       4444         4444555543333222    223344432111111 11111000           0000


Q ss_pred             hhhhhhhh------------hhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcC----CcccCcccCCh
Q 013453          259 SASAEVKE------------EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS----PKKLGGLNYST  322 (442)
Q Consensus       259 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  322 (442)
                      ....+...            ..........+.-++ +.+..+... +....+.......+.++..    ....+..|+. 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-  315 (500)
T PRK09584        239 LHNQEIARMALGVVALGIVVIFGKEAFAMKGAARR-KMIVAFILM-LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-  315 (500)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH-HHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhccccccceE-
Confidence            00000000            000000001111122 222222111 2222222222222222111    0000011211 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhHH---HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHH
Q 013453          323 QMVGEVLAITGFSLLVFQLSLY---PFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG---FGLAFLLNCASVVKNLL  396 (442)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  396 (442)
                      ...+.+.+.+.+..++..++..   +++.+|.+..+.+.+++++.++++..+.......+   .....+.....++.+.+
T Consensus       316 i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~g  395 (500)
T PRK09584        316 VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIG  395 (500)
T ss_pred             ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH
Confidence            1244555566666666555332   33334445556777888888888777665543211   11122455556666777


Q ss_pred             HHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcc
Q 013453          397 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  437 (442)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~  437 (442)
                      .....|....++.+..|++.||+++|+......+|..++..
T Consensus       396 e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~  436 (500)
T PRK09584        396 ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY  436 (500)
T ss_pred             HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999987666666555533

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.90  E-value=6.4e-21  Score=175.31  Aligned_cols=350  Identities=17%  Similarity=0.236  Sum_probs=248.0

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC-CchhhHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVV  123 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~~~~~~~~~~  123 (442)
                      .+....++..+..+...|.++.+.++.|.|..|      +|.+.+...+...++++++|.++||.+ +||.+.+..++.+
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~   79 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSA   79 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence            355566777777888899999999999999999      999999999999999999999999986 5788878888887


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh-hhhccccccCC
Q 013453          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYP  201 (442)
Q Consensus       124 i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~-~~l~~~~~~~~  201 (442)
                      +........++++.+++.-++..+......| ..++..+...  ++++-.|-.....++|.+++.... +.+..      
T Consensus        80 ~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~------  151 (400)
T PF03825_consen   80 LALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGG------  151 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHh------
Confidence            7777777888999888888888877666666 4666666655  456677878888888888775542 33332      


Q ss_pred             CcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccccc
Q 013453          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (442)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (442)
                       ..++.      .....+.+.+...++.....+.+|+.|++++.+++.++                  ....+..+++|+
T Consensus       152 -~~~~~------~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~------------------~~~~~~~~llk~  206 (400)
T PF03825_consen  152 -YLGIS------GTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVKK------------------LLGLDALKLLKN  206 (400)
T ss_pred             -hhccc------cccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCccc------------------ccchHHHHHhcC
Confidence             11111      11122344444444444444567877633222211111                  112233578999


Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCccc-CChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (442)
                      |++...++..++.......+.++.+.|+.+      .| .+....+...++..++.++.-. ..+++-+|+|.++++.++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~------~gg~~~~~~g~~~~l~~~aEi~~f~-~~~~~~~r~g~~~ll~~a  279 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQE------LGGYSGSTIGILWALGVVAEIPFFF-FSGRFLKRFGIKWLLLLA  279 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHH
Confidence            999888888888888888888888877654      34 6777788888877777777766 777788888999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHH-HHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHH-HHHHHhhhccc
Q 013453          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCA-SVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAG  438 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~gp~i  438 (442)
                      .+..++=..++.+..++  .......... ....+............++.+..|++.|++++++++.. ..+|..+|..+
T Consensus       280 ~~~~~vR~~l~a~~~~~--~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i  357 (400)
T PF03825_consen  280 LVAYAVRWLLYAYFSDP--WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI  357 (400)
T ss_pred             HHHHHHHHHHHHHhcCC--cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence            88888887777665211  1111111222 23344444556677888999999999999999998876 46899999999


Q ss_pred             CCCC
Q 013453          439 GGAL  442 (442)
Q Consensus       439 ~G~l  442 (442)
                      +|++
T Consensus       358 gG~l  361 (400)
T PF03825_consen  358 GGWL  361 (400)
T ss_pred             HHHH
Confidence            8864

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.90  E-value=5.9e-21  Score=177.56  Aligned_cols=378  Identities=15%  Similarity=0.130  Sum_probs=241.9

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc----ccCCchh
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV  114 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~  114 (442)
                      |.++++.+....+...+......+.++.+.+++|.+..+      .+++..+..+...+.+|+.|+++|    |+||||.
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            345667777777777778888888888899999999988      999999999999999999999999    5999999


Q ss_pred             hHHH-HHHHHHHHHHHhccchHHH-----------------HHHHHHHHHhhcchhhH-HHHHhhhhccccch--hhhhh
Q 013453          115 IIMG-TASVVIFNTLFGLSVNFWM-----------------AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQ--ALGLS  173 (442)
Q Consensus       115 ~~~~-~~~~~i~~~~~~~a~~~~~-----------------l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r--~~~~~  173 (442)
                      ++++ .....++.++.+++++...                 ++++-.+..++.....+ ..++++|.+|+++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            8875 6666677777777766432                 22222333445554444 69999999998865  57899


Q ss_pred             hhhHhhhhHHHHHHHhhhhhccccccCCCccccc-----ccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCC
Q 013453          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE-----SLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDD  247 (442)
Q Consensus       174 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~  247 (442)
                      +.+...++|.++|+.++++.....     .+++.     ... ..+++..|.+.++..++.. +..+..||.+...+++.
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~  229 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVS-CANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF  229 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccc-cchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc
Confidence            999999999999999998752100     11111     001 2356777787777666654 45677888764322111


Q ss_pred             ccchhhhhhhhhhhhhhhhhhcccccccccccc-----cchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCCh
Q 013453          248 DSCDVSYDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST  322 (442)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (442)
                      ++     ++.++..+      .+.....+++++     .+.++..+++.++..+..+.+..+.+.|........+-+-+.
T Consensus       230 ~~-----~~~~~~~~------~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~  298 (477)
T TIGR01301       230 IN-----SEAAPPSK------HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA  298 (477)
T ss_pred             hh-----hhcccccc------cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence            00     00000000      000111222222     245788888888877776666555555543221110000000


Q ss_pred             --hH----HHHHHHHHHHHHHHHHhhHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHhhc---------------h
Q 013453          323 --QM----VGEVLAITGFSLLVFQLSLYPFLERILG-PIMVARIAGVLTIPLLTSYPYIAMLSG---------------F  380 (442)
Q Consensus       323 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~  380 (442)
                        ++    -.+....+.+...+.++ +...+.|++| ||+....+.++.++++....+.....+               .
T Consensus       299 ~y~~gvr~G~~~l~~~s~~~~i~s~-~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~  377 (477)
T TIGR01301       299 KYDDGVRAGAFGLMLNSVVLGITSI-GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPT  377 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcch
Confidence              01    12333444555556666 5666778887 467768887788888777765543211               0


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCh--hhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          381 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ--DQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      .......+.....+..........++++++..|+  +..|..+|+.|.+..+.+.+.....|
T Consensus       378 ~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g  439 (477)
T TIGR01301       378 GIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSG  439 (477)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            0012333444445556667778889999998884  56699999999999999888776554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.90  E-value=2e-20  Score=174.70  Aligned_cols=374  Identities=13%  Similarity=0.083  Sum_probs=220.4

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIM  117 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~~~~  117 (442)
                      .+.++.++...+...+..+.....+|.+. +++|.++.+      .+.+.+.+.....++.+++|+++||+ ||||++++
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~ili   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence            35566666677777777777777777664 568999988      99999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHhccc-hHHHHHHHHHHHHhhcchhhH-HHHHhhhhcccc--chhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          118 GTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      +.++..++.++.+... +...++++..+.++|.|...+ ..++++|.+|++  +|..++++.+...++|..++|.+.+++
T Consensus        82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462         82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987776543 223344444555566777767 588999999876  699999999999999999999999999


Q ss_pred             ccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCC---CCCCccchhhhh--------------h
Q 013453          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH---NDDDDSCDVSYD--------------A  256 (442)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~--------------~  256 (442)
                      .+       ..|         |+..|.+.++..++.++..+..++...+.   ++++.++++...              .
T Consensus       162 ~~-------~~G---------w~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (493)
T PRK15462        162 QE-------EYS---------WAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPA  225 (493)
T ss_pred             Hh-------hhC---------hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            87       344         44444555443333333322222111110   011110000000              0


Q ss_pred             hhhh-hhhhh-h---------------hhcccccccccccccch--hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCc
Q 013453          257 LESA-SAEVK-E---------------EEGREATPKKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  317 (442)
Q Consensus       257 ~~~~-~~~~~-~---------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (442)
                      +... ..+.. .               .....+.+  +.=|+|-  +..+.+...++...+....+.+.+|.......+-
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~  303 (493)
T PRK15462        226 LITVLFWKEWSVYALIVATIIGLGVLAKIYRKAEN--QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM  303 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh
Confidence            0000 00000 0               00000000  0001111  1222222333333333333444444443221121


Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc--h----hHHHHHHHHHHHHHHHHHHHHHHhh---chhhHHHHHH
Q 013453          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--P----IMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNC  388 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  388 (442)
                      +|++ ...+...+.+.+..++.+++....-.++.+  |    ..-..+++++.++++..+.+.....   +.....+++.
T Consensus       304 ~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~  382 (493)
T PRK15462        304 FGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVL  382 (493)
T ss_pred             ccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHH
Confidence            3332 224455566666666666644443333211  1    1235567777777766665433221   1123334556


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHH-HHHHhhhccc
Q 013453          389 ASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAGPAG  438 (442)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~gp~i  438 (442)
                      ..++...+.....|...+.+++..|++.+|..+|+..... .+|..++..+
T Consensus       383 ~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~  433 (493)
T PRK15462        383 GLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVI  433 (493)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777888899999999999999999999999986643 5666555443

>PRK09669 putative symporter YagG; Provisional

Probab=99.88  E-value=6.2e-20  Score=174.03  Aligned_cols=356  Identities=15%  Similarity=0.051  Sum_probs=218.0

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhch-hHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCch
Q 013453           39 PITELFSIWIIVLCTALPISSLFP-FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP  113 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~  113 (442)
                      ++++.+.-.+..+........... ..+.+.+++|++..+      +|.+.++..+..++..|+.|+++||    +||||
T Consensus         7 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrr   80 (444)
T PRK09669          7 TTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFR   80 (444)
T ss_pred             cHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcc
Confidence            344444333333333333333333 345667889999999      9999999999999999999999998    78755


Q ss_pred             h-hHHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhhcchh-hHHHHHhhhhc-cccchhhhhhhhhHhhhhHHH
Q 013453          114 V-IIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLL-GPIKAYACEIF-REEHQALGLSTVSTAWGIGLI  184 (442)
Q Consensus       114 ~-~~~~~~~~~i~~~~~~~a~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~  184 (442)
                      . ++.+.+..++..++....++      +..+++..++.+.+.... .|..++.+|+. +++||.+..+.......+|..
T Consensus        81 p~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~  160 (444)
T PRK09669         81 PYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL  160 (444)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            5 55677777777665544432      456666666777664444 44588999988 568899988888888888888


Q ss_pred             HHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhh
Q 013453          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAE  263 (442)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  263 (442)
                      +++.+...+...       ++.. .. +.+|+..+.+.+++.++..+ ..+..+|.++..+++   +             
T Consensus       161 i~~~~~~pl~~~-------~~~~-~~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~---~-------------  215 (444)
T PRK09669        161 IVSVIALPLVDI-------LGKG-DE-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN---S-------------  215 (444)
T ss_pred             HHHHHHHHHHHH-------hCCC-ch-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC---C-------------
Confidence            888766655541       1111 01 34566666666666555433 334445542221100   0             


Q ss_pred             hhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhH
Q 013453          264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (442)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (442)
                           .+.....++++|||.++...+..++............ .|+....    .+ ++...+.+.....+..+++.+ +
T Consensus       216 -----~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~-~y~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~-~  283 (444)
T PRK09669        216 -----SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGAT-LYYVNYV----LL-RPDLATLFLVTGMIAGLFGAL-L  283 (444)
T ss_pred             -----CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhh-heeeeee----cC-CHHHHHHHHHHHHHHHHHHHH-H
Confidence                 0012345667899998887776665544443333333 3333221    12 233334444444566666655 6


Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC-------hhh
Q 013453          344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQ  416 (442)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  416 (442)
                      ..++.||+++|+....+.....+....+.+..   ....+. ..+..++.+.......+..+++++|..|       .+.
T Consensus       284 ~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~  359 (444)
T PRK09669        284 SERLLGKFDRVRAFKWTIVAFVILSALIFFIP---PSNVWL-IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL  359 (444)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC---cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc
Confidence            66788888999888877655544333222221   112222 2333334445555666778888888775       234


Q ss_pred             hhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          417 RGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       417 ~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      .|...|+.+....+|.++||.+.|.
T Consensus       360 ~g~~~s~~~~~~klg~alg~~i~g~  384 (444)
T PRK09669        360 DGLVFSTNLFAIKLGLAIGGAVVGW  384 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999999999999988775

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2e-22  Score=166.35  Aligned_cols=357  Identities=13%  Similarity=0.081  Sum_probs=232.8

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHHHHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASV  122 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~  122 (442)
                      ...++..|-+++++.........+.+|.+++.++      ..++.+.|.....+..+++|++.|| +|-|..-++-+...
T Consensus        47 v~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   47 VFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             HHHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            3455555666667777777778888888998888      8999999999999999999999997 78888777777777


Q ss_pred             HHHHHHHhc---cchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          123 VIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       123 ~i~~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      .++.++++.   .+.+|++..+|++.|+|.-...++ +.+..-|+..||.+.++|+......+|+.+-..+.+++.+..+
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            788877765   679999999999999987666665 8999999999999999999999999999988888888876332


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc--cccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (442)
                      ..   ++-...- ..+-  ...+....+...++....+  -|.+.+..-+.++.               ...+..+....
T Consensus       201 ~~---~~~~ghT-~LG~--~l~~~~~tc~~slical~lg~~D~rAerilh~e~g---------------~~Ge~pkLtdv  259 (459)
T KOG4686|consen  201 RM---FPGVGHT-LLGL--WLCFEVKTCKQSLICALSLGLSDDRAERILHLEEG---------------FLGEEPKLTDV  259 (459)
T ss_pred             Hh---cccchHH-HHHH--HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcC---------------cccCCcccccc
Confidence            11   1100000 0000  0011111111111111110  11110000000000               00001111112


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (442)
                      .-+ .|.+|...++++++....+-+.+.-+.+++     +++|+|+.+++.+.+.......+... +.+.+.|+.|++..
T Consensus       260 ~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~-----~rfGlS~~~a~~i~s~vy~Isav~sp-vfg~i~Dk~G~n~~  332 (459)
T KOG4686|consen  260 NTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQ-----KRFGLSAVSAGNILSTVYGISAVLSP-VFGAISDKYGFNLW  332 (459)
T ss_pred             ccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHH-----HhhCCChhhccchhhhhhhhhhhhhh-hHHHhHhhhcceeh
Confidence            222 367888888888877766666555555544     45899999999998888887777777 56666777787665


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhh
Q 013453          357 ARIAGVLT-IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  435 (442)
Q Consensus       357 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  435 (442)
                      ...+..+. ..+-..+.+.    ...++....+.++    .........+..++.++|+++.|++.|.++.++++|-++.
T Consensus       333 wv~~a~~~tl~~H~~l~Ft----~lsPy~~m~~lGL----sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i  404 (459)
T KOG4686|consen  333 WVASACILTLLGHSGLFFT----FLSPYTSMTFLGL----SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFI  404 (459)
T ss_pred             hHHHHHHHHHHHhhhHHhh----hccHHHHHHHHhh----hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHH
Confidence            54443333 3332222221    1123333333333    3334444566777778899999999999999999999999


Q ss_pred             cccCCCC
Q 013453          436 PAGGGAL  442 (442)
Q Consensus       436 p~i~G~l  442 (442)
                      |+++|.+
T Consensus       405 ~Iiag~i  411 (459)
T KOG4686|consen  405 PIIAGFI  411 (459)
T ss_pred             hhhhhee
Confidence            9999864

>TIGR00788 fbt folate/biopterin transporter

Probab=99.87  E-value=7e-21  Score=180.24  Aligned_cols=367  Identities=12%  Similarity=0.037  Sum_probs=229.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC-----Cchhh
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVI  115 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~~  115 (442)
                      ..+..+....+..++.........|.+.+++|++.++      ++...+...+...+-.+ +|+++||++     ||+.+
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l   98 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYL   98 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHH
Confidence            3445566677777877333345556677789999999      99999999999988666 999999998     77777


Q ss_pred             HHHHHHH-HHHHHHHhccchHHHHH-HHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhh---hHhhhhHHHHHHHh
Q 013453          116 IMGTASV-VIFNTLFGLSVNFWMAV-LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV---STAWGIGLIIGPAL  189 (442)
Q Consensus       116 ~~~~~~~-~i~~~~~~~a~~~~~l~-~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~---~~~~~~g~~~g~~~  189 (442)
                      +++.++. .+.....+..++..... +.+++.+++.+...+ +.++..|..+ +++....+..   ....++|.++|+.+
T Consensus        99 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l  177 (468)
T TIGR00788        99 VLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL  177 (468)
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence            8877666 34444444445544444 478899999888877 5999999998 5554433333   33445899999999


Q ss_pred             hhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchh-hhhhhhhhhhhhhhhh
Q 013453          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV-SYDALESASAEVKEEE  268 (442)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  268 (442)
                      +|.+.+                ..+|+..+.+.+.+.++..+...+++|++.....+.++.+. ........   ..+..
T Consensus       178 ~G~l~~----------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  238 (468)
T TIGR00788       178 GGPLLD----------------KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLG---VLANV  238 (468)
T ss_pred             HHHHHH----------------hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhh---HHHHH
Confidence            999988                34455555777766666655567788864211111100000 00000000   00000


Q ss_pred             cccccccccccccchhHHHHHHHHH-HHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHH
Q 013453          269 GREATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (442)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (442)
                      ++.....++.+++|.++...+..++ +... .+.  ..+.++.   ..+..|+++.+.|......+++.+++.....++ 
T Consensus       239 ~~~~~~l~~~l~~~~i~~~l~fifl~~~~~-~~~--~~~~f~~---~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~-  311 (468)
T TIGR00788       239 KVQILGLRGAIQLLEIAKPLIFIFLSYANL-PGA--SGSVFCA---TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRF-  311 (468)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHhhc-CCC--CceeEEE---EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH-
Confidence            0111233445677887765554444 2211 111  1111111   123589999999999999999999998855554 


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhc----hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHH
Q 013453          348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSG----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI  423 (442)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  423 (442)
                      .+|++.|+.+.++.++..++...........+    ......+.....+..............++.+..|++.+|+..++
T Consensus       312 ~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al  391 (468)
T TIGR00788       312 LKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFAL  391 (468)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHH
Confidence            56778888888887777766543221110000    01111122222233333334445567888889999999999999


Q ss_pred             HHHHHHHHHhhhcccCCC
Q 013453          424 AMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       424 ~~~~~~~g~~~gp~i~G~  441 (442)
                      .+++.++|..+++.++|.
T Consensus       392 ~~s~~~lg~~v~~~~gg~  409 (468)
T TIGR00788       392 LASILHLGSSVSGFLGVL  409 (468)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999987664

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PTZ00207 hypothetical protein; Provisional

Probab=99.86  E-value=1.9e-19  Score=170.85  Aligned_cols=128  Identities=13%  Similarity=0.158  Sum_probs=109.6

Q ss_pred             hhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc-----
Q 013453           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----  132 (442)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-----  132 (442)
                      +......|.+.+++|++..+      .+++.++. .....++++.|++.||+|||+++.++.+++.++.++++++     
T Consensus        44 y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34556678999999999998      88888774 4456788889999999999999999999999999999987     


Q ss_pred             -chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHH-HHHhhhhh
Q 013453          133 -VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFL  193 (442)
Q Consensus       133 -~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l  193 (442)
                       ++++.+++.|++.|+|.+...+ +...+.+++| ++||++.|+...+.++|.++ +++..+++
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             6899999999999999888777 5888899987 78999999999999999975 55544444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.86  E-value=1.3e-19  Score=172.95  Aligned_cols=362  Identities=12%  Similarity=0.074  Sum_probs=220.8

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHH-HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc----ccCCc-hh
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRK-PV  114 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr-~~  114 (442)
                      +..+.-.+..+...+......+.++ .+.+.+|++...      +|.+..+..+.-++..|+.|.++|    |+||| +.
T Consensus         6 ~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~   79 (473)
T PRK10429          6 TTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW   79 (473)
T ss_pred             hHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh
Confidence            3333344444555555555566554 445667999999      999999999999999999999999    66984 55


Q ss_pred             hHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHhhcchhhH-HHHHhhhhc-cccchhhhhhhhhHhhhhHHHHH
Q 013453          115 IIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIG  186 (442)
Q Consensus       115 ~~~~~~~~~i~~~~~~~a~------~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g  186 (442)
                      ++++.+..+++..++...+      .+..+++..++.+++.....+ ..++..|.. +++||.+..+......++|..+.
T Consensus        80 il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~  159 (473)
T PRK10429         80 ILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT  159 (473)
T ss_pred             HhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777765554433      134555666677777666655 588999998 58999999988777777776666


Q ss_pred             HHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhh
Q 013453          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVK  265 (442)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (442)
                      +.+...+.+       .+|....  ..+|+....+.+++.++.. +..+..||.++....+.++++              
T Consensus       160 ~~~~~~~~~-------~~g~~~~--~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--------------  216 (473)
T PRK10429        160 AGFTLPFVN-------YVGGGDR--GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS--------------  216 (473)
T ss_pred             HHHHHHHHH-------HhCCCch--hhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc--------------
Confidence            665554433       1111100  2245555455555544433 334446665322111100000              


Q ss_pred             hhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHH
Q 013453          266 EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (442)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (442)
                        +.+.+...+.+++||.++..++..++............+ |+....    .+ +....+.+.....++.+++.+ +..
T Consensus       217 --~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~-y~~~y~----~~-~~~~~~~~~~~~~i~~ii~~~-~~~  287 (473)
T PRK10429        217 --HLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAI-YYFTYV----IG-DADLFPYYLSYAGAANLVTLI-LFP  287 (473)
T ss_pred             --CCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhee-eEEEEE----CC-CHHHHHHHHHHHHHHHHHHHH-HHH
Confidence              001112334567888888777777666655444444433 322211    22 455566666666677888776 667


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC-------hhhhh
Q 013453          346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRG  418 (442)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g  418 (442)
                      ++.||+|+|+.+..+..+..++...+...........+. ..+...+.+...........++.+|..|       .+..|
T Consensus       288 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G  366 (473)
T PRK10429        288 RLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL-IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCES  366 (473)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchh
Confidence            788899999998877766555544433221111112222 2233333444445556667778888765       34456


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCC
Q 013453          419 AANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       419 ~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ...|.......++.++++.+.|+
T Consensus       367 ~~~s~~~~~~K~~~al~~~i~g~  389 (473)
T PRK10429        367 IAYSVQTMVVKGGSAFAAFFIGV  389 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999988775

>PRK09848 glucuronide transporter; Provisional

Probab=99.85  E-value=1.4e-18  Score=165.15  Aligned_cols=351  Identities=17%  Similarity=0.111  Sum_probs=207.2

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc----CCch
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRKP  113 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~----Grr~  113 (442)
                      +++..+.-.+..+...+......+.+ +.+.+.+|++..+      +|.+.+...+..++..++.|+++||.    ||||
T Consensus         6 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~   79 (448)
T PRK09848          6 SWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFR   79 (448)
T ss_pred             cHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCch
Confidence            44444444455555555555555555 4555667999999      99999999999999999999999996    7777


Q ss_pred             hh-HHHHHHHHHHHHHH-hc----cc--hHHHHHHHHHHHHhhcchhhH-HHHHhhhhcc-ccchhhhhhhhhHhhh---
Q 013453          114 VI-IMGTASVVIFNTLF-GL----SV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWG---  180 (442)
Q Consensus       114 ~~-~~~~~~~~i~~~~~-~~----a~--~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~---  180 (442)
                      .. .++.+...+...+. ..    .+  .....++..++.+++.+...+ ..++..|..+ +++|.+..+.-..+.+   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~  159 (448)
T PRK09848         80 PFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTF  159 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            55 55555444444332 21    11  223344555677777777765 4677776664 4678877665554433   


Q ss_pred             --hHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhh
Q 013453          181 --IGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDAL  257 (442)
Q Consensus       181 --~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~  257 (442)
                        ++..++|.+++.....       .       ...|.....+.++++++. ++.....||+++.+.++    ..     
T Consensus       160 ~~~~~~~~p~i~~~~g~~-------~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----~~-----  216 (448)
T PRK09848        160 VCLAFLIGPSIKNSSPEE-------M-------VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----PS-----  216 (448)
T ss_pred             HHHHHHHHHHHHHhCCCc-------h-------hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----CC-----
Confidence              4455566555433210       0       001111112222222222 22333455543221110    00     


Q ss_pred             hhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHH
Q 013453          258 ESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL  337 (442)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (442)
                                   ....+++++|||.++...+..++............+.|...     .+|.++...++......++.+
T Consensus       217 -------------~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~  278 (448)
T PRK09848        217 -------------LKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRY-----VLNDTGLFTVLVLVQNLVGTV  278 (448)
T ss_pred             -------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEee-----ecCChHHHHHHHHHHHHHHHH
Confidence                         11235668899999888777777666666555444444332     256565555544444455666


Q ss_pred             HHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh--
Q 013453          338 VFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--  415 (442)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  415 (442)
                      ++.+ ...++.||+++++.+.++..+..++...+.+..   ....+. ......+.+.+.....+...++..+..|.+  
T Consensus       279 ~~~~-l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~---~~~~~~-~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~  353 (448)
T PRK09848        279 ASAP-LVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS---VWSLPV-ALVALAIASIGQGVTMTVMWALEADTVEYGEY  353 (448)
T ss_pred             HHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---chhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            6666 666777888999998888877776655554321   112222 222223333444455566777777777644  


Q ss_pred             -----hhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          416 -----QRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       416 -----~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                           .+|...|+.+....+|.++|+.+.|.
T Consensus       354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             hhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 45999999999999999999887664

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.84  E-value=1.4e-19  Score=170.71  Aligned_cols=335  Identities=14%  Similarity=0.110  Sum_probs=237.0

Q ss_pred             hhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc----ccCCchhhH-HHHHHHHHHHHHHhcc-c--
Q 013453           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVII-MGTASVVIFNTLFGLS-V--  133 (442)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~~~-~~~~~~~i~~~~~~~a-~--  133 (442)
                      ...+.+.+.+|+++..      .|.+..+..+-.++..|+.|.++|    |+||||..+ ++.+..+++.+++... +  
T Consensus        23 ~~~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~   96 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAG   96 (428)
T ss_pred             HHHHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccch
Confidence            3446677788999998      999999999999999999999999    899776655 6778888888777765 4  


Q ss_pred             -----hHHHHHHHHHHHHhhcchhhH-HHHHhhhhcc-ccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccc
Q 013453          134 -----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (442)
Q Consensus       134 -----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (442)
                           ....+++..++..++...... ..++..|..+ ++||.+..+.-..+..+|..+...+.+.+.+..       |.
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~-------g~  169 (428)
T PF13347_consen   97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWF-------GG  169 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh-------cc
Confidence                 234456677777887666655 5899999997 578999999999999999987777777777522       21


Q ss_pred             cccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhH
Q 013453          207 ESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (442)
                      ...  ..+|+....+.+++.++.. +..+..+|.++..++++                   ++.+.++..+++++||.++
T Consensus       170 ~~~--~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~-------------------~~~~~~~~~~~~~~nr~~~  228 (428)
T PF13347_consen  170 GDT--SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE-------------------KKISLRDSLRSLFRNRPFR  228 (428)
T ss_pred             Ccc--chHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc-------------------cccccccchhhhcccchHH
Confidence            110  1256666676666666654 44566677211111111                   0112345578889999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHH
Q 013453          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  365 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (442)
                      ...+..++............+.|....     .+.+ ...+.+.....++.+++.+ +..++.||+|+|+....+..+.+
T Consensus       229 ~l~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~~-~~~~l~~r~gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  229 ILLLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGSP-LWGRLSKRFGKKKVYIIGLLLAA  301 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHccceeehhhhHHHHH
Confidence            888888887777766666665554433     2333 4556666677778888777 77889999999999999999988


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCh-------hhhhHHHHHHHHHHHHHHhhhccc
Q 013453          366 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ-------DQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      ++.+++.+...    .......+...+.+...........++.+|..+.       ++.|...|+.+....++..+++.+
T Consensus       302 ~~~~~~~~~~~----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  302 LGFLLLFFLGP----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             HHHHHHHHHHh----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence            88877766542    1222233334444445555667778888887763       446899999999999999999887


Q ss_pred             CCC
Q 013453          439 GGA  441 (442)
Q Consensus       439 ~G~  441 (442)
                      .|.
T Consensus       378 ~g~  380 (428)
T PF13347_consen  378 VGL  380 (428)
T ss_pred             HHH
Confidence            664

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.84  E-value=9.7e-19  Score=157.74  Aligned_cols=353  Identities=14%  Similarity=0.148  Sum_probs=222.2

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +..+......+...+..+...|..+...++ .|++.++      +|.+.++..+...+.+|+.|.++||.|.||-++..+
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            456666777777777888889999888875 8999999      999999999999999999999999999777655443


Q ss_pred             HHHH--HHHH-HHhccc----hHH-HHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh
Q 013453          120 ASVV--IFNT-LFGLSV----NFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       120 ~~~~--i~~~-~~~~a~----~~~-~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                      ....  .+.+ ...+.|    |.+ ..+++-+..|+......|+ -+++.+..  ++.+.-.|-..+..++|.+++..++
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~  158 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLA  158 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHh
Confidence            3222  2222 222222    221 2222222333333333342 44444443  3455667888889999999999999


Q ss_pred             hhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCccchhhhhhhhhhhhhhhhhhc
Q 013453          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (442)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (442)
                      |.+.+..                 -...+++....+++..++.... |+.++..+..+....+.              ++
T Consensus       159 G~L~~i~-----------------p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~--------------~~  207 (412)
T PF01306_consen  159 GILFNIN-----------------PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK--------------DK  207 (412)
T ss_dssp             HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------------------
T ss_pred             heeeeeC-----------------ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC--------------CC
Confidence            9998621                 1233344444444444333333 33332211111100000              01


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013453          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (442)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (442)
                      ...+...+++|+|++|...+........+..+...++.|.....  ++.+.+....|++.+..-+..++.-. ..+++.+
T Consensus       208 ~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f--~~~~~g~~~~G~l~s~~v~~E~~~m~-~~p~li~  284 (412)
T PF01306_consen  208 VSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF--QSAGQGNQMYGYLWSVQVFLEALMMF-FSPWLIN  284 (412)
T ss_dssp             --HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             CcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccChhHHhHHHHHHHHHHHHHHH-HHHHHHH
Confidence            11223567899999998887766666666677666777765432  22355677799999987777777766 8888999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHH-HHHH
Q 013453          350 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGM  428 (442)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~  428 (442)
                      |+|.|+.+.++..+..+=.....+.++     .+ .+...-.+.+.-.........-++++.+|++..++...+. +...
T Consensus       285 rig~k~~Lllag~i~~iRi~~~~~~~~-----~~-~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~  358 (412)
T PF01306_consen  285 RIGAKNLLLLAGVIMAIRIIGSGFATN-----PW-VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAK  358 (412)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHT--S-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTH
T ss_pred             hcChHhHHHHHHHHHHHHHHHHhhhcc-----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence            999999999998888888777666432     22 2444444444444455556677888889999999999986 6777


Q ss_pred             HHHHhhhcccCCC
Q 013453          429 SLFKAAGPAGGGA  441 (442)
Q Consensus       429 ~~g~~~gp~i~G~  441 (442)
                      ++|.++.+.++|.
T Consensus       359 ~~~~~i~s~~~G~  371 (412)
T PF01306_consen  359 QIGIIILSPLAGY  371 (412)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHh
Confidence            8898888887774

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.83  E-value=1.6e-18  Score=155.16  Aligned_cols=277  Identities=15%  Similarity=0.109  Sum_probs=188.4

Q ss_pred             ccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCC-cccccc
Q 013453          131 LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSSES  208 (442)
Q Consensus       131 ~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~gw~~  208 (442)
                      ...+++.++++-++.|.|.+...+ ++.++++..++|++.+.+++.+..+++|..++|.+++.+......... ..+-..
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            457899999999999999999988 599999999999999999999999999999999999998842110000 000000


Q ss_pred             cccCCcChhHHHHHHHHHHHHHHHHhhc--cccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHH
Q 013453          209 LFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  286 (442)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (442)
                      .. ...|+.++.+.+...++..+.+.+.  ||.++++.+  +  ...              +  +....++.+++|.++.
T Consensus        86 ~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~--~--~~~--------------~--~~~~~~~~~~~~~~~l  144 (310)
T TIGR01272        86 AE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA--R--VSS--------------G--DTTQKTSAFQFTHLVL  144 (310)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc--c--ccc--------------c--cccchhhHHhhHHHHH
Confidence            00 1346666665554444443333333  442211100  0  000              0  0011234677888888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHH
Q 013453          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (442)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (442)
                      ..+..+++.....+..++.+.|+.++   +.+|+++.+.+...+....+.+++++ +..++.+|+++++.+.++..+..+
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr~-~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGRF-IGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHH
Confidence            88888888888889999999998643   23689999999999999999999998 777788888988888877776666


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          367 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +..+.....   .  ... . ......+++....+|...+...+..|+ +.+++.++. ....+|++++|.+.|.
T Consensus       221 ~~~l~~~~~---~--~~~-~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~  286 (310)
T TIGR01272       221 LSIGAALTH---G--YVA-M-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGS  286 (310)
T ss_pred             HHHHHHHcC---C--HHH-H-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHH
Confidence            654333221   1  111 1 122234456667788888888777774 466777775 5677999999988775

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.83  E-value=1.7e-19  Score=164.34  Aligned_cols=202  Identities=16%  Similarity=0.213  Sum_probs=162.8

Q ss_pred             CCCCCCChhhHHHHHHHHHHhHhcchhhchhHHHHHHH--hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC
Q 013453           33 DTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG  110 (442)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G  110 (442)
                      .+.++.+||.++...+..++.....+.+.+..-.+.++  .+.+.+.      .|++.++..++.+++++.+|+++.|.+
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~   99 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTG   99 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccC
Confidence            33445678888899999999999999999988777777  4555555      999999999999999999999999998


Q ss_pred             C-chhhHHHHHHHHHHHHHH-hc---cc-hHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHH
Q 013453          111 R-KPVIIMGTASVVIFNTLF-GL---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI  184 (442)
Q Consensus       111 r-r~~~~~~~~~~~i~~~~~-~~---a~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (442)
                      . |+.++.+.++..+++++. ++   .+ .-+.++++|++.|+|.|......+|+++....++|.++++....+..+|..
T Consensus       100 ~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i  179 (488)
T KOG2325|consen  100 SVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGII  179 (488)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHH
Confidence            7 999999999999999988 33   33 678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccccCCCcccccccc--cCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCC
Q 013453          185 IGPALGGFLAQPAEKYPNLFSSESLF--GKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHND  245 (442)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~  245 (442)
                      +||.++..+....     .-|++...  ...-|-.+.++.+++.++.++ +.++++|.++...+
T Consensus       180 lGp~~q~~f~~Lg-----~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~  238 (488)
T KOG2325|consen  180 LGPTIQLAFTPLG-----EKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIID  238 (488)
T ss_pred             HhHHHHHHHhhhc-----CCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccc
Confidence            9999988876532     22332221  022356677888888877654 45667787665433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.82  E-value=2.6e-17  Score=154.43  Aligned_cols=333  Identities=17%  Similarity=0.133  Sum_probs=229.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH-HHHHHHHHHHHhcc-ch-HHHHHHHHHHHHhhcchhhH-HH
Q 013453           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TASVVIFNTLFGLS-VN-FWMAVLTRFLLGSLNGLLGP-IK  156 (442)
Q Consensus        81 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~-~~~~~i~~~~~~~a-~~-~~~l~~~r~l~G~~~g~~~~-~~  156 (442)
                      +.+.++..++..+..++..|+.|.++|+-|+||.++.. ..+..+.+.+..+. ++ ++...+.-++.-++.+...+ ..
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467889999999999999999999999977666554 45555566666653 43 44344444444456666666 48


Q ss_pred             HHhhhhccccch--------------------------hhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccc
Q 013453          157 AYACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (442)
Q Consensus       157 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~  210 (442)
                      +++.|..+++++                          ++..+.-.....+|.++.-++.-.+....+..       .. 
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-------~~-  220 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-------AS-  220 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-------cc-
Confidence            999999999888                          88888888888888888877776665422110       00 


Q ss_pred             cCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCcc--chhhhhhhhhhhhhhhhhhcccccccccccccchhHHH
Q 013453          211 GKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDS--CDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (442)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (442)
                      ...+.|..+.+.++.-++. +...+++||.|+....++..  .....++              -....+++.|.|.....
T Consensus       221 ~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~--------------l~~t~k~~~~~~~~~~f  286 (477)
T PF11700_consen  221 NTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKR--------------LWRTFKEIRKLRQLFLF  286 (477)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHH--------------HHHHHHHHHhChHHHHH
Confidence            0344577777777665554 45667788876532221111  0111011              12344566677888888


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchh--HHHHHHHHHHH
Q 013453          288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVLTI  365 (442)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  365 (442)
                      ++.++++.-.......+...|....     +|++..+...+.....+.++++.+ +.++++||+|.|  +.+........
T Consensus       287 Lia~~l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~-~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  287 LIAYFLYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGAL-LFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHH
Confidence            8999988877777777777776643     799999999999999999999998 777999999988  66665554443


Q ss_pred             HHHHHHH--HHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          366 PLLTSYP--YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       366 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +..+...  +.....+......+.+..++.+.+....++...++.+++.|+++.+..+|++.......+.+||.+.|.
T Consensus       361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222211  111111112222244455556667778889999999999999999999999999999999999998875

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11462 putative transporter; Provisional

Probab=99.80  E-value=9.6e-17  Score=152.07  Aligned_cols=355  Identities=14%  Similarity=0.053  Sum_probs=208.4

Q ss_pred             ChhhHHHHHHHHHHhHhcchhhchhH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCch
Q 013453           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP  113 (442)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~  113 (442)
                      ++++.+.-.++.+...+........+ ..+.+.+|++...      +|.+..+.-+--++..|+.|.++||    +||||
T Consensus         7 ~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~r   80 (460)
T PRK11462          7 SVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFR   80 (460)
T ss_pred             cHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcc
Confidence            33444433344444444444444333 5566778999999      9999999999999999999999995    79876


Q ss_pred             hhH-HHHHHHHHHHHHHhccch------HHHHHHHHHHHHhhcchhhH-HHHHhhhhcc-ccchhhhhhhhhHhhhhHHH
Q 013453          114 VII-MGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLI  184 (442)
Q Consensus       114 ~~~-~~~~~~~i~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~  184 (442)
                      ..+ ++.+..+++.+++-..++      ...+++.-.+..++...... -.++.+|..+ ++||.+..++...+..+|..
T Consensus        81 p~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~  160 (460)
T PRK11462         81 PWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM  160 (460)
T ss_pred             hhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            655 566777777766554442      34456666667777666544 5888999887 78999999999999999988


Q ss_pred             HHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhh
Q 013453          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAE  263 (442)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  263 (442)
                      +++.+...+.+.       .|.+. . ..+|+....+.+++.++... .....+|.++..+++    ..           
T Consensus       161 ~~~~~~~plv~~-------~g~~~-~-~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~----~~-----------  216 (460)
T PRK11462        161 LSTVLMMPLVNL-------IGGDN-K-PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTT----TS-----------  216 (460)
T ss_pred             HHHHHHHHHHHH-------hCCCc-h-hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccC----CC-----------
Confidence            888887666542       22110 0 23455544555555444433 333345533211110    00           


Q ss_pred             hhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhH
Q 013453          264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (442)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (442)
                             .+...+..++||.++......++.........+....|....     .+ ++...+.+.....++.+++.. +
T Consensus       217 -------~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g-~~~~~~~~l~~~~i~~iig~~-l  282 (460)
T PRK11462        217 -------MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LG-TPEVFVAFLTTYCVGNLIGSA-L  282 (460)
T ss_pred             -------HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cC-ChHHHHHHHHHHHHHHHHHHH-H
Confidence                   112345677888877666555554444333333333222211     22 233445566666777788776 7


Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC-------hhh
Q 013453          344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQ  416 (442)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  416 (442)
                      ..++.||+++|+....+.....+...++.+.+.  . ..+.... ..++.+.......+..+++..|..+       .+.
T Consensus       283 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~  358 (460)
T PRK11462        283 AKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM--Q-ASITMFV-FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRL  358 (460)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch--h-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCc
Confidence            777888888887765444433332222222211  1 1111111 1222233333444555666776555       333


Q ss_pred             hhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          417 RGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       417 ~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      .|...+.......+|.++++.+.|.
T Consensus       359 ~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        359 TGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555677778888999998887764

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.80  E-value=2.5e-16  Score=142.25  Aligned_cols=377  Identities=13%  Similarity=0.123  Sum_probs=237.0

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhH-HHHHHHhc----ccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchh
Q 013453           41 TELFSIWIIVLCTALPISSLFPFL-YFMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPV  114 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~  114 (442)
                      |.++.+...-+-.-++++.....+ -.+..+++    .++++      ..-+.++|..-.-+..+++|+++|| .|+|++
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            557777777777777766655554 44455666    88887      7777788777777899999999999 599999


Q ss_pred             hHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcchhhH-HHHHhhhhcccc--chhhhhhhhhHhhhhHHHHHHHh
Q 013453          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPAL  189 (442)
Q Consensus       115 ~~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~  189 (442)
                      +..+.++..++.++.+.+.  +...++++-++.++|.|..-+ ..+++.|.+|++  +|-..++++.++.++|+.++|.+
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            9999999999999999884  788999999999999999999 699999999865  47788999999999999999999


Q ss_pred             hhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCC----CCCCccchhhh---h-----hh
Q 013453          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH----NDDDDSCDVSY---D-----AL  257 (442)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~---~-----~~  257 (442)
                      .+++.+                +++|...|...++--...++.....+..-...    +.+........   .     ..
T Consensus       175 ~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (498)
T COG3104         175 TGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMIL  238 (498)
T ss_pred             HHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHH
Confidence            999998                45555555666655555555544444322111    11111111000   0     00


Q ss_pred             hhh--hhhhhh--------------h-hccccccccccccc-ch---hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccC
Q 013453          258 ESA--SAEVKE--------------E-EGREATPKKSLLKN-WP---LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG  316 (442)
Q Consensus       258 ~~~--~~~~~~--------------~-~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (442)
                      ...  ....++              . --.+.....+...+ ++   ...+.+...++...+....+.+..|.......+
T Consensus       239 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~  318 (498)
T COG3104         239 AALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQ  318 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence            000  000000              0 00000011111111 11   223333334444444444445555554332222


Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHhhHHHHHHH--hhc--h--hHHHHHHHHHHHHHHHHHHHHHHh----hchhhHHHH
Q 013453          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER--ILG--P--IMVARIAGVLTIPLLTSYPYIAML----SGFGLAFLL  386 (442)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  386 (442)
                      -+|++ ...+...+.+.+..++..++......+  +.+  +  +.-..++..++..+++++......    .+.....+.
T Consensus       319 ~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~l  397 (498)
T COG3104         319 IFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWL  397 (498)
T ss_pred             cccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHH
Confidence            13322 234556666677777776645544444  211  1  223345556666666655554211    122334445


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          387 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      +...++..++.....|...+++.+..|+...+..+++.......|..++..+++
T Consensus       398 il~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         398 VLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            555566677888889999999999999999999999999988888888877765

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.79  E-value=2.4e-17  Score=152.80  Aligned_cols=356  Identities=19%  Similarity=0.262  Sum_probs=233.4

Q ss_pred             HHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHH
Q 013453           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (442)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~  125 (442)
                      +.+-.+...+......+..+...+.++.+...+ .....+.-.....+...+.++..|.++||+|||..+.+..+...+.
T Consensus        27 ~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~  105 (463)
T KOG2816|consen   27 LFLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILP  105 (463)
T ss_pred             HHHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHh
Confidence            334444444444444555555556555444331 1112333333446788899999999999999999999999999888


Q ss_pred             HHHHhccchHHHHHHHHHHHHhhcch---hhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCC
Q 013453          126 NTLFGLSVNFWMAVLTRFLLGSLNGL---LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (442)
Q Consensus       126 ~~~~~~a~~~~~l~~~r~l~G~~~g~---~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (442)
                      .+...+..  |++++   +.|+..+.   .....++++|....++|...+++.+.....+..++|.+++.+..       
T Consensus       106 ~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~-------  173 (463)
T KOG2816|consen  106 ALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK-------  173 (463)
T ss_pred             HHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------
Confidence            88877765  44444   55654333   33358999999999999999999999999999999999999998       


Q ss_pred             cccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccccc
Q 013453          203 LFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (442)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (442)
                               ..+...++.+..+..++.. ....++||+.++.++++......  +...  . ..++..+........-.+
T Consensus       174 ---------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~  239 (463)
T KOG2816|consen  174 ---------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL--TPGS--L-DSSHVADAFQSLTKVGPD  239 (463)
T ss_pred             ---------hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc--CCCc--c-cchhhhhhhhhhcccCCC
Confidence                     5556667777777776664 45677898876544431100000  0000  0 000000111111222223


Q ss_pred             chhHHHHHHHHHHHHHHhhHHH-HHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSE-IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (442)
                      |..+......+........-.. ....|     ....++++..+.+.+.+..+....+++.+....+.+.++.++....+
T Consensus       240 r~~l~l~l~~~~~~~~~~~~~~~~~~~y-----l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lG  314 (463)
T KOG2816|consen  240 RLLLLLLLVAFLSSLPEAGGASDVLLLY-----LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLG  314 (463)
T ss_pred             ccchHHHHHHHHHHHHHhcCceeEEEEE-----EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHH
Confidence            3344433333332222221111 11122     22348999999999999999999999998888999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      .....+....+.+...     .|....  ............+...+..+...+++++|+++++...+..+...++|.+.+
T Consensus       315 l~~~~~~~~~~af~~~-----~w~~~~--~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~  387 (463)
T KOG2816|consen  315 LLSEFLQLLLFAFATE-----TWMMFA--AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYG  387 (463)
T ss_pred             HHHHHHHHHHHHHhcc-----chhhhH--HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence            8888888887777543     222111  122223455677888999999999999999999999999999999987654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.2e-16  Score=145.61  Aligned_cols=363  Identities=17%  Similarity=0.124  Sum_probs=247.6

Q ss_pred             CCChhhHHHHHHHHHHhHhcchhhchhHH-HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc----cCC
Q 013453           37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGR  111 (442)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Gr  111 (442)
                      +.+.+....-.+..+...+........+. .+.+.+|++...      +|.+..+.-+--++.-|+.|.+.||    +||
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr   81 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR   81 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence            34445555555555555555555555554 445668999998      9999999999999999999999995    887


Q ss_pred             chh-hHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHhhcchhh-HHHHHhhhhcc-ccchhhhhhhhhHhhhhH
Q 013453          112 KPV-IIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLG-PIKAYACEIFR-EEHQALGLSTVSTAWGIG  182 (442)
Q Consensus       112 r~~-~~~~~~~~~i~~~~~~~a~------~~~~l~~~r~l~G~~~g~~~-~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g  182 (442)
                      +|. ++++.+..++.+.++-.++      +....++...+.+++..... |-.++.+|.++ ++||.+..+.-..+.++|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g  161 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG  161 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence            655 5567788888888887766      34556677788888866654 46888888875 689999999999999999


Q ss_pred             HHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCCCCCCccchhhhhhhhhhh
Q 013453          183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESAS  261 (442)
Q Consensus       183 ~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (442)
                      ..+...+...+....++.+.         ..+|+....+.++++++.. .+++-.+|.+.+....+++.           
T Consensus       162 ~~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~-----------  221 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV-----------  221 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------
Confidence            88777777676653322111         3356665566666665554 34455666554222111100           


Q ss_pred             hhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHh
Q 013453          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (442)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (442)
                            +.+.......+++||++...++...+.........+....|....     +|.+.............+.+++.+
T Consensus       222 ------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~~  290 (467)
T COG2211         222 ------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGLI  290 (467)
T ss_pred             ------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHHH
Confidence                  111122344678999998888877666666555555555444322     566666666666665555555555


Q ss_pred             hHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccC-------Ch
Q 013453          342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-------DQ  414 (442)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  414 (442)
                       ....+.+++|+|++..++.++.+++..++.+.+    .......++..+..+.......+..+++++|..       ..
T Consensus       291 -~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~  365 (467)
T COG2211         291 -LWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGV  365 (467)
T ss_pred             -hHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCC
Confidence             888899999999999999999888888877765    122333344434444555666777888888866       34


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          415 DQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       415 ~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +.-|...|...++.-+|.+++..+.|+
T Consensus       366 R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         366 RREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            566888999999999999998877664

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=2.5e-17  Score=146.02  Aligned_cols=354  Identities=11%  Similarity=0.066  Sum_probs=223.0

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      ...+..+.+.+....+.+.......-++ +.+.      .-|+.-+|++.+....+++-|+.|++|-|...+++..+.++
T Consensus        49 ~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~i  121 (480)
T KOG2563|consen   49 AFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGI  121 (480)
T ss_pred             HHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHH
Confidence            3334444444444555566666666677 6666      88999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc------hHH--HHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          125 FNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       125 ~~~~~~~a~------~~~--~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++.+-..+.      .++  ..+.+..+.+.++-..... .....-|++++||..+..+-.++..+|.++|.++...+..
T Consensus       122 Ga~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  122 GAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             HHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            998876653      334  5556666666665555554 3455669999999999999999999999999999999987


Q ss_pred             ccccCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccc
Q 013453          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (442)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (442)
                      ...+. ....|.       ....+.....++.+.+. ..+..+|.|+......+..+.               +.+..++
T Consensus       202 ~~~~~-~~~~~~-------~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~s  258 (480)
T KOG2563|consen  202 SSKDS-EDNSWL-------FFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKS  258 (480)
T ss_pred             CCCCc-chhHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHH
Confidence            44211 111111       11122323333322222 223334433332221111100               1123456


Q ss_pred             cccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchh
Q 013453          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (442)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (442)
                      .++.++|+++....+.+..-...+.+..+.+-.    ...  --|++...+|+......+++++++.+.+.+.||+.+-|
T Consensus       259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~----~l~--~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk  332 (480)
T KOG2563|consen  259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNL----ALC--PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK  332 (480)
T ss_pred             HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhh----ccc--cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            788999999988777776655544444333221    111  13556677888888888999999996666666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhh
Q 013453          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (442)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (442)
                      ...++......++...+.....  .....+.++......+.+..+..|...-+..|..-|..-++..|+.+..+++-+.+
T Consensus       333 ~~~~v~~~~~~v~~~~l~~~t~--~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~  410 (480)
T KOG2563|consen  333 LTTLVLYLFALVGTLMLLTCTL--FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI  410 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc--cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH
Confidence            5666655555555322222222  22233334444445556667777888888888776667777888887777766554


Q ss_pred             hc
Q 013453          435 GP  436 (442)
Q Consensus       435 gp  436 (442)
                      -.
T Consensus       411 ~~  412 (480)
T KOG2563|consen  411 LV  412 (480)
T ss_pred             HH
Confidence            43

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.76  E-value=1.1e-15  Score=135.48  Aligned_cols=329  Identities=16%  Similarity=0.063  Sum_probs=216.8

Q ss_pred             HHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC-----CchhhHH-HHHHHHHHHHHHhcc-----c--
Q 013453           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIM-GTASVVIFNTLFGLS-----V--  133 (442)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~a-----~--  133 (442)
                      +..|++++..-      .+.+.+...+.. ...+.+|+.+|+.+     ||..+++ +..+...+..+.+++     .  
T Consensus         6 MIvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~   78 (403)
T PF03209_consen    6 MIVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG   78 (403)
T ss_pred             HHHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            45677777766      888888887775 46899999999999     8877665 566665555555442     2  


Q ss_pred             ------h-HH--HHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCc
Q 013453          134 ------N-FW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (442)
Q Consensus       134 ------~-~~--~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (442)
                            . .+  ...+...+.|+|.+...+. .++++|..|+|+|+++.++...+.-+|.+++..+.+.+.+..      
T Consensus        79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~------  152 (403)
T PF03209_consen   79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF------  152 (403)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc------
Confidence                  2 12  2344557778887777774 999999999999999999999999999999999999998721      


Q ss_pred             ccccccccCCcChhHHHHHHHH--HHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccccc
Q 013453          204 FSSESLFGKFPYFLPCLCISLF--AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (442)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (442)
                               ..-|..-.+....  .+..-+...+-.|++.....+.++++                +......++++..+
T Consensus       153 ---------s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~~  207 (403)
T PF03209_consen  153 ---------SPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWAS  207 (403)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHhC
Confidence                     1122222222222  22222222333444433222111000                11122345666777


Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                      |+.....+..++....++.-     -...+|+--+-+|++..+...+....+.+.+++-...+.++.++.++++...+++
T Consensus       208 ~~a~~f~~fl~l~t~a~~~Q-----D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~  282 (403)
T PF03209_consen  208 PQARRFFVFLFLGTLAFFMQ-----DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGC  282 (403)
T ss_pred             CChhHHHHHHHHHHHHHHhh-----HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            77766655555544333322     3334566666799999999999999999999998877777788888999998999


Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      ..+.+++.++.......+  .+..-.. .+..++..........+..-+..++++.|..+|.....+.++..+|..++|.
T Consensus       283 ~~~~~~f~lii~a~~~~~--~~~~~~~-~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~  359 (403)
T PF03209_consen  283 LLGALAFALIILAGPLGS--PWLFRPG-VFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA  359 (403)
T ss_pred             HHHHHHHHHHHHHHhccc--chHHHHH-HHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887766654432  2222222 2223333333334445555566778899999999999999888888776653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.76  E-value=5.8e-20  Score=174.53  Aligned_cols=386  Identities=16%  Similarity=0.191  Sum_probs=3.0

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .+++..+...+..+.....+..+.++|+++..+      .|++.+.+-++..+..++..++.+|..|-|.+-++.++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            445555666666677778889999999999999      99999999999999999999999998888889999999999


Q ss_pred             HHHHHhccc--------------------------------------------------hHHHHHHHHHHHHhhcchhhH
Q 013453          125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP  154 (442)
Q Consensus       125 ~~~~~~~a~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~  154 (442)
                      +++++++-+                                                  -+..++++.++.|+|....++
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            999876510                                                  125578889999999999999


Q ss_pred             H-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCC-------cccccccccCCcChhHHHHHHHHH
Q 013453          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-------LFSSESLFGKFPYFLPCLCISLFA  226 (442)
Q Consensus       155 ~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~~~  226 (442)
                      . .+|+-|..++++-+..+|+..+...+|.++|-++++.+.....+++.       .-..+..| -..||.-+++.+.+.
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~  239 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence            4 99999999999999999999999999999999999988764322111       11112223 456888888888888


Q ss_pred             HHHHHHHhhccccCCCCCCCCccchhhh---hhh-hhhhhhhh------hhhcccccccccccccchhHHHHHHHHHHHH
Q 013453          227 FGVTIAAFWLPETLHRHNDDDDSCDVSY---DAL-ESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (442)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (442)
                      ++..+.++++|+..+..++.+++.+..+   ++. ++..++++      +..++-....+++++||.+....+...+...
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            8777777777765443311111110000   000 00000110      1123345667889999999999999988888


Q ss_pred             HHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc--hhHHHHHHHHHHHHHHHH---H
Q 013453          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS---Y  371 (442)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~  371 (442)
                      ...++.++.|-|++.     +++.++.+++++.....+.....+.++++++.||++  .|..+....+...+..+.   .
T Consensus       320 ~~~G~~tF~pKylE~-----QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~  394 (539)
T PF03137_consen  320 IVSGFATFLPKYLES-----QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPL  394 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHH-----HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887764     488999999988877777665555668888887764  344444443333333222   1


Q ss_pred             HH--HHH---------h----------------------------h-----c-hhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 013453          372 PY--IAM---------L----------------------------S-----G-FGLAFLLNCASVVKNLLSVSIITGLFI  406 (442)
Q Consensus       372 ~~--~~~---------~----------------------------~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (442)
                      .+  .+.         .                            .     + ......+.+..++..+...........
T Consensus       395 ~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~  474 (539)
T PF03137_consen  395 FFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL  474 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe
Confidence            00  000         0                            0     0 011222222222222222233333344


Q ss_pred             hhcccCChhhhhHHHHHHHHHHH-HHHhhhcccCCCC
Q 013453          407 LQNRAVDQDQRGAANGIAMTGMS-LFKAAGPAGGGAL  442 (442)
Q Consensus       407 ~~~~~~~~~~~g~~~g~~~~~~~-~g~~~gp~i~G~l  442 (442)
                      ..-+.+|+++|+.+.|+...+.. +|.+-||++.|++
T Consensus       475 i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~i  511 (539)
T PF03137_consen  475 ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAI  511 (539)
T ss_dssp             -------------------------------------
T ss_pred             eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHH
Confidence            45567899999999999987755 7889999999874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.73  E-value=1.1e-15  Score=135.05  Aligned_cols=334  Identities=11%  Similarity=-0.020  Sum_probs=222.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH-HHHHHHHHHHHHhccch--HH-HHHHHHHHHHhhcchhhH-H
Q 013453           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIFNTLFGLSVN--FW-MAVLTRFLLGSLNGLLGP-I  155 (442)
Q Consensus        81 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~i~~~~~~~a~~--~~-~l~~~r~l~G~~~g~~~~-~  155 (442)
                      ..+.+...++..+..++.+|+.|.++|+.|+||..+. ...+..+..++..++++  ++ ..++.-.+..++.....+ -
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3448889999999999999999999999997766554 44555555666666554  44 444555677777666666 4


Q ss_pred             HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc--cccccCC-CcccccccccCCcChhHHHHHHHHHHHHHH-
Q 013453          156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA--QPAEKYP-NLFSSESLFGKFPYFLPCLCISLFAFGVTI-  231 (442)
Q Consensus       156 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~~~~~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-  231 (442)
                      .+++.+..++++-++..++-.....+|+.+.-++.-...  ....+.+ ..++-...- ...-|..+.+.++.-++..+ 
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhH
Confidence            999999999998888888777777777776655542221  1100000 011111111 33455555666665555433 


Q ss_pred             HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcC
Q 013453          232 AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS  311 (442)
Q Consensus       232 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (442)
                      .++..++.++.....++......+              +-..+.+++.+++++...++..+++.-...+....-..|.. 
T Consensus       216 m~~~v~~~~~~~~~~~~~l~~g~k--------------~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~-  280 (438)
T COG2270         216 MILNVHDAEKISSPPPTALRNGFK--------------ELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGA-  280 (438)
T ss_pred             HHhcccccccccccchHHHHHHHH--------------HHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence            444455544321011110011101              11234566677778888888888877666666666665554 


Q ss_pred             CcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013453          312 PKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASV  391 (442)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (442)
                          ..+|++..+...+.....+..+++++ +.+++++|++.|+++..+.++..+..+...+...  +..    ..+.++
T Consensus       281 ----~~~gls~~~lll~g~~~~vvA~lg~i-i~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~~~----f~i~gl  349 (438)
T COG2270         281 ----ADLGLSSTELLLIGIALSVVAALGAI-IAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--ELD----FWILGL  349 (438)
T ss_pred             ----HHcCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--cHH----HHHHHH
Confidence                23799999999999999999999998 7779999999998888877776666555444322  112    333344


Q ss_pred             HHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          392 VKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +.+.+..+.+....++..+.+|+++-++.+|+++..+..++.+||.+.+.
T Consensus       350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence            44456667788899999999999999999999999999999999987653

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.67  E-value=5.9e-14  Score=122.64  Aligned_cols=272  Identities=15%  Similarity=0.116  Sum_probs=173.8

Q ss_pred             HHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHH
Q 013453           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (442)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  129 (442)
                      ..+...+.....|....+.+++|.++.|      ++.+....+....+..++.|.++||+|||+.-+..+++.+++++. 
T Consensus        43 Y~La~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-  115 (354)
T PF05631_consen   43 YLLAMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-  115 (354)
T ss_pred             HHHHHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-
Confidence            3334445566678887777899999999      999999999999999999999999999999999999999998864 


Q ss_pred             hccchHHHHHHHHHHHHhhcchhhHH-HH-Hhhhhcccc----chhhhhhhhh-HhhhhHHHHHHHhhhhhccccccCCC
Q 013453          130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KA-YACEIFREE----HQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPN  202 (442)
Q Consensus       130 ~~a~~~~~l~~~r~l~G~~~g~~~~~-~~-~i~~~~~~~----~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (442)
                      -..++++.++++|++.|++......+ .+ ++.|.-..+    ..+..++... ...++-.+.+.+++.++.+.      
T Consensus       116 k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~------  189 (354)
T PF05631_consen  116 KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW------  189 (354)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH------
Confidence            45688999999999999999988775 44 566653322    2233333222 23334445555666666651      


Q ss_pred             cccccccccCCcChhHHHHHHHHHHHHHHHH-hhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccccc
Q 013453          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (442)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (442)
                       .       ..+-..||.....+.++..+.+ ..-+|......++.+..+.                  .....+.+++|
T Consensus       190 -~-------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~------------------~~~a~~~i~~d  243 (354)
T PF05631_consen  190 -F-------GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGS------------------FREAWRAILSD  243 (354)
T ss_pred             -h-------CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHH------------------HHHHHHHHHcC
Confidence             1       1222455566655555554433 3345654432221111111                  11234567788


Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                      |+++.+.++..++-...+.+     .++..|.... .+ ...-.|++++.+-++.++|+.+......++......+....
T Consensus       244 ~ril~LG~~qslFE~smy~F-----VflWtPaL~~-~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~  316 (354)
T PF05631_consen  244 PRILLLGLIQSLFEGSMYLF-----VFLWTPALDP-DD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVF  316 (354)
T ss_pred             chhHHHHHHHHHHHHHHHHh-----eeeeeceecC-CC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99988888877766655444     3333343331 11 12347899999999999999855566666645444444444


Q ss_pred             HHHHHH
Q 013453          362 VLTIPL  367 (442)
Q Consensus       362 ~~~~~~  367 (442)
                      .+..++
T Consensus       317 ~~aa~~  322 (354)
T PF05631_consen  317 AVAAVS  322 (354)
T ss_pred             HHHHHH
Confidence            443333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=1.5e-15  Score=144.40  Aligned_cols=313  Identities=16%  Similarity=0.195  Sum_probs=235.8

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .+.+..+...+....+...+..+.+.|+++.++      .|++.+.+-++..+...+..+..-|.-|-+.+-++.+++++
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            455666777777777788889999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc--------------------c-----------------------------h--HH-HHHHHHHHHHhhcchh
Q 013453          125 FNTLFGLS--------------------V-----------------------------N--FW-MAVLTRFLLGSLNGLL  152 (442)
Q Consensus       125 ~~~~~~~a--------------------~-----------------------------~--~~-~l~~~r~l~G~~~g~~  152 (442)
                      +++++++-                    +                             +  ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99998762                    0                             0  22 5677889999999999


Q ss_pred             hHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccC-CC--cc-cccccccCCcChhHHHHHHHHHH
Q 013453          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PN--LF-SSESLFGKFPYFLPCLCISLFAF  227 (442)
Q Consensus       153 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~-~~--~~-gw~~~~~~~~~~~~~~~~~~~~~  227 (442)
                      .+. .+|+-|...+++-...+|+......+|.++|-++++++...-... ..  .. .-+.-| -..||.-|++.+.+.+
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALLL  333 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHHH
Confidence            994 999999999999999999999999999999999999987643222 10  11 111223 5578999999999999


Q ss_pred             HHHHHHhhccccCCCCCCCCccchhhhhhhhhh-hhhh---hhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHH
Q 013453          228 GVTIAAFWLPETLHRHNDDDDSCDVSYDALESA-SAEV---KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  303 (442)
Q Consensus       228 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (442)
                      +..+.++++|...+...++++..+....+.++. .+++   .+.-++-+...+++++||.+...++...+......++.+
T Consensus       334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t  413 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT  413 (735)
T ss_pred             HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence            888888888876554332211111100011100 0000   111123356678899999999999999999999999999


Q ss_pred             HHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc--hhHHHHHHHHHHHHHHH
Q 013453          304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLT  369 (442)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  369 (442)
                      +.|-|+.+.     ++.++..+..++...++.....+.++++++.+|++  .|....+.++...+.++
T Consensus       414 FlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~  476 (735)
T KOG3626|consen  414 FLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL  476 (735)
T ss_pred             hhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence            999988744     89999999999988888888888889999988764  44444444444444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.65  E-value=1.1e-14  Score=139.78  Aligned_cols=174  Identities=15%  Similarity=0.241  Sum_probs=126.4

Q ss_pred             HHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHH-
Q 013453           51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-  128 (442)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~-  128 (442)
                      +............+|.+. +++|.+..+      .++..+...++..++.++.|+++||+|||+++..+.++..+.... 
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  333 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA  333 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            333344455556677766 567888777      778888889999999999999999999999988877654433322 


Q ss_pred             --HhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCccc
Q 013453          129 --FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (442)
Q Consensus       129 --~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g  205 (442)
                        ...+++...++++|++.|++.+.... ...++.|.+|++.|+++++.......++..++|.+.+++.+.         
T Consensus       334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---------  404 (490)
T PRK10642        334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---------  404 (490)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              22345677888899999987666555 578889999999999999975444556677899999988762         


Q ss_pred             ccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 013453          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (442)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (442)
                            ...|+.++....+.+++..+..+++||+|++..+
T Consensus       405 ------~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        405 ------TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK  438 (490)
T ss_pred             ------hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence                  1224555555666666666666778999887543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.64  E-value=4.4e-15  Score=139.27  Aligned_cols=183  Identities=12%  Similarity=0.131  Sum_probs=131.7

Q ss_pred             HHHhHhcchhhchhHHHHHHHhcccccch--hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHH
Q 013453           50 VLCTALPISSLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (442)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~  127 (442)
                      .++............+.+.++.+.++...  ......+.+.++..++..++.++.|+++||+|||+++..+.++.+++..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~  296 (418)
T TIGR00889       217 SMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG  296 (418)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33333333334455566777777554210  0001179999999999999999999999999999999999999988877


Q ss_pred             HHhccc----hHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhh-HhhhhHHHHHHHhhhhhccccccCC
Q 013453          128 LFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYP  201 (442)
Q Consensus       128 ~~~~a~----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~  201 (442)
                      +.....    +++.+++.+++.|++.+...+. ..++.|++|+++|++++++.+ ...++|..+||.++|.+.+..+.. 
T Consensus       297 l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~-  375 (418)
T TIGR00889       297 FFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY-  375 (418)
T ss_pred             HHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-
Confidence            666532    3466778899999998888774 889999999999999999997 678899999999999999832100 


Q ss_pred             CcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCC
Q 013453          202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHR  242 (442)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~  242 (442)
                      ..         ++|+..+.+.+++.++. ++..+++||+.+.
T Consensus       376 ~~---------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       376 GT---------FDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             cC---------CchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            01         23454446666665555 4455667776443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.64  E-value=6.8e-15  Score=144.49  Aligned_cols=140  Identities=14%  Similarity=0.105  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhc
Q 013453           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF  163 (442)
Q Consensus        85 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~  163 (442)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+...+ ..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4456677789999999999999999999999999999999999999998888888889998887666666 589999999


Q ss_pred             cccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCC
Q 013453          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (442)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (442)
                      |.++|++++|+.++...+|.++||.+++.+.+                . ....++++.+++.++..++..++||+..
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999998875                1 1345666666666666666667788654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.60  E-value=5.2e-14  Score=131.41  Aligned_cols=158  Identities=15%  Similarity=0.182  Sum_probs=124.7

Q ss_pred             hhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHH
Q 013453           58 SSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (442)
Q Consensus        58 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~  136 (442)
                      .......|.+. +++|.++.+      .+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+
T Consensus       233 ~~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (393)
T PRK15011        233 SLYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPA  306 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33444566554 668988888      88888888888888999999999999999988877766665555555677888


Q ss_pred             HHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcC
Q 013453          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (442)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (442)
                      .+++.+++.+++.|...+ ...+..|..|+ +|+++.++.+....+|..++|.++|.+.+                .++|
T Consensus       307 ~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~  369 (393)
T PRK15011        307 ILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNY  369 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hhhh
Confidence            888899998888777666 47778898885 59999999999999999999999999998                4455


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccc
Q 013453          216 FLPCLCISLFAFGVTIAAFWLPE  238 (442)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~e  238 (442)
                      +..+.+.+++.++.++..++.||
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        370 HAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Confidence            55657777777777777776665

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.59  E-value=9.3e-15  Score=115.36  Aligned_cols=135  Identities=33%  Similarity=0.567  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhcccc
Q 013453           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE  166 (442)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~  166 (442)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+....+++++.+.+.+++.|++.+...+ ..+++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            3456778889999999999999999999999999999999888899999999999999999888877 589999999999


Q ss_pred             chhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHH-Hhhccc
Q 013453          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (442)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (442)
                      +|++..+..+....+|..++|.+++.+.+                ..+|+..+.+.+...++..+. .+..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999987                334444446666555555443 333444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.58  E-value=7.3e-14  Score=130.99  Aligned_cols=161  Identities=19%  Similarity=0.173  Sum_probs=128.6

Q ss_pred             cchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH
Q 013453           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (442)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~  135 (442)
                      ........+|.+.++.|.  ++      .++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T PRK05122        231 GFGTIATFITLYYAARGW--DG------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSP  302 (399)
T ss_pred             HHHHHHHHHHHHHHHccc--cc------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH
Confidence            333444555666666655  33      5667788889999999999999999999999999988888888888888888


Q ss_pred             HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCc
Q 013453          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (442)
                      +.+++.+++.|++.+...+ ....+.|.+|+++|+++.++++....+|..++|.+.+.+.+                ..+
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g  366 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WFG  366 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcC
Confidence            8888999999999888777 47788899999999999999999999999999999999987                444


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhccccC
Q 013453          215 YFLPCLCISLFAFGVTIAAFWLPETL  240 (442)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~  240 (442)
                      |+..+.+.+.+.++..+..+.+++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        367 YPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55555777776666665555555543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.57  E-value=6.4e-14  Score=131.71  Aligned_cols=141  Identities=21%  Similarity=0.267  Sum_probs=119.0

Q ss_pred             HHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHH
Q 013453           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (442)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  128 (442)
                      ..+.............|.+.++.|.++.+      .+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++
T Consensus       228 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        228 SYFFTLIVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAA  301 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333333344455678888889999888      999999999999999999999999999999998887777777777


Q ss_pred             HhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          129 FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       129 ~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ..+.++.+.+.+..++.|++.+...+ ..+++.|.+|+++|++..++.+....+|..++|.++|.+.+
T Consensus       302 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        302 LAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            77778888888888888887666666 58899999999999999999999999999999999999987

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.56  E-value=2.2e-14  Score=135.31  Aligned_cols=140  Identities=19%  Similarity=0.161  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~  162 (442)
                      .|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+ ...++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999989999999999999999999998877766 58899999


Q ss_pred             ccccchhhhhhh-hhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhcccc
Q 013453          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPET  239 (442)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~  239 (442)
                      +|++.|+...+. ++....+|.+++|.+.|++.+       .+|         |+..+...+++.++.. +....++++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~-------~~G---------~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD-------SIG---------FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH-------hhC---------chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999887765 677888999999999999998       334         4555566666655544 334444443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.56  E-value=4e-14  Score=131.69  Aligned_cols=144  Identities=13%  Similarity=0.030  Sum_probs=116.9

Q ss_pred             HHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHH
Q 013453           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (442)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~  125 (442)
                      .....+...+.........+.+.++++.++.+      .+++.+.+.++..++.++.|++.||+|||+.+.++.++..++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       210 LYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVG  283 (377)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            33333333333333444556677888888877      899999999999999999999999999999999999988888


Q ss_pred             HHHHhccchH--HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          126 NTLFGLSVNF--WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       126 ~~~~~~a~~~--~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .++..+.++.  ..+++..++.|++.+...+ ...++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       284 MAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8877776643  3345667888888777666 48899999999999999999999999999999999999988

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.56  E-value=1.3e-13  Score=128.30  Aligned_cols=148  Identities=12%  Similarity=0.064  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      ++++...+..++............|.+.+|+|.++.+      .|++.+...++..+..++.+++.||+|+|+.+.++.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~  278 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI  278 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence            3445445555555555666667778888889999998      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhh-HhhhhHHHHHHHhhhhhcc
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~  195 (442)
                      ...+..++.+++++.+.+++.+++.|+..+...+ ...++.+. |+++|++..++++ ...++|..+||.++|++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888 48899988 9999999999876 5788999999999999998

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.54  E-value=2.3e-13  Score=125.20  Aligned_cols=164  Identities=22%  Similarity=0.320  Sum_probs=138.8

Q ss_pred             HHHhHhcchhhchhHHHHHHHh-cccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCch-hhHHHHHHHHHHHH
Q 013453           50 VLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNT  127 (442)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~i~~~  127 (442)
                      .+.............|.+.++. |.++.+      .+++.+...++..++.++.|++.||+|||+ .+..+..+..++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344444555566677777665 888888      999999999999999999999999999999 99999999999999


Q ss_pred             HHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccc
Q 013453          128 LFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (442)
Q Consensus       128 ~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (442)
                      .....++.+.+++..++.|++.+...+ ..+++.|..|+++|++.+++.+....+|..++|.+.+.+.+           
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-----------  326 (352)
T cd06174         258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-----------  326 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            999999999999999999999888888 59999999999999999999999999999999999999998           


Q ss_pred             cccccCCcChhHHHHHHHHHHHHHHHHhh
Q 013453          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (442)
                           ..+|+..+.+.+++.++..+...+
T Consensus       327 -----~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         327 -----TGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             -----ccCcchHHHHHHHHHHHHHHHhee
Confidence                 444555557777776666554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.53  E-value=3.5e-13  Score=125.35  Aligned_cols=155  Identities=14%  Similarity=0.276  Sum_probs=123.0

Q ss_pred             chhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHH
Q 013453           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (442)
Q Consensus        61 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~  139 (442)
                      ....|.+ .+++|.++.+      .+++.+.......++.++.|++.||+|||+++.++.++..+......+.++.+.++
T Consensus       219 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALL  292 (375)
T ss_pred             HhhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344544 4678998888      88888888777888899999999999999999888877766666666677888888


Q ss_pred             HHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhH
Q 013453          140 LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (442)
Q Consensus       140 ~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  218 (442)
                      +.+++.|++.+...+ ...++.|..|+ +|+++.++.+....+|..++|.+++.+.+                ..+|+..
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~~  355 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHAV  355 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchhH
Confidence            899999998887777 47888898875 56799999999999999999999999988                4445555


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 013453          219 CLCISLFAFGVTIAAFWLPE  238 (442)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e  238 (442)
                      +.+.+++.++..+...+++|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       356 YWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHheecC
Confidence            57777776666666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=3.6e-13  Score=126.77  Aligned_cols=161  Identities=17%  Similarity=0.236  Sum_probs=127.0

Q ss_pred             cchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH
Q 013453           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (442)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~  135 (442)
                      ......+..+.+.++.+.+..+  .....+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
T PRK09874        234 ATGSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP  311 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence            3344556667676665433322  12225677777888889999999999999999999999988888888877888888


Q ss_pred             HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCc
Q 013453          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (442)
                      +.+++.+++.|++.+...+ ..+++.+..|+++|++.+++.+....+|..+||.++|.+.+                ..+
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~~g  375 (408)
T PRK09874        312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------NYG  375 (408)
T ss_pred             HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------hcc
Confidence            9999999999999888888 48888899999999999999999999999999999999988                444


Q ss_pred             ChhHHHHHHHHHHHHHHHHh
Q 013453          215 YFLPCLCISLFAFGVTIAAF  234 (442)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~  234 (442)
                      |+..+.+.+++.++..+..+
T Consensus       376 ~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        376 FRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            55555777766666554433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.52  E-value=2.5e-13  Score=128.08  Aligned_cols=161  Identities=17%  Similarity=0.118  Sum_probs=131.5

Q ss_pred             hchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHH
Q 013453           60 LFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (442)
Q Consensus        60 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l  138 (442)
                      .....|.+.++ +|.+..+      .|++.+...++..++.++.+++.||.++|+.+..+.++..++.++..+.++.+..
T Consensus       242 ~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILA  315 (417)
T ss_pred             HHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHH
Confidence            44556777777 8998888      9999999999999999999999999888888888888888888888888888888


Q ss_pred             HHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChh
Q 013453          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (442)
Q Consensus       139 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (442)
                      .+..++.|++.+...+. .+++.|..|++.|++++++++....+|..+||.+.|.+.+                ..+++.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~~  379 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPVA  379 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchhh
Confidence            88899999988877774 7889999999999999999999999999999999999998                334444


Q ss_pred             HHHHHHHHHHH-HHHHHhhccccCCC
Q 013453          218 PCLCISLFAFG-VTIAAFWLPETLHR  242 (442)
Q Consensus       218 ~~~~~~~~~~~-~~~~~~~~~e~~~~  242 (442)
                      .+...+...++ ..+....+||.++.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (417)
T PRK10489        380 SASASGFGLLIIGVLLLLVLGELRRF  405 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccc
Confidence            44555544443 34555666766543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.52  E-value=7.7e-14  Score=132.54  Aligned_cols=148  Identities=17%  Similarity=0.148  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHH--
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM--  117 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~~~~--  117 (442)
                      .++......++...........+|.+.+++|.+..+      .+++.+...++..+++++.|+++||.  ++|+...+  
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  315 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF  315 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH
Confidence            344444445555555555556678888889999888      99999999999999999999999984  33433333  


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.++.+++.++...+++++.+++.+++.|++.+...+ ..+++.|.+|++++++.+++++....+|..+||.++|.+.+
T Consensus       316 ~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       316 ALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            3444455556667788999999999999999888877 48999999999999999999999999999999999999987

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.51  E-value=1.3e-12  Score=122.05  Aligned_cols=177  Identities=12%  Similarity=0.076  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      .+.+.+..++............|.+.+++|.+..+      .|.+.+.+.++..++.++.|++.||+|||+.+..+..+.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            34344444444455555666778888888999888      999999999999999999999999999999999888877


Q ss_pred             HHHHHHHhc-cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhcc-ccchhhhhhhhhHhhhhHHHHHHHhhhhhcccccc
Q 013453          123 VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (442)
Q Consensus       123 ~i~~~~~~~-a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (442)
                      .++.++... .++...+.  -++.|++.+...| ......+..+ +++|++..++.+....++..++|.+.+++.+.   
T Consensus       281 ~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~---  355 (393)
T PRK09705        281 LVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI---  355 (393)
T ss_pred             HHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            777665543 33322222  2466887777666 4666667764 67899999999999999999999999999982   


Q ss_pred             CCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCC
Q 013453          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHR  242 (442)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~  242 (442)
                          .|        +|...+.+.++..++..+ ...+.||++.+
T Consensus       356 ----~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        356 ----SG--------NYLMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             ----hC--------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence                11        244545665555555443 34556666544

>PRK12382 putative transporter; Provisional

Probab=99.50  E-value=7.2e-13  Score=123.94  Aligned_cols=154  Identities=21%  Similarity=0.216  Sum_probs=124.3

Q ss_pred             cchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH
Q 013453           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (442)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~  135 (442)
                      .........|.+.++.+.+  +      .++..+.+.++..+++++.|++.||+||||.+..+..+..++.++..+.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA  302 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence            3334445556666666554  3      5666777888889999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCc
Q 013453          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (442)
                      +.+++..++.|++.+...+ ..+.+.|.+|+++|+++.++.+....+|..++|.+.+.+.+       ..|         
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~-------~~g---------  366 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT-------SFG---------  366 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhC---------
Confidence            8888899999999888777 47888999999999999999999999999999999999998       334         


Q ss_pred             ChhHHHHHHHHHHHHHHHH
Q 013453          215 YFLPCLCISLFAFGVTIAA  233 (442)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~  233 (442)
                      |+..+.+.+.+.++..+..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        367 YPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence            4444466666666554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.50  E-value=8.8e-13  Score=122.73  Aligned_cols=154  Identities=19%  Similarity=0.256  Sum_probs=118.6

Q ss_pred             chhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHH
Q 013453           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (442)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~  136 (442)
                      .......+|.+.++.|.++.+      .+++.+...++..+++++.|++.||+|+|+++..+.....++.+...  + ..
T Consensus       216 ~~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~  286 (381)
T PRK03633        216 LGSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QA  286 (381)
T ss_pred             HHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hH
Confidence            334445678888888888888      89999999999999999999999999999999888888777665443  2 23


Q ss_pred             HHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcC
Q 013453          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (442)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (442)
                      ......++.|++.+...| ..+.+.|..|+++++...+..+...++|..+||.++|++.+       ..         ++
T Consensus       287 ~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~-------~~---------g~  350 (381)
T PRK03633        287 AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ-------NY---------SD  350 (381)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh---------Cc
Confidence            344567788887666667 58888999998888888888888999999999999999998       33         34


Q ss_pred             hhHHHHHHHHHHHHHHHHhh
Q 013453          216 FLPCLCISLFAFGVTIAAFW  235 (442)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~  235 (442)
                      +..+.+.+.+.++..+..++
T Consensus       351 ~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        351 NLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHh
Confidence            44446666666555444433

>TIGR00897 2A0118 polyol permease family

Probab=99.49  E-value=7.1e-13  Score=124.20  Aligned_cols=171  Identities=15%  Similarity=0.239  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhH-HHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~-~~~~~  121 (442)
                      ++...+..++............|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+. .+.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~  297 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVG  297 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            34444444555555555566778888899999888      899999999999999999999999999988764 33333


Q ss_pred             HHHHHHHHh-----ccchHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          122 VVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       122 ~~i~~~~~~-----~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      ..+..+...     ..++.+..++..++.|++.+...+....+.|.. +++|++++|+.+....+|..++|.+++.+.+ 
T Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~-  375 (402)
T TIGR00897       298 CGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG-  375 (402)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            333333322     234677777888899988766666556667764 4689999999999999999999999999998 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (442)
                                     ..+++..+.+.+++.++..+...++
T Consensus       376 ---------------~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       376 ---------------FFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             ---------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence                           4455566677776666665555544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03699 putative transporter; Provisional

Probab=99.48  E-value=1.1e-12  Score=122.64  Aligned_cols=147  Identities=12%  Similarity=0.119  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      .++...+..++.......+....|.+. +++|.+..+      .+++.+.+.++..++.++.|+++||++||+.+.....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~  279 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG  279 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence            344444445554444555566778777 567999988      9999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +..+...+....++.+.+.+..++.|++.+...+ ..++..|..| +++++..+.......+|..++|.+.|++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        280 LALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            7777777777777887777788888987776666 4777777765 456778888888999999999999999998

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=1.8e-12  Score=125.30  Aligned_cols=130  Identities=20%  Similarity=0.246  Sum_probs=104.0

Q ss_pred             hchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc--chHH
Q 013453           60 LFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFW  136 (442)
Q Consensus        60 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a--~~~~  136 (442)
                      ....+|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.++..+..++....  .+.+
T Consensus       294 ~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVW  367 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHH
Confidence            445677777 588999988      9999999999999999999999999999999988877766665544332  3444


Q ss_pred             HHHHHHHHHHh-hcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          137 MAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       137 ~l~~~r~l~G~-~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+.+..++.+. +.+......+++.|.+|+++|++.+++.+....+|..+||.++|.+.+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        368 VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            44455555544 334333357889999999999999999999999999999999999998

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.46  E-value=2e-12  Score=121.09  Aligned_cols=148  Identities=13%  Similarity=0.085  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchh--hH-
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV--II-  116 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~--~~-  116 (442)
                      ++++...+..++............|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+.  .. 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            3445555566666666666667777665 557888888      8999999999999999999999999999961  11 


Q ss_pred             -----HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh
Q 013453          117 -----MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       117 -----~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                           .+.++..+........++.+..+....+.+.+.+ ..+ ..+++.|.+|+++|++..++.+....+|..++|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence                 1111112222222223344544444445455555 555 589999999999999999999999999999999999


Q ss_pred             hhhcc
Q 013453          191 GFLAQ  195 (442)
Q Consensus       191 ~~l~~  195 (442)
                      +.+.+
T Consensus       368 g~l~~  372 (399)
T TIGR00893       368 GAIAA  372 (399)
T ss_pred             hhhcc
Confidence            99998

>PRK03545 putative arabinose transporter; Provisional

Probab=99.44  E-value=3.9e-12  Score=118.80  Aligned_cols=145  Identities=13%  Similarity=0.135  Sum_probs=112.4

Q ss_pred             HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHH-HHHhccchHHHHHHHHH
Q 013453           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWMAVLTRF  143 (442)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~-~~~~~a~~~~~l~~~r~  143 (442)
                      |.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+... +..+..++. .+....++.+.+.+..+
T Consensus       230 ~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~  302 (390)
T PRK03545        230 PFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSI  302 (390)
T ss_pred             HHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            4445557888888      999999999999999999999999999887544 444444443 34455678888888889


Q ss_pred             HHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHH
Q 013453          144 LLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  222 (442)
Q Consensus       144 l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  222 (442)
                      +.|++.+...+ ..+.+.|..| ++|++++++.+....+|..+||+++|.+.+                ..+++..+...
T Consensus       303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~~~~~  365 (390)
T PRK03545        303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSIGYVG  365 (390)
T ss_pred             HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHHHHHH
Confidence            99998766666 4777778766 689999999999999999999999999998                44555555777


Q ss_pred             HHHHHHHHHHH
Q 013453          223 SLFAFGVTIAA  233 (442)
Q Consensus       223 ~~~~~~~~~~~  233 (442)
                      +++.++..+..
T Consensus       366 ~~~~~~~~~~~  376 (390)
T PRK03545        366 AALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHHH
Confidence            76666655443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.44  E-value=8.8e-13  Score=123.43  Aligned_cols=147  Identities=20%  Similarity=0.213  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      ++......+.............|.+. +++|.++.+      .+.+.+...++..++.++.|+++||+|||+.+.....+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            44444445555555555566677776 678888888      89999999999999999999999999999988765544


Q ss_pred             HHHHH--HHHhc--cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhh-hhHhhhhHHHHHHHhhhhhcc
Q 013453          122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLST-VSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       122 ~~i~~--~~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ..+..  +...+  .++.+.+++..++.|++.+...+ ..+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            43333  22222  35677777788888988777766 59999999999999999997 456677899999999999998

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.43  E-value=4.9e-12  Score=117.72  Aligned_cols=146  Identities=15%  Similarity=0.129  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      ++......++............|.+.+|.|.++.+      .|.+.+...++..+..++.|++.||+|+|+.+..+.+..
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            34333434444444444555667777889999888      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhh-HhhhhHHHHHHHhhhhhcc
Q 013453          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       123 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++..++.+.+++.+.+++..++.|++.+...+ ...++.+. +++++++..+..+ ...++|..+||.++|.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        281 VVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888899999999999999999888777 47777776 5666788888775 6667888999999999998

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.43  E-value=4.2e-12  Score=121.40  Aligned_cols=148  Identities=16%  Similarity=0.163  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      .++..++..++...........+|.+. +++|.+..+      .++..+...++..++.+++|+++||+|||+.+.....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~  332 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA  332 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            344455555555555455566677665 668999988      8999999999999999999999999999988776554


Q ss_pred             HHHHHHH--HHhccchHHHHHHHHHHHHhhc-chhhHHHHHhhhhccccchhhhhhhhhHhhhh-HHHHHHHhhhhhcc
Q 013453          121 SVVIFNT--LFGLSVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ  195 (442)
Q Consensus       121 ~~~i~~~--~~~~a~~~~~l~~~r~l~G~~~-g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~  195 (442)
                      +..++..  .....++.+.+.+.+++.|++. +..........|.+|+++|+++.|+.+....+ |..++|.+.|.+.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        333 LALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            4443332  2233456777778888888643 33333356777999999999999999988886 77999999999987

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.39  E-value=1.1e-09  Score=99.03  Aligned_cols=342  Identities=14%  Similarity=0.092  Sum_probs=203.5

Q ss_pred             HHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 013453           65 YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (442)
Q Consensus        65 ~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~  143 (442)
                      |.+.+. .|.+++|-     ..-+.-+..-.+....++...+.|..+.|++++++.+...+...+.-+.++...+-+..+
T Consensus        28 ~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~  102 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF  102 (412)
T ss_pred             HHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence            444443 67777662     345556666777888899999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHH
Q 013453          144 LLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (442)
Q Consensus       144 l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  223 (442)
                      .-|++.+.-..-.+++=...|+++-.++.+...++..+|..++.++|..+....              ...++....+..
T Consensus       103 ~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~--------------~~sy~~L~~isl  168 (412)
T PF01770_consen  103 FYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG--------------GVSYFQLNYISL  168 (412)
T ss_pred             HHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCCHHHHHHHHH
Confidence            999998876666888888889888889999999999999999999999887621              444555555555


Q ss_pred             HHHHHHHHHHhhccccCCC---CCCCCccch---hhhhhhhhhhhhh---hhhhc-----------ccccccccccccch
Q 013453          224 LFAFGVTIAAFWLPETLHR---HNDDDDSCD---VSYDALESASAEV---KEEEG-----------REATPKKSLLKNWP  283 (442)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~---~~~~~~~~~---~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~~~~~~~  283 (442)
                      ....++++..+++|.+++.   ++.++++.+   ...++.++..++.   ++.++           .-.+..++..++|.
T Consensus       169 ~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~  248 (412)
T PF01770_consen  169 ASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR  248 (412)
T ss_pred             HHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch
Confidence            5555556666778876542   111111000   0000000000000   00000           01123445567777


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHH-HHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHH
Q 013453          284 LMSSIIVYCVFSLHDMAYSEIFS-LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (442)
                      ++.-.+...+.........++.. +|-..    ..-+-.....|.+-+...+.+.++.+ ..+.+..+..+...+.++..
T Consensus       249 ll~WSlWWa~atcgy~qv~nYvQ~LW~~v----~~~~~~~vYNG~VeA~~tllgA~~al-~~g~v~~~w~~~~~l~l~~~  323 (412)
T PF01770_consen  249 LLLWSLWWAFATCGYYQVINYVQSLWDTV----PPSDNESVYNGAVEAASTLLGAIAAL-LAGYVKVNWDRWGELALGVF  323 (412)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCCCCCcccchHHHHHHHHHHHHHHH-HHhHhhcchHHHHHHHHHHH
Confidence            65555544444444433333332 23222    11122344456666666666666666 44555444444443333332


Q ss_pred             HH--HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhc
Q 013453          363 LT--IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  436 (442)
Q Consensus       363 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp  436 (442)
                      ..  +..+.++.+..     ..|.......++.. ......+....-++.....+.-|.+.|+++++..+-..+-.
T Consensus       324 S~l~a~~L~lm~~t~-----~Iwv~Y~~yIif~~-~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT  393 (412)
T PF01770_consen  324 SLLQAGLLFLMSFTG-----NIWVCYAGYIIFRS-LYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTILT  393 (412)
T ss_pred             HHHHHHHHHHHHHhh-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence            22  22222222221     23332222222233 33344455555555567778889999998887766555433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.39  E-value=6.2e-09  Score=95.86  Aligned_cols=363  Identities=13%  Similarity=0.102  Sum_probs=204.8

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccc-cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      ..+.++...++...+.-+.....|.+..+...+. -.      .+...-.-.+...+.++..|.+.||..|.++...+++
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~   76 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLV   76 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHH
Confidence            4556778888888888888888888887775432 22      4444445566778888999999999999998877665


Q ss_pred             HHHHHHHHHhc------c--c----hHHH---HHHHHHHHHhhcchhhHH--HHHhhhhc------cccchhhhhhhhhH
Q 013453          121 SVVIFNTLFGL------S--V----NFWM---AVLTRFLLGSLNGLLGPI--KAYACEIF------REEHQALGLSTVST  177 (442)
Q Consensus       121 ~~~i~~~~~~~------a--~----~~~~---l~~~r~l~G~~~g~~~~~--~~~i~~~~------~~~~r~~~~~~~~~  177 (442)
                      .--++..+.+.      .  +    +-+.   +++.-.+.|.-.-....+  .+.=.||.      +++.+.+..+...-
T Consensus        77 ~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRR  156 (432)
T PF06963_consen   77 VQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRR  156 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHH
Confidence            44332222211      1  1    1122   222222222222222222  22223443      34455566666666


Q ss_pred             hhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHH-Hhhc----cccCCCCCCC---Ccc
Q 013453          178 AWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWL----PETLHRHNDD---DDS  249 (442)
Q Consensus       178 ~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~e~~~~~~~~---~~~  249 (442)
                      .--+.-+++|++.|.+.+                ..+......+.+...++.+.. ++++    ...|.-..++   +++
T Consensus       157 IDL~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~  220 (432)
T PF06963_consen  157 IDLFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESE  220 (432)
T ss_pred             HHHHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccc
Confidence            666889999999999987                344444445555555554332 2221    1122111111   111


Q ss_pred             chhhhh------hhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChh
Q 013453          250 CDVSYD------ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ  323 (442)
Q Consensus       250 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (442)
                      .++..+      ......+...+.-++....++..++++.+... +...+.++...++......|+..      .|+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas-~alalLY~TVLsf~~lmt~yl~~------~G~s~~  293 (432)
T PF06963_consen  221 SSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLAS-FALALLYFTVLSFGGLMTAYLKS------QGYSPS  293 (432)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHH-HHHHHHHHHHhcCcHHHHHHHHH------CCCCHH
Confidence            000000      00000001111112234556677777755544 44444444456677777777664      399999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHHH-HHHHHHHH
Q 013453          324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF---GLAFLLNCASV-VKNLLSVS  399 (442)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~  399 (442)
                      ..|.+-+...+.++.+.. +..++.+|+|..+.-.++......++.+....-..++.   ......++.++ ..=.+--+
T Consensus       294 ~igi~R~~gav~Gl~gT~-~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~  372 (432)
T PF06963_consen  294 VIGIFRGLGAVFGLLGTW-VYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWS  372 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988 88889999998887777766555544333222111111   11111222222 11122223


Q ss_pred             HHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhh
Q 013453          400 IITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (442)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (442)
                      .-.....+++|.+|+++||+.+|+.+..+++...+
T Consensus       373 fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  373 FDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             hhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            33456777889999999999999999988876544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.38  E-value=6.8e-12  Score=117.57  Aligned_cols=347  Identities=16%  Similarity=0.188  Sum_probs=197.9

Q ss_pred             chhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc---C--CchhhHHHHHHHHHHHHHHhcc---
Q 013453           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY---G--RKPVIIMGTASVVIFNTLFGLS---  132 (442)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~---G--rr~~~~~~~~~~~i~~~~~~~a---  132 (442)
                      .+..|.+.+++|+++.+      ...+.+...+.. ..-+++|.++|.+   |  ||+-++++.++..++.+..+..   
T Consensus        10 ~~~~~~l~~~l~ls~~~------~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~   82 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQ------LQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS   82 (433)
T ss_pred             HHHHHHHHHHcCCCHHH------HHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            45668889999999999      888888888876 4567899999976   3  4555566777665555555543   


Q ss_pred             -chHHHHHHHHHHHHhhcchhhH-HHHHhhhhcc--ccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccc
Q 013453          133 -VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (442)
Q Consensus       133 -~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~  208 (442)
                       .+.....+.-++..+|...... +-+++.|...  +++|+...+.......+|.+++..++|.+.+       ..+.+.
T Consensus        83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~  155 (433)
T PF03092_consen   83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQG  155 (433)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeE
Confidence             3566666666777788888777 5888888874  3347888888899999999999999999988       344444


Q ss_pred             cccCCcChhHHHHHHHHHHHHHHH-HhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHH
Q 013453          209 LFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (442)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (442)
                      .+         .+.+.+..+..+. .+..+| ++..+.. +..... ++.   .+......++.....++.++.+.++..
T Consensus       156 ~f---------~i~~~~~~l~~~~~~~~~~e-~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~l~~~~~~~~i~~~  220 (433)
T PF03092_consen  156 VF---------LISAALPLLMLIVALFLLEE-RKVRPAD-EVFSFG-KEE---VPCLFGSFREQLSELWRALQQRAIWQP  220 (433)
T ss_pred             Ee---------hHHHHHHHHHHHHHHHhhhh-ccccccc-hhhccc-ccc---cchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence            43         5555555554443 444444 2111110 000000 000   000000011122344566777777766


Q ss_pred             HH-HHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHH
Q 013453          288 II-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (442)
Q Consensus       288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (442)
                      .+ ..+++......... ...|...... .+.++++...+.+..+..++.+++..+...++.++ .-|++.....++..+
T Consensus       221 ~~~~~~~~~~~~~~~~a-~~fy~~~~~~-~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~  297 (433)
T PF03092_consen  221 ILFFIFFFNLPPSISSA-SSFYFQTDAL-GGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVL  297 (433)
T ss_pred             HHHHHHHHHhccCCCCc-cEEEEEeccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            66 33222221111111 0112221111 13458999999988777778888777444444443 555555555444433


Q ss_pred             HHHHHH-HHHHhh---c-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          367 LLTSYP-YIAMLS---G-FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       367 ~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      ..+.-. .....+   + +..+. ...-..+....+....-....+.+|..|+..-|+..++..++.++|..++..++.
T Consensus       298 ~~l~~~~lv~~~n~~~Gi~d~~f-~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~  375 (433)
T PF03092_consen  298 ASLFDLLLVTRWNLDLGIPDQWF-ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGA  375 (433)
T ss_pred             HhcccEEEEEEEeeeeCcCCeEE-EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322110 000000   0 00111 1111122222222333344566788899999999999999999999988776543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09952 shikimate transporter; Provisional

Probab=99.38  E-value=2.7e-11  Score=114.77  Aligned_cols=166  Identities=15%  Similarity=0.145  Sum_probs=115.1

Q ss_pred             hHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhc
Q 013453           53 TALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (442)
Q Consensus        53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~  131 (442)
                      ............|.+ .+++|.+...      ...+.....+...++.++.|+++||+|||++++.+.++..++.+....
T Consensus       262 ~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~  335 (438)
T PRK09952        262 ELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFM  335 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555 4567877765      555666667777888999999999999999998887766554433322


Q ss_pred             ---c-chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhh-HhhhhHHHHHHHhhhhhccccccCCCccc
Q 013453          132 ---S-VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (442)
Q Consensus       132 ---a-~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~g  205 (442)
                         . ++.+.+++..++.+++.+...+ ..++++|.+|++.|+.+.++.+ .+..+|..++|.+.+++.+..        
T Consensus       336 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~--------  407 (438)
T PRK09952        336 ALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF--------  407 (438)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence               2 2344445556677787777666 5899999999999998888754 445589999999999998721        


Q ss_pred             ccccccCCcChhHHHHHHHHHHHHHHHHhhccc
Q 013453          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (442)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (442)
                            ..+|+.++...+++.++..+..+.++|
T Consensus       408 ------~~~~~~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        408 ------GGSWHSVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             ------CCCchHHHHHHHHHHHHHHHHHHHccc
Confidence                  123555666676677766666666665

>TIGR00895 2A0115 benzoate transport

Probab=99.38  E-value=5e-12  Score=118.55  Aligned_cols=143  Identities=20%  Similarity=0.274  Sum_probs=113.5

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .++...+.............|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+....+....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       254 LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            334444444445555566678888899999888      99999999999999999999999999999555444443333


Q ss_pred             HHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      ..++....++.+.+++..++.|++.+...+ ..+++.|.+|+++|++++++......+|..+||.++|++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       328 AVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            333333356777788888999999888777 589999999999999999999999999999999999876

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.37  E-value=2.8e-11  Score=113.99  Aligned_cols=179  Identities=13%  Similarity=0.169  Sum_probs=141.3

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCc--hhhHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIM  117 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~~~~  117 (442)
                      +.+....++.++..-+.+.+......+. +++|.+..+      ...+.-+..+...+|++++|++.||+|.|  ++++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI  354 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3344445555555445555555555554 589999999      88888999999999999999999999999  89999


Q ss_pred             HHHHHHHHHHHHhc--------cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHH
Q 013453          118 GTASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (442)
Q Consensus       118 ~~~~~~i~~~~~~~--------a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (442)
                      +++++.+..+...+        .++.+.+.+.-++.|+..|...+ ..++.+|..|+++.+..+|++....-..+.+||+
T Consensus       355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl  434 (477)
T PF11700_consen  355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL  434 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            88888666666555        67888899999999999999888 5999999999999999999999999999999999


Q ss_pred             hhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccC
Q 013453          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  240 (442)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  240 (442)
                      +-+.+.+..+               ..|..+....++.++.+++++++++++
T Consensus       435 l~g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  435 LFGLITDATG---------------SQRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhccchh
Confidence            9999998321               244555666666666666666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.37  E-value=1.5e-11  Score=118.25  Aligned_cols=172  Identities=17%  Similarity=0.172  Sum_probs=123.3

Q ss_pred             HHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHH
Q 013453           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  126 (442)
                      .+..+.............|.+.+++|.+..+      .++......++..++.++.|+++||+|||+.+.++.++..++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3334444444445556678888899999877      8899999999999999999999999999999999988887777


Q ss_pred             HHHhc-----cc------hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          127 TLFGL-----SV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       127 ~~~~~-----a~------~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                      ++.++     .+      +...+....++.+.......+ ...++.|.+|+++|++++++.+....+|.+++|.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66652     11      222333333333332223335 4778899999999999999999999999999999999998


Q ss_pred             cccccCCCcccccccccCCcChhHHHHHHHHHHHHHHH-HhhccccC
Q 013453          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (442)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (442)
                      +       ..||+..|         .+.++++++..+. .++.||++
T Consensus       444 ~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       444 E-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             H-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence            7       44554444         5566665555443 44556644

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.37  E-value=1.1e-11  Score=117.97  Aligned_cols=170  Identities=14%  Similarity=0.067  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhH-HH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII-MG  118 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~~~-~~  118 (442)
                      ++...+..++...........+|.+.++ .|.+..+      .++....+.++..++.++.|+++||+  +||+... ..
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~  328 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  328 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence            4444444444444445556677877765 6888888      88999999999999999999999999  5554332 22


Q ss_pred             HHHHHHHHHHHhc--cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHH-HHHHhhhhhc
Q 013453          119 TASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLA  194 (442)
Q Consensus       119 ~~~~~i~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~  194 (442)
                      ..+..++.+...+  ..+.+...+..++.|.+...... ...+..|.+|+++|+++.|+.+....+|.. .+|.+.+.+.
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            2333333332222  33444444554555553222222 345678999999999999999988888765 5899999999


Q ss_pred             cccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHh
Q 013453          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (442)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (442)
                      +       .+|         |+..+.+.+..+++.++...
T Consensus       409 ~-------~~g---------~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        409 D-------FFG---------WDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             H-------Hhc---------chHHHHHHHHHHHHHHHHHH
Confidence            8       333         44444666666665544433

>PRK10504 putative transporter; Provisional

Probab=99.36  E-value=1.8e-11  Score=117.49  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHH-HhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      .+.......++............|.+.+ .+|.++.+      .+++.....++..++.++.|++.||+|||+++..+..
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~  335 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTL  335 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3444444555555555555556677766 47888877      8999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhcc---chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       121 ~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +..+...+..+.   ++.+.+.+..++.|++.+...+ ...++.+..|+++|+.+.++.+....+|..+|+.+++.+.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        336 GLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777666553   3444455667788888887766 58888999999999999999999999999999999999887

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.36  E-value=5e-12  Score=117.04  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=115.7

Q ss_pred             hhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccch-HHHHH
Q 013453           62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV  139 (442)
Q Consensus        62 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~-~~~l~  139 (442)
                      ...|.+.++ +|.+..+      .+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            566777765 8988888      999999999999999999999999999999999888888888888877774 88888


Q ss_pred             HHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          140 LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       140 ~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +..++.|++.+...+ ..+++.|..|+++|++..++.+....+|..++|.++|.+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888887 48999999999999999999999999999999999999987

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.36  E-value=2.7e-11  Score=114.64  Aligned_cols=169  Identities=13%  Similarity=0.044  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhh-HH-
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-IM-  117 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~~-~~-  117 (442)
                      ++.+.+..+............+|.+. +++|.+..+      .+...+.+.++..++.++.|+++||+  ++|+.. .. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            34444444444444445556667776 568999888      89999999999999999999999998  333332 22 


Q ss_pred             --HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhh-HHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          118 --GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       118 --~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                        +.....+...... ..+.....+..+..|++..... .....+.|.+|+++|++++|+.+....+|..++|.+.+++.
T Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        319 AAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence              1121211112222 2333344444444554322222 23456789999999999999999999999999999999999


Q ss_pred             cccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHh
Q 013453          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (442)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (442)
                      +                ..+|...+...++++++..+...
T Consensus       398 ~----------------~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        398 E----------------IWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             H----------------hcccHHHHHHHHHHHHHHHHHHH
Confidence            8                33445555666666665544333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.35  E-value=1.3e-11  Score=116.81  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=99.6

Q ss_pred             hchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHH
Q 013453           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (442)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~  139 (442)
                      +...+|.+.++.|.+..+      .+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....
T Consensus       250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL  323 (426)
T ss_pred             HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            445678888888888877      89999999999999999999999999999999988877766655444332211122


Q ss_pred             HHHHHHHh--hcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       140 ~~r~l~G~--~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.-++.|+  +.....+ ...++.|.+|+++|++++|+......+|..++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            22233333  2222233 46788999999999999999999999999999999999987

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.35  E-value=4.3e-11  Score=113.96  Aligned_cols=136  Identities=18%  Similarity=0.271  Sum_probs=121.8

Q ss_pred             HhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc
Q 013453           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (442)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a  132 (442)
                      .+....+...+|.+. +++|.+...      .|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..+++
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            333344455678776 568888888      9999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          133 VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++.+..++.-++.|++.....+ ..+.+.+..|++.|||.++++++....+..+|..+.|.+.+
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998777766 58899999999999999999999999999999999999998

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.34  E-value=5.1e-11  Score=106.94  Aligned_cols=172  Identities=15%  Similarity=0.150  Sum_probs=131.3

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      ++.++......++...+......++ |.+.+..|.+.+.      ++++.-+|.++..++.++.|+++|| +.|+.+...
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~  282 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAA  282 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHH
Confidence            3445555555666555555555554 7777788999999      9999999999999999999999999 999999988


Q ss_pred             HHHHHHHHHHHhc-cchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          119 TASVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       119 ~~~~~i~~~~~~~-a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      ..+..+..+...+ .++.+..++.-++.|+..+..... ...+++ ..+|.+..+.++.....++|..+|..+||.+.+ 
T Consensus       283 ~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~-  360 (394)
T COG2814         283 LLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD-  360 (394)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            7777777766655 455666666667766665554443 555666 456889999999999999999999999999999 


Q ss_pred             cccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhh
Q 013453          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (442)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (442)
                                     ++++....+..+++.+..+...+.
T Consensus       361 ---------------~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         361 ---------------ALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             ---------------hhchHHHHHHHHHHHHHHHHHHHH
Confidence                           556666667777777776655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=1.1e-11  Score=116.57  Aligned_cols=130  Identities=18%  Similarity=0.238  Sum_probs=105.6

Q ss_pred             hchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHH-HHHhccchHHH
Q 013453           60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWM  137 (442)
Q Consensus        60 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~-~~~~~a~~~~~  137 (442)
                      .....|.+ .+++|.+..+      .+++.+...++..++.++.|++.||+|||+.+..+.++..+.. ......++.+.
T Consensus       257 ~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV  330 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHH
Confidence            33445544 4578999888      9999999999999999999999999999999988877653333 23344566777


Q ss_pred             HHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          138 AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       138 l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.+..++.|+..+...+ ..+++.|.+|+++|++++|+.+....+|..++|++.|.+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777776555445 58899999999999999999999999999999999999998

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.33  E-value=2.7e-11  Score=113.38  Aligned_cols=131  Identities=16%  Similarity=0.097  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~  162 (442)
                      .|.+.+...+...++.++.|++.||+|||+.+.++.++.++...+...+++.+.+++.+++.|++...... ...+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78889999999999999999999999999999999999988888878889999999999999998766554 46677888


Q ss_pred             ccccchhhhhhh-hhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHH
Q 013453          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (442)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (442)
                      .+++.++...+. .+....+|..++|.++|++.+                ..+|+..+.+.+++.++..
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~----------------~~G~~~~f~~~~~~~~i~~  388 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD----------------SIGFQGAYLVLGCIVLLFT  388 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH----------------hcccHHHHHHHHHHHHHHH
Confidence            888888877766 678899999999999999998                4455555566666655543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.33  E-value=2e-11  Score=117.74  Aligned_cols=178  Identities=14%  Similarity=0.028  Sum_probs=108.2

Q ss_pred             hhhchhHHHHHHHhcccccchhhh-----hHHHH-HHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhc
Q 013453           58 SSLFPFLYFMIKDFQIAKREEDIG-----SYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (442)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~-~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~  131 (442)
                      +......|.+.++.|.+..+....     ..... ......++..++.++.++++||+|||++++++..+.+++..+.++
T Consensus       305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            334445688888888875431100     00011 233445566778889999999999999998888877777665554


Q ss_pred             cc----hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccc
Q 013453          132 SV----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (442)
Q Consensus       132 a~----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (442)
                      ..    +...+...-+...++.....+ ...+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+..+..   .|+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~  461 (502)
T TIGR00887       385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT---KGY  461 (502)
T ss_pred             HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccc---ccc
Confidence            32    111111111111122112233 4677899999999999999999999999999999999988621100   000


Q ss_pred             cccccCCcChhHHHHHHHHHHHHHHHHhhccccCC
Q 013453          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (442)
                      ..   ..++...+.+.++..++..+..+++||++.
T Consensus       462 ~~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       462 PT---GIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             cc---cccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence            00   112333445555555555555567788764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10054 putative transporter; Provisional

Probab=99.28  E-value=6e-11  Score=110.77  Aligned_cols=111  Identities=16%  Similarity=0.033  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHhhcchhhHH-HHHhhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~  161 (442)
                      .+++.+.+.+.....+++.|++.||+++|+.+..+..+..++.....++ ++.+.+++..++.|+|.+...|. .+++.+
T Consensus       246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~  325 (395)
T PRK10054        246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH  325 (395)
T ss_pred             HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7888888888888888999999999999999999988888888777764 57777778889999998888885 889999


Q ss_pred             hccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ..|++.|++.++..+ ...+|..+||.++|.+.+
T Consensus       326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999988655 555899999999999998

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.28  E-value=1.2e-09  Score=104.69  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=115.8

Q ss_pred             HHHHHHhcccccchhhhhHHHHHHH-HHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHH---hcc-chHHHHH
Q 013453           65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (442)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~g~~~s-~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~a-~~~~~l~  139 (442)
                      |.+.+++|.+..+      .+++.. ...++..++.++.|+++||+|+|+.+.++.++..+..+..   +.. ++.+.+.
T Consensus       247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4446778999998      999874 5668999999999999999999998877666555544322   233 4555555


Q ss_pred             HHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhH
Q 013453          140 LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (442)
Q Consensus       140 ~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  218 (442)
                      +.-+++.++.|...+ ..++..+..+++.+++..++.+...++|..+++.+.|.+.+                ..+|+..
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------------~~G~~~~  384 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----------------AHGWPTF  384 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhChHHH
Confidence            566666666665555 48888999999999999999999999999999999999998                3445555


Q ss_pred             HHHHHHHHHHHHHHHhhcccc
Q 013453          219 CLCISLFAFGVTIAAFWLPET  239 (442)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e~  239 (442)
                      +.+.+++++...+....++++
T Consensus       385 f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        385 YLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            577777777776666666654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.28  E-value=6.6e-11  Score=110.56  Aligned_cols=160  Identities=16%  Similarity=0.137  Sum_probs=113.3

Q ss_pred             HHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHH-HHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHH
Q 013453           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (442)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  128 (442)
                      .++............+.+.+|.|.++++      .|++..... ....++.++.|++.||+|+|+.+..+..+.++..+.
T Consensus       217 ~~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~  290 (390)
T TIGR02718       217 ALLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL  290 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3344443444445566777889999998      999988876 466677899999999999999998877665333322


Q ss_pred             Hhc------cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccc-cchhhhhhhhhHhhhhHHHHHHHhhhhhccccccC
Q 013453          129 FGL------SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (442)
Q Consensus       129 ~~~------a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (442)
                      ...      .++...++....+.+++.+...+ ..+.+.+..++ +++++.+++.+...++|..+||.++|.+.+     
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~-----  365 (390)
T TIGR02718       291 WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD-----  365 (390)
T ss_pred             HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            211      23444445555666666677666 47777777765 889999999999999999999999999998     


Q ss_pred             CCcccccccccCCcChhHHHHHHHHHHHHHH
Q 013453          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (442)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  231 (442)
                                 ..+|...+...+++.++..+
T Consensus       366 -----------~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       366 -----------RFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             -----------HHccHHHHHHHHHHHHHHHH
Confidence                       34455555666655555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.27  E-value=1.1e-10  Score=109.81  Aligned_cols=127  Identities=13%  Similarity=-0.003  Sum_probs=102.7

Q ss_pred             hhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc-----chH
Q 013453           62 PFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNF  135 (442)
Q Consensus        62 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-----~~~  135 (442)
                      ...|.+ .+++|.++.+      .++......++..++.++.|+++||+|+|+.+.++.++..++.++..+.     ++.
T Consensus       236 ~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  309 (406)
T PRK15402        236 ALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAY  309 (406)
T ss_pred             HHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence            334554 4668888888      8888888888999999999999999999999999888777777666543     356


Q ss_pred             HHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.+++.-++.|++.+...+. ...... .++++|++..+..+....+|..+|+.+++.+.+
T Consensus       310 ~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        310 LWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77788889999998877663 444433 345899999999999999999999999999987

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.27  E-value=1.5e-10  Score=103.01  Aligned_cols=177  Identities=14%  Similarity=0.159  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHH-HhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      .+....++.+...-+.+.+...-..+.. ++|++..+      ...+.....+..+++++++|+|.||+|.|+++.++++
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lv  326 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLV  326 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHH
Confidence            3443344444444344444444455554 99999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccccc
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (442)
                      +..+.++..-+......+.+.-.+.|...|..+. +.++.++..|+++-++.+|+++.....++.+||.+-+.+.+.+++
T Consensus       327 i~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         327 ILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            9999998888777777777778899999888777 699999999999999999999999999999999999999884321


Q ss_pred             CCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhcccc
Q 013453          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (442)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (442)
                                     -|..+....++..+.++.+..+|++
T Consensus       407 ---------------~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         407 ---------------SRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             ---------------hhhHHHHHHHHHHhhHhhEEeecCC
Confidence                           2333344444444455555666654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.26  E-value=2e-10  Score=108.79  Aligned_cols=137  Identities=18%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             hHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHH-H--
Q 013453           53 TALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-L--  128 (442)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~-~--  128 (442)
                      .......+....|.+.++ +|.+..+      .++....+.++..++.+++|+++||+|||+++..+..+..+... .  
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            344444556667877665 7998888      88888899999999999999999999999998876544332221 1  


Q ss_pred             -HhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhH-hhhhHHHHHHHhhhhhcc
Q 013453          129 -FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       129 -~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~  195 (442)
                       ....+++..+.+..++.|++.+...+ ...++.|.+|+++|+.++++.+. +..++..++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence             11234454555556666777666666 47889999999999999998644 444557789999999988

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.25  E-value=2.8e-11  Score=115.06  Aligned_cols=148  Identities=14%  Similarity=0.165  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      .++.+.+..++............+.+.++...+..+      .+++.+...++..++.+++++++||+|+|+++..+.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~  296 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL------FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILL  296 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            334344444444444443333334443332113344      67788888999999999999999999999999999988


Q ss_pred             HHHHHHHHhcc-chHHHHHHHHHHHHhhcchhhH-HHHHhhhhcc-------ccchhhhhhhhhHhhhhHHHHHHHhhhh
Q 013453          122 VVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGF  192 (442)
Q Consensus       122 ~~i~~~~~~~a-~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (442)
                      ..++.+...+. ++.+.+++..++.|++.+...+ ..++++|..+       ++++|...++.+....+|..+++.+.+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~  376 (437)
T TIGR00792       297 MVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL  376 (437)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777665 4567777788889998888777 4888888765       5567999999999999999999999999


Q ss_pred             hcc
Q 013453          193 LAQ  195 (442)
Q Consensus       193 l~~  195 (442)
                      +.+
T Consensus       377 ll~  379 (437)
T TIGR00792       377 ILG  379 (437)
T ss_pred             HHH
Confidence            987

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.25  E-value=1.3e-10  Score=111.11  Aligned_cols=153  Identities=10%  Similarity=0.051  Sum_probs=100.8

Q ss_pred             chhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCc-------hhhHHHHHHHHHHHHHHhcc
Q 013453           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGLS  132 (442)
Q Consensus        61 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~a  132 (442)
                      ...+|.+ .+++|.+..+      .+.+.+.+.++..++.+++|+++||+|||       ....+..++.++..++.+..
T Consensus       272 ~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~  345 (476)
T PLN00028        272 DNIIAEYFYDRFGLSLET------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA  345 (476)
T ss_pred             HhHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc
Confidence            3445555 4667999888      99999999999999999999999999865       23333344444444555556


Q ss_pred             chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCccccccccc
Q 013453          133 VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFG  211 (442)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~  211 (442)
                      ++.+..++.-++.+++.+...+ ..+++.+.. +++|+...|+.+.+..+|..++|.+.+ ..+                
T Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~----------------  407 (476)
T PLN00028        346 NSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGS----------------  407 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcC----------------
Confidence            6666666666666665444444 355666654 478999999987777777766665533 111                


Q ss_pred             CCcChhHHHHHHHHHHHHHHHHhhcc
Q 013453          212 KFPYFLPCLCISLFAFGVTIAAFWLP  237 (442)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (442)
                      ..+|+..+.+.+++.++..+..++++
T Consensus       408 ~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        408 SYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             CccHhhHHHHHHHHHHHHHHHHHhee
Confidence            22345555777766666666655554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.25  E-value=1.8e-10  Score=109.25  Aligned_cols=176  Identities=11%  Similarity=0.048  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      ++...+..++............|.+.++ .|.+..+      .++....+.++..++.++.|+++||+++|+....+..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  326 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFF  326 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHH
Confidence            3333333344444444455667777765 6888888      89999999999999999999999999754322233222


Q ss_pred             HH---HHHHHHhc--cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhH-HHHHHHhhhhhc
Q 013453          122 VV---IFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLA  194 (442)
Q Consensus       122 ~~---i~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~l~  194 (442)
                      ..   ++.+....  ..+.+...+.-++.|.+...... ......|.+|+++|+++.|+.+....+| .+++|.+.|.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~  406 (438)
T TIGR00712       327 MTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  406 (438)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence            21   12222122  22344444444455543222222 2356789999999999999998887776 578999999999


Q ss_pred             cccccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccC
Q 013453          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  240 (442)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~  240 (442)
                      +       ..|         |...+.+.....++. +..+...||++
T Consensus       407 ~-------~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       407 D-------FFG---------WDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             H-------hcc---------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8       333         334435444444443 44455566653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00898 2A0119 cation transport protein

Probab=99.24  E-value=1.8e-10  Score=111.57  Aligned_cols=136  Identities=21%  Similarity=0.125  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHhhcchhhH-HHHHhhhhcc
Q 013453           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGP-IKAYACEIFR  164 (442)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~--~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~  164 (442)
                      .....+....+.++.+++.||+|||+++.++.++.+++.++..+.++.  +...+.-++.+++.+...+ ...+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334556677888999999999999999999999988888887776544  4455555666666555555 5889999999


Q ss_pred             ccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCC
Q 013453          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (442)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (442)
                      ++.|++++|+.+....+|.+++|.+.+ +.+                 .++..++.+.+...++..+..+++||++.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            999999999999999999999999998 432                 22345556666676666666778888654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.23  E-value=3.1e-10  Score=109.28  Aligned_cols=168  Identities=17%  Similarity=0.133  Sum_probs=114.1

Q ss_pred             chhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccc--h
Q 013453           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--N  134 (442)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~--~  134 (442)
                      ........|.+.+++|.+..+      ..+......+...++.++.|+++||+|||++++.+.++.+++.++.+...  +
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~  360 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ  360 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            334445568888889988777      67777778888999999999999999999999999998888877765431  1


Q ss_pred             -HH-HHHHHHHHHHhhcch-hhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccc
Q 013453          135 -FW-MAVLTRFLLGSLNGL-LGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (442)
Q Consensus       135 -~~-~l~~~r~l~G~~~g~-~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~  210 (442)
                       .+ .....-++.+.+.+. ..| ...++.|.+|+++|++++++.+....+|..+++.+.+.+.+.        +|  ..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~--------~~--~~  430 (479)
T PRK10077        361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN--------SW--LV  430 (479)
T ss_pred             cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc--------cc--hh
Confidence             11 222333444444332 345 489999999999999999999999999999887766554410        00  00


Q ss_pred             cCCcChhHHHHHHHHHHHHHH-HHhhccccC
Q 013453          211 GKFPYFLPCLCISLFAFGVTI-AAFWLPETL  240 (442)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~  240 (442)
                      +..+++..+.+.++..++..+ .+++.||++
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        431 AHFHNGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             hhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence            023334444555555554443 344566654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.6e-10  Score=102.67  Aligned_cols=158  Identities=13%  Similarity=0.130  Sum_probs=125.4

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII  116 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~~~  116 (442)
                      .+.++.++++.+..+..+..+.-..|.+. |..|.+..+      .++..+.+-.+...|.+++|+++||.  |||....
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~  324 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA  324 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence            34567788888888989988888888775 557889888      99999999999999999999999994  6776554


Q ss_pred             -HHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhh-cchhhHHHHHhhhhccccchhhhhhhhhHhhhh-HHHHHHHhhh
Q 013453          117 -MGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGG  191 (442)
Q Consensus       117 -~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~-~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~  191 (442)
                       +.+++..++.+..-+++  |+++..+.-++.|+. .|...-+.....|..|++--|.+.|+.+.+..+ |.+.+...-+
T Consensus       325 ~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g  404 (448)
T COG2271         325 LIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLG  404 (448)
T ss_pred             HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcce
Confidence             44555555555555665  457777777888876 444433567788999999999999999999998 8999988888


Q ss_pred             hhccccccCCCcccccccc
Q 013453          192 FLAQPAEKYPNLFSSESLF  210 (442)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~  210 (442)
                      ++.+       .+||.+.|
T Consensus       405 ~i~d-------~~gW~g~F  416 (448)
T COG2271         405 YIAD-------TWGWDGGF  416 (448)
T ss_pred             eeEe-------cCCCcchH
Confidence            8888       57777666

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.23  E-value=5.3e-10  Score=105.90  Aligned_cols=134  Identities=12%  Similarity=0.053  Sum_probs=88.5

Q ss_pred             hcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHh---
Q 013453           55 LPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---  130 (442)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~---  130 (442)
                      .........+|.+. +++|.+..+      .++..+...++..+++++.|+++||+|||+++.++.++..+......   
T Consensus       257 ~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        257 LCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            33444556677665 557888877      88888888888899999999999999999988776654433332111   


Q ss_pred             -ccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhh-HHHHHHHhhhhhc
Q 013453          131 -LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLA  194 (442)
Q Consensus       131 -~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~  194 (442)
                       ..++....+..-.+.+++.+...+ ...+++|.+|++.|+.++|+.+...++ .....|.+.+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~  397 (432)
T PRK10406        331 QNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK  397 (432)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence             122333222222222233334444 477889999999999999988765543 3445777777553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.22  E-value=9.9e-11  Score=108.93  Aligned_cols=154  Identities=16%  Similarity=0.148  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC-CchhhH-HHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVII-MGT  119 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~~~-~~~  119 (442)
                      ++.+.+..+.............|.+. +++|.+..+      .+++.+.+.++..++.++.|++.||.. ||+... ...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  291 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF  291 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence            33444444554544455555666655 567888888      999999999999999999999999864 333222 222


Q ss_pred             -HHHHHHHHHHhc--cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          120 -ASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       120 -~~~~i~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                       ....++......  ..+.....+..++.|+......+ ...++.|.+|+++|+++.++.+....+|..++|.+.|.+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       292 MALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence             222222222222  33555566666777765444444 47788999999999999999999999999999999999998


Q ss_pred             ccccCCCccccccc
Q 013453          196 PAEKYPNLFSSESL  209 (442)
Q Consensus       196 ~~~~~~~~~gw~~~  209 (442)
                             ..||++.
T Consensus       372 -------~~g~~~~  378 (379)
T TIGR00881       372 -------GFGWAGA  378 (379)
T ss_pred             -------hhccccc
Confidence                   5566543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.22  E-value=3.7e-10  Score=104.68  Aligned_cols=172  Identities=16%  Similarity=0.175  Sum_probs=123.3

Q ss_pred             HHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHH
Q 013453           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (442)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  128 (442)
                      .......+.+.+......+.++-|++..+      ..+++....+...+..+.+..+.||+|||+.++.+..+..+..++
T Consensus       278 ~~~qq~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~  351 (485)
T KOG0569|consen  278 SFAQQFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL  351 (485)
T ss_pred             HHHHHhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            33334445566667778888999999998      899999999999999999999999999999999999999888887


Q ss_pred             Hhccc---hHH------HHHHHHHHHHhhcch-hhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          129 FGLSV---NFW------MAVLTRFLLGSLNGL-LGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       129 ~~~a~---~~~------~l~~~r~l~G~~~g~-~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      +....   +..      ..+++.++..++.+. ..| ..-+.+|.+|++.|..+++.......+...+-...-..+.+  
T Consensus       352 ~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~--  429 (485)
T KOG0569|consen  352 MSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN--  429 (485)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            76532   111      123444444444333 345 47889999999999999999988888887776666666655  


Q ss_pred             ccCCCcccccccccCCcChhHHHHHHHHHH-HHHHHHhhccccCCCC
Q 013453          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETLHRH  243 (442)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~  243 (442)
                           .+|         - ..+++..+.++ ..+..++.+||++.+.
T Consensus       430 -----~~g---------~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  430 -----VIG---------P-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             -----Hhc---------c-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence                 222         1 12233344443 4456778899987543

>TIGR00896 CynX cyanate transporter

Probab=99.21  E-value=3.7e-10  Score=104.12  Aligned_cols=141  Identities=13%  Similarity=0.032  Sum_probs=109.1

Q ss_pred             HHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHHHHHHHHHHHH
Q 013453           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNT  127 (442)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~  127 (442)
                      ..++...........+|.+.++.|.+..+      .+.+.+.+.++..++.++.|++.||+ +||+.+..+..+..++.+
T Consensus       205 ~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  278 (355)
T TIGR00896       205 FFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLC  278 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            33333444445556778888888998888      99999999999999999999999999 567777788888888777


Q ss_pred             HHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhcc-ccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       128 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      ...+.++..... .-++.|++.|...|. .+.+.+..+ +++++...++.+....+|..++|.+.|++.+.
T Consensus       279 ~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       279 GLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776655433322 456789998888774 666665554 56678889998888899999999999999983

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.21  E-value=6.8e-10  Score=103.64  Aligned_cols=124  Identities=12%  Similarity=0.020  Sum_probs=99.8

Q ss_pred             HHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH-HHHHHHHHhccchHHHHHHHH
Q 013453           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS-VVIFNTLFGLSVNFWMAVLTR  142 (442)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~-~~i~~~~~~~a~~~~~l~~~r  142 (442)
                      .|.+.+++|.+..+      .+++...+.++..++.++.+++.||.+ |+.++.+..+ .....++....++.+.+.+..
T Consensus       240 ~p~~~~~~g~s~~~------~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (394)
T PRK10213        240 RPVYMNLAGFGVDG------LTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVA  312 (394)
T ss_pred             HHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            47778889999888      999999999999999999999999964 4444444444 444444545666788888888


Q ss_pred             HHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          143 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       143 ~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++.|++.+...+. .+++.+..| +++++..+......++|..+||.++|.+.+
T Consensus       313 ~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        313 IIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998888884 778888887 557778888888889999999999999998

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.20  E-value=5.2e-10  Score=103.43  Aligned_cols=182  Identities=16%  Similarity=0.273  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhc-ccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      ++....+..++.......+....+.+.++.| .+...      .+.+.++..++-.+.-...+++..|+|.|+++.++.+
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~  281 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV  281 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3445555666667777777788888899988 56666      7888888888888999999999999999999999999


Q ss_pred             HHHHHHHHHhcc-chHHHHHHH----HHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhH-hhhhHHHHHHHhhhhh
Q 013453          121 SVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFL  193 (442)
Q Consensus       121 ~~~i~~~~~~~a-~~~~~l~~~----r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l  193 (442)
                      .+++=..+++.. ++.+...+.    ..++|+..+...+ ...++.+..|++.|+++.++++. ..++|..+|..++|++
T Consensus       282 ~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l  361 (400)
T PF03825_consen  282 AYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL  361 (400)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999998888887 554443333    4569999888888 59999999999999999998776 5789999999999999


Q ss_pred             ccccccCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhcccc
Q 013453          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET  239 (442)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~  239 (442)
                      .+       .+|-+..+ +  |...+.+.+.+.++..+ .+++.||+
T Consensus       362 ~~-------~~g~~~~~-~--~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  362 YD-------AFGARGMF-D--WSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HH-------Hhcchhhh-h--HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99       55555444 1  33333444444444433 33344443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.20  E-value=2.2e-10  Score=107.16  Aligned_cols=129  Identities=11%  Similarity=0.040  Sum_probs=107.0

Q ss_pred             hhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHHHHHHHHHHHHHhccchHHHHHH
Q 013453           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL  140 (442)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~  140 (442)
                      ..+|.+.++.+.++.+      .+++.+...++...+..+.+++.|| ++.|+.+..+.++.+++.++.+++++++.+.+
T Consensus       229 ~~~p~~~~~~~~~~~~------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  302 (400)
T PRK11646        229 LMLPIMVNDIAGSPSA------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFT  302 (400)
T ss_pred             HhhhhhHHhhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4567777776656666      8888888887777666666777664 67677778888888888888888888888888


Q ss_pred             HHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          141 TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       141 ~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      ..++.|++.+...| ..+++.|..|+++|++.+++.+....+|..+||.++|++.+.
T Consensus       303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        303 LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            88888998888777 488999999999999999999999999999999999999983

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.9e-10  Score=109.06  Aligned_cols=175  Identities=15%  Similarity=0.226  Sum_probs=148.8

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC--CchhhHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGT  119 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~~~~~~  119 (442)
                      .++.+.+...+..++.......+|.+.++.+.++.+      .+.+.++..+...++.+..|+++|+..  ++.+..+++
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~l  372 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTL  372 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHH
Confidence            344566667777777788888889999999999999      999999999999999999999999988  556677788


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      +..+++...++++++++.++...++.|++.|.+... ...+.|..+.++-..+.|+.....+++..+||+++|++.+..+
T Consensus       373 l~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  373 LIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG  452 (509)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence            888999999999999999999999999999999885 5688999999999999999999999999999999999888332


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhcc
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (442)
                      +               |...+...++..++....++..|
T Consensus       453 ~---------------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  453 N---------------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             C---------------eeeehhhcChHHHHHHHHHHHhH
Confidence            1               44445677777766666666665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.20  E-value=5.1e-11  Score=103.31  Aligned_cols=125  Identities=21%  Similarity=0.295  Sum_probs=96.3

Q ss_pred             HHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHhhcchhhHHHHHhhhhccccch
Q 013453           93 FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW----MAVLTRFLLGSLNGLLGPIKAYACEIFREEHQ  168 (442)
Q Consensus        93 ~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~----~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r  168 (442)
                      +.-.-|.++.+++.||+|||+++..+.+++++..++...+.+-.    +++.+|++.   .|.+.+++.|..|.+|.+.|
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi---sg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI---SGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH---hchheEEEEecCcccchhhh
Confidence            44567889999999999999999999999999998877765433    334445433   34455568899999999999


Q ss_pred             hhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccc
Q 013453          169 ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (442)
Q Consensus       169 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (442)
                      +.+.|....+..+|.++.|+++ ...+                 ..-..+..+.+.+.+++.+...++|-
T Consensus       469 atgvGtcSsmaRIggI~~p~iA-~~~e-----------------~s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA-MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH-HHhc-----------------cceeehHHHHHHHHHHHHHHheeeee
Confidence            9999999999999999999999 3322                 22234556677777777777777774

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.20  E-value=3.4e-08  Score=89.36  Aligned_cols=325  Identities=14%  Similarity=0.095  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~  162 (442)
                      .+.+.-+-.+...+.-+.+.+..+|+..+.=.....+++.++.++.+++++.+.-+++-++.+++.|.--.. ..+ +..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence            455666677778888888899999988666667777788899999999999999889999999988876664 444 445


Q ss_pred             ccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHh-hccccCC
Q 013453          163 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLH  241 (442)
Q Consensus       163 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  241 (442)
                      +++    ..++-+..+.+.+.++|+..-..+.+ .              ....|........+.++..+.++ .+|+++.
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~--------------g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~  200 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L--------------GLSPRTTLLIMLVLPAIFLLSYFFLLPSPPT  200 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHH-h--------------CcCHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            654    35778888888888888876655543 1              34445555555555544444433 4444332


Q ss_pred             CCCCCC-ccchhhhhhhhhhhhhhhhhhcccccccccccc-cchhHHHHHHHHHHHHHHh-hHHHHHHHHhcCCcccCcc
Q 013453          242 RHNDDD-DSCDVSYDALESASAEVKEEEGREATPKKSLLK-NWPLMSSIIVYCVFSLHDM-AYSEIFSLWANSPKKLGGL  318 (442)
Q Consensus       242 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  318 (442)
                      .....+ +..++.++.....+.++++.+...+.+.++-++ -+.+...++-.+...+..+ ......+......   . .
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~---~-~  276 (402)
T PF02487_consen  201 NRPYQESESEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPN---S-F  276 (402)
T ss_pred             cCCCcccCCCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCc---c-C
Confidence            211111 111100000000000000001111111221111 1222222222222222222 2223333332211   1 1


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 013453          319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV  398 (442)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (442)
                      .-...+.-+....+.++.++++- ...++  |.++.+++.+...+..+.+.+-.+....+  ..|+.+ +..+.-|..++
T Consensus       277 ~~~r~~Y~~Y~~~YQ~GVFISRS-S~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fip--si~ivf-~lif~eGLlGG  350 (402)
T PF02487_consen  277 FSPRDQYRWYQLLYQLGVFISRS-SLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIP--SIWIVF-VLIFYEGLLGG  350 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhc-ceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHH-HHHHHHHHhhh
Confidence            11234455566666677666654 22221  22333333332233333322222222211  234333 33344455555


Q ss_pred             HHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          399 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      ..+...+..+.+..|+++|.-++|........|-.++..+
T Consensus       351 a~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll  390 (402)
T PF02487_consen  351 ASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLL  390 (402)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5666666666777899999999999999988888877654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.19  E-value=1.4e-09  Score=92.47  Aligned_cols=132  Identities=14%  Similarity=0.195  Sum_probs=108.6

Q ss_pred             cchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc---
Q 013453           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---  132 (442)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a---  132 (442)
                      ..+.+...-|.+++++|.|.+|      ...+.++..+|..+ +++.|.+.|++|+|.++.+|.+...++..+...+   
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3455566679999999999999      99999999999876 5889999999999999999999999999877652   


Q ss_pred             ----chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          133 ----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       133 ----~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                          .++|.+.+..++.|.+.+...+ +.....+.+| ++||++.|+.-...++++.+-..+...+.+
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                4678888877888787666655 4555667887 589999999999999998887777666654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.17  E-value=8.3e-10  Score=102.82  Aligned_cols=123  Identities=13%  Similarity=0.115  Sum_probs=93.0

Q ss_pred             HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhc-cchHHHHHHHHH
Q 013453           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-SVNFWMAVLTRF  143 (442)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~-a~~~~~l~~~r~  143 (442)
                      |.+.+.+|.++.+      .+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..+
T Consensus       224 ~~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETS------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555668999888      999999999999999999999999999999999988888877765543 455566666666


Q ss_pred             HHHhhcchhhH-HH-HHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          144 LLGSLNGLLGP-IK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       144 l~G~~~g~~~~-~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.+++.....+ .. ....+..+++.++..  ..+....+|..+||.++|.+.+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence            77776443333 43 344444455555544  3466788999999999999987

>TIGR01272 gluP glucose/galactose transporter

Probab=99.16  E-value=1.3e-09  Score=97.81  Aligned_cols=145  Identities=16%  Similarity=0.107  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHH---hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .++...+..|+............+.+.++   +|.++.+      .++..+.+..+..++.+..+++.||+|+||++.++
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~  214 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFN  214 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            34444444444444455566667777654   5888888      99999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ..+..++.++....++...+ .+-++.|++.+...|. .+...+..|++ .+++.++. ....+|..++|.+.|.+.+
T Consensus       215 ~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       215 AFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            88888777666655544333 3556888998888884 88888877753 45566665 5667899999999999998

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.13  E-value=6.5e-10  Score=107.21  Aligned_cols=147  Identities=16%  Similarity=0.120  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      +....+..++..+........+|.+.++ +|.+..+      .+++.....++..++.++.|++.||+|||+++.++..+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~  330 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLIL  330 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            3333444444444444455566766654 7888888      99999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhc----cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          122 VVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       122 ~~i~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+++..+..+    ..+++.+....++.|++.+...+ ......+..|+++|+++.++.+....+|..+|+.+.+.+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       331 YAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877663    23566777778899999888765 57777788999999999999999999999999999998876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.11  E-value=2.5e-09  Score=97.20  Aligned_cols=183  Identities=21%  Similarity=0.227  Sum_probs=133.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      ++++.+.+........++......+.+-+++--+..+  -....|.+.+..-+.-.+...+..++.+|+|.|+.++++..
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~--g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~  297 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQ--GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGV  297 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence            4444333333333333333333455555544333221  11229999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhh-hhHhhhhHHHHHHHhhhhhccccc
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAE  198 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~  198 (442)
                      +..+=.++++++++.+.+.+.+.+.|+-.+.... +..|+++.+|+|..++...+ .+.+.++|..+.+.++|.+.|   
T Consensus       298 i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---  374 (412)
T PF01306_consen  298 IMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---  374 (412)
T ss_dssp             HHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---
Confidence            9999999999999999999999999999888877 59999999999988888887 588999999999999999999   


Q ss_pred             cCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCC
Q 013453          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLH  241 (442)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~  241 (442)
                                   +.+++..+.+.+.+.+.. ++..+.++++++
T Consensus       375 -------------~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  375 -------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             -------------hcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence                         556666666666665554 445566665444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.11  E-value=7.2e-10  Score=102.27  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHH-HHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      ++.+.+..++............|.+.+++|.+.++      .+.+.+... ++..++.+++|++.||+|||+.+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33344444444455555666777777779999888      898887765 67889999999999999999999988888


Q ss_pred             HHHHHHHHhcc-----------chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhh
Q 013453          122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG  180 (442)
Q Consensus       122 ~~i~~~~~~~a-----------~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~  180 (442)
                      .++...+..+.           ++.+.+....++.+++.+...+ ..+++.|.+|+++|++.+++.+...+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            87776655442           4567788888999999898888 59999999999999999999877654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.11  E-value=1.5e-09  Score=101.89  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=100.6

Q ss_pred             HHHHHHhcccccchhhhhHHHHHHHHHH-HHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHH---hcc-chHHHHH
Q 013453           65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (442)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~a-~~~~~l~  139 (442)
                      +.+.+++|.++++      .+++.+... ++..++.++.|++.||+|||+.+..+..+..+..+..   ++. ++.+.++
T Consensus       234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~  307 (402)
T PRK11902        234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA  307 (402)
T ss_pred             HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4566778999888      999886654 5688999999999999999998887776666554433   343 4556655


Q ss_pred             HHHHH----HHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCc
Q 013453          140 LTRFL----LGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (442)
Q Consensus       140 ~~r~l----~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (442)
                      +.-++    .|++.+...+ ...++.+.+|.+++    ++.+...++|..+++.++|.+.+                ..+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~----------------~~G  367 (402)
T PRK11902        308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE----------------AYG  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            55544    4444444455 36677777665544    55555667788777778999998                445


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhccc
Q 013453          215 YFLPCLCISLFAFGVTIAAFWLPE  238 (442)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e  238 (442)
                      |+..+.+.++++++.++..+..+.
T Consensus       368 ~~~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        368 WPGFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555557777777666555544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.09  E-value=6.1e-10  Score=102.54  Aligned_cols=136  Identities=20%  Similarity=0.256  Sum_probs=112.5

Q ss_pred             HHHHHHHhHhcchhhchhHHHH-HHHhccc-ccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHH
Q 013453           46 IWIIVLCTALPISSLFPFLYFM-IKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (442)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (442)
                      .....+...+.........|.+ .+++|.+ ..+      .+++.+...+...++.++.|++.||+|+|+..........
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  284 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLI  284 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            3334444444555567777886 7889999 677      8999999999999999999999999999888888887777


Q ss_pred             HHHHHHhccc---hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHH
Q 013453          124 IFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (442)
Q Consensus       124 i~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (442)
                      +..+...+..   +....++.-++.|++.+...+ ..+++.|..|+++|+++.++.+...++|..+||
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  285 LGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7777666543   457777788899999888888 599999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.08  E-value=2e-09  Score=101.19  Aligned_cols=146  Identities=12%  Similarity=0.127  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHHh--cccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchh-hHHHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGTA  120 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-~~~~~~  120 (442)
                      +...+..++.......+...+|.+.+++  +.+..+      .+...+...++..++.++.|+++||++||+. .....+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~  318 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYL  318 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHH
Confidence            3344444445555566677888888875  456666      8999999999999999999999999998775 334444


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       121 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +..++..+.....+....+++-.+.+++.....+. .....|.+|+++|++++|+.+....+|.+++|.+.+.+.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       319 FAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence            44443332222223222222222223332222332 4455678999999999999999999999999999999988

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.06  E-value=2.9e-09  Score=113.75  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=114.2

Q ss_pred             hhhchhHHHH-HHHhccccc-chhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchH
Q 013453           58 SSLFPFLYFM-IKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (442)
Q Consensus        58 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~  135 (442)
                      ......+|.+ .+.+|.+.. +      .+++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.
T Consensus       249 ~~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (1146)
T PRK08633        249 QLAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSL  322 (1146)
T ss_pred             HHHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhH
Confidence            3334445544 466888888 7      9999999999999999999999999999999999998888888888888898


Q ss_pred             HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.+++..++.|++.+...+ ..+++.+..|+++|++++++.+....+|.++++.+++.+..
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        323 ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999888776 58999999999999999999999999999888888877653

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.06  E-value=3.2e-09  Score=100.41  Aligned_cols=149  Identities=17%  Similarity=0.197  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      +.+..+....++..+.........+.+.++.--+++.      .+.+.....++..++.+++++++||+|+|+++..+..
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~  298 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL  298 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence            4455566667777777777777777777665444455      7888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc--hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccc-------cchhhhhhhhhHhhhhHHHHHHHhh
Q 013453          121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       121 ~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                      +.+++.++..+.+  |.+.+++.-++.|++.+...+ ..++++|..+.       ++.|...+..+....+|..+++.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence            9999999988876  999999999999999888877 48899888763       4458888999999999999999999


Q ss_pred             hhhcc
Q 013453          191 GFLAQ  195 (442)
Q Consensus       191 ~~l~~  195 (442)
                      +.+.+
T Consensus       379 g~~l~  383 (428)
T PF13347_consen  379 GLLLA  383 (428)
T ss_pred             HHHHH
Confidence            98887

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.06  E-value=2.5e-09  Score=102.44  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhh----
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----  115 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~----  115 (442)
                      +.++..++..+............+|.+. +++|.+..+      .+++.+...++..++.++.|+++||+++|+..    
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~  334 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA  334 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            3445555666666666666666778775 557998888      99999999999999999999999998755321    


Q ss_pred             ----HHHHHHH--HHHHHHHhc-cchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHH
Q 013453          116 ----IMGTASV--VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (442)
Q Consensus       116 ----~~~~~~~--~i~~~~~~~-a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (442)
                          ..+....  .+..+.... ..+....++.-.+.+.+.+...+. .....|..| +.+|...++.+....+|..++|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p  413 (465)
T TIGR00894       335 ARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIAS  413 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHH
Confidence                1111111  111111122 234444444444445444444443 445556665 4899999999999999999999


Q ss_pred             HhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhcc
Q 013453          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (442)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (442)
                      .+.+.+.+..       +      ...|...+.+.++..++..+....++
T Consensus       414 ~l~g~~~~~~-------~------~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       414 TLAGNILSQD-------S------KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HhhheeeCCC-------C------chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999887621       1      12356666777666666554444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.06  E-value=2.2e-09  Score=95.61  Aligned_cols=169  Identities=17%  Similarity=0.184  Sum_probs=121.7

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .++.+.+++.++...-+.-.+...+|.+ .++|+.++.+      .|.+...+.+...+..+.+|+++||+|.+|++...
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~  290 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV  290 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence            3445555555555555555555666654 5779999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc-------chHHHHHH----HHHHHHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHH
Q 013453          119 TASVVIFNTLFGLS-------VNFWMAVL----TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (442)
Q Consensus       119 ~~~~~i~~~~~~~a-------~~~~~l~~----~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (442)
                      ...+.++..+....       .+....++    ..++.|+|.|.   +..++..++|+ +-|.+.|+..+..++|...-|
T Consensus       291 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGs---vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp  366 (417)
T COG2223         291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGS---VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLP  366 (417)
T ss_pred             HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcch---heeechHHHHh-hhhHHHHHHHHhccccccchh
Confidence            98888888877665       33444444    44555555444   35666676664 788899999999999999999


Q ss_pred             HhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHH
Q 013453          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (442)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (442)
                      ..-+...+..       |        .+...+.+.....+++.+..
T Consensus       367 ~~~g~~~~~t-------g--------~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         367 LAFGVSLDLT-------G--------SYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             HHHHHHHHhc-------c--------cHHHHHHHHHHHHHHHHHHH
Confidence            8888888732       1        24444455555555555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.05  E-value=2.5e-09  Score=102.99  Aligned_cols=142  Identities=17%  Similarity=0.142  Sum_probs=114.6

Q ss_pred             HHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHH
Q 013453           48 IIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (442)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  126 (442)
                      +..+.............|.+. +.+|.++.+      .|+....+.++..++.++.|++.||+|+|+.+..+.++..++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        266 VMAMTAMITLVGFELLMAQELQFVHGLSPLE------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSF  339 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            333333333333444556554 457899988      9999999999999999999999999999999998888887777


Q ss_pred             HHHhc---cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          127 TLFGL---SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       127 ~~~~~---a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++...   .++.+...+..++.|++.|...+ ....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       340 ~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        340 YGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65543   34566667788999999888776 57888888999999999999999999999999999998876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.05  E-value=3.6e-09  Score=98.78  Aligned_cols=123  Identities=18%  Similarity=0.239  Sum_probs=94.1

Q ss_pred             chhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc-----ch
Q 013453           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VN  134 (442)
Q Consensus        61 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-----~~  134 (442)
                      ....|.+ .+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+..+..+..++.++..+.     ++
T Consensus       226 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSV------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS  299 (385)
T ss_pred             HHcChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3344544 4578988888      9999999999999999999999999999999988888777776665543     23


Q ss_pred             HHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhh-HHHHHHHhh
Q 013453          135 FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALG  190 (442)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~  190 (442)
                      ...+++..++.|++.+...+ ......|..| ++|+++.++.+..... |.+.+|.++
T Consensus       300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667788888887777 4777788776 6799999988776654 555555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.05  E-value=1.3e-07  Score=92.49  Aligned_cols=157  Identities=15%  Similarity=0.155  Sum_probs=115.4

Q ss_pred             hhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHHHHHHHHHHHHHhccch------
Q 013453           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN------  134 (442)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~a~~------  134 (442)
                      .....+.+.+|.++++      ...+...+....-+..+++|+++|+ +||+++++++.++..++..+.+++..      
T Consensus         9 iLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~   82 (654)
T TIGR00926         9 ILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP   82 (654)
T ss_pred             HHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence            3344556678888888      7888888888888999999999997 79999999999999999988776421      


Q ss_pred             --HHHHHHHHHHHHhhcchhhHH-HHHhhhhcccc---chhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccc
Q 013453          135 --FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (442)
Q Consensus       135 --~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~  208 (442)
                        ....+++-.+..+|.|..-|+ .+...|.++++   +|-..+.++..+.++|+.+++.+.+++.+....+..      
T Consensus        83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~------  156 (654)
T TIGR00926        83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC------  156 (654)
T ss_pred             hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------
Confidence              233556667777788888884 99999999754   366788899999999999999999988752110000      


Q ss_pred             cccCCcChhHHHHHHHHHHHHHHHH
Q 013453          209 LFGKFPYFLPCLCISLFAFGVTIAA  233 (442)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~  233 (442)
                         ..+|...+.+.++..++.++..
T Consensus       157 ---~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       157 ---QDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             ---CcchHHHHHHHHHHHHHHHHHH
Confidence               2245555566665555554443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.05  E-value=2.2e-08  Score=87.54  Aligned_cols=364  Identities=13%  Similarity=0.042  Sum_probs=196.2

Q ss_pred             CCChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-----ccCC
Q 013453           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGR  111 (442)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d-----r~Gr  111 (442)
                      +..++++..+.+...+++...+... .+|.+.+.-|.|.++      .+...-+ ... ..--++|.++.|     |+||
T Consensus        27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a~fS~a-y~P-~sLKllWaPiVDs~y~k~~Gr   97 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QAIFSFA-YWP-FSLKLLWAPIVDSVYSKRFGR   97 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hhhhhhh-hhH-HHHHHHHHhhhHHHHHHhhcc
Confidence            3445677888888999999988888 899999988888776      4443222 222 233568889999     9999


Q ss_pred             chhhHH-HHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHh
Q 013453          112 KPVIIM-GTASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA  178 (442)
Q Consensus       112 r~~~~~-~~~~~~i~~~~~~~-----------a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~  178 (442)
                      ||.-++ +..+.+....+.+.           .++...+....++.-+..+....+ -.+.-....+++.|-+......+
T Consensus        98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg  177 (510)
T KOG3574|consen   98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVG  177 (510)
T ss_pred             ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence            988654 23333333333322           234444444556666666776663 66777777788888877777777


Q ss_pred             hhhHHHHHHHhhhhhccccccCCCccccc--ccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhh
Q 013453          179 WGIGLIIGPALGGFLAQPAEKYPNLFSSE--SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDA  256 (442)
Q Consensus       179 ~~~g~~~g~~~~~~l~~~~~~~~~~~gw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  256 (442)
                      ...|.+++..+--.+....-..+...+|.  ..+-..+  -...+-+...+++-....+.+++++....++. ..     
T Consensus       178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~--gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~-~~-----  249 (510)
T KOG3574|consen  178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLA--GYLWFWGALFIVATTLVALLKKENDESVDEEL-EL-----  249 (510)
T ss_pred             HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhh--HHHHHHHHHHHHHHHHHHHhcCCCchhhhhhh-hc-----
Confidence            77777766554333322100000112222  0000000  00122233333333333333332222111000 00     


Q ss_pred             hhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHH
Q 013453          257 LESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSL  336 (442)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (442)
                                ..++..+..+++++-|............-..+.+-.+..++-+.      +.|++..+.++...+.--..
T Consensus       250 ----------~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLl------e~Gv~ke~Lal~~v~~~plq  313 (510)
T KOG3574|consen  250 ----------GIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLL------EHGVPKEELALIAVPLVPLQ  313 (510)
T ss_pred             ----------CHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHH------HcCCChhHheeeeeehhhHH
Confidence                      00011223456677777776666666655555555555554433      35888888777665444455


Q ss_pred             HHHHhhHHHHHHHhhc-----hhHHHHHHHHHHHHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013453          337 LVFQLSLYPFLERILG-----PIMVARIAGVLTIPLLTSYPYIAMLSG------FGLAFLLNCASVVKNLLSVSIITGLF  405 (442)
Q Consensus       337 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (442)
                      ++....++++..+...     |....++........  +..+.+....      ....++.+....+...+....+....
T Consensus       314 I~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~--Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~m  391 (510)
T KOG3574|consen  314 IALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTA--LVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGM  391 (510)
T ss_pred             HhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHH--HHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHH
Confidence            5555556655553211     111222222222221  1112221111      12333344444555555556666677


Q ss_pred             hhhcccCChhhhhHHHHHHHHHHHHHHhhh
Q 013453          406 ILQNRAVDQDQRGAANGIAMTGMSLFKAAG  435 (442)
Q Consensus       406 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  435 (442)
                      +..+++.||...|+.+.+.|+..++|+-.-
T Consensus       392 af~aqisdp~iggTymTlLNTLsnLGg~wp  421 (510)
T KOG3574|consen  392 AFHAQISDPAIGGTYMTLLNTLSNLGGNWP  421 (510)
T ss_pred             HHHhhcCCcccCccHHHHHHHHHHhcCCcH
Confidence            888899999999999999999999987543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.04  E-value=3.9e-09  Score=112.43  Aligned_cols=147  Identities=14%  Similarity=0.092  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHH-HhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      ++...+..++..+....+...+|.+.+ .+|.+..+      .|++.+.+.++..+++++.|+++|+.++++.+..+.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~  300 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL  300 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence            333334333334444444556676665 47888888      99999999999999999999999998887777766666


Q ss_pred             HHHHHHHHhcc--------------------chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhh
Q 013453          122 VVIFNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG  180 (442)
Q Consensus       122 ~~i~~~~~~~a--------------------~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~  180 (442)
                      .+++.+..++.                    ++.+.+++..++.|++.+...+ ..+++.+.+|+++||+++|..+....
T Consensus       301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~  380 (1140)
T PRK06814        301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA  380 (1140)
T ss_pred             HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence            66555544432                    6778888888999999888877 59999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhcc
Q 013453          181 IGLIIGPALGGFLAQ  195 (442)
Q Consensus       181 ~g~~~g~~~~~~l~~  195 (442)
                      +|..+++++.+.+.+
T Consensus       381 ~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        381 AFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999874

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.3e-08  Score=91.50  Aligned_cols=147  Identities=21%  Similarity=0.315  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc----ccCCchhhH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVII  116 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~~~  116 (442)
                      +.++.+....+..-++...-....+.+.+++|++...      .+.+--...+...+.+|+.|..+|    ||||||.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI  105 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence            4555555555555666666667778889999999988      788888888888999999999999    599988887


Q ss_pred             HH-HHHHHHHHHHHhccchHH-----------------HHHHHHHHHHhhc-chhhHHHHHhhhhccccchhh-hhhhhh
Q 013453          117 MG-TASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQAL-GLSTVS  176 (442)
Q Consensus       117 ~~-~~~~~i~~~~~~~a~~~~-----------------~l~~~r~l~G~~~-g~~~~~~~~i~~~~~~~~r~~-~~~~~~  176 (442)
                      .. .+...++.++.+++.++.                 .++++-.+.-++. -...|+.+++.|...++++.+ +.+.+.
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            65 455666667777765432                 2333444444443 445678999999998877777 999999


Q ss_pred             HhhhhHHHHHHHhhhhh
Q 013453          177 TAWGIGLIIGPALGGFL  193 (442)
Q Consensus       177 ~~~~~g~~~g~~~~~~l  193 (442)
                      ...++|..+|-.+++++
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            99999999888887644

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.03  E-value=8.6e-09  Score=86.51  Aligned_cols=123  Identities=20%  Similarity=0.272  Sum_probs=99.6

Q ss_pred             HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHH-HHHHHHhccchHHHHHHHHHH
Q 013453           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV-IFNTLFGLSVNFWMAVLTRFL  144 (442)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~-i~~~~~~~a~~~~~l~~~r~l  144 (442)
                      .+.+++|.|..+      .+.+.+....-.++.+++.|.++||+|++...+.+..+.. ++-....+  +++.=+++..+
T Consensus       290 fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~  361 (459)
T KOG4686|consen  290 FFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTF  361 (459)
T ss_pred             HHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHH
Confidence            567899999999      8888888888888999999999999999988777654443 33333333  23333455677


Q ss_pred             HHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       145 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      .|+.......+ ...++...|+++.|++.+..+...++|..+.|++++.+.+.
T Consensus       362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            88887777764 77888889999999999999999999999999999999984

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.03  E-value=5.6e-09  Score=97.69  Aligned_cols=119  Identities=12%  Similarity=0.062  Sum_probs=85.1

Q ss_pred             HHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013453           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (442)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G  146 (442)
                      +.+++|.++.+      .+.+.+...++..++.++.|++.||+|||+++..+..+..++.++..+.++.+..+..-.+.+
T Consensus       230 ~~~~~g~~~~~------~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  303 (392)
T PRK10473        230 LMEQMGFSRGE------YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLIC  303 (392)
T ss_pred             HHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888888      899999999999999999999999999999999999988888888877766554444444444


Q ss_pred             hhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          147 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       147 ~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+.+...+. ....+..|.++|+   +......+++..+++.+++++.+
T Consensus       304 ~g~~~~~~~-~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        304 AGFSVGFGV-AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHHHHhHH-HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333221 2223344544443   44445556777777888888776

>PRK09848 glucuronide transporter; Provisional

Probab=99.02  E-value=1.8e-09  Score=102.89  Aligned_cols=147  Identities=16%  Similarity=0.144  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHH-HhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      +....+..++............|.+.+ .+|.+...      .++......++..++.++++++.||+|+|+++.++.++
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~  303 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALL  303 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            343444444444444444444554443 35554433      44445555677888999999999999999999999988


Q ss_pred             HHHHHHHHhccc--hHHHHHHHHHHHHhhcchhhH-HHHHhhhhcccc-------chhhhhhhhhHhhhhHHHHHHHhhh
Q 013453          122 VVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPALGG  191 (442)
Q Consensus       122 ~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~  191 (442)
                      ..++.++..+.+  +++.+++..++.|+|.+...+ ..++.+|..|.+       ++|...+..+....+|..+|+.+.+
T Consensus       304 ~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        304 GTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877776643  677777778889999888777 488888887654       4588899999999999999999999


Q ss_pred             hhcc
Q 013453          192 FLAQ  195 (442)
Q Consensus       192 ~l~~  195 (442)
                      .+.+
T Consensus       384 ~~l~  387 (448)
T PRK09848        384 FILG  387 (448)
T ss_pred             HHHH
Confidence            9886

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.02  E-value=1.4e-08  Score=94.91  Aligned_cols=122  Identities=13%  Similarity=0.092  Sum_probs=100.6

Q ss_pred             HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013453           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (442)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~  145 (442)
                      .+.+.+|.++.+      .|++.+...++..+++++.+++.||+++|+++..+. +.++...+.++.++++...+..++.
T Consensus       231 ~~~~~lg~s~~~------~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11195        231 WAPVALGITLNQ------PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            345568999988      999999999999999999999999999999888775 3445555556677777777888899


Q ss_pred             HhhcchhhH-HHHHhhhhccccc-hhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          146 GSLNGLLGP-IKAYACEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       146 G~~~g~~~~-~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                      |++.+...+ ..+.+.|..|++. +|++.++.+....+|..++..+.+.+.
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            998888766 5777888766554 799999999999999999999998664

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=1.7e-07  Score=86.36  Aligned_cols=326  Identities=14%  Similarity=0.049  Sum_probs=188.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhcccc
Q 013453           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (442)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~  166 (442)
                      .++......++.++.+.+.|+.|.|+.+.++...+....+.+-+-+ -+-++..-.+.|+|.+..+.. -.+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            6777788889999999999999999999999999988887777654 556777889999999999986 88999999999


Q ss_pred             chhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCC-ccccc-ccccC--CcChhHHHHHHHHHHHH--HHHHhhccccC
Q 013453          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSSE-SLFGK--FPYFLPCLCISLFAFGV--TIAAFWLPETL  240 (442)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~gw~-~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~e~~  240 (442)
                      .+.+..++.-+....+.++|..+-..+....+.... ..+-+ ..+..  .......+....+.+..  .+...+.|.+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~  214 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD  214 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence            999999998888888888887666555442221100 00100 00000  00001111111111111  11111222211


Q ss_pred             CCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccC
Q 013453          241 HRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY  320 (442)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (442)
                      .. ..++..+..               ..+..+...+++++++...+...++...+...-+.+.+|..+...   ...+.
T Consensus       215 ~~-~~~~~~~~~---------------~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft---~~~~~  275 (461)
T KOG3098|consen  215 VV-NCKSSSETS---------------FSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFT---RKLGS  275 (461)
T ss_pred             hh-hhhhhcccc---------------HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhh---hhccC
Confidence            10 000000000               111122334567777777666665555444444444444433221   11222


Q ss_pred             Ch-hHHHHHHHHHHHHHHHHHhhHHHHHHH---hhchhHHHHHHHHHHHHHHHHHHHHHHhhch------------hhHH
Q 013453          321 ST-QMVGEVLAITGFSLLVFQLSLYPFLER---ILGPIMVARIAGVLTIPLLTSYPYIAMLSGF------------GLAF  384 (442)
Q Consensus       321 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~  384 (442)
                      +. ...++.....+++.++++. ....+.|   ++|+++.+.++..+..+.+.+.........+            ....
T Consensus       276 n~~~~~ai~~~~~g~g~v~~g~-~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~  354 (461)
T KOG3098|consen  276 NTTYLIAIYSIGIGLGEVIGGL-DFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYY  354 (461)
T ss_pred             cchhHHHHHHHHHhHHHHHHHH-HHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchh
Confidence            22 2345555556777777666 4444443   3567777777776666665554332211110            1133


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhh
Q 013453          385 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  435 (442)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  435 (442)
                      ...+..+..+..=.......+.+..... +++|.++.++.-.-+.++..++
T Consensus       355 ~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  355 LALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHH
Confidence            4455555556666666777788888877 5788888888877777766554

>PRK11043 putative transporter; Provisional

Probab=99.00  E-value=1.1e-08  Score=96.11  Aligned_cols=129  Identities=10%  Similarity=0.034  Sum_probs=98.5

Q ss_pred             hchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHH---hc--cch
Q 013453           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GL--SVN  134 (442)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~--a~~  134 (442)
                      .....|.+.+++|.+..+      .|+......++..++.+..+++.||+|+|+.+....+..+++.+..   ..  .++
T Consensus       222 ~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (401)
T PRK11043        222 WLTGSPFILEQMGYSPAD------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS  295 (401)
T ss_pred             HHHHhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            334567777888998888      8988888889999999999999999999987766555544443322   22  345


Q ss_pred             HHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          135 FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+.+++...+.|++.+...+ ..+...|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            56666667778888888777 4667677765 579999999999888888888888888875

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.99  E-value=2.1e-08  Score=92.38  Aligned_cols=144  Identities=12%  Similarity=0.049  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCc---hhhHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK---PVIIM  117 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr---~~~~~  117 (442)
                      +.++.+++..++.......+...+|.+.++.|.+. +      .+...++..+...++   .++++||.+||   +....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~------~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~  261 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-I------AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIR  261 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-H------HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHH
Confidence            34555666666666666667778899988877664 3      455555555544444   46777776543   33332


Q ss_pred             -HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       118 -~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                       ..++.++.....++..+....++.-.+.|++.....+ ..++.+|.+|++.|+++.|+.+....+|.+++|.+.+.+.
T Consensus       262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       262 AAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence             3444444444445555555545555566666555555 5789999999999999999999999999999999988776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.99  E-value=7e-07  Score=83.49  Aligned_cols=288  Identities=8%  Similarity=0.113  Sum_probs=159.3

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccc-----cchhhhhHHHHHHHHHHHHHHhh-hhhhhhhhcccCCch
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-----REEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKP  113 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~s~~~~~~~~~-~~~~G~l~dr~Grr~  113 (442)
                      .++++...+..|+..+.++    .+-.+.+.+..+.     +.      ..++-+...+...+. .++.+++++|++|++
T Consensus         6 ~~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~   75 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEA   75 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            3445555555555554433    4445566666632     34      888888887776666 899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcc----c---------------------------hHHHHHHHHHHHHhhcchhhH-H-HHHhh
Q 013453          114 VIIMGTASVVIFNTLFGLS----V---------------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYAC  160 (442)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~a----~---------------------------~~~~l~~~r~l~G~~~g~~~~-~-~~~i~  160 (442)
                      ++.+....+....+++++.    +                           +.|..-+..+...+-...... . ..+..
T Consensus        76 lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        76 LFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988777777766666553    1                           122333333444444333333 3 78899


Q ss_pred             hhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcCh----hHHHHHHHHHHHHHHHHhhc
Q 013453          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF----LPCLCISLFAFGVTIAAFWL  236 (442)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  236 (442)
                      |.++.+|-.|.+++++.+.++|..+++.+..++.+.....+..        ..+|.    ....+.++..++.+.+.+++
T Consensus       156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~i~~~~~~~~~~~~~~l  227 (472)
T TIGR00769       156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPG--------VDGWHVSLKNLMVIVICSGLAIILLYWWV  227 (472)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887421111000        11221    12233333334444444444


Q ss_pred             cccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccC
Q 013453          237 PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG  316 (442)
Q Consensus       237 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (442)
                      .+....+ ++.  .+.  ++    .+++++.+.....+.+.++++|.++...+...++...........-......    
T Consensus       228 ~~~~~~~-~~~--~~~--~~----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~----  294 (472)
T TIGR00769       228 NRNVLTD-PRS--YNP--AL----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQ----  294 (472)
T ss_pred             HhcccCC-ccc--cch--hh----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3222111 100  000  00    0000111112234566788899887766666665444433332222111111    


Q ss_pred             cccCChh----HHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          317 GLNYSTQ----MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       317 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                       + -++.    -.|......++..++.+++. +.+.||+|-+....+.-
T Consensus       295 -~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw~~~a~i~P  340 (472)
T TIGR00769       295 -Y-PSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGWLTAALITP  340 (472)
T ss_pred             -C-CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHH
Confidence             1 1222    23444555566666666644 77777777665544433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10133 L-fucose transporter; Provisional

Probab=98.97  E-value=1.3e-08  Score=96.13  Aligned_cols=118  Identities=12%  Similarity=0.038  Sum_probs=96.1

Q ss_pred             HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhh
Q 013453           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL  148 (442)
Q Consensus        69 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~  148 (442)
                      +.+|.++.+      .++....+.++..++.++.|++.||+|||+++..+.++..+..++..+.++.. .+..-.+.|++
T Consensus       288 ~~~g~s~~~------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg  360 (438)
T PRK10133        288 EIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAF  360 (438)
T ss_pred             hcCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHH
Confidence            467999998      99999999999999999999999999999999988887777766666666543 34556788999


Q ss_pred             cchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          149 NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       149 ~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+...| ..+...|..++ +.+.+.++... ..+|..++|.+.|.+.+
T Consensus       361 ~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        361 MSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             HHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH
Confidence            999988 58888888765 46677777764 44678888899998887

>PRK09669 putative symporter YagG; Provisional

Probab=98.95  E-value=3.5e-09  Score=100.71  Aligned_cols=112  Identities=19%  Similarity=0.260  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHhhcchhhHH-HHHhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~  160 (442)
                      .+.+.....+...++.+++++++||+|+|+.+..+.++..+......+  .++.+.+++..++.|++.+...+. .++++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777888899999999999999999999887766654433222  357777888889999998888884 88999


Q ss_pred             hhccc-------cchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       161 ~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      |..+.       ++.|...+..+....+|..+|+.+++.+.+
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88762       234566788888999999999999999987

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.95  E-value=7.7e-09  Score=99.03  Aligned_cols=149  Identities=11%  Similarity=0.037  Sum_probs=106.7

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      +.+..+....++............+.+.+....+...      .+++.+...++..++.+++++++||+|+|+.+.++..
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            3344444444444444444444444444443333444      6777777778899999999999999999999998887


Q ss_pred             HHHHHHHHHhc-----cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhcc-------ccchhhhhhhhhHhhhhHHHHHH
Q 013453          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP  187 (442)
Q Consensus       121 ~~~i~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~  187 (442)
                      +..++.+...+     .++.+.+++.-++.|++.+...+ ..++++|..+       +++.|..++......-+|..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            76666554432     34566777777888998887777 4889998865       33445688999999999999999


Q ss_pred             Hhhhhhcc
Q 013453          188 ALGGFLAQ  195 (442)
Q Consensus       188 ~~~~~l~~  195 (442)
                      .+.|++.+
T Consensus       385 ~i~g~~l~  392 (473)
T PRK10429        385 FFIGVVLG  392 (473)
T ss_pred             HHHHHHHH
Confidence            99999987

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.92  E-value=2.6e-08  Score=92.93  Aligned_cols=147  Identities=19%  Similarity=0.135  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (442)
                      +.+.+++..+..+..+......+|.+.++ ..+...      .........+...+..+++|+++||+|+||++.++.+.
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~  325 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIF  325 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHH
Confidence            34555555555555555455566666554 222222      22233445677889999999999999999999998887


Q ss_pred             HHHHHHHHh-cc-----chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccc---------------------cchhhhhh
Q 013453          122 VVIFNTLFG-LS-----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE---------------------EHQALGLS  173 (442)
Q Consensus       122 ~~i~~~~~~-~a-----~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~---------------------~~r~~~~~  173 (442)
                      ..+...... ..     .+++.+.+..+...++.|.-.. ...++.+.+|+                     ++-|.+.|
T Consensus       326 ~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G  405 (462)
T PRK15034        326 MAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALG  405 (462)
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHH
Confidence            777664322 11     2466666655444444444433 35666666663                     24567788


Q ss_pred             hhhHhhhhHHHHHHHhhhhhcc
Q 013453          174 TVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       174 ~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.++...+|..+-|.+-+...+
T Consensus       406 ~v~a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        406 FISAIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHHHHcccchhhHHHHHHHH
Confidence            9999999998898977777766

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.91  E-value=6.6e-08  Score=87.18  Aligned_cols=143  Identities=30%  Similarity=0.467  Sum_probs=118.6

Q ss_pred             HHHHHHhHhcchhhchhHHHHHHHhcccc--cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           47 WIIVLCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      ....+....+.....+..+.+.++++.+.  ..      .++..+.+.++..++.++.|.++||+|||+.+..+.....+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   81 (338)
T COG0477           8 ALAALLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLL   81 (338)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHH
Confidence            33444444666667778888888887776  36      89999999999999999999999999999888888876666


Q ss_pred             HHHHHhccch--HHHHHHHHHHHHhhcchhhH-HHHHhhhhccc-cchhhhhhhhhH-hhhhHHHHHHHhhhhhcc
Q 013453          125 FNTLFGLSVN--FWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       125 ~~~~~~~a~~--~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~  195 (442)
                      +.++.++..+  .+.+++.|+++|++.+...+ ..+++.|+.|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          82 GTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777665  99999999999999888888 59999999998 789999998888 688899999988888876

>TIGR00788 fbt folate/biopterin transporter

Probab=98.90  E-value=1.1e-08  Score=97.51  Aligned_cols=122  Identities=7%  Similarity=-0.037  Sum_probs=105.7

Q ss_pred             HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc----------chHHHH
Q 013453           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA  138 (442)
Q Consensus        69 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a----------~~~~~l  138 (442)
                      +.+|.++.+      .|.+.....++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            568999999      9999999999999999999999999999999999999999888665321          333445


Q ss_pred             HHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       139 ~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      ...-++.+++.+.... ...++.+..|+++++...++.+...++|..+++.+++.+.+.
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566888888777666 699999999999999999999999999999999999999983

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.89  E-value=3.4e-08  Score=91.92  Aligned_cols=124  Identities=18%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             chhHHH-HHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHH---hc-cchH
Q 013453           61 FPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GL-SVNF  135 (442)
Q Consensus        61 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~-a~~~  135 (442)
                      ....|. +.+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+..+..+..+..+..   .. ..++
T Consensus       214 ~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQN------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGF  287 (377)
T ss_pred             HHcCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            333443 45668989888      9999999999999999999999999999999988876654433322   22 2345


Q ss_pred             HHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHh-hhhHHHHHHHhhh
Q 013453          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTA-WGIGLIIGPALGG  191 (442)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~  191 (442)
                      +.+.++-.+.+.+.+...+ ....+.|..| ++|+++.+..+.. ..+|..+++.+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        288 WALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555444444444444444 4566777766 7899988876543 4466666666543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.3e-07  Score=78.88  Aligned_cols=328  Identities=13%  Similarity=0.056  Sum_probs=171.7

Q ss_pred             HHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHH
Q 013453           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (442)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  129 (442)
                      .++...+.....|....+.+.++....+      +|.+..+.+-..++...+.|-++|+-|||+.-+.-++-+.+++ +.
T Consensus        46 yslmmAgDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iT  118 (454)
T KOG4332|consen   46 YSLMMAGDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-IT  118 (454)
T ss_pred             HHHHHhhhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-Hh
Confidence            3444445566678877788889999998      8888888888888999999999999999997544443333322 23


Q ss_pred             hccchHHHHHHHHHHHHhhcchhhHH--HHHhhhhccccchhhh---hh-hh----hHhhhhHHHHHHHhhhhhcccccc
Q 013453          130 GLSVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIFREEHQALG---LS-TV----STAWGIGLIIGPALGGFLAQPAEK  199 (442)
Q Consensus       130 ~~a~~~~~l~~~r~l~G~~~g~~~~~--~~~i~~~~~~~~r~~~---~~-~~----~~~~~~g~~~g~~~~~~l~~~~~~  199 (442)
                      -.++.+-.++++|++-|+..+....+  .-+++|.-.+  |+.-   ++ .+    ..+..+=.+++.+.+..+.+    
T Consensus       119 KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd----  192 (454)
T KOG4332|consen  119 KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD----  192 (454)
T ss_pred             hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH----
Confidence            44788999999999999998887774  4567776532  3221   11 11    12334445555666666665    


Q ss_pred             CCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccc
Q 013453          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (442)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (442)
                         +++       .+--.||-..+....+. .+.+.---|.-.+..++    ++...              +-+...+.+
T Consensus       193 ---~~s-------lGPVAPFdAAacfLaigmAvil~~W~ENygdps~~----kdllt--------------qf~gaa~ai  244 (454)
T KOG4332|consen  193 ---TFS-------LGPVAPFDAAACFLAIGMAVILSSWSENYGDPSEN----KDLLT--------------QFKGAARAI  244 (454)
T ss_pred             ---Hhc-------cCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhh----HHHHH--------------HhhHhHHHH
Confidence               222       12222333332222222 22221122222111111    11100              011123345


Q ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-chhHHH
Q 013453          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVA  357 (442)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  357 (442)
                      ..++++..+-....++-...+.+     .++..|....+  =...--|.+++.+.++.++++-+..+.+.+.- .-...+
T Consensus       245 aSD~ki~LLG~iqsLFE~smytF-----VFLWTPaLspn--~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ym  317 (454)
T KOG4332|consen  245 ASDEKIALLGAIQSLFEGSMYTF-----VFLWTPALSPN--DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYM  317 (454)
T ss_pred             hcchHHHHHHHHHHHHhhhhhee-----eeeecccCCCC--cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHH
Confidence            55666554444444333222222     23333322211  01112577888788888888875556555432 222334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHH
Q 013453          358 RIAGVLTIPLLTSYPYIAMLS-GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM  425 (442)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  425 (442)
                      .+.+.+..+.+.+........ +......-.+..+..-......+|...-+-++..|++.|++.+-.+.
T Consensus       318 qivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFR  386 (454)
T KOG4332|consen  318 QIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFR  386 (454)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence            444444444433322222111 11111111222222223334566777788888899999988776543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.81  E-value=4.3e-08  Score=93.66  Aligned_cols=153  Identities=8%  Similarity=0.015  Sum_probs=109.9

Q ss_pred             cccch-hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh-hchhHH
Q 013453          279 LKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMV  356 (442)
Q Consensus       279 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  356 (442)
                      +++|+ ++......++..+.+++...+++.|+...   .++|++..+++...+...++..++.+ .++++.|| +|||+.
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~---~~lg~s~~~ag~~~~~~~~~~~~~~~-~~G~laDr~~G~~~~   81 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ---AGLGFSQEQAFIIFGAYSALVYLLTS-VGWWFGDRVWGTKKT   81 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhcchHHH
Confidence            34544 45555556665677777888888887532   13789999999999999999999998 66777776 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh---hhhHHHHHHHHHHHHHHh
Q 013453          357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD---QRGAANGIAMTGMSLFKA  433 (442)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~  433 (442)
                      +..+..+..++..++.+..     ..+. ..+...+.+.+.....+....++++.+|++   +|+++.++.+...++|.+
T Consensus        82 l~~~~~~~~~g~~~~~~~~-----~~~~-~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~  155 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSI-----YPDL-IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF  155 (475)
T ss_pred             HHHHHHHHHHHHHHHHhcc-----cHhH-HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence            9999988888877665532     1111 222222223333345566777888888765   488899999999999999


Q ss_pred             hhcccCCC
Q 013453          434 AGPAGGGA  441 (442)
Q Consensus       434 ~gp~i~G~  441 (442)
                      +||.+.|+
T Consensus       156 ig~~l~g~  163 (475)
T TIGR00924       156 ISPLLAGV  163 (475)
T ss_pred             HHHHHHHH
Confidence            99998764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.80  E-value=6.7e-08  Score=91.21  Aligned_cols=150  Identities=10%  Similarity=0.028  Sum_probs=105.6

Q ss_pred             cchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-chhHHHHH
Q 013453          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARI  359 (442)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  359 (442)
                      .+.++..........+.+++...+++.|+...     +|++..+++.+.........++.+ .++++.||+ |||+.+..
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-----lgls~~~a~~i~~~~~~~~~l~~l-igG~LaDRilGrrr~ili   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-----LKYDDNHAYELFSAYCSLVYVTPI-LGGFLADKVLGNRMAVML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccCcHHHHHH
Confidence            34456656666666777777878888887643     689999999999888888888877 778888887 99999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh--hhhHHHHHHHHHHHHHHhhhcc
Q 013453          360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPA  437 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~gp~  437 (442)
                      +.++..++..++.....  . .... .....+ ...+.....+...++++|.+|++  +|.++.++.....++|+.++|.
T Consensus        82 G~il~~lg~lll~~~~~--~-~~~~-~l~l~l-i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         82 GALLMAIGHVVLGASEI--H-PSFL-YLSLAI-IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHhhc--c-hhHH-HHHHHH-HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            88888777654432110  0 1111 111111 11112223355677889999875  7999999999999999999999


Q ss_pred             cCCC
Q 013453          438 GGGA  441 (442)
Q Consensus       438 i~G~  441 (442)
                      +.|+
T Consensus       157 l~g~  160 (493)
T PRK15462        157 ACGY  160 (493)
T ss_pred             HHHH
Confidence            8875

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.76  E-value=1.2e-07  Score=91.20  Aligned_cols=157  Identities=8%  Similarity=-0.042  Sum_probs=105.2

Q ss_pred             cccccccch-hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh-hc
Q 013453          275 KKSLLKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LG  352 (442)
Q Consensus       275 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  352 (442)
                      ..+.+++|+ ++......++..+.++....+.+.|+.+     ++|++..+++............... .++++.|| +|
T Consensus        13 ~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-----~lg~s~~~a~~~~~~~~~~~~~~~~-~~G~LaDr~~G   86 (500)
T PRK09584         13 SLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVK-----QLGMSEADSITLFSSFSALVYGLVA-IGGWLGDKVLG   86 (500)
T ss_pred             ChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence            345566664 7777777777777777777888887753     3788888887777665544444334 67888888 59


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh--hhhHHHHHHHHHHHH
Q 013453          353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSL  430 (442)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~  430 (442)
                      ||+.+..+..+..++..++.+...    ..+ .+.+...+.+.+.....+....+..+.+|++  ++..+.++.++..++
T Consensus        87 ~r~~~~~g~~~~~ig~~l~~~~~~----~~~-~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i  161 (500)
T PRK09584         87 TKRVIMLGAIVLAIGYALVAWSGH----DAG-IVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI  161 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcc----cHH-HHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence            999999988888777665554311    111 1222222223333334566667888888754  355688888999999


Q ss_pred             HHhhhcccCCCC
Q 013453          431 FKAAGPAGGGAL  442 (442)
Q Consensus       431 g~~~gp~i~G~l  442 (442)
                      |.++||.+.|++
T Consensus       162 G~~~gp~i~g~l  173 (500)
T PRK09584        162 GSFFSMLATPWL  173 (500)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.75  E-value=1.7e-07  Score=86.83  Aligned_cols=144  Identities=14%  Similarity=0.074  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHH
Q 013453          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (442)
                      ++...+..++.......+..+.|.++.     +++|+|+.+.+++.+...++..++.+ ..+++.||+|||+.+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIK-----DDLGLSTAQLGNLVAVPVLAGAVLRI-ILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHH-----HHhCCCHHHhhHhhHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence            455555555555555555555553332     44899999999999999999999998 677777888999999998888


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      ..++..+..+...    ..+. +.+..++.+... +..+....++.+..|+++|+++.++.....++|..+++.+.
T Consensus        77 ~~i~~~~~~~~~~----~~~~-~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  146 (366)
T TIGR00886        77 LAIPCLWAGLAVQ----SYSV-LLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM  146 (366)
T ss_pred             HHHHHHHHHHHhh----hHHH-HHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            8888776655431    1121 222223333332 33445667888899999999999999877777777766554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.9e-07  Score=86.04  Aligned_cols=149  Identities=12%  Similarity=0.207  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +.+..+++..++.....+........+.+. +|.++.+      ..+.......+..++.+++.++++|+|+|+++.++.
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~  309 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL  309 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence            344455555666666666666655555432 3444444      677777888888888999999999999999999999


Q ss_pred             HHHHHHHHHHhccc--hHHHHHHHHHHHHhhcchhhHH-HHHhhhhcc-------ccchhhhhhhhhHhhhhHHHHHHHh
Q 013453          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPAL  189 (442)
Q Consensus       120 ~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~  189 (442)
                      ++..++.++..+.+  +.+.+++..++.+++.+...+. .++++|..+       ++.-|...+......=+|.+++..+
T Consensus       310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999888865  7888889999999998888774 777777654       2334667778888888999999988


Q ss_pred             hhhhcc
Q 013453          190 GGFLAQ  195 (442)
Q Consensus       190 ~~~l~~  195 (442)
                      .++...
T Consensus       390 ~g~~L~  395 (467)
T COG2211         390 PGWILG  395 (467)
T ss_pred             HHHHHH
Confidence            888887

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.75  E-value=4.2e-07  Score=85.13  Aligned_cols=125  Identities=14%  Similarity=0.065  Sum_probs=92.8

Q ss_pred             HHHHHH-HhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH-HHHHHHHHHhc--cchHHHHH
Q 013453           64 LYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA-SVVIFNTLFGL--SVNFWMAV  139 (442)
Q Consensus        64 ~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~-~~~i~~~~~~~--a~~~~~l~  139 (442)
                      .+.+.+ .+|.+..+      .+++.....++..++.++.+++.||++++........ ...+.......  ..+.+.+.
T Consensus       230 ~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK11652        230 SGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLL  303 (394)
T ss_pred             ChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            344444 48888888      8999999999999999999999999984333222222 22222222222  34567778


Q ss_pred             HHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          140 LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       140 ~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +..++.|++.+...| ..++..|..| ++++...++.+....+|..+++.+++.+.+
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        304 VPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            888999999888888 4888888886 578999999999999999999999988865

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.74  E-value=4.2e-08  Score=89.90  Aligned_cols=143  Identities=22%  Similarity=0.339  Sum_probs=123.4

Q ss_pred             HHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHH
Q 013453           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  126 (442)
                      .+...+.+.+...+...+--..||++..+.-      .|.....-..+-.+.-++.+++.+|+|+-+++..++.+..+=.
T Consensus       377 f~~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf  450 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRF  450 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHH
Confidence            3444455555566666666778899877777      7888888888888999999999999999999999999999999


Q ss_pred             HHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhh-hHhhhhHHHHHHHhhhhhcc
Q 013453          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       127 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.....+|.|+.+..-+++|+..+..+. +.+|+++..||+-|..+.++. ....++|--+|.++||.+.+
T Consensus       451 ~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~  521 (618)
T KOG3762|consen  451 LYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE  521 (618)
T ss_pred             HHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence            9999999999999999999999888887 599999999999999999966 55678999999999999998

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.70  E-value=5.3e-07  Score=84.55  Aligned_cols=147  Identities=5%  Similarity=-0.110  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHH
Q 013453          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (442)
                      +......++++.+.........|.+      ++++|.+..+.|.+.+...++..++++ ..+++.||+|||+.+..+..+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~------~~~~~~s~~~~g~l~s~~~~g~~i~~~-~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF------QQAFTLTAFQAALVQSAFYGGYFIMAI-PAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence            3444445555554443333444433      345799999999999999999999998 677788888999999999988


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      ..++..+.......+  ..+ ......++.+.+.....+....++.+..|++++++..++.+...++|..++|.+.+
T Consensus        78 ~~~g~~l~~~~~~~~--~~~-~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        78 YALGAFLFWPAAEIM--NYT-LFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             HHHHHHHHHHHHhhc--cHH-HHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876654332211  122 23333344444445556666777778889999999999999999999999988754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.2e-06  Score=76.93  Aligned_cols=147  Identities=17%  Similarity=0.125  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTAS  121 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~  121 (442)
                      -+.+.+-.-+..+..++....+|.+..|-|.|..+      .|++.+...+.+...++....+.+| -++|+..+....+
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            34444444556667778888999999999999999      9999999999999999999999996 4688888888888


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhcccc-chhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE-HQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       122 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +.++.+.+.+.+.-..+.- -++.|+|.|...| +..++.+..+.. +-++-.++.+....+=..+||.+.|++-|.
T Consensus       284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa  359 (395)
T COG2807         284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA  359 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh
Confidence            8888888888765443333 4899999888888 688888777644 445555677777777778899999999984

>PRK11462 putative transporter; Provisional

Probab=98.70  E-value=3.7e-07  Score=86.98  Aligned_cols=112  Identities=14%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcchhhHH-HHHhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~  160 (442)
                      .+.+...+.++..++.+++++++||+|+|+++..+..+..+..++..+.+  +...+++.-++.|++.+...+. .++++
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a  344 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS  344 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888899999999999999999999988765554444333333322  2334445556678776666663 67777


Q ss_pred             hhcc-------ccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          161 EIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       161 ~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      |..+       +++.|..++......-+|..+++.+++.+.+
T Consensus       345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665       3334555677778889999999999999887

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.6e-07  Score=88.26  Aligned_cols=174  Identities=13%  Similarity=0.220  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCc--------h
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--------P  113 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--------~  113 (442)
                      ++.+++..+....+...+...+|.+.+| +|.+..+      .|++.++..+...+..+++|.++||.-+|        |
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            5567788888888888888889988765 7999999      99999999999999999999999987552        2


Q ss_pred             h-hHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHhh-cchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHh
Q 013453          114 V-IIMGTASVVIFNTLFGLSVNFWM-AVLTRFLLGSL-NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (442)
Q Consensus       114 ~-~~~~~~~~~i~~~~~~~a~~~~~-l~~~r~l~G~~-~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (442)
                      . -.++....++..+..++.++-.. ..+.-+..+.+ .|...+ ...-..|. .+++-+..+++.+....+...++|.+
T Consensus       334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~  412 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLL  412 (466)
T ss_pred             HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 23445555555566666553111 11122222222 222222 12222332 45778999999999999999999999


Q ss_pred             hhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc
Q 013453          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (442)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (442)
                      .+.+.+ .+   +         +..|+.+|.+.+++.++..+.+.+.
T Consensus       413 vg~~~~-~~---t---------~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  413 VGIIVT-DN---T---------REEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eeeEeC-CC---C---------HHHHHHHHHHHHHHHHHhchheeEe
Confidence            999995 11   1         4456777788887777665444333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=7.6e-08  Score=85.04  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=119.7

Q ss_pred             HhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC--CchhhHHHHHHHHHHHHH
Q 013453           52 CTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTL  128 (442)
Q Consensus        52 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~i~~~~  128 (442)
                      .........-|.++.+ .|++..+.-+      .|...--..+.+.++..+.|.++||++  |-..-..+++..++....
T Consensus       281 ~~n~~lafLePtlslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~  354 (464)
T KOG3764|consen  281 FSNSSLAFLEPTLSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGP  354 (464)
T ss_pred             hccchHHHhCcccHHHHHHhccCCCcc------eeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhch
Confidence            3444555666777764 4666744446      888888888999999999999999999  544445667777777778


Q ss_pred             HhccchHHHHHHHHHHHHhhcchhhHH-HH---Hhhhhcccc---chhhhhhhhhHhhhhHHHHHHHhhhhhccccccCC
Q 013453          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KA---YACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (442)
Q Consensus       129 ~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~---~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (442)
                      ..+++++.++.+-++..|++.+....+ ..   ++.|.-..+   .-|...++...++++|..+||.++|.+.+      
T Consensus       355 iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~------  428 (464)
T KOG3764|consen  355 IPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE------  428 (464)
T ss_pred             hHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee------
Confidence            889999999999998888876665442 33   444433333   45788899999999999999999999998      


Q ss_pred             CcccccccccCCcChhHHHHHHHHHHHHHHHH
Q 013453          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (442)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (442)
                                +++|++...+.++..++..-+.
T Consensus       429 ----------~iGF~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  429 ----------AIGFEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             ----------ehhHHHHHHHHHHHHHHHHHHH
Confidence                      6677776677777776654333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.67  E-value=2.9e-08  Score=89.29  Aligned_cols=191  Identities=15%  Similarity=0.069  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhh--hhHHHHHHHHH-HHHHHhhhhhhhhhhcccCCchhhHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI--GSYAGYVGSSF-MFGRALTSVFWGLVADRYGRKPVIIM  117 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~s~~-~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (442)
                      ++++..+..+|+.-+..+..+.....+.+..+..+.+.+.  .........+. ..++..+-.+...+.|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            3444556677777777777777788888888877665322  11122222222 23344477788899999999999999


Q ss_pred             HHHHHHHHHHHHhccch-H---HHHHHHHHHHHhhcchhhH---HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhh
Q 013453          118 GTASVVIFNTLFGLSVN-F---WMAVLTRFLLGSLNGLLGP---IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~~-~---~~l~~~r~l~G~~~g~~~~---~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                      +.+++.+..+..+...| .   ..+++...+..+ .+.+.|   ...+-+|.+|.+-|+..-|+..+..-+|+++|...-
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~f-f~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F  462 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFF-FGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF  462 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHH-HHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh
Confidence            99999999999998776 2   222222223332 223333   345668999999999999999999999999999888


Q ss_pred             hhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCC
Q 013453          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH  243 (442)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  243 (442)
                      .++.+..  ++.         ..+.+..+++.+.+.++..+..+++||+..+.
T Consensus       463 ~~~t~~~--yp~---------~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~  504 (538)
T KOG0252|consen  463 LYLTDHN--YPP---------NIGVRNVFIILAGCMLLGILFTLLIPETKGKS  504 (538)
T ss_pred             hHhhhcc--CCc---------cccchHHHHHHHHHHHHhHheeEEeecccccC
Confidence            8887633  222         33455666888888888888888899887654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.66  E-value=8.6e-07  Score=81.57  Aligned_cols=153  Identities=15%  Similarity=0.176  Sum_probs=99.9

Q ss_pred             cccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHH
Q 013453          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (442)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (442)
                      +++.++..........+.........+++ .|     +.++++-.+...|........+.++.-+ ...++.++.|+.++
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFL-fW-----Hled~~~~~~LfGv~~a~~~~gEI~~~f-fs~klI~kiGHv~v  438 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFL-FW-----HLEDLGGIKTLFGVVSALCHAGEILFYF-FSFKLIEKIGHVNV  438 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHH-HH-----HHhhcCCcceeeeehhhhhccchHHHHH-HHHHHHHHhcccce
Confidence            45566665444333333333322222222 22     2344565666667666665666666655 66677788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHH-HHHHhhh
Q 013453          357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAG  435 (442)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g  435 (442)
                      +.+++.....=++.+.+..+     .| .++..-++.+.....++....++++...||+.+.++.|+..... .+|...|
T Consensus       439 ~~lgLa~~~~Rf~~~S~L~n-----~W-~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G  512 (618)
T KOG3762|consen  439 MYLGLACNVGRFLYYSYLQN-----PW-MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLG  512 (618)
T ss_pred             eeehhhHHHHHHHHHHHhcC-----ch-heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence            98888887777777666532     22 24444555556667788888899999999999999999986654 5788888


Q ss_pred             cccCCCC
Q 013453          436 PAGGGAL  442 (442)
Q Consensus       436 p~i~G~l  442 (442)
                      ++|+|.+
T Consensus       513 slIGG~~  519 (618)
T KOG3762|consen  513 SLIGGFV  519 (618)
T ss_pred             hhhhhhh
Confidence            8888753

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.66  E-value=7.7e-08  Score=65.94  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=74.0

Q ss_pred             hHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc
Q 013453           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (442)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a  132 (442)
                      .++++..+.|.+|.+++|.++|.++      .|++.+...+||.+|.+...++.++..+++.+..+.+...+..+.+++.
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999      9999999999999999999999999888999999999999999999998


Q ss_pred             chHHHH
Q 013453          133 VNFWMA  138 (442)
Q Consensus       133 ~~~~~l  138 (442)
                      ++++..
T Consensus        78 ~~~~~w   83 (85)
T PF06779_consen   78 HSFWLW   83 (85)
T ss_pred             hchHHH
Confidence            887654

Note that many members are hypothetical proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.65  E-value=5.2e-07  Score=80.26  Aligned_cols=147  Identities=16%  Similarity=0.132  Sum_probs=119.9

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .+++..-.++.|+...........++.+.+| .|.++.+      .....+.+..+..+|.+..-++..|+...|.+.+.
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~  308 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFY  308 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3445556666777777777788888888888 7778888      89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .++..+-++..+++++...++.. ++.|+..+..+| +.+...+..|  +-....+..-.+..+|.++.|.+.|++.|
T Consensus       309 a~~~ill~~~~~l~~g~v~~~~l-~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d  383 (422)
T COG0738         309 ALIAILLLLAVALIGGVVALYAL-FLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHH-HHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHH
Confidence            99888888889999986655544 788888899888 5888888888  33344455556667899999999999998

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.62  E-value=4.1e-07  Score=87.06  Aligned_cols=149  Identities=7%  Similarity=-0.051  Sum_probs=106.8

Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh-hchhHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA  360 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  360 (442)
                      +.++......+.-.+.+++...+++.|+..     ++|++..+++.+.........+..+ .++++.|| +|||+.+..+
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~-----~lg~~~~~a~~i~~~~~~~~~~~~~-~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVK-----QLGFSQEQAFITFGAFAALVYGLIS-IGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHHHHHHHh-hHHHhhhhccchHHHHHHH
Confidence            346666666666777777777888887764     3788998888888777766666666 77888887 9999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh--hhhHHHHHHHHHHHHHHhhhccc
Q 013453          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      .++..++.....+.....    . .+.+.....+.+.....+...+++.|.+|++  +|+++.++.....++|.++||.+
T Consensus        88 ~~~~~~g~~~~~~~~~~~----~-ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l  162 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKP----D-LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL  162 (489)
T ss_pred             HHHHHHHHHHHHHhccch----h-HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence            999888877666542111    1 1112222223344445567788899999877  45889999999999999999988


Q ss_pred             CCC
Q 013453          439 GGA  441 (442)
Q Consensus       439 ~G~  441 (442)
                      +|+
T Consensus       163 ~g~  165 (489)
T PRK10207        163 APV  165 (489)
T ss_pred             HHH
Confidence            775

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.60  E-value=2e-06  Score=77.26  Aligned_cols=172  Identities=17%  Similarity=0.144  Sum_probs=131.1

Q ss_pred             HHhHhcchhhchhHH-HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-ccCCchhhHHHHHHHHHHHHH
Q 013453           51 LCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTL  128 (442)
Q Consensus        51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d-r~Grr~~~~~~~~~~~i~~~~  128 (442)
                      ++..++.++.-.++. .=.+-||.+..|      ..-++.....|..++....|++.. |.++|+.-.+++....++..+
T Consensus       218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l  291 (403)
T PF03209_consen  218 FLGTLAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL  291 (403)
T ss_pred             HHHHHHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            334444455556663 335679999999      899999999999999999999888 677888888888877777655


Q ss_pred             H---hccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcc
Q 013453          129 F---GLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (442)
Q Consensus       129 ~---~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (442)
                      .   +...+.+.+...-++.|++.|.+.. +.+...|...+++.|..+|.+.....++..+|..+++.+.|........ 
T Consensus       292 ii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~-  370 (403)
T PF03209_consen  292 IILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN-  370 (403)
T ss_pred             HHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence            4   3456788999999999999999998 5899999999999999999999999999999999999998743221100 


Q ss_pred             cccccccCCcChhHHHHHHHHHHHHHHHHh
Q 013453          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (442)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (442)
                        +  - ..+|-.+|.+-++..++.+....
T Consensus       371 --~--~-~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  371 --S--P-ALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             --C--c-chHHHHHHHHHHHHHHHHHHHHH
Confidence              0  0 34566666776666665554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.56  E-value=6.4e-10  Score=106.18  Aligned_cols=163  Identities=20%  Similarity=0.279  Sum_probs=102.6

Q ss_pred             cchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHh--c--
Q 013453           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L--  131 (442)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--  131 (442)
                      +........+.+.++.+.++.. .    ...+   ..+...++.++...+.||+|||++++.+..+.+++.+..+  .  
T Consensus       268 g~~~~~~~~~~i~~~~~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~  339 (451)
T PF00083_consen  268 GINFIFYYSPSIFENAGISNSF-L----ATLI---LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL  339 (451)
T ss_pred             cccccccccccccccccccccc-c----cccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344445557777777777652 0    2322   2244456666777999999999999999988888887764  1  


Q ss_pred             -cch-----HHHHHHHHHHHHhh-cchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCc
Q 013453          132 -SVN-----FWMAVLTRFLLGSL-NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (442)
Q Consensus       132 -a~~-----~~~l~~~r~l~G~~-~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (442)
                       .++     ...+... .+...+ .....+ ...+..|.+|.+.|+++.++......++..+++.+...+.+.       
T Consensus       340 ~~~~~~~~~~~~i~~~-~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------  411 (451)
T PF00083_consen  340 GVSSSSWWSILSIVFL-ALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-------  411 (451)
T ss_pred             ccccccccccccceee-eecccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence             111     1222222 222222 212334 468889999999999999999999999999888887777751       


Q ss_pred             ccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCC
Q 013453          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (442)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (442)
                      .+        .+.......+...+...+..+++||++..
T Consensus       412 ~~--------~~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  412 LG--------GWGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cc--------ccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            11        01111233333444445667889998754

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.55  E-value=4.3e-06  Score=77.19  Aligned_cols=118  Identities=12%  Similarity=0.030  Sum_probs=97.0

Q ss_pred             CcccCChhH-HHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 013453          316 GGLNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  394 (442)
Q Consensus       316 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (442)
                      +++|++..+ .|.+...+..+..+..+ .++++.||+|.|+++..+.+.-.+...+.++...      ...+.+.-++.|
T Consensus        54 ~elglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S------l~~L~i~R~llG  126 (511)
T TIGR00806        54 TVLNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS------VWHMQLMEVFYS  126 (511)
T ss_pred             HHcCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            458999999 99999999999999988 8888889999999999999888888888777532      223444445555


Q ss_pred             HHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          395 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      .+..... ....++.+.+|+++|+++.|+.+....+|.+++++++++
T Consensus       127 vaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       127 VTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555 788888889999999999999999999999999987653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.50  E-value=2.6e-05  Score=71.62  Aligned_cols=370  Identities=13%  Similarity=0.083  Sum_probs=183.9

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHH--hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-----ccCCchhhH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVII  116 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d-----r~Grr~~~~  116 (442)
                      ..+.+..++++...+.....+|.+.++  -+.+.+|      .+...-+ ...+ -.-++|.++.|     |+||||..+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q------~~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQ------QAIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhH------heeeeee-echh-HHHHhhhhhhhhhcccccCCcchhh
Confidence            456667888888888777788999888  6777776      4432211 1111 12335555555     899999876


Q ss_pred             HHH-HHHHHHHHHHhccc----------------------h--HHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhh
Q 013453          117 MGT-ASVVIFNTLFGLSV----------------------N--FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQAL  170 (442)
Q Consensus       117 ~~~-~~~~i~~~~~~~a~----------------------~--~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~  170 (442)
                      +-. .+.++..+..+...                      +  ...+....++.=+-.+.... +-.+.-....+++++.
T Consensus        75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~  154 (544)
T PF13000_consen   75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGY  154 (544)
T ss_pred             hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcch
Confidence            532 33333333222111                      1  11222222233333344433 3455555567788888


Q ss_pred             hhhhhhHhhhhHHHHHHHhhhhhccccc------cCCCcccccccccCCcChhHHHHHHHHH-HHHHHHHhhccccCCCC
Q 013453          171 GLSTVSTAWGIGLIIGPALGGFLAQPAE------KYPNLFSSESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPETLHRH  243 (442)
Q Consensus       171 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~------~~~~~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~  243 (442)
                      +......+.++|..++..+--.+-+..-      ..+.-.|.-..   .+| .  .+-+... ++...+.++-+|.+..+
T Consensus       155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl---~~y-l--~fwg~~~l~~T~~v~~~k~E~~~~~  228 (544)
T PF13000_consen  155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTL---SGY-L--KFWGWVFLIVTILVAFFKKEKPHSE  228 (544)
T ss_pred             HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeH---HHH-H--HHHHHHHHHHHHHHheEeecccccc
Confidence            8877777777777776655444332100      00111111000   011 1  1122222 22333444455654322


Q ss_pred             CCCC-cc---chhhhhhh--hhhhhh--hhhhh---cccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 013453          244 NDDD-DS---CDVSYDAL--ESASAE--VKEEE---GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP  312 (442)
Q Consensus       244 ~~~~-~~---~~~~~~~~--~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (442)
                      ...+ +.   .+...++.  +.++++  .+++.   ++.-+...+++|-|++..+.+.....-..+..-.....+=+.  
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLl--  306 (544)
T PF13000_consen  229 SLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLL--  306 (544)
T ss_pred             cCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHH--
Confidence            1111 00   00000000  000000  00000   111123455677888887777777666665555544444333  


Q ss_pred             cccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhch--------------------------hHHHHHHHHHHHH
Q 013453          313 KKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP--------------------------IMVARIAGVLTIP  366 (442)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~  366 (442)
                          +.|++-++.+.+..+..=..++....++++...+...                          .+....++..-.+
T Consensus       307 ----EkG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~  382 (544)
T PF13000_consen  307 ----EKGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLV  382 (544)
T ss_pred             ----HcCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHH
Confidence                2588888877776665556666666566665543210                          0111112111111


Q ss_pred             HHHHH----HHHHHhh--chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHh
Q 013453          367 LLTSY----PYIAMLS--GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA  433 (442)
Q Consensus       367 ~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  433 (442)
                      ..++.    ...+...  +...+..++...++..+.....+....+.-+++.+|..=|+.+.+.|++.++|+-
T Consensus       383 ~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt  455 (544)
T PF13000_consen  383 AALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT  455 (544)
T ss_pred             HHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC
Confidence            11111    0111001  1224444555556666666677777888888999999999999999999999874

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.50  E-value=2.6e-06  Score=66.88  Aligned_cols=107  Identities=21%  Similarity=0.191  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhcccc
Q 013453           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (442)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~  166 (442)
                      .++......+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-++.|++.+..+++ ..++.+..+++
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            355566677888889999999999999999999988655544 4567888999999999999999996 78999999999


Q ss_pred             chhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +|++..+++-.....+.++|.++.-.+.+
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988888888888887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.50  E-value=3.2e-06  Score=79.59  Aligned_cols=147  Identities=9%  Similarity=-0.005  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      .++...+..++............|.+.++ +|.+..+      .++.......+..++..+.+++.+|..+++.......
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  292 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP  292 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence            34433333333333334444455766554 5899888      8998888888888888888887655555444332222


Q ss_pred             HHHHHHHHHh-----ccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          121 SVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       121 ~~~i~~~~~~-----~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                      +..++.++..     ..++++..++..++.++|.+...|. .+ .+..-.+..+|++.++.+.....+...++..++++.
T Consensus       293 ~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~-~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~  371 (413)
T PRK15403        293 IQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR-FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLW  371 (413)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH-HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222     2234444567888888888887774 43 222222335799999999988888999999999887


Q ss_pred             c
Q 013453          195 Q  195 (442)
Q Consensus       195 ~  195 (442)
                      +
T Consensus       372 ~  372 (413)
T PRK15403        372 F  372 (413)
T ss_pred             H
Confidence            5

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.49  E-value=4.7e-07  Score=61.78  Aligned_cols=71  Identities=23%  Similarity=0.529  Sum_probs=61.8

Q ss_pred             HHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      +-...++.....+...|.+|.+.++.|.+..+      +|.+.++..+...++.+++|.++||+++++..+....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34456666777788899999999999999999      999999999999999999999999999998887765543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.43  E-value=1.1e-05  Score=76.13  Aligned_cols=187  Identities=16%  Similarity=0.050  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHH-H-Hhcccccchh---hhh-HHHHHHHHHHHHHHhhhhhhhhhhcccCC-ch
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMI-K-DFQIAKREED---IGS-YAGYVGSSFMFGRALTSVFWGLVADRYGR-KP  113 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---~~~-~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~  113 (442)
                      +.+..+++..++..++...+......+. + -|+.++.+.+   .+. .-.+....+.+...+.+++..++.+|+|+ |+
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~  337 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            3455677778887777666655554443 2 2444432211   110 12233444555555777888899999995 67


Q ss_pred             hhHHHHHHHHHHHHHHhccch---------------------HHHHHHHHHHHHhhcchhhHH-HHHhhhhccc--cchh
Q 013453          114 VIIMGTASVVIFNTLFGLSVN---------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQA  169 (442)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~a~~---------------------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~--~~r~  169 (442)
                      +..++.++.+++.+...+.++                     .+..++.-.+.|+..+..... ++++++..++  ++.|
T Consensus       338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G  417 (477)
T TIGR01301       338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG  417 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence            778888888888777765432                     366777888999988887775 8999999985  4559


Q ss_pred             hhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCC
Q 013453          170 LGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLH  241 (442)
Q Consensus       170 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~  241 (442)
                      ..+|+++.+..+..++..+..|.+.+       .+|-+.       ...+.+.++..+++ +...+.+|++++
T Consensus       418 ~~mgilN~~I~lpQii~sl~~g~~~~-------~~g~~~-------~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       418 LSMGVLNLAIVIPQIIVSLGSGPWDQ-------LFGGGN-------LPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH-------HcCCCC-------eeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999988888665       233221       22335556665555 445666777653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.37  E-value=1.3e-06  Score=68.30  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 013453          332 TGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA  411 (442)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (442)
                      ..++..++.+ ..+++.||.+||+....+.....+.........     ..+. ........+.......+.......|.
T Consensus         7 ~~~~~~~~~~-~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         7 YALGQLIYSP-LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----NITV-LIIARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             ehhHHHHHHh-hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----cHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4566677777 566677888999988887777776665554431     1222 22233344444455667788889999


Q ss_pred             CChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          412 VDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       412 ~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      .|+++|+++.++.+....+|..++|.+.|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  109 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLLGPPLGGV  109 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHHhHHhHHH
Confidence            999999999999999999999999988774

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.31  E-value=0.00073  Score=65.40  Aligned_cols=140  Identities=13%  Similarity=0.091  Sum_probs=104.7

Q ss_pred             hhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHHHHHHHHHHHHHhccc---
Q 013453           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSV---  133 (442)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~a~---  133 (442)
                      +.....+..+.++++.+...      +.-..+.+.-......+.+++++|- +||-+++.++.++..++..+..++.   
T Consensus        55 g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~  128 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIP  128 (571)
T ss_pred             cchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33456667778899998877      7778888888888888999999997 5898999999888888765443311   


Q ss_pred             -------------------h---HHHHHHHHHHHHhhcchhhHH-HHHhhhhcc---ccc---hhhhhhhhhHhhhhHHH
Q 013453          134 -------------------N---FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---EEH---QALGLSTVSTAWGIGLI  184 (442)
Q Consensus       134 -------------------~---~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~---~~~---r~~~~~~~~~~~~~g~~  184 (442)
                                         +   ...++.+.-+..+|.|..-|+ .++-+|.++   +++   +...+.++....+.|..
T Consensus       129 ~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l  208 (571)
T KOG1237|consen  129 ALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGAL  208 (571)
T ss_pred             hcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHH
Confidence                               1   134566666777788888885 889999998   322   23667888999999999


Q ss_pred             HHHHhhhhhccccccCCCcccccccc
Q 013453          185 IGPALGGFLAQPAEKYPNLFSSESLF  210 (442)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~  210 (442)
                      ++..+--+.-+       ..||...+
T Consensus       209 ~a~t~~vyiq~-------~~~w~lgf  227 (571)
T KOG1237|consen  209 LAQTVLVYIQD-------NVGWKLGF  227 (571)
T ss_pred             HHHHHHHhhhh-------cccceeec
Confidence            99888888766       56665544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.28  E-value=2.7e-05  Score=75.52  Aligned_cols=179  Identities=15%  Similarity=0.152  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (442)
                      ...+.+..|-...+.+......+.+.++.+.+.+.       .+...+..+...++..+...+.||+|||+.++.+...+
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m  369 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGM  369 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHH
Confidence            33555666666677788888888888888877542       23334444555666667799999999999999999999


Q ss_pred             HHHHHHHhccchH-----------HH--HHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHH
Q 013453          123 VIFNTLFGLSVNF-----------WM--AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (442)
Q Consensus       123 ~i~~~~~~~a~~~-----------~~--l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (442)
                      .++.++.+.....           ..  +...-+..........+ ...+.+|.+|.+-|+++.++......+...+-..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~  449 (513)
T KOG0254|consen  370 SICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISF  449 (513)
T ss_pred             HHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHH
Confidence            9999887753211           11  11112222222223334 3568899999999999988876666655544433


Q ss_pred             hhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHH-HHHhhccccCCCC
Q 013453          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRH  243 (442)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~  243 (442)
                      ....+.+       ..++..        ..+...++..+... ....++||++...
T Consensus       450 ~~~~~~~-------~~~~~~--------~f~~f~~~~~~~~~~fv~~~~pETkg~s  490 (513)
T KOG0254|consen  450 FFPFITE-------ALGIGG--------TFGYFGGICLLSLIIFVFFFVPETKGLT  490 (513)
T ss_pred             HHHHHHH-------hccccc--------hHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence            3333332       111111        11133444444444 5677889986543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.27  E-value=1.2e-05  Score=70.09  Aligned_cols=317  Identities=14%  Similarity=0.064  Sum_probs=169.9

Q ss_pred             HHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHHHHHhhhhccccchhhh
Q 013453           92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALG  171 (442)
Q Consensus        92 ~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~  171 (442)
                      .-.+.+.-.+.=.+.|..-.|++++.-.+...+...+.-+.++.+.+=+.-+..|...+.-..-++++=+..+++++.++
T Consensus        52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrv  131 (433)
T KOG3810|consen   52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRV  131 (433)
T ss_pred             hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHH
Confidence            34445555566678899989999998888888888889999999999999999888766655568899999999999999


Q ss_pred             hhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccch
Q 013453          172 LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD  251 (442)
Q Consensus       172 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  251 (442)
                      .+...++.-.|...|..++..+....              ...+...-.+......+......++|..++..-.++++.+
T Consensus       132 t~y~RaA~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~  197 (433)
T KOG3810|consen  132 TGYCRAAFLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDK  197 (433)
T ss_pred             HHHhHHHHHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccccc
Confidence            99999999999999999999888622              2233333344433334445556677766533211111111


Q ss_pred             hhhhhhhhhhhhh--hh----hhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHH-HHhcCCcccCcccCChhH
Q 013453          252 VSYDALESASAEV--KE----EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFS-LWANSPKKLGGLNYSTQM  324 (442)
Q Consensus       252 ~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  324 (442)
                      ....+.++...+.  .+    ....-.....+..+||.+..-.+...+..+.+....++.- +|-...     -+-....
T Consensus       198 ~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-----~~~~~vy  272 (433)
T KOG3810|consen  198 ISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA-----PNPANVY  272 (433)
T ss_pred             ceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC-----CCchhhh
Confidence            1111111111100  00    0001112334445666654433333333332222222211 221110     0112223


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhchhH--HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 013453          325 VGEVLAITGFSLLVFQLSLYPFLERILGPIM--VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  402 (442)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (442)
                      .|..-++..+.+.++.+ ..+.+.-...|..  .+.++.+..+...+.+..   .+  ..|+ .....++....-....+
T Consensus       273 NG~veAv~tlLGa~~~~-~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~---t~--~Iw~-~Ya~yvlfr~~y~l~it  345 (433)
T KOG3810|consen  273 NGAVEAVSTLLGAIAAL-AAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ---TQ--HIWV-CYAGYVLFRVIYQLTIT  345 (433)
T ss_pred             cCHHHHHHHHHHHHHHH-HHHheeeccchhhHHHHHHHHHHhhhhhhhhhc---cc--ceeh-hhhhHHHHHhhHhhhhh
Confidence            44555555556666666 4444443333432  222332222222222211   11  2222 22222222222223334


Q ss_pred             hhhhhhcccCChhhhhHHHHHHHHHHHHHHhh
Q 013453          403 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (442)
Q Consensus       403 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (442)
                      .....+++....+.-|...|+..++.-+-..+
T Consensus       346 iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi  377 (433)
T KOG3810|consen  346 IATFQIARNLSSELFGLVFGINTFVALILQSI  377 (433)
T ss_pred             HHHHHHHHhhhhhhheeeeehHHHHHHHHHHh
Confidence            44455555677788899999988776655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.24  E-value=3.7e-06  Score=76.24  Aligned_cols=117  Identities=12%  Similarity=0.046  Sum_probs=97.4

Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 013453          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  396 (442)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (442)
                      .+|.+....|++.....+...+.++ +.+++.||++|++++.++..+-.++.++-.+.      .+.+.+.+.=.+.+.+
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sP-l~gyLadryNR~~v~~vG~~iW~~Av~~~~fs------~~Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASP-LFGYLADRYNRKRVIAVGIFIWTLAVFASGFS------NHFWQVLLCRGFVGIG  134 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHH-HHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccc
Confidence            4799999999999999999999999 88888999999999999888877777766654      2333344555566677


Q ss_pred             HHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          397 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      .....|..++++++.+|.++|+++.++.+....+|+.+|-..++
T Consensus       135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs  178 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS  178 (493)
T ss_pred             hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence            77888999999999999999999999999999999888866554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.23  E-value=1.1e-06  Score=86.73  Aligned_cols=128  Identities=13%  Similarity=0.019  Sum_probs=100.4

Q ss_pred             cccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhc-------------
Q 013453          313 KKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-------------  379 (442)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  379 (442)
                      ...++++++..+.|++.+...++..++.+ ...++.+|.+|++.+.++.++.+++.++..+.+...+             
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i-~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~  136 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLII-FVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN  136 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHH-HHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence            34567999999999999999999999988 5556667779999999988888888777655431100             


Q ss_pred             --------------------------------hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHH
Q 013453          380 --------------------------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG  427 (442)
Q Consensus       380 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  427 (442)
                                                      ...+..+++.-++.+.+.....+...+++.|.+|+++|+...|+.+..
T Consensus       137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~  216 (633)
T TIGR00805       137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI  216 (633)
T ss_pred             ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence                                            012344555666666677777788899999999999999999999999


Q ss_pred             HHHHHhhhcccCCC
Q 013453          428 MSLFKAAGPAGGGA  441 (442)
Q Consensus       428 ~~~g~~~gp~i~G~  441 (442)
                      ..+|.++|+.++|+
T Consensus       217 ~~iG~~lG~llgg~  230 (633)
T TIGR00805       217 AVFGPAFGYLLGSF  230 (633)
T ss_pred             HHhhhHHHHHHHHH
Confidence            99999999988765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PTZ00207 hypothetical protein; Provisional

Probab=98.23  E-value=4e-05  Score=74.04  Aligned_cols=119  Identities=15%  Similarity=0.049  Sum_probs=78.9

Q ss_pred             ccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHH
Q 013453          314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS-GFGLAFLLNCASVV  392 (442)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  392 (442)
                      ..+++|++..+.+.+..... ......+ ..+++.||+|+|+++.++.++..++.++..+..... ....+. +.+...+
T Consensus        53 L~~~lgls~~~l~~i~svg~-~~g~~~l-p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~-l~l~r~l  129 (591)
T PTZ00207         53 MQARYNLTQRDLSTITTVGI-AVGYFLL-PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR-LSVYNGL  129 (591)
T ss_pred             HHHHhCcCHHHHHHHHHHHH-HHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH-HHHHHHH
Confidence            34568999999998876633 3334444 568888999999999999999988887766642110 012222 2222233


Q ss_pred             HHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhc
Q 013453          393 KNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  436 (442)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp  436 (442)
                      .+.+.....+.....+.+.+| ++||++.|+......+|+++.+
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~  172 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILG  172 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555666776 7899999999999999997543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.19  E-value=2.3e-05  Score=73.64  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=108.4

Q ss_pred             HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhh-hhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013453           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL  144 (442)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G-~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l  144 (442)
                      .....++.++.+      .+.+.+...+...+++++.. .+...+|-|++...|+..-.+.....+++++.|+++...++
T Consensus       267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~  340 (463)
T KOG2816|consen  267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV  340 (463)
T ss_pred             EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence            345678999998      89888888888888888777 77778999999999999999999999999999999999988


Q ss_pred             HHhhcchhhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       145 ~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .++.........+.++.+..++++|+++++......+...++|.+-+.+..
T Consensus       341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            888655555469999999999999999999999999999999999888865

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.15  E-value=3.7e-05  Score=68.09  Aligned_cols=122  Identities=14%  Similarity=0.055  Sum_probs=109.5

Q ss_pred             HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccC--CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013453           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (442)
Q Consensus        69 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G  146 (442)
                      +.+|.++.|      .|-+.+...+...+.+....+..||..  -|-.+..++.+..-..++.+.++....+..+-.+-.
T Consensus       290 ~rfg~ss~~------~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~s  363 (451)
T KOG2615|consen  290 GRFGYSSMQ------QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKS  363 (451)
T ss_pred             CccCCChhh------heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            678999988      899999999999999999999999988  788888888888888888888999999999999999


Q ss_pred             hhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccc
Q 013453          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (442)
Q Consensus       147 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (442)
                      +..+...++ ..++....|.++||..+|+......++-++||+++|.+..+
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            988888885 88999999999999999999999999999999999998763

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.09  E-value=0.0025  Score=60.48  Aligned_cols=293  Identities=13%  Similarity=0.155  Sum_probs=147.4

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHH-HHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      +++++.+.+..|+..+.++    .+-.+.+.+=++...   +..+..+=....+ ...+...+..++++|++|.+++-+.
T Consensus        23 ~~k~~~l~~m~f~i~f~y~----~lR~~KD~lvvt~~g---ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~   95 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYT----ILRDLKDTLVVTAQG---AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhcCeEEEecCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4556666666666555433    223333333222211   1114444443333 4456677899999999999999877


Q ss_pred             HHHHHHHHHHHhcc---------c----------------------hHHHHHHHHHHHHhhcchhhH-H-HHHhhhhccc
Q 013453          119 TASVVIFNTLFGLS---------V----------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYACEIFRE  165 (442)
Q Consensus       119 ~~~~~i~~~~~~~a---------~----------------------~~~~l~~~r~l~G~~~g~~~~-~-~~~i~~~~~~  165 (442)
                      ...+.....++++.         +                      +.|.+.+..++.-+-...... . ..+..|.++.
T Consensus        96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~  175 (491)
T PF03219_consen   96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV  175 (491)
T ss_pred             HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            77666666655542         1                      112222333333332233333 3 6788999999


Q ss_pred             cchhhhhhhhhHhhhhHHHHHHHhhhhhcc-ccccCCCcccccccccCCcChhH----HHHHHHHHHHHHHHHhhccccC
Q 013453          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQ-PAEKYPNLFSSESLFGKFPYFLP----CLCISLFAFGVTIAAFWLPETL  240 (442)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~~~gw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~  240 (442)
                      +|-.|..++++.+.++|.++++.+..++.+ ..+..+        .+...|...    ..+..+.+++......++.+..
T Consensus       176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~--------~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v  247 (491)
T PF03219_consen  176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLP--------AGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNV  247 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------cccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999888888876 111100        001112211    1122222222233333333211


Q ss_pred             CCCCCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccC
Q 013453          241 HRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY  320 (442)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (442)
                      ..++...+..+         .+++++.+..-..+.+.++++|.+....+...++..........+-......+. +...+
T Consensus       248 l~~~~~~~~~~---------~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~y  317 (491)
T PF03219_consen  248 LTDPRFYPSAK---------KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDY  317 (491)
T ss_pred             cCccccchhhh---------cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHH
Confidence            11100000000         000001111123455677888888777776666655554444333322222111 11111


Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHH
Q 013453          321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (442)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (442)
                      + .-.|-.....++..++..+ .++.+-|++|-+....+
T Consensus       318 s-afmG~~~~~tGivtii~~~-l~~~iir~~GW~~~Ali  354 (491)
T PF03219_consen  318 S-AFMGKFSSWTGIVTIIMMF-LSSNIIRRFGWRTAALI  354 (491)
T ss_pred             H-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHH
Confidence            1 1234455556666666664 66777777776655544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.08  E-value=0.00097  Score=62.65  Aligned_cols=113  Identities=11%  Similarity=-0.072  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhh------chhhHHHHHHHHHHHHHHHH
Q 013453          325 VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS------GFGLAFLLNCASVVKNLLSV  398 (442)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  398 (442)
                      .-..+..+.++-.+|+. +..+......+.+.+.+..+.=.+.+.++.+....+      ....-...++..+..+...+
T Consensus       309 ~~i~~~~fNvgD~vGR~-~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRS-LTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhh-hhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34555666777777777 332221110111133333333333433333332211      00111223333444444555


Q ss_pred             HHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          399 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      ........+..+.+++++|..+..+....-.+|-.+|..+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667778888999999999999888888888887654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.06  E-value=0.0022  Score=59.29  Aligned_cols=296  Identities=12%  Similarity=0.126  Sum_probs=158.5

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHH-HHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      +++++.+.+..++..+.    ...+-.+.+.+.++....   ..+.++=+..-+ +..+..++.+++.++..|.+++-.-
T Consensus        26 ~~kflpl~Ll~f~I~~n----y~~lR~lKDslvv~~~ga---e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~   98 (509)
T COG3202          26 LKKFLPLALLFFCILFN----YNLLRSLKDSLVVTRQGA---ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHhhhheEeecCcc---hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            34444444444444333    344556667776653221   116677666666 6778889999999999999999888


Q ss_pred             HHHHHHHHHHHhcc---------ch-----------------------HHHHHHHHHHHHhhcchhhH-H-HHHhhhhcc
Q 013453          119 TASVVIFNTLFGLS---------VN-----------------------FWMAVLTRFLLGSLNGLLGP-I-KAYACEIFR  164 (442)
Q Consensus       119 ~~~~~i~~~~~~~a---------~~-----------------------~~~l~~~r~l~G~~~g~~~~-~-~~~i~~~~~  164 (442)
                      +..+....+++++.         ++                       .|..-+...+.-+-...... . .....|.+.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77777777777652         11                       13333333333333333333 3 677899999


Q ss_pred             ccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhcc----ccC
Q 013453          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP----ETL  240 (442)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~  240 (442)
                      .+|-.|.+++++.+.+++..++..+..++....+......-      ....+..+.+.+..+++.+.+.+++.    +.|
T Consensus       179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~------~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~  252 (509)
T COG3202         179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFK------DLLLQILFIVIVILGIIAILLYRYINRNVLTDP  252 (509)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence            99999999999999999999999998888763221100000      01123333444444444444444432    222


Q ss_pred             CCC-CCCCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCccc
Q 013453          241 HRH-NDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (442)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (442)
                      ... +.++++             ++++.+..-..+.+.+.++|.++...+...+++.+........-.-....+  ...+
T Consensus       253 ~f~~~~~~kk-------------~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~--~~~~  317 (509)
T COG3202         253 LFYLRAKKKK-------------KKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELY--PTTN  317 (509)
T ss_pred             chhHHHhccc-------------ccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc--CChh
Confidence            210 000000             000011112234566778888777766666665554444322221111100  0000


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHH
Q 013453          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (442)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (442)
                      --..-.|......++..++.....+.-+.||.|-.....+.-++
T Consensus       318 ~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv  361 (509)
T COG3202         318 EYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLV  361 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHH
Confidence            01222344455556665555555677777776765554443333

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=98.05  E-value=0.0007  Score=61.35  Aligned_cols=50  Identities=12%  Similarity=0.054  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcc
Q 013453          388 CASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  437 (442)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~  437 (442)
                      ......+...+-.......+..+.+|++++-.+..+...+-..|-+.|..
T Consensus       348 ~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~  397 (406)
T KOG1479|consen  348 FLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL  397 (406)
T ss_pred             HHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence            33334444444555667788888899888888877777777777766654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.04  E-value=6.8e-06  Score=77.70  Aligned_cols=139  Identities=11%  Similarity=0.049  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc----cCCchhhHH
Q 013453           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVIIM  117 (442)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~~~~  117 (442)
                      ++...+..+......+.+...+|.+.++ .|.+..+      .+.+...+.++.+++.++.|+++||    ..+|.....
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~------a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~  348 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ------ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV  348 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH------hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4556667777777788888899999988 5688888      8999999999999999999999999    667777766


Q ss_pred             HHHHHHHHH-HHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccch-hhhhhhhhHhhhhHHHHHH
Q 013453          118 GTASVVIFN-TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQ-ALGLSTVSTAWGIGLIIGP  187 (442)
Q Consensus       118 ~~~~~~i~~-~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~g~  187 (442)
                      ...+..+.. +.....++.......-+....+.....+ +.....+...+..| -...+....+.+.+..++|
T Consensus       349 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~  421 (495)
T KOG2533|consen  349 FLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG  421 (495)
T ss_pred             HHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence            665555544 4444443333333333333334444555 46777777655444 3344444444444444433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.98  E-value=0.00018  Score=66.69  Aligned_cols=107  Identities=17%  Similarity=0.244  Sum_probs=82.0

Q ss_pred             hhhHHHHHHHHHHHHHHhcc---ch------HHHHHHHHHHHHhhcchhhH-HHHHhhhhcccc---chhhhhhhhhHhh
Q 013453          113 PVIIMGTASVVIFNTLFGLS---VN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE---HQALGLSTVSTAW  179 (442)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~a---~~------~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~---~r~~~~~~~~~~~  179 (442)
                      |+++++.++..+|.++..++   ++      .+.++++-++.++|.|..-| ..++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888884432   22      36788889999999999999 599999999865   4667888999999


Q ss_pred             hhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhh
Q 013453          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (442)
Q Consensus       180 ~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (442)
                      ++|..+++.+.+++.+                +++|...|.+.++..+++++....
T Consensus        82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999987                566666667776666665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.98  E-value=0.00013  Score=70.18  Aligned_cols=195  Identities=18%  Similarity=0.165  Sum_probs=129.9

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccc---cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCC-chhh
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAK---REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVI  115 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~~  115 (442)
                      |.+....+..++.++.+.......|..... ++-+.   .+      .++....+.++..+++.+.|.+..+++| |+.+
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l  383 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITE------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL  383 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccce------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Confidence            334444556666666555555556655443 33333   24      6788888899999999999999998886 5555


Q ss_pred             HHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhh
Q 013453          116 IMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (442)
Q Consensus       116 ~~~~~~~~i~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (442)
                      +++.+++.++..+++.  .+|....+..-++.|++.|.... ......-..|+++-+.+.++......+|..+|..+..-
T Consensus       384 i~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  384 IFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6777776665444443  34555666778899998777655 56666667899999999999999998888887766544


Q ss_pred             hccccc-------------------------------c-------CCCc---------ccccccccCCcChhHHHHHHHH
Q 013453          193 LAQPAE-------------------------------K-------YPNL---------FSSESLFGKFPYFLPCLCISLF  225 (442)
Q Consensus       193 l~~~~~-------------------------------~-------~~~~---------~gw~~~~~~~~~~~~~~~~~~~  225 (442)
                      +....-                               +       .++.         ..-+..+ ..+||.+++.....
T Consensus       464 I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaF  542 (599)
T PF06609_consen  464 IFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAF  542 (599)
T ss_pred             HHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            332000                               0       0000         0012334 45788888888888


Q ss_pred             HHHHHHHHhhccccCCC
Q 013453          226 AFGVTIAAFWLPETLHR  242 (442)
Q Consensus       226 ~~~~~~~~~~~~e~~~~  242 (442)
                      +.++++..+++++..+.
T Consensus       543 G~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  543 GVVAIIAALFLGDIDKY  559 (599)
T ss_pred             HHHHHHHHHHcCChHHh
Confidence            88888888888876544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.86  E-value=0.00071  Score=65.98  Aligned_cols=142  Identities=19%  Similarity=0.115  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHH---HHHHHHHHHhhcchhhH-HHHHhhh
Q 013453           86 YVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM---AVLTRFLLGSLNGLLGP-IKAYACE  161 (442)
Q Consensus        86 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~---l~~~r~l~G~~~g~~~~-~~~~i~~  161 (442)
                      .................+...|++|||.....+.++..++.+..++..+...   ..+...+...+.+...- ...+.+|
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  433 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE  433 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333455555566689999999999999999999999999988765433   44444444444444433 5889999


Q ss_pred             hccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHH-HHHHHhhccccC
Q 013453          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETL  240 (442)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~  240 (442)
                      .+|...|..+.+.......+|.+++|.+.......               ...  ....+.+....+ ..+...++||+.
T Consensus       434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------------~~~--~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM---------------FPL--LGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------ccc--chHHHHHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999999999999987665431               111  111222333333 345558899987


Q ss_pred             CCCC
Q 013453          241 HRHN  244 (442)
Q Consensus       241 ~~~~  244 (442)
                      ....
T Consensus       497 ~~~l  500 (521)
T KOG0255|consen  497 GKPL  500 (521)
T ss_pred             CCCC
Confidence            6544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.79  E-value=3.6e-05  Score=70.94  Aligned_cols=160  Identities=12%  Similarity=0.051  Sum_probs=108.8

Q ss_pred             ccccccc-hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh-hch
Q 013453          276 KSLLKNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGP  353 (442)
Q Consensus       276 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  353 (442)
                      +..+++| .++.+...-+.--+.++++...+..|++...... +|+|.+++.-+...++.-.-.... +++++.|| +|+
T Consensus        14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~i-~GG~laDr~LG~   91 (498)
T COG3104          14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTPI-IGGWLADRVLGT   91 (498)
T ss_pred             cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHHH-HHHHHHHHhcch
Confidence            3455544 4666666777777888888888888887654433 789998888777776655555555 66666555 799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh--hhhHHHHHHHHHHHHH
Q 013453          354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLF  431 (442)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g  431 (442)
                      |+.+..+.++..++.+++..........    +.+...+...+...+=+....++.|.+|++  +|-.++++..+..++|
T Consensus        92 ~~tI~lGail~~iGh~~L~~~~~~~~~g----l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG  167 (498)
T COG3104          92 RRTIVLGAILMAIGHLVLAISSVSGPGG----LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIG  167 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccccccH----HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence            9999999999999988877653011111    112222222333445566777788877543  4777888888889999


Q ss_pred             HhhhcccCCC
Q 013453          432 KAAGPAGGGA  441 (442)
Q Consensus       432 ~~~gp~i~G~  441 (442)
                      +.++|.+.|+
T Consensus       168 sl~~p~i~~~  177 (498)
T COG3104         168 SLIAPIITGL  177 (498)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.68  E-value=0.0014  Score=56.43  Aligned_cols=108  Identities=15%  Similarity=0.019  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHHHHHhhhhc
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF  163 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~  163 (442)
                      .|.+.-+-.+...+..+......||+---.=..+..++.+.+.++.+++++.++-+.+-.+..++.|.--...--++..+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y  143 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY  143 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence            45666666677777788888889987654445566777888889999999999999998888888777655433334444


Q ss_pred             cccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++.    .++.+..+.+.+..+|..--..+.+
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~  171 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTS  171 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhh
Confidence            432    3444555555555666544444443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.54  E-value=0.008  Score=47.38  Aligned_cols=99  Identities=16%  Similarity=0.055  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 013453          332 TGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA  411 (442)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (442)
                      ......+.++ ..+.+.++.|.|+.+.++.+...+-.....+       ..+..++....+.++.....+.....++.+.
T Consensus        46 ~Y~~~~~s~l-~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   46 LYGSFAISCL-FAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------PNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHH-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            3444444454 4556778889999998888777766555433       2233456666667777777888888888888


Q ss_pred             CChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          412 VDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       412 ~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      .+++.+++-.|+.-.+.+.+.++|..+
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            899999999999988888888877654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.45  E-value=0.0014  Score=56.17  Aligned_cols=119  Identities=17%  Similarity=0.041  Sum_probs=79.5

Q ss_pred             ccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHH
Q 013453          314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--FGLAFLLNCASV  391 (442)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  391 (442)
                      ..+.+|+|.++...+.....++..++ + ..+.+.|+.+++..+.++.+...++...+.......-  ...|... +...
T Consensus        28 Lk~~l~~sq~~l~~l~~~~~~G~~~G-~-~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~-~~~~  104 (250)
T PF06813_consen   28 LKSRLGYSQSQLNTLSTAGDIGSYFG-I-LAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC-LFLF  104 (250)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhcc-H-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH-HHHH
Confidence            44568999999999998888888775 4 6788888889999999999998888776654433221  2233322 2222


Q ss_pred             HHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhc
Q 013453          392 VKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  436 (442)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp  436 (442)
                      ..+...............+.+| ++||++.|+.-....+++++-.
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t  148 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFT  148 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHH
Confidence            2222222233333333445687 6899999999888888877643

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.40  E-value=0.0087  Score=50.74  Aligned_cols=241  Identities=10%  Similarity=0.002  Sum_probs=107.5

Q ss_pred             cchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 013453          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (442)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (442)
                      |+|+........+.++|.++....-  +.+..        -+... +..|+..+.+.+++.++-++.+..+ +++-+...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF--~~~~~--------~~~~~-~~~W~~I~si~~lL~~IpLIly~if-Gk~fd~~~   69 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPF--LISSS--------VVIAL-TNNWQWILSIFILLIFIPLILYIIF-GKNFDIYS   69 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhH--Hhcch--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-cccccccC
Confidence            5677777777778888887755432  22100        00011 4557777677776665555554444 22211111


Q ss_pred             CCccchhhhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccC----C
Q 013453          246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY----S  321 (442)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  321 (442)
                      ++ ++++           .++.+.+.+.+..+.+|++..|...+.+..+-....--  ..+.+..........+.    +
T Consensus        70 ~~-~k~~-----------k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p--~t~~~~~~~~~~s~~ni~~~~~  135 (267)
T PF07672_consen   70 PK-EKQE-----------KENSTLSKKPSYKSILKEKETWKWILIYGIWLVVVVFP--FTPSWFNILIWISPANIKSVVS  135 (267)
T ss_pred             cc-cccc-----------cccccccccchHHHHHccchHHHHHHHHHHHheeEEEe--ccchhHhHhhhcCccccccccc
Confidence            11 0000           00011123456788999999887777666654322111  00111110000000111    0


Q ss_pred             hh----HHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH----HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013453          322 TQ----MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG----VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK  393 (442)
Q Consensus       322 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (442)
                      ..    .......+.-.+..++.+.++.+-....+||+.+....    ++..+..++ .+.....+........+.+++.
T Consensus       136 ~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~-~~~~g~~~~~~~~~f~I~~Fl~  214 (267)
T PF07672_consen  136 GGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVV-VYFVGPGNAAGFAFFYIFGFLA  214 (267)
T ss_pred             ccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhCcchHHHHHHHHHHHHHH
Confidence            11    11222333333334444444444434455666544322    222222222 1111111112233355666666


Q ss_pred             HHHHHHHHHhhhhhhcc--cCChhhhhHHHHHHHHHHHHHHh
Q 013453          394 NLLSVSIITGLFILQNR--AVDQDQRGAANGIAMTGMSLFKA  433 (442)
Q Consensus       394 ~~~~~~~~~~~~~~~~~--~~~~~~~g~~~g~~~~~~~~g~~  433 (442)
                      +.+.-+..++......|  -..|++.|...|+.--++++.-.
T Consensus       215 G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yT  256 (267)
T PF07672_consen  215 GFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYT  256 (267)
T ss_pred             HHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHH
Confidence            66666666665555444  23556677777766555555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.34  E-value=0.0057  Score=56.06  Aligned_cols=108  Identities=17%  Similarity=0.257  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHH
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV-----VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKA  157 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~-----~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~  157 (442)
                      ..+....|.+|-.++.--...+  |+  |++.+.+.+-.     .+.....-+.++.|..++.-+..|+.+|..++ ...
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            7777777777766654332221  33  44444333222     22223334568999999999999998888777 688


Q ss_pred             HhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          158 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       158 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+.|..++++|..+++....+-++|..++..++-.+-.
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999988866643

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.28  E-value=0.0048  Score=42.07  Aligned_cols=67  Identities=18%  Similarity=0.215  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                      -..++++.........+++.|+.      +.|+++.++|.+.++..+..+++.+ +.+.+.||.++++......
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~------~~Gl~~~~iGil~~i~~~~~~~~~p-l~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLK------QLGLSPSQIGILSAIRPLIRFLAPP-LWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhh------hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCccHHHHHHH
Confidence            34555555555566566666654      3699999999999999999999999 6666777777766655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.15  E-value=0.0017  Score=61.31  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=105.5

Q ss_pred             ccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhcc----------chHHHHHHHH
Q 013453           73 IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMAVLTR  142 (442)
Q Consensus        73 ~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a----------~~~~~l~~~r  142 (442)
                      .++..      .|.+..+..++..++..+..+..-++.-|+++....++..+..+....-          ++.+-.+.--
T Consensus       252 fs~~f------~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~  325 (433)
T PF03092_consen  252 FSPSF------YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT  325 (433)
T ss_pred             cCHHH------HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence            56655      8888888888889999999888888888999988888777666543221          1222222233


Q ss_pred             HHHHhhcch-hhHHHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHH
Q 013453          143 FLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC  221 (442)
Q Consensus       143 ~l~G~~~g~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~  221 (442)
                      ++..+..+. ..|...+++|..|+...+..+++.....++|..++..++..+.+..+...      ..|  .+.....++
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~------~~f--~~l~~lili  397 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR------DDF--SNLWLLILI  397 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc------ccc--cchHHHHHH
Confidence            455554444 45578899999999999999999999999999999999999988443211      112  122233344


Q ss_pred             HHHHHHHHHHHHhhccccCC
Q 013453          222 ISLFAFGVTIAAFWLPETLH  241 (442)
Q Consensus       222 ~~~~~~~~~~~~~~~~e~~~  241 (442)
                      ..+..++.+....++|+..+
T Consensus       398 ~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  398 CSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHHHHHHHHHcCCCch
Confidence            44555555555666776543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.07  E-value=0.0034  Score=58.79  Aligned_cols=119  Identities=15%  Similarity=0.054  Sum_probs=86.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 013453          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  397 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (442)
                      .+-+.+..|++.+...++..+..+..+.|-.|...-|+.+..+.++..++.+++......++.  +..+.+.+=+..+.+
T Consensus        66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~--~~y~mL~~R~l~Gvg  143 (488)
T KOG2325|consen   66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG--VKYLMLVARILTGVG  143 (488)
T ss_pred             CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHcCcC
Confidence            566777899999999999999999777776666545888889999999998888655554432  222333333333344


Q ss_pred             HHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhccc
Q 013453          398 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  438 (442)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i  438 (442)
                      .+.....-.+++...-.++|.++++..+....+|.++||.+
T Consensus       144 ~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  144 VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            45566777888887777889999988888778888888765

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.01  E-value=0.081  Score=46.52  Aligned_cols=100  Identities=12%  Similarity=0.170  Sum_probs=65.2

Q ss_pred             HHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhHH-HHHhhhhccc--cch-
Q 013453           93 FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQ-  168 (442)
Q Consensus        93 ~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~--~~r-  168 (442)
                      +..+..+++.+.+..++|-|+++.++...+...-. .-+=+.+..++-.-...|++.+..+.. -+|+++.-..  ++| 
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~  147 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRG  147 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhh
Confidence            33445556666889999999999988877755432 223467888999999999998887774 5565554332  233 


Q ss_pred             --------hhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          169 --------ALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       169 --------~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                              .+..+.+.+....+...|..++..+
T Consensus       148 ~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  148 EQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             hhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence                    3455555555555555555544443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.74  E-value=0.023  Score=53.07  Aligned_cols=129  Identities=9%  Similarity=-0.098  Sum_probs=93.6

Q ss_pred             hchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhc------cc
Q 013453           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL------SV  133 (442)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~------a~  133 (442)
                      ....+..+.+.-|.++..      +|..-+...+....+.+...++.+|+|..|.=+++...-.++..++..      .+
T Consensus       277 f~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~  350 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP  350 (432)
T ss_pred             CcHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            455666677777999999      999999999999999999999999999988877776644433333221      22


Q ss_pred             ----hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          134 ----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       134 ----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                          +...++.+-.+.=+|-=.+.. ..-++-|..|+++||...|.-....++-..+-..++-.+.
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                233344444444445223333 5888999999999999999999999998888777665443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.035  Score=51.99  Aligned_cols=109  Identities=17%  Similarity=0.304  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhc---ccCCchhhHHHHHHHHHHHHHHhcc------------------chHHHHHHHH
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVAD---RYGRKPVIIMGTASVVIFNTLFGLS------------------VNFWMAVLTR  142 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~d---r~Grr~~~~~~~~~~~i~~~~~~~a------------------~~~~~l~~~r  142 (442)
                      .+.-.-...++..+++.+.+.+++   ++||++++.++..+..+..++.-..                  +++...++.-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            344444555666666666777765   5899999999998888888776542                  2456677777


Q ss_pred             HHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          143 FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       143 ~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      ++.|++.+.... .+.++.+.+ +++|..+.++...-..+++.++-......
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999888 488888888 67888898888888888777665554443

>PRK03612 spermidine synthase; Provisional

Probab=96.70  E-value=0.12  Score=50.05  Aligned_cols=141  Identities=13%  Similarity=0.059  Sum_probs=78.9

Q ss_pred             HHHHHHhHhcchhhchhHH-HHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHH--HH
Q 013453           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS--VV  123 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~--~~  123 (442)
                      ....|+.++..-.+-.+.. .+..-+|.+..+      .+.+.+++..|..+|+.+.+++.++--|+. ..+-+.+  .+
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~   92 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLG   92 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHH
Confidence            3334444443333333333 333446777777      899999999999999999998874322222 1111111  11


Q ss_pred             -HHHHHH----hccchH-HHHHHHHHHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          124 -IFNTLF----GLSVNF-WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       124 -i~~~~~----~~a~~~-~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                       ++..+.    ++...+ ..++..-++.++..|+..|. ..+..+ ...++-++..|.......+|+++|.++.+++.-
T Consensus        93 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612         93 GLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence             111111    111111 12233345667777777774 444433 222335677888899999999999999888764

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.66  E-value=0.0047  Score=56.52  Aligned_cols=122  Identities=17%  Similarity=0.088  Sum_probs=82.3

Q ss_pred             HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCC-chhhHHHHHHHHHHHHHHh-c---cchHHHHHHHH
Q 013453           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVVIFNTLFG-L---SVNFWMAVLTR  142 (442)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~~i~~~~~~-~---a~~~~~l~~~r  142 (442)
                      .+.-|.+...      .|++.....++.++++...|.+.||... |+++++......++..... +   ....+.++..-
T Consensus       293 l~~sgY~~~~------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~  366 (480)
T KOG2563|consen  293 LCPSGYEGVF------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTC  366 (480)
T ss_pred             cccccCCccc------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhH
Confidence            3444566556      8999999999999999999999999864 6666666666555532221 1   12345566666


Q ss_pred             HHHHhhcchhhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          143 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       143 ~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      .+.|.+.....|. .-+-.|.+-|..-+.-.|+.+....+=.++-..+-+...+
T Consensus       367 ~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~  420 (480)
T KOG2563|consen  367 GLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE  420 (480)
T ss_pred             HHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence            7888877777775 6677776655555566777766666555555555666655

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.49  E-value=0.6  Score=42.06  Aligned_cols=102  Identities=11%  Similarity=0.020  Sum_probs=64.3

Q ss_pred             CcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013453          316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  395 (442)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (442)
                      +++|++..+++.++........+.+. ..+.+.||+|||+......++..+.++.-..       .....+.+.-++.+.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~-~~G~laD~~Grk~~cl~~cily~~scl~k~~-------~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGT-FVGSLADRYGRKKACLLFCILYSLSCLTKHS-------SNYPVLLLGRVLGGI  133 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHH
Confidence            34799999999999988888888888 5566777789999988888887777754322       112223333344444


Q ss_pred             HHHHHHHhhhhhh-----cccCChhhhhHHHHHHH
Q 013453          396 LSVSIITGLFILQ-----NRAVDQDQRGAANGIAM  425 (442)
Q Consensus       396 ~~~~~~~~~~~~~-----~~~~~~~~~g~~~g~~~  425 (442)
                      .........-++.     .+-+|++..+...+...
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t  168 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT  168 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            4444444433332     23457676666666444

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.46  E-value=0.015  Score=57.68  Aligned_cols=123  Identities=9%  Similarity=-0.061  Sum_probs=78.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHH
Q 013453          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--FGLAFLLNCASVVKNL  395 (442)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  395 (442)
                      +|++...+..+........-+...+.+...|+++|+++.+.++.++..++..++........  .......++...+...
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            57788777766666555555555546666677899999999998888888776655322111  1111112222222223


Q ss_pred             HHHHHHHhhhhhhcccCChh---hhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          396 LSVSIITGLFILQNRAVDQD---QRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      +..+.-+...+...+.++++   .+-+...++....++|+.+++.+.+
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~  145 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITP  145 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345566777777767543   4777888888889999988877654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.36  E-value=0.07  Score=36.87  Aligned_cols=72  Identities=21%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             HHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 013453          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  375 (442)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (442)
                      .-+.+...+|...      ++.++|..+.|++.+.+.++.+++.+ ...++.++.++++.+..+.+...+......+..
T Consensus         7 gRFayTplLP~M~------~~~~ls~~~ag~lasaNy~GYL~GAl-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    7 GRFAYTPLLPLMQ------ADGGLSLSQAGWLASANYLGYLVGAL-LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HHHHHHhHhHHHH------HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555666544      44699999999999999999999998 566666666778888888888888877776653

Note that many members are hypothetical proteins.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.99  E-value=0.0022  Score=57.68  Aligned_cols=110  Identities=10%  Similarity=0.079  Sum_probs=2.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHH
Q 013453          328 VLAITGFSLLVFQLSLYPFLERI-LGPIMVARIAGVLTIPLLTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVS  399 (442)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  399 (442)
                      .+..+.++-.+|+. +..+...+ .++|++ .+..+.=.+.+.++......+.       .....+.++..++.+...+-
T Consensus       187 ~fl~Fn~gD~iGR~-l~~~~~~~~~~~~~l-~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  187 LFLLFNLGDFIGRF-LASWPRWPGPSPRWL-WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcch-hcceeEecccccccH-HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            45567788888887 44433222 123333 3332333333333322211100       01112233333344445555


Q ss_pred             HHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          400 IITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      .......+..+.+++++|..+..+....-..|-.+|..+.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             --HHHH----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777778888889999998888888888888887654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.81  E-value=0.57  Score=44.55  Aligned_cols=118  Identities=8%  Similarity=0.025  Sum_probs=75.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchh-------------------
Q 013453          321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG-------------------  381 (442)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  381 (442)
                      +++....+.+..-+...+.-..+..++.+|.+|+++...........+.++.+...+....                   
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4466777766655555555233667778888998887776666555555554442211000                   


Q ss_pred             -------hHHHHHHHHHHHHHHHHHHHH-hhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccC
Q 013453          382 -------LAFLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       382 -------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                             .|. ..+..+..-..+....+ ..+..++|...+++..+-.++....+++|..+++.+.
T Consensus       121 ~~i~~~~~W~-~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~  185 (472)
T TIGR00769       121 GFIAILRIWS-FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI  185 (472)
T ss_pred             HHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111 11222222233444444 7899999999999999999999999999999998654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.77  E-value=0.23  Score=44.63  Aligned_cols=150  Identities=9%  Similarity=-0.030  Sum_probs=82.9

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      +..+.+..+.++...+.-+.......++.+++.+.-.  .   ...-..+-.....+..++.|...|+..|+|++...+.
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~--l---vAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~  101 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLL--L---VAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLL  101 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceeh--h---HHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHh
Confidence            3445677777777777766666777777777654322  0   2222223334456777888999999999999877665


Q ss_pred             HHHHHHHH------Hhcc------chHHHHHHHHHHHHhhcc--hhhH-HHHHh--hhhc----cccchhhh---hhhhh
Q 013453          121 SVVIFNTL------FGLS------VNFWMAVLTRFLLGSLNG--LLGP-IKAYA--CEIF----REEHQALG---LSTVS  176 (442)
Q Consensus       121 ~~~i~~~~------~~~a------~~~~~l~~~r~l~G~~~g--~~~~-~~~~i--~~~~----~~~~r~~~---~~~~~  176 (442)
                      +--++.++      ..+.      .++..+..+-++.-.-++  -... +.+++  .||.    ..+.+...   .+...
T Consensus       102 lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir  181 (503)
T KOG2601|consen  102 LQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIR  181 (503)
T ss_pred             hccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhh
Confidence            43332222      2221      245555544444333222  2222 22222  2333    22333333   24444


Q ss_pred             HhhhhHHHHHHHhhhhhcc
Q 013453          177 TAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       177 ~~~~~g~~~g~~~~~~l~~  195 (442)
                      ..-..--.+.|.+.|.+.+
T Consensus       182 ~iDq~tn~Lapv~tg~Iit  200 (503)
T KOG2601|consen  182 GIDQSTNLLAPVITGLIIT  200 (503)
T ss_pred             hhhhhhhchhhhhhcccce
Confidence            4455567788999998887

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.65  E-value=0.2  Score=47.39  Aligned_cols=109  Identities=13%  Similarity=0.013  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCc-hhhHHHHHH---HHHHHHHHhc---------cchHHHHHHHHHHHHhhcc
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGTAS---VVIFNTLFGL---------SVNFWMAVLTRFLLGSLNG  150 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr-~~~~~~~~~---~~i~~~~~~~---------a~~~~~l~~~r~l~G~~~g  150 (442)
                      .-.....+.++-.+|..+..+.. .-++| +.+.+..+.   +....++|..         -++-+..++.-++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            45667778888888887554421 11223 123333332   2222233322         2455667777899999999


Q ss_pred             hhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          151 LLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       151 ~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      -... +..+..+..+++||..+-.+...+..+|..+|..++-.+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888 588888889999999999999999999999988876544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.38  E-value=0.0033  Score=60.90  Aligned_cols=128  Identities=16%  Similarity=0.004  Sum_probs=2.4

Q ss_pred             cccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhh--------------
Q 013453          313 KKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS--------------  378 (442)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  378 (442)
                      ...++++++..+.|++.+..-++.++..+++..+-.|+ +|.+.+..+.++.+++.+++..-+...              
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~  106 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN  106 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence            35677999999999999999999999988666665444 666777777777777766554311100              


Q ss_pred             ------------------------------chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHH
Q 013453          379 ------------------------------GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  428 (442)
Q Consensus       379 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  428 (442)
                                                    ....+.++++..++.+.++...++...+++-|.++++..+...|+..+..
T Consensus       107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~  186 (539)
T PF03137_consen  107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMS  186 (539)
T ss_dssp             ---------------------------------------------SSS--------------------------------
T ss_pred             cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHh
Confidence                                          00123455666677777888888999999999999999999999999988


Q ss_pred             HHHHhhhcccCCC
Q 013453          429 SLFKAAGPAGGGA  441 (442)
Q Consensus       429 ~~g~~~gp~i~G~  441 (442)
                      .+|-++|=.++|.
T Consensus       187 ~lGPa~Gf~lg~~  199 (539)
T PF03137_consen  187 ILGPALGFLLGSF  199 (539)
T ss_dssp             -------------
T ss_pred             hccHHHHHHHHHH
Confidence            8888887666654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.04  E-value=0.51  Score=43.66  Aligned_cols=95  Identities=18%  Similarity=0.173  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHH
Q 013453           82 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM--GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAY  158 (442)
Q Consensus        82 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~--~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~  158 (442)
                      .+-|.+-++..+..+++.+..|++..++.+..-+.+  ..++.+...++++..+|.|..+++.++.+.......+ +..-
T Consensus       285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~q  364 (412)
T PF01770_consen  285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQ  364 (412)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999888887544443  3445556667778899999999999988887666666 5677


Q ss_pred             hhhhccccchhhhhhhhh
Q 013453          159 ACEIFREEHQALGLSTVS  176 (442)
Q Consensus       159 i~~~~~~~~r~~~~~~~~  176 (442)
                      ++....++.-+..+|+..
T Consensus       365 IA~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  365 IAKNLSEERYALVFGINT  382 (412)
T ss_pred             HHHhccccceeeeeeeHH
Confidence            777777777677666654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=94.57  E-value=1.8  Score=42.01  Aligned_cols=143  Identities=16%  Similarity=0.054  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHH--
Q 013453          290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL--  367 (442)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  367 (442)
                      ..++..++...+.....-.+...     +|-+....+.+.+++-.+..+|+. +++++.++..++ ...+-..+..++  
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~-----~G~s~~~~~~ii~~fl~glalGs~-l~~~~~~~~~~~-~~~~e~~i~l~~~~   94 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYL-----LGDSVTQFSTVIGLMLFAMGVGAL-LSKYLLRDAAAG-FVAVELLLALLGGL   94 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHH-HHHHHHHHHHHHHH
Confidence            33444444444444443333221     466777777777777677777766 444444332222 111111111111  


Q ss_pred             -HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          368 -LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       368 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                       ..++....... ...........+..++......|....+..+ ...++.++..|-......+|+++|+.+.|+
T Consensus        95 ~~~ll~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~  167 (521)
T PRK03612         95 SALILYAAFAFQ-GLSRLLLYVLVLLIGLLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPF  167 (521)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence             11111111000 0111111222222233333444554444433 222235667777788888888888877664

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.54  E-value=0.0057  Score=51.41  Aligned_cols=68  Identities=16%  Similarity=0.280  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhh---------hcccCCc
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLV---------ADRYGRK  112 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l---------~dr~Grr  112 (442)
                      ..+....+.+++-+..++....+-.+.++.+.++..      ...++-...+.-++..++.|..         .||+|||
T Consensus        18 svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~------~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~   91 (412)
T KOG4830|consen   18 SVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSS------RAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRR   91 (412)
T ss_pred             eeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcch------hHHHHHhhHHHHHHhcccccccccccccHHHhhhhcce
Confidence            344455566667666677777777788899999988      7777777777888888877644         4699998


Q ss_pred             hhh
Q 013453          113 PVI  115 (442)
Q Consensus       113 ~~~  115 (442)
                      +..
T Consensus        92 ~~w   94 (412)
T KOG4830|consen   92 MSW   94 (412)
T ss_pred             eee
Confidence            865

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.54  E-value=0.93  Score=40.14  Aligned_cols=113  Identities=19%  Similarity=0.065  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 013453          323 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  402 (442)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (442)
                      ...+.......+...++.. ..+.+.|+.|||+....+............+...    .............+.......+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSL-LAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----VGLALLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhhhHHHHH
Confidence            4667777777777777775 5666666668886666665442333222222221    1111122222223344446677


Q ss_pred             hhhhhhcccCCh-hhhhHHHHHHHH-HHHHHHhhhcccCC
Q 013453          403 GLFILQNRAVDQ-DQRGAANGIAMT-GMSLFKAAGPAGGG  440 (442)
Q Consensus       403 ~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~~gp~i~G  440 (442)
                      ....+..+..|+ +.|+...+.... ....|..++|.+++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888888887 678998888888 57777777775543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.87  E-value=0.02  Score=51.51  Aligned_cols=106  Identities=20%  Similarity=0.124  Sum_probs=2.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHHHHHHHHH---HHHHHh----------ccchHHHHHHHHHHHHhhcch
Q 013453           86 YVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVI---FNTLFG----------LSVNFWMAVLTRFLLGSLNGL  151 (442)
Q Consensus        86 ~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~i---~~~~~~----------~a~~~~~l~~~r~l~G~~~g~  151 (442)
                      .....+.++-.+|..+.++.-=+ -.+|++.. ..+.-.+   ..++|.          +-+|-+..++.-++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            34567888888888877663211 13444443 3222222   222221          123446677778899999999


Q ss_pred             hhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhh
Q 013453          152 LGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (442)
Q Consensus       152 ~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (442)
                      ... +..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             --HHHH------------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888 58888999999999988888888888888888776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.17  E-value=1.8  Score=39.84  Aligned_cols=110  Identities=19%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             hHHHHHHHH-HHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHh---------ccchHHHHHHHHHHHHhhcch
Q 013453           82 SYAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------LSVNFWMAVLTRFLLGSLNGL  151 (442)
Q Consensus        82 ~~~g~~~s~-~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~---------~a~~~~~l~~~r~l~G~~~g~  151 (442)
                      ++.-.+..+ +.+.-.+|.+.+.++-++ +||+..+.. ++-.+..-++.         +-.+-++++..-.+.|+..|-
T Consensus       282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v-~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  282 WYALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPV-LLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHH-HHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            335566666 888888887777776555 344443333 33222222222         234667788888999999999


Q ss_pred             hhHH-HHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          152 LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       152 ~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      ...+ ..+..+..+++++..+-.+.......|...|..++...
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l~  402 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWVF  402 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            8885 88889999999988888888888888888887776443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.67  E-value=0.86  Score=42.38  Aligned_cols=124  Identities=16%  Similarity=0.027  Sum_probs=75.8

Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHhhHHHHHHH---hhchhHH-HHHHHHHHHHHHHHHHHHHHhh-----chh-----h
Q 013453          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER---ILGPIMV-ARIAGVLTIPLLTSYPYIAMLS-----GFG-----L  382 (442)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~  382 (442)
                      ..|.+....+.+....-+.+++.+++++...||   |+||||. +..+.....+.+.++++.....     +..     .
T Consensus        61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~r  140 (498)
T KOG0637|consen   61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPR  140 (498)
T ss_pred             HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchH
Confidence            368888888888888888888888855554443   4566654 4445555556666666654322     111     1


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhhhhhhcccCChhhhhH-HHHHHHHHHHHHHhhhcccCC
Q 013453          383 AFLLNCASVV-KNLLSVSIITGLFILQNRAVDQDQRGA-ANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       383 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      .+.+.++++. .=+.........-++..++..++++-+ +++....+..+|+.+|=...+
T Consensus       141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  141 AIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            1222222221 222333445556777778776666666 999999999999888765544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.08  E-value=3.1  Score=36.76  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCC-chh-----hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HH
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGR-KPV-----IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IK  156 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~-----~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~  156 (442)
                      .-|....|.+|-.+..     =+-|+=+ +..     +..-.+++.+...+..+.++++..++.-+.-|+-+|..++ ..
T Consensus       290 YRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf  364 (409)
T KOG3880|consen  290 YRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTF  364 (409)
T ss_pred             chhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHH
Confidence            6788888876643322     1112211 111     1222345555666777899999999999999996666666 56


Q ss_pred             HHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          157 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       157 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                      --+.+..++++|-.+++....+-++|..++..++-.+-
T Consensus       365 ~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  365 HNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            66777778899999999999999999998887765543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.48  E-value=3.2  Score=35.65  Aligned_cols=102  Identities=20%  Similarity=0.202  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhH----HHHHHHHHHHHHHhc-c----chHHHHHHHHHHHHhhcchhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-S----VNFWMAVLTRFLLGSLNGLLG  153 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~-a----~~~~~l~~~r~l~G~~~g~~~  153 (442)
                      .....-++..|..+|.+..|++... +.||+-+.    .+.+++.+..+..+. .    .++..+++.-++.|++.=...
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4555667777777888888888764 45555443    223344443333211 1    246667777888887632333


Q ss_pred             HHHHHhhhhccccchhhhhhhhhHhhhhHHHH
Q 013453          154 PIKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (442)
Q Consensus       154 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (442)
                      ++.-.+...++..++.+.--.++..+++|.++
T Consensus       223 ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  223 GVILNLPHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHHhcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence            33444555555555544444556666666654

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=81.52  E-value=19  Score=33.18  Aligned_cols=149  Identities=10%  Similarity=0.019  Sum_probs=69.4

Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHH--HHHHHHHHHhhHHHHHHHhhchhHHHHH-
Q 013453          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAI--TGFSLLVFQLSLYPFLERILGPIMVARI-  359 (442)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  359 (442)
                      ++..++..+.+.... .+.....|..+..      -|.|-++.+.....  ....-++-++++-..-.||+|||+...+ 
T Consensus        32 ~illLl~LYllQGiP-~GL~~~iP~lL~a------k~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIP-LGLIGAIPLLLQA------KGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hHHHHHHHHHHcCCc-hhHhhhhHHHhcC------CCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence            344444444443332 3333456665543      34454444433221  1222333344355555678888775443 


Q ss_pred             HHHHHHHHHHHHHHHHHhh-----chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhh
Q 013453          360 AGVLTIPLLTSYPYIAMLS-----GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  434 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  434 (442)
                      +..+.+..+.++.+..+..     ..+.........+...+.....-.....+.-....+++.|-++.........|.++
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL  184 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL  184 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence            3333344444443322211     01111111112222222332333344555556677888888887777777777777


Q ss_pred             hccc
Q 013453          435 GPAG  438 (442)
Q Consensus       435 gp~i  438 (442)
                      +-.+
T Consensus       185 ~~~i  188 (510)
T KOG3574|consen  185 GNVV  188 (510)
T ss_pred             hcce
Confidence            6543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.22  E-value=1.2  Score=44.51  Aligned_cols=126  Identities=14%  Similarity=-0.045  Sum_probs=91.5

Q ss_pred             ccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhh---------------
Q 013453          314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS---------------  378 (442)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  378 (442)
                      ..++++++..+.|++...+-++..+...++..+- .|..|.+++.++.++.+++.++..+-+...               
T Consensus       123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG-~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~  201 (735)
T KOG3626|consen  123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFG-SRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE  201 (735)
T ss_pred             hhhhcCCCCCcceeEeeecccchhhhhHhHHHhc-cccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence            4566899999999998888888888877555544 444677777777777777766654421100               


Q ss_pred             -------------------------------chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHH
Q 013453          379 -------------------------------GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG  427 (442)
Q Consensus       379 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  427 (442)
                                                     +...|+++++..++.|.+....++...+++-|.+.+++.....|+..++
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence                                           0114566677777777777778888889999999999999999999988


Q ss_pred             HHHHHhhhcccCC
Q 013453          428 MSLFKAAGPAGGG  440 (442)
Q Consensus       428 ~~~g~~~gp~i~G  440 (442)
                      ..+|-++|=.+++
T Consensus       282 ~~lGPaiGfllgS  294 (735)
T KOG3626|consen  282 AILGPAIGFLLGS  294 (735)
T ss_pred             HHhhhHHHHHHHH
Confidence            8887777755544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-05

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 73/444 (16%), Positives = 125/444 (28%), Gaps = 146/444 (32%)

Query: 87  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 224 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 256
           + A                        I +    L    +R   D       S  +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 257 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 299
           L     +V + +         K SL++  P  S+I +  ++           +LH     
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 300 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLE-- 348
            Y+    F      P  L    Y    +G  L        +T F ++        FLE  
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQK 506

Query: 349 -RILGPIMVARIAGVLTIPLLTSY-PYI--------AMLSGFGLAFLLNCASVV-----K 393
            R       A  + + T+  L  Y PYI         +++   L FL      +      
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYT 565

Query: 394 NLLSVSIIT---GLFILQNRAVDQ 414
           +LL ++++     +F   ++ V +
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQR 589

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 45/374 (12%), Positives = 103/374 (27%), Gaps = 55/374 (14%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 250
           G                 +F     F+  L          +  F   +            
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193

Query: 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWA 309
                +   A+A               L +   L   S+ V  V   +D+   +  + + 
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT 369
           +           T++ G V  +               + RI G      +AG +    + 
Sbjct: 249 SFFATGE---QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304

Query: 370 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGM 428
              +        +   L+   V        ++ G F       +         +      
Sbjct: 305 GSSFATSALEVVILKTLHMFEV------PFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358

Query: 429 SLFKAAGPAGGGAL 442
            L         G +
Sbjct: 359 QLAMIFMSVLAGNM 372

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 30/217 (13%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 145 LGSLNGLL-GPIKAYACEI----FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199
           L  L G   G             + ++ +   +S  + A  +G  I P L          
Sbjct: 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA---- 180

Query: 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-----PETLHRHNDDDDSCDVSY 254
                   +                    + +A F                 +   +   
Sbjct: 181 --WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EYKN 224

Query: 255 DALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291
           D  +  + + ++E   +    + +L N  L    I  
Sbjct: 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 48/324 (14%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVL 140
           AG + S+F FG  +  +  G++  +   K  II G     +   LF  +    N+ + ++
Sbjct: 63  AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122

Query: 141 TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL------ 193
             F++ +  G L      +   +  E      L+   T    G II    G  L      
Sbjct: 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182

Query: 194 --------AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
                       E+      S  L  + PY +    + L A  + +     P     ++ 
Sbjct: 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHS 240

Query: 246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 305
           D                    ++G  +     L +      +++    +     A     
Sbjct: 241 D-------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281

Query: 306 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-----LGPIMVARIA 360
             +A           +       L  T     + + +    + R      L    +  +A
Sbjct: 282 IRYAVEE----IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337

Query: 361 GVLTIPLLTSYPYIAMLSGFGLAF 384
             L       +  +  L+      
Sbjct: 338 LCLISAFAGGHVGLIALTLCSAFM 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.59
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.35
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.3
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.03
2xut_A	524	Proton/peptide symporter family protein; transport	98.84

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.2e-37  Score=295.59  Aligned_cols=368  Identities=12%  Similarity=0.036  Sum_probs=278.7

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      ++.+...++..+...++.....+.+|.+.+++ .+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            44555677788888888888999999999999 99999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc----cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhc
Q 013453          120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (442)
Q Consensus       120 ~~~~i~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (442)
                      ++.+++.+++++    +++++.++++|+++|++.+...+ ..+++.|++|+++|++++++.+.+.++|.+++|.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    99999999999999999998888 5999999999999999999999999999999999999988


Q ss_pred             cccccCCCccc-ccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccc
Q 013453          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (442)
Q Consensus       195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (442)
                      +       ..| ||+.+         .+.+++.++. ++..+++||++++.+.+++++.+..++.+ ..++.+++....+
T Consensus       180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (451)
T 1pw4_A          180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-YNEKAEQELTAKQ  242 (451)
T ss_dssp             H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH
T ss_pred             H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-chhhhhccccccc
Confidence            7       455 66555         6666666554 44556788877654322211111000000 0000000011111


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-
Q 013453          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-  351 (442)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  351 (442)
                      ...++.+++|.++...+..++..........+.+.|+...     +|+++.+.+...+..+++.+++.+ +.+++.||+ 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~  316 (451)
T 1pw4_A          243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVF  316 (451)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred             chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            1146778899999888888888888888888888877642     689999999999999999999988 667777887 


Q ss_pred             -chhHHHHHHHHHHH-HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHH
Q 013453          352 -GPIMVARIAGVLTI-PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  429 (442)
Q Consensus       352 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  429 (442)
                       ++|+.+..+..+.. +++.++.+..   ....+. .....+..+.+.....+....+..|.+|++.|+++.|+.+...+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  392 (451)
T 1pw4_A          317 RGNRGATGVFFMTLVTIATIVYWMNP---AGNPTV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  392 (451)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTTSCC---TTCHHH-HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhc---ccCHHH-HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence             88887776665554 4443332211   112222 22333333444455666777889999999999999999999999


Q ss_pred             H-HHhhhcccCCC
Q 013453          430 L-FKAAGPAGGGA  441 (442)
Q Consensus       430 ~-g~~~gp~i~G~  441 (442)
                      + |..++|.+.|+
T Consensus       393 ~~g~~~~~~~~g~  405 (451)
T 1pw4_A          393 LGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9 99999988764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.5e-36  Score=285.41  Aligned_cols=363  Identities=14%  Similarity=0.126  Sum_probs=275.4

Q ss_pred             CChhhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHH
Q 013453           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (442)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (442)
                      .+++.+..+++..+...+......+.+|.+.+++|.+..+      .|++.+.+.+++.++++++|+++||+|||+++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~   96 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence            3455666777788888888889999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---hccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       118 ~~~~~~i~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      +.++.+++.+++   +++++++.++++|++.|++.+...+ ..+++.|++|+++|++++++.+.+.++|..++|.+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A           97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   8899999999999999999999888 599999999999999999999999999999999999999


Q ss_pred             c-cccccC----------CCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc--cccCCCCCCCCccchhhhhhhhhh
Q 013453          194 A-QPAEKY----------PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESA  260 (442)
Q Consensus       194 ~-~~~~~~----------~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~  260 (442)
                      . +..+..          ....+|+... ..+|+.++.+.+...++..+..++.  ||++++.+++++            
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------  243 (438)
T 3o7q_A          177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------  243 (438)
T ss_dssp             HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------------
T ss_pred             HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc------------
Confidence            8 411000          0000000000 0116666666666555554443333  443322111110            


Q ss_pred             hhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHH-hcCCcccCcccCChhHHHHHHHHHHHHHHHH
Q 013453          261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF  339 (442)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (442)
                             +++.+...++++|+|.++...+..++..........+.+.| ..+.     +|++..+.+.......++.+++
T Consensus       244 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~  311 (438)
T 3o7q_A          244 -------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_dssp             -------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence                   01112345678899999998888888888888888888887 5532     5889999999999999999999


Q ss_pred             HhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhH
Q 013453          340 QLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA  419 (442)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  419 (442)
                      .+ +.+++.||++||+.+..+..+..++..++.+..     ..+. ... ..+.+++.....+....+..|.+|++ +++
T Consensus       312 ~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  382 (438)
T 3o7q_A          312 RF-TGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----GHVG-LIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKY  382 (438)
T ss_dssp             HH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----HHHH-HHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred             HH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----CcHH-HHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence            88 777788888999998888877777766554432     1111 111 23333444556677888888888866 888


Q ss_pred             HHHHHHHHHHHHHhhhcccCCC
Q 013453          420 ANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       420 ~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      +.++.. ...+|++++|.+.|+
T Consensus       383 ~~~~~~-~~~~g~~~~~~~~g~  403 (438)
T 3o7q_A          383 GSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_dssp             HHHHHH-HTTHHHHHHHHHHHH
T ss_pred             hhhHHH-HHHHHHHHHHHHHHH
Confidence            888877 677999999988774

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=3.4e-35  Score=281.81  Aligned_cols=378  Identities=13%  Similarity=0.034  Sum_probs=264.6

Q ss_pred             HHHHHHhHhcchhhchhHHHHHHHhcccccc--hhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      .++.++.+++...++..+|.+.++++.+...  ...+...|++.+.+.+|..++++++|+++||+|||++++++.+++.+
T Consensus        18 ~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i   97 (491)
T 4gc0_A           18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI   97 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4456677778888899999999988654322  22344589999999999999999999999999999999999999999


Q ss_pred             HHHHHh------------------ccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHH
Q 013453          125 FNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (442)
Q Consensus       125 ~~~~~~------------------~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (442)
                      ++++++                  +++|+++++++|+++|++.|...+ +..+++|+.|+++|++..++.+.+..+|..+
T Consensus        98 ~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~  177 (491)
T 4gc0_A           98 SGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL  177 (491)
T ss_dssp             HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence            999988                  478999999999999999998888 5999999999999999999999999999999


Q ss_pred             HHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhh--hhhhhhhhhh
Q 013453          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESASAE  263 (442)
Q Consensus       186 g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~  263 (442)
                      ++.++..+..       ..++.... .+.||.++....+..++..+..+++||+|++...+++.++..  .++.......
T Consensus       178 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          178 VYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             HHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence            9999888876       44444443 566888888888888888888889999998754333322221  1111111000


Q ss_pred             h--------hhhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHH
Q 013453          264 V--------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS  335 (442)
Q Consensus       264 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (442)
                      +        ..++++........++.+..........+...........+..+     ..+..+.+...........++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  324 (491)
T 4gc0_A          250 TQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE-----VFKTLGASTDIALLQTIIVGVI  324 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH-----HHHHSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH-----HHHhcCCCccchhhHHHHHHHH
Confidence            0        00111111122223333433333332222222211111112111     1223466666666677777788


Q ss_pred             HHHHHhhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChh
Q 013453          336 LLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD  415 (442)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (442)
                      .+++.+ +..++.||+|||+.+..+.....+++..+........ ..+.......++...+..+..+..+.+.+|.+|++
T Consensus       325 ~~~~~~-~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~  402 (491)
T 4gc0_A          325 NLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  402 (491)
T ss_dssp             HHHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred             HHHHHH-HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence            888877 6777888889999998888887777666655443322 22333333333344445556677889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhhhcccC
Q 013453          416 QRGAANGIAMTGMSLFKAAGPAGG  439 (442)
Q Consensus       416 ~~g~~~g~~~~~~~~g~~~gp~i~  439 (442)
                      .|+++.|+.+..+++++++++.+.
T Consensus       403 ~R~~~~g~~~~~~~~~~~i~~~~~  426 (491)
T 4gc0_A          403 IRGKALAIAVAAQWLANYFVSWTF  426 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998887653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=1.3e-34  Score=267.91  Aligned_cols=343  Identities=13%  Similarity=0.129  Sum_probs=259.5

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHH
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (442)
                      +.+++..++..++.....+.+|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            4566777888888899999999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhccccccCCC
Q 013453          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (442)
Q Consensus       124 i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (442)
                      ++.++.+++++++.+++.|++.|++.+...+ ..+++.|++|+|+|++++++.+.+..+|..++|.+++++.+       
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  149 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence            9999999999999999999999999998888 59999999999999999999999999999999999999987       


Q ss_pred             cccccccccCCcChhHHHHHHHHHHHHHH-HHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccccccccccccc
Q 013453          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (442)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (442)
                               ..+|+..+.+.++..++..+ ..+.+||+++++++++                      +.....++++|+
T Consensus       150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~  198 (375)
T 2gfp_A          150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT----------------------RLLTSYKTLFGN  198 (375)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC----------------------CTTTCSTHHHHH
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc----------------------cHHHHHHHHhcC
Confidence                     34456665777766666554 4556777654432211                      122345678888


Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHHHHH
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (442)
                      |+++...+..++..........+.|.|.     .+.+|+++.+.+.......++.+++.. ..+++.||.+++  ...+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~~--~~~~~  270 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLM-----GAVLGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTL--MWQSV  270 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSS-----HHHHHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHHH--HHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHH
Confidence            9888877777776655555544433332     233788999999999999999999888 666677776662  22222


Q ss_pred             HH-HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCC
Q 013453          362 VL-TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  440 (442)
Q Consensus       362 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G  440 (442)
                      .. ...+...+...... ....+. ......+.+.......+....+..|..| ++||++.|+.+...++|..++|.+.|
T Consensus       271 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g  347 (375)
T 2gfp_A          271 ICCLLAGLLMWIPDWFG-VMNVWT-LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA  347 (375)
T ss_dssp             HHHHHTSSSSSHHHHHH-HHHHHH-HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred             HHHHHHHHHHHHHhhhc-cccHHH-HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            22 22222211111100 111222 2222333334444556777888889888 89999999999999999999999987


Q ss_pred             C
Q 013453          441 A  441 (442)
Q Consensus       441 ~  441 (442)
                      .
T Consensus       348 ~  348 (375)
T 2gfp_A          348 M  348 (375)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.8e-31  Score=255.92  Aligned_cols=373  Identities=13%  Similarity=0.098  Sum_probs=244.0

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHH-HH-----hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCCch
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP  113 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~  113 (442)
                      +.++.++...+...+......+.++.+. ++     +|.+..+      .+++.+.+.++..++++++|+++|| +|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            4556666677777776666656665554 44     8999999      9999999999999999999999999 89999


Q ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccc--hhhhhhhhhHhhhhHHHHHHHhh
Q 013453          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG  190 (442)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~  190 (442)
                      ++..+.++..++.+++++++|++.++++|+++|++.+...+ ..+++.|++|+++  |+.++++++.+.++|..++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888 5999999999988  77788889999999999999999


Q ss_pred             hhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc-cccCCCCCCCC-c--cchhhhhhhhh-------
Q 013453          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDD-D--SCDVSYDALES-------  259 (442)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~-~--~~~~~~~~~~~-------  259 (442)
                      +.+.+                ..+|+..+.+.++..++..+...+. |+..++..+++ +  +.++..+..+.       
T Consensus       167 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  230 (491)
T 4aps_A          167 GAAQE----------------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG  230 (491)
T ss_dssp             HHHHH----------------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred             HHHHh----------------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence            99988                3445555566666555554433322 32222111111 1  11111010000       


Q ss_pred             ------------hhhhhh------------------hhhcccccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHh
Q 013453          260 ------------ASAEVK------------------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA  309 (442)
Q Consensus       260 ------------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (442)
                                  ..+.++                  +..++......+..+....+...+...+...........++.|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4aps_A          231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA  310 (491)
T ss_dssp             HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred             HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                        000000                  00000111111111222334444455555555555666666666


Q ss_pred             cCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchhHHHH-----HHHHHHHHHHHHHHHHHHhh---chh
Q 013453          310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAMLS---GFG  381 (442)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~  381 (442)
                      ...     .+.+..+.+.......+..+++.. +..++.||.+||+...     .+..+..+++.++.......   ...
T Consensus       311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4aps_A          311 AER-----VDSSWFPVSWFQSLNPLFIMLYTP-FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV  384 (491)
T ss_dssp             HHS-----CCCSSSCSGGGTTHHHHHHHHHHH-HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred             HHH-----hccCccCHHHHhccchHHHHHHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            543     344445566666777777777777 5555677777765433     55555566655554432110   011


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHHHhhhcccCCC
Q 013453          382 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  441 (442)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~gp~i~G~  441 (442)
                      .........++.+.......+....+..|..|++.|+++.|+.+...++|.+++|.+.|+
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~  444 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL  444 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233333333444444567778899999999999999999999999999999988775

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.96  E-value=1.9e-28  Score=229.46  Aligned_cols=357  Identities=10%  Similarity=0.087  Sum_probs=224.1

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHHHH-HhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .++++.+....+...+......+.+|.+.+ ++|.+..+      .|++.+.+.+++.++++++|+++||+|||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~   79 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            345555666666666667777888888654 58999999      99999999999999999999999999999999998


Q ss_pred             HHHHHHHHH---HHhccchHH-HHHHHHHHHHhhcchhhH-HHHHhhhhccc--cchhhhhhhhhHhhhhHHHHHHHhhh
Q 013453          119 TASVVIFNT---LFGLSVNFW-MAVLTRFLLGSLNGLLGP-IKAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGG  191 (442)
Q Consensus       119 ~~~~~i~~~---~~~~a~~~~-~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (442)
                      ..++.+...   ...+++... .++..+++.|++.+...+ ....+.++.++  ++|+...+.......+|..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~  159 (417)
T 2cfq_A           80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            887755322   122322221 234556666665555443 23334444432  45677788888889999999999999


Q ss_pred             hhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccc
Q 013453          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (442)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (442)
                      ++.+        .+         |+.++++.++..++..+..++.+|++++..+++++.++             ++++..
T Consensus       160 ~l~~--------~~---------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  209 (417)
T 2cfq_A          160 IMFT--------IN---------NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-------------NHSAFS  209 (417)
T ss_dssp             HHHH--------HC---------SHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS-------------CCCCCC
T ss_pred             HHHH--------hc---------hhHHHHHHHHHHHHHHHHHHHcCccccccccccccccc-------------cccccc
Confidence            9875        12         44444554444444433434444332211110000000             000011


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013453          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (442)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (442)
                      ....++++++|+++...+..+........+..++|.|+....  +..+.+....+.......++.+++.+ ..+++.||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~  286 (417)
T 2cfq_A          210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF--ATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRI  286 (417)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            123456788888877666555444444445556666664321  11233455667888887888888877 777788888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHH-HHHHHH
Q 013453          352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSL  430 (442)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~  430 (442)
                      +||+.+..+..+..+....+.+.   +  ..+. ......+.+.......+....+.+|..|++.||++.++. +..+.+
T Consensus       287 g~~~~l~~~~~~~~~~~~~~~~~---~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l  360 (417)
T 2cfq_A          287 GGKNALLLAGTIMSVRIIGSSFA---T--SALE-VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL  360 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTC---C--SHHH-HHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHh---c--cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence            99998877776666554443221   1  1222 112222222222334455677899999999999999994 888889


Q ss_pred             HHhhhcccCCC
Q 013453          431 FKAAGPAGGGA  441 (442)
Q Consensus       431 g~~~gp~i~G~  441 (442)
                      |++++|.+.|+
T Consensus       361 g~~~gp~l~G~  371 (417)
T 2cfq_A          361 AMIFMSVLAGN  371 (417)
T ss_dssp             HHHHHTHHHHT
T ss_pred             HHHHhhhhHHH
Confidence            99999998875

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.95  E-value=1.9e-27  Score=229.83  Aligned_cols=171  Identities=15%  Similarity=0.183  Sum_probs=142.9

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHH-HHHHhc------ccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc-CCch
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYF-MIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKP  113 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~  113 (442)
                      .++.+++..++..+......+.++. +.+++|      .+..+      .+++.+.+.++..++.++.|+++||+ |||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~   86 (524)
T 2xut_A           13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYN   86 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            3444556666666666666666665 456789      99999      99999999999999999999999999 9999


Q ss_pred             hhHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhh---hhHhhhhHHHHHHH
Q 013453          114 VIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLST---VSTAWGIGLIIGPA  188 (442)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~  188 (442)
                      ++.++.++..++.+++++++ +++.+++.|++.|++.+...+ ..+++.|++|+++|+++.+.   .+.+.++|..++|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~  166 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL  166 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999 999999999999999998888 59999999999999876666   99999999999999


Q ss_pred             hhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHh
Q 013453          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (442)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (442)
                      +++.+.+                ..+|+..+.+.++..++..+..+
T Consensus       167 ~~~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          167 SMPLLLK----------------NFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             TSTHHHH----------------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc----------------cccHHHHHHHHHHHHHHHHHHHH
Confidence            9999987                44455555776666555544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.59  E-value=7e-15  Score=138.93  Aligned_cols=174  Identities=13%  Similarity=0.068  Sum_probs=142.6

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM  117 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~~~~  117 (442)
                      +.++...+..++............|.+.++ +|.+..+      .+++.+...++..++.++.|++.||+  |||+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  325 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence            455566666667777777777888888777 8999888      99999999999999999999999999  99999988


Q ss_pred             HHHHHH-HHHHHHhcc--chHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhh-HHHHHHHhhhh
Q 013453          118 GTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (442)
Q Consensus       118 ~~~~~~-i~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~  192 (442)
                      +..+.. ++.++..+.  .+.+.+.+..++.|++.+...+ ...++.|.+|+++|++++++.+....+ |..++|.+.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877766 677777666  3778888888899998777777 589999999999999999999999999 99999999999


Q ss_pred             hccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhc
Q 013453          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (442)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (442)
                      +.+                ..+|+..+.+.+++.++..+..+++
T Consensus       406 l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          406 TVD----------------FFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            998                4455666677776666665544444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.50  E-value=2.5e-13  Score=126.81  Aligned_cols=141  Identities=18%  Similarity=0.129  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~  162 (442)
                      .+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+ ...++.|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888888889999999999999999999999999988888888888888888888888888887666655 58899999


Q ss_pred             ccccchhhhhhh-hhHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHH-HhhccccC
Q 013453          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (442)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (442)
                      +|++.|+++.+. ++....+|..++|.++|++.+                ..++...+.+.+++.++..+. +...||++
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999998 588889999999999999987                334455556666666665544 34455433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=3.3e-13  Score=126.90  Aligned_cols=145  Identities=11%  Similarity=0.055  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHhHhcchhhchhHHHH-HHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      .++...+..++............|.+ .++ +|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  332 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            34444555555555555666677777 665 4999888      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       120 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      ++..++.++..+.++.+.++.. ++.|++.+...| ..++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          333 LIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999999988888887765554 888888888777 588889999866 888888777 566999999999999998

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.35  E-value=6.3e-12  Score=119.99  Aligned_cols=146  Identities=10%  Similarity=-0.025  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhH-----H
Q 013453           44 FSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----M  117 (442)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~-----~  117 (442)
                      ..+++..+............+|.+.++ ++.+..+      .+++.+...++..++.++.|++.||+|||+...     .
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~  359 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV  359 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence            344444444444455555666666655 5666566      788888899999999999999999999987665     7


Q ss_pred             HHHHHHHHHHHHhccc---------hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHH
Q 013453          118 GTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (442)
Q Consensus       118 ~~~~~~i~~~~~~~a~---------~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (442)
                      +.++.+++.++..+..         +.+.+.+.-++.|++.+...+ ..+++.|.+|+++|+++.++.+....+|..++|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~  439 (491)
T 4aps_A          360 GLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA  439 (491)
T ss_dssp             HHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666543         777788888999999888777 589999999999999999999999999999999


Q ss_pred             Hhhhhhcc
Q 013453          188 ALGGFLAQ  195 (442)
Q Consensus       188 ~~~~~l~~  195 (442)
                      .+.+.+.+
T Consensus       440 ~~~~~~~~  447 (491)
T 4aps_A          440 QLVTLYNA  447 (491)
T ss_dssp             HHGGGGGG
T ss_pred             HHHHHHhc
Confidence            99988875

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.30  E-value=8.7e-11  Score=112.07  Aligned_cols=181  Identities=13%  Similarity=0.085  Sum_probs=122.5

Q ss_pred             HHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHH
Q 013453           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (442)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i  124 (442)
                      ......+....+.+.+....|.+.++.+.+...      .........+...++.++.+++.||+|||+.++.+.....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            344444455555566666778888888887776      67777778888899999999999999999999998888877


Q ss_pred             HHHHHhcc-----chHHHHHHHH-HHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcccc
Q 013453          125 FNTLFGLS-----VNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (442)
Q Consensus       125 ~~~~~~~a-----~~~~~l~~~r-~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (442)
                      +.+..+..     ++...+...- +..+.+.+ ..+ ...+.+|.+|.+.|++++++......+|..+++.+...+.+..
T Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~  433 (491)
T 4gc0_A          355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS  433 (491)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77655432     2222222222 22222333 344 5789999999999999999999999999999988877765411


Q ss_pred             ccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCC
Q 013453          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHR  242 (442)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~  242 (442)
                      .       ...   ..++...+++.+.++++. ++.++++||++.+
T Consensus       434 ~-------~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          434 W-------LVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             H-------HHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             H-------HHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            0       000   112233445555555555 4566789998654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.03  E-value=3.7e-11  Score=110.37  Aligned_cols=146  Identities=13%  Similarity=0.078  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHH-hcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +.++...+..++............|.+.++ +|.++.+      .+++.+...++..++.++.+++.||+|+|  +..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~  270 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSV  270 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            334445555555555555556666666554 8998888      99999999999999999999999999873  23333


Q ss_pred             HH-HHHHHH--HHhc--cchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhh
Q 013453          120 AS-VVIFNT--LFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (442)
Q Consensus       120 ~~-~~i~~~--~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (442)
                      .. ...+..  ....  .++.+.+++..++.|++.+...+ ..+++.|..| ++|+++.++.+....+|..++|.+.+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          271 ICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 222222  1222  23677777888999999888877 5899999998 8999999999999999999999999998


Q ss_pred             cc
Q 013453          194 AQ  195 (442)
Q Consensus       194 ~~  195 (442)
                      .+
T Consensus       350 ~~  351 (375)
T 2gfp_A          350 PQ  351 (375)
T ss_dssp             HH
T ss_pred             hc
Confidence            76

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.84  E-value=2.7e-08  Score=95.59  Aligned_cols=149  Identities=9%  Similarity=-0.021  Sum_probs=110.8

Q ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCccc------CChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-chh
Q 013453          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN------YSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPI  354 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  354 (442)
                      +.++...+..++..........+++.|+...     +|      +++.+.+.+.+...++..++.+ ..+++.||+ |||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r   85 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-----LLLSIPEELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKY   85 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcch
Confidence            4566666777777777777777777776532     45      8999999999999999999988 777788888 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHH---HHHHHHHH
Q 013453          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI---AMTGMSLF  431 (442)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g  431 (442)
                      +.+..+.++..++.++..+..    ...+ .+.+..++.+.+.....+...+++.|.+|+++|+++.+.   .+...++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  160 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFE----HSVQ-GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG  160 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS----SCHH-HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----ccHH-HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence            999888888777776665532    0122 223333344445555668888999999999999877666   88999999


Q ss_pred             HhhhcccCCC
Q 013453          432 KAAGPAGGGA  441 (442)
Q Consensus       432 ~~~gp~i~G~  441 (442)
                      ..++|.++|+
T Consensus       161 ~~~g~~~~~~  170 (524)
T 2xut_A          161 SFFASLSMPL  170 (524)
T ss_dssp             HHHHHHTSTH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-12
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 45/365 (12%), Positives = 90/365 (24%), Gaps = 28/365 (7%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174

Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 258
                     +     +       +  A  V + AF +     +        +   D  +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 318
             + + ++E   +    + +L N  L    I      L      +    +    K     
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285

Query: 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS 378
             S        A    +LL   +S   F        +       +   +    P      
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345

Query: 379 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA-AGPA 437
                 ++              +  + +       +   G A G       L  + A  A
Sbjct: 346 DMICMIVIGFL-------IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 438 GGGAL 442
             G  
Sbjct: 399 IVGYT 403

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 40/410 (9%), Positives = 93/410 (22%), Gaps = 54/410 (13%)

Query: 42  ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
             +   +        + + FPF   ++     I+       S  G + ++      L   
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI----- 155
            +GL++D+ G +  ++     +++    F + +   +      +   + G+         
Sbjct: 62  LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 156 --KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213
                A                     +G  +G ++ G +                    
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----------------N 165

Query: 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT 273
             F+  L          +  F   +        +           +  +    +   E  
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV--------GANHSAFSLKLALELF 217

Query: 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 333
            +  L      +  +           A                    +T       +I  
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF 277

Query: 334 FSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK 393
           F+ L+           + G IM  RI G            +  L  F + F         
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF--------- 328

Query: 394 NLLSVSIITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPAGGGAL 442
                 ++ G F       +         +       L         G +
Sbjct: 329 ------LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.55
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.39

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-36  Score=279.90  Aligned_cols=371  Identities=12%  Similarity=0.018  Sum_probs=258.7

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (442)
                      ..+..++++.+...++...+....|.+. |+|.|.+|      .|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus        25 ~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          25 QIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3344555566666667677777777665 68999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc----hHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhhHHHHHHHhhhhhcc
Q 013453          121 SVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (442)
Q Consensus       121 ~~~i~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (442)
                      +.+++.+++++++    +++.+++.|++.|++.|...+ ..+++.|++|+++|++++++.+.+..+|..++|.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999999988764    778999999999999888887 59999999999999999999999999999999999988776


Q ss_pred             ccccCCCcccccccccCCcChhHHHHHHHHHHHH-HHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhcccccc
Q 013453          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (442)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (442)
                      .      ..+||+.+         .+.+.+.++. ++.+.+.+|+|+.......++.+. +..++..++.+++....+..
T Consensus       178 ~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  241 (447)
T d1pw4a_         178 W------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQIF  241 (447)
T ss_dssp             H------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHHH
T ss_pred             h------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhHH
Confidence            2      23454444         5555555544 444555666655433222111111 11111111111122222334


Q ss_pred             cccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhchh
Q 013453          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (442)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (442)
                      .+..++++.++......++..........+.+.|+..     ..+++..+.+.......+..+++.+ +.+++.||.+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~  315 (447)
T d1pw4a_         242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-----VKHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRG  315 (447)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-----BSCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTT
T ss_pred             HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccc-----ccccccchhhhhhhcchhhhhhhhh-hhhhhhhhcccc
Confidence            5667888888888888888888777787888877654     3688999999999999999999988 666677776655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHHHHHHHHH-Hh
Q 013453          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF-KA  433 (442)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g-~~  433 (442)
                      ............................+ ...+..+..++......+.......|.+|++.||++.|+.+...+++ ..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~  394 (447)
T d1pw4a_         316 NRGATGVFFMTLVTIATIVYWMNPAGNPT-VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV  394 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSCCTTCHH-HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            43333332222222222221111111222 23333333444555666777888899999999999999999988874 56


Q ss_pred             hhcccCCC
Q 013453          434 AGPAGGGA  441 (442)
Q Consensus       434 ~gp~i~G~  441 (442)
                      ++|.+.|+
T Consensus       395 ~~~~~~g~  402 (447)
T d1pw4a_         395 AASAIVGY  402 (447)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            67777653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-26  Score=214.65  Aligned_cols=357  Identities=10%  Similarity=0.064  Sum_probs=235.4

Q ss_pred             hhhHHHHHHHHHHhHhcchhhchhHHHH-HHHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHH
Q 013453           40 ITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (442)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (442)
                      .++++.+.+..++..+..+...|.+|.+ .+++|.|..+      .|++.+++.++..++++++|+++||+||||+++++
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            4667788888888888888889999875 5678999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHH----HHHHHHHHhhcchhhH-HHHHhhhhcc--ccchhhhhhhhhHhhhhHHHHHHHhhh
Q 013453          119 TASVVIFNTLFGLSVNFWMA----VLTRFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGG  191 (442)
Q Consensus       119 ~~~~~i~~~~~~~a~~~~~l----~~~r~l~G~~~g~~~~-~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (442)
                      ..+..++..+..+..+....    ++.+.+.+.+.+.... ......+..+  .+++.+..+........+..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            99999999888887766554    3444444444444333 3333333332  234556777888888999999999999


Q ss_pred             hhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhhhhhhhhhhhccc
Q 013453          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (442)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (442)
                      .+.+                ...++..........+...+..+..+|++...++++++++..              ++..
T Consensus       160 ~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  209 (417)
T d1pv7a_         160 IMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFS  209 (417)
T ss_dssp             HHHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCC
T ss_pred             cccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------cccc
Confidence            9886                112222223333344444555566666655443322111110              0011


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHhcCCcccCcccCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013453          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (442)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (442)
                      .....+.++++..+......................+...  ..+..+.+....+.......++..++.. ..+++.||.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~  286 (417)
T d1pv7a_         210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS--FFATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRI  286 (417)
T ss_dssp             HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred             ccccccccccccccchhhhhHHHHHHHHhhhccccccccc--cccccccchhhhcccccccccccccchh-hhhhhhccc
Confidence            1112233344444443333333333333333333333322  2233456677778888888888888887 677777888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhhHHHHHH-HHHHHH
Q 013453          352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSL  430 (442)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~  430 (442)
                      ++++.+..+..+..+....+.+..     ..+. ......+.+.......+....+..|.+|++.|+++.|+. +....+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (417)
T d1pv7a_         287 GGKNALLLAGTIMSVRIIGSSFAT-----SALE-VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL  360 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCC-----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHH
T ss_pred             ccccchhhhHHHHHHhhhcccccc-----ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence            999998888887777766655432     2222 233333444455566788888999999999999999986 456779


Q ss_pred             HHhhhcccCCC
Q 013453          431 FKAAGPAGGGA  441 (442)
Q Consensus       431 g~~~gp~i~G~  441 (442)
                      |.+++|.+.|+
T Consensus       361 g~~i~~~~~G~  371 (417)
T d1pv7a_         361 AMIFMSVLAGN  371 (417)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988775

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3.2e-15  Score=136.73  Aligned_cols=140  Identities=18%  Similarity=0.144  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcchhhH-HHHHhhhh
Q 013453           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (442)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~  162 (442)
                      .+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+ ..+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888889999999999999999999999999999999999999999999999999999999999888888 59999999


Q ss_pred             ccccchhhhhhhh-hHhhhhHHHHHHHhhhhhccccccCCCcccccccccCCcChhHHHHHHHHHHHHHH-HHhhcccc
Q 013453          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET  239 (442)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~  239 (442)
                      +|+++|++..+.. +....+|..++|.++|++.+                ..+++..+.+.+++.++..+ ..+.++++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999975 56778999999999999998                44455555777666665544 44555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=7.6e-13  Score=122.36  Aligned_cols=170  Identities=12%  Similarity=0.027  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHhHhcchhhchhHHHHH-HHhcccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccCCchhhHHHH
Q 013453           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (442)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (442)
                      +.++.+....++............|.+. +.++.+..+      .++..+...++..++.++.|++.||++||+......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  322 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  322 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence            3444455555555555555555566554 456888888      999999999999999999999999999876544333


Q ss_pred             HHH---HHHHHHHh--ccchHHHHHHHHHHHHhhcchhhH-HHHHhhhhccccchhhhhhhhhHhhhh-HHHHHHHhhhh
Q 013453          120 ASV---VIFNTLFG--LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (442)
Q Consensus       120 ~~~---~i~~~~~~--~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~  192 (442)
                      ...   .++.....  ...+.+...+.-++.|++.+...+ ...+..|.+|+++|+++.|+.+....+ |.+++|.+.++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~  402 (447)
T d1pw4a_         323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  402 (447)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322   22222222  245777778888888888777666 588999999999999999999887776 56778999999


Q ss_pred             hccccccCCCcccccccccCCcChhHHHHHHHHHHHHHHH
Q 013453          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (442)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (442)
                      +.+                ..+|+..+.+.+...++..+.
T Consensus       403 ~~~----------------~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         403 TVD----------------FFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHH----------------SSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------------HhChHHHHHHHHHHHHHHHHH
Confidence            998                444555556655555555433