Citrus Sinensis ID: 013471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Secondary Structure (PSIPRED)
cEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHcccEEEccccccccccccccccccccHHHcHHHHHccccccccHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccEEEccccHHHHHHHHHHHccccHHHHHHHHccccccEEccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHccHcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEEEEcccccEEEEEccc
Coil and Loop (DISEMBL)
mefaffrglpenlsiLDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMpyiekvslfkgcsseFINQIVIRVHeefflpgevimEQGNVVDQLYFVCHgvlgkesnlRLKQLKSDITFHIGKHEAELALRVnsaayhgdlyqlkgliragadpnktdydgrsplhlatsrgyeDITLFLIQKgvdinikdkfgntplleaikcghDGVTSLLVKEgaslnvddagsFLCTAVARGDSDFLKRVLsngvdpssrdydhrtplhvAASEGLYLMAKLLLEAGAsvftkdrwgntpldegrmcgnKNLIKLLEDAectqlsefhycsqgmidkmhprkctvfpfhpwdekvhrrhgiVLWVPHNIEELIKLAVdkldfpdghsilsedggkildvdmindgQKLYLISETQ
Flexible Loop (DISEMBL)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNgvdpssrdydhrTPLHVAASEGLYLMAKLLLEAGASVFTKDRwgntpldegrmcGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILsedggkildvdMINDGQKLYLISETQ
Low Complexity Region (SEG)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Disordered region (IsUnstruct)
**FAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGAD****DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG********DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLI****
Disordered Region (DISOPRED)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISE**
Disordered Region (DISEMBL)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Disordered Region (DISPRO)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q9M8S6	828	Potassium channel SKOR OS	yes	no	0.692	0.369	0.696	1e-125
Q94A76	820	Potassium channel GORK OS	no	no	0.798	0.430	0.586	1e-121
Q653P0	858	Potassium channel KOR1 OS	yes	no	0.680	0.350	0.618	1e-114
Q7XUW4	719	Potassium channel KOR2 OS	no	no	0.472	0.290	0.584	2e-72
Q75HP9	855	Potassium channel AKT2 OS	no	no	0.846	0.437	0.252	1e-25
Q38998	857	Potassium channel AKT1 OS	no	no	0.588	0.303	0.302	4e-25
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.441	0.208	0.305	2e-24
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.441	0.208	0.305	2e-24
Q9SCX5	880	Probable potassium channe	no	no	0.350	0.176	0.358	2e-24
Q8GXE6	888	Potassium channel AKT6 OS	no	no	0.366	0.182	0.349	2e-24

>sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/306 (69%), Positives = 258/306 (84%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKESN+R+KQL+SDITFHI K EAELAL++NSAA++GDLYQLK LIRAG DPNKTDYDGR
Sbjct: 523 GKESNVRIKQLESDITFHISKQEAELALKLNSAAFYGDLYQLKSLIRAGGDPNKTDYDGR 582

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA SRGYEDITL+LIQ+ VD+NIKDK G+TPLLEAIK G+D V +LLVKEGA+LN+
Sbjct: 583 SPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGNDRVAALLVKEGATLNI 642

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           ++AG+FLCT VA+GDSDFLKR+LSNG+DP+S+DYDHRTPLHVAASEG Y++A  L+EA A
Sbjct: 643 ENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYDHRTPLHVAASEGFYVLAIQLVEASA 702

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
           +V  KDRWGNTPLDE   CGNK LIKLLEDA+ +Q+S F   S+   DK++ +KCTV+  
Sbjct: 703 NVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKNSQISSFPSGSKEPKDKVYKKKCTVYFS 762

Query: 376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
           HP D K  RR GIVLWVP +IEELI+ A ++L+ P+   +LSED  KI+DVD+I+DGQKL
Sbjct: 763 HPGDSKEKRRRGIVLWVPRSIEELIRTAKEQLNVPEASCVLSEDEAKIIDVDLISDGQKL 822

Query: 436 YLISET 441
           YL  ET
Sbjct: 823 YLAVET 828

Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94A76|GORK_ARATH Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/375 (58%), Positives = 280/375 (74%), Gaps = 22/375 (5%)

Query: 72  VIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVC 131
           +I  ISQ   +   E   L +     F N + I  H+     G  I+   N++++     
Sbjct: 459 IICNISQPFTVRVCELCHLLRLDKQSFSNILEIYFHD-----GRTIL--NNIMEE----- 506

Query: 132 HGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD 191
                KESN R+K+L+SDI  HIGK EAELAL+VNSAA+ GD YQLK LIR+GADPNKTD
Sbjct: 507 -----KESNDRIKKLESDIVIHIGKQEAELALKVNSAAFQGDFYQLKSLIRSGADPNKTD 561

Query: 192 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 251
           YDGRSPLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+TPL EA+K G +GV  LLVKEGA
Sbjct: 562 YDGRSPLHLAACRGYEDITLFLIQEGVDVNLKDKFGHTPLFEAVKAGQEGVIGLLVKEGA 621

Query: 252 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311
           S N++D+G+FLCT VA+GDSDFLKR+LS+G++P+S DYDHRTPLHVAASEGL+LMAK+L+
Sbjct: 622 SFNLEDSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDYDHRTPLHVAASEGLFLMAKMLV 681

Query: 312 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMI-DKMHPRKC 370
           EAGASV +KDRWGN+PLDE R+CGNK LIKLLED +  Q S +    + +  +++  RKC
Sbjct: 682 EAGASVISKDRWGNSPLDEARLCGNKKLIKLLEDVKNAQSSIYPSSLRELQEERIERRKC 741

Query: 371 TVFPFHPWD--EKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHS--ILSEDGGKILDV 426
           TVFPFHP +  E+  R+HG+V+W+P N+E+LI  A  +L   DG S  +LSED G+I D+
Sbjct: 742 TVFPFHPQEAKEERSRKHGVVVWIPSNLEKLIVTAAKELGLSDGASFVLLSEDQGRITDI 801

Query: 427 DMINDGQKLYLISET 441
           DMI+DG KLY+IS+T
Sbjct: 802 DMISDGHKLYMISDT 816

Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q653P0|KOR1_ORYSJ Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/304 (61%), Positives = 243/304 (79%), Gaps = 3/304 (0%)

Query: 138 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 197
           E   R+KQL+SDITFHIGK EAEL LRVN+AA++GD++QLK LIRAGADP  TDYDGRSP
Sbjct: 541 EYGSRIKQLESDITFHIGKQEAELTLRVNNAAFYGDMHQLKSLIRAGADPKNTDYDGRSP 600

Query: 198 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           LHLA  +G+ED+  FL+ +GVDI++ DKFGNTPLLEA+K GHD V +LL  +GA L++++
Sbjct: 601 LHLAACKGFEDVVQFLLHEGVDIDLSDKFGNTPLLEAVKQGHDRVATLLFSKGAKLSLEN 660

Query: 258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
           AGS LCTAVARGD+DF++R L+ G DP++RDYDHR PLH+AA+EGLYLMAKLL++AGASV
Sbjct: 661 AGSHLCTAVARGDTDFVRRALAYGGDPNARDYDHRAPLHIAAAEGLYLMAKLLVDAGASV 720

Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHP 377
           F  DRWG TPLDEGR CG++ +++LLE A+  +LS +    + + DKMHPR+C+VFP HP
Sbjct: 721 FATDRWGTTPLDEGRRCGSRTMVQLLEAAKSGELSRYPERGEEVRDKMHPRRCSVFPHHP 780

Query: 378 WDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFP---DGHSILSEDGGKILDVDMINDGQK 434
           WD    RR G+V+W+PH IE L+  A +KL      +G  +L EDG ++LDVDM++DGQK
Sbjct: 781 WDGGERRREGVVVWIPHTIEGLVSSAQEKLGLAGSGEGLRLLGEDGARVLDVDMVHDGQK 840

Query: 435 LYLI 438
           LYL+
Sbjct: 841 LYLV 844

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR2 OS=Oryza sativa subsp. japonica GN=Os04g0445000 PE=2 SV=2

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 167/212 (78%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKE+  + KQL+SDIT+ + K E+EL L VN+AAYHGD+++LK LI AGADP+K+DYDGR
Sbjct: 503 GKETESKRKQLESDITYLLAKQESELVLGVNNAAYHGDIFRLKSLISAGADPSKSDYDGR 562

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           + LH+A  RGYE+I  FLIQ+G ++N  D+FGN+PLL+A+K GHD +TSLLV+ GA LN+
Sbjct: 563 TALHIAALRGYENIVRFLIQRGANVNSIDRFGNSPLLQAVKSGHDRITSLLVEHGAILNL 622

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           +DAG +LC  V  G  D LK++L  G+ P+ R+YD RTPLH+AA+EGL+L+A  L+E+GA
Sbjct: 623 EDAGGYLCRVVRGGRIDLLKKLLRFGISPNCRNYDQRTPLHIAAAEGLHLVASTLIESGA 682

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347
            +  KDRWGNTPLDEGR C +K L+++LE A 
Sbjct: 683 DIQAKDRWGNTPLDEGRRCSSKPLVRILEQAR 714

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75HP9|AKT2_ORYSJ Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 194/479 (40%), Gaps = 105/479 (21%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPG--------- 114
           L+  LP  +   I + L++P ++ V LFKG S E +  +V ++  E+  P          
Sbjct: 365 LMDQLPKSICKGICEYLFLPVVKDVYLFKGVSREVLLLMVTKMKPEYIPPKEDVIVQNEA 424

Query: 115 ------------EVIMEQGNVVDQLYFV--CHGVLGKESNL------------------R 142
                       EVI   G   +++       GV G+ S L                  R
Sbjct: 425 PDDVYIVVSGEVEVIYSDGEAEERVVATLGTRGVFGEVSALSDRPQSFTLRTRTLCQLLR 484

Query: 143 LKQ---------------------LKSDITFHIGKHE-------------AELALRVNSA 168
           L+Q                     LK  I  H  K E               +   + + 
Sbjct: 485 LRQAALKEAMQSKPEDSVVIIKNFLKHQIEMHDMKVEDLLGEDAAGEYDHGNIPCNLLTV 544

Query: 169 AYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN 228
           A  G+   L+ L++ G DP+  D  GR+ LH+A S+GYED  L L+++  ++NIKD  GN
Sbjct: 545 AATGNSSFLEDLLKVGMDPDVGDSKGRTALHIAASKGYEDCVLVLLKQACNVNIKDAQGN 604

Query: 229 TPLLEAIKCGHDGVTSLLVK-EGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           T L  AI   H  + ++L      S     AG  LC A  RGD D L+ +L +G+   S 
Sbjct: 605 TALWNAIAARHHKIFNILYHFARVSSPHHAAGDLLCLAARRGDLDTLRELLKHGLAVDSE 664

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN----KNLIKLL 343
           D D  T L VA +EG   +A+LL+  GASV   DR  +    +     +    + L+K  
Sbjct: 665 DRDGATALRVALAEGHADVARLLVLNGASV---DRAASHNEQQAAAAVSVDELRELMKTR 721

Query: 344 EDAECTQL---------------------SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKV 382
           E A    +                     S          D  H  + +++  HP+    
Sbjct: 722 ELAHPVTIVVDSPSPAAAAVIREVGSSGDSRNGRRQSARSDGAHWPRVSIYRGHPFVRNR 781

Query: 383 HRRHGIVLWVPHNIEELIKLAVDKLDFPDGHS-ILSEDGGKILDVDMINDGQKLYLISE 440
               G ++ +P  +EE   +  +KL      + I++++G +I  +D+I D  KL++++E
Sbjct: 782 SSEAGKLINLPGTMEEFRIIIEEKLKVDARKTLIMNDEGAEIDSIDVIRDNDKLFIVTE 840

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  116 bits (290), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 21/281 (7%)

Query: 71  DVIYKISQTLYMPYIEKVSLFKGCS------SEFINQIVIRVHEEFFLPGEVIMEQGNVV 124
           D+I +I    Y P +  V   + C       + F+N I   V +     G +IM   N++
Sbjct: 437 DIIGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLNIIQANVGD-----GTIIM--NNLL 489

Query: 125 DQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG 184
             L  +   V+   +N+ L     +I   + + + +L L +  AA   D   L  L++ G
Sbjct: 490 QHLKEMNDPVM---TNVLL-----EIENMLARGKMDLPLNLCFAAIREDDLLLHQLLKRG 541

Query: 185 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 244
            DPN++D +GR+PLH+A S+G  +  L L++   D N +D  G+ PL EA+  GH+ V  
Sbjct: 542 LDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCRDAEGSVPLWEAMVEGHEKVVK 601

Query: 245 LLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 304
           +L++ G++++  D G F CTA  +G+   LK ++ +G D +       + LH A  E   
Sbjct: 602 VLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTRPRATGTSALHTAVCEENI 661

Query: 305 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
            M K LLE GA V  +D  G TP D     G++++  L  +
Sbjct: 662 EMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFRE 702

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%)

Query: 137 KESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRS 196
           ++ N  +  +  +I   + +   +L + +  A   GD + L  L++ G DPN++D DG +
Sbjct: 542 QKENSVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHT 601

Query: 197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 256
            LH+A S+G E     L++ G D N +D  G  PL EA+   H  V  LLV+ GA L+  
Sbjct: 602 ALHIAASKGNEQCVRLLLEYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSG 661

Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D G + C AV   D++ L  ++  G D +    D  T LH A  +G   MA+LLLE GA 
Sbjct: 662 DTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGAD 721

Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKM 365
           +  +D  G TP       G+ ++  L    +    S  H+       ++
Sbjct: 722 IDKQDGNGWTPRALAEQQGHDDIQLLFRSRKAATASGHHHVPSSTTTRV 770

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%)

Query: 137 KESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRS 196
           ++ N  +  +  +I   + +   +L + +  A   GD + L  L++ G DPN++D DG +
Sbjct: 542 QKENSVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHT 601

Query: 197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 256
            LH+A S+G E     L++ G D N +D  G  PL EA+   H  V  LLV+ GA L+  
Sbjct: 602 ALHIAASKGNEQCVRLLLEYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSG 661

Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D G + C AV   D++ L  ++  G D +    D  T LH A  +G   MA+LLLE GA 
Sbjct: 662 DTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGAD 721

Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKM 365
           +  +D  G TP       G+ ++  L    +    S  H+       ++
Sbjct: 722 IDKQDGNGWTPRALAEQQGHDDIQLLFRSRKAATASGHHHVPSSTTTRV 770

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SCX5|AKT5_ARATH Probable potassium channel AKT5 OS=Arabidopsis thaliana GN=AKT5 PE=2 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 104/184 (56%)

Query: 143 LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAT 202
           +K + ++    + + + +L L +  AA  GD   L  L++ G++PN+TD +GR+ LH+A 
Sbjct: 524 MKGILAETELMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAA 583

Query: 203 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 262
           S+G +   + L++ G D NI+D  G+ PL EAI   H+    LL + GA+L+ D  G F 
Sbjct: 584 SKGSQYCVVLLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFS 643

Query: 263 CTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322
           C AV + + + LK ++  G D S  D +  T LH A SEG   + + LLE GA +   D 
Sbjct: 644 CLAVGQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDV 703

Query: 323 WGNT 326
           +G T
Sbjct: 704 YGWT 707

Probable potassium channel. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXE6|AKT6_ARATH Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 105/203 (51%)

Query: 143 LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAT 202
           +K + +D    + + + +L L +  AA  GD   L  L+R G+ PN+ D DGR+ LH+A 
Sbjct: 526 MKGVLADTEHMLAQGKMDLPLSLCFAAARGDDLLLHQLLRRGSSPNEMDKDGRTALHIAA 585

Query: 203 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 262
           S+G     + L++ G D NI+D  GN PL EAI   H  +  LL + GA L++D    F 
Sbjct: 586 SKGSHYCVVLLLEHGADPNIRDSEGNVPLWEAIIGRHREIAKLLAENGAKLSLDSVSYFS 645

Query: 263 CTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322
             AV +   D LK ++  G D +  D +  T LH A SEG   + K LL+ GA +   D 
Sbjct: 646 GLAVEKNCLDALKDIIKYGGDVTLPDGNGTTALHRAVSEGHLEIVKFLLDQGADLDWPDS 705

Query: 323 WGNTPLDEGRMCGNKNLIKLLED 345
           +G TP       GN+ +  L  +
Sbjct: 706 YGWTPRGLADHQGNEEIKTLFHN 728

Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane. Plays an important role in pollen tube development. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
224079588	821	predicted protein [Populus trichocarpa]	0.683	0.367	0.798	1e-142
224065090	841	predicted protein [Populus trichocarpa]	0.687	0.361	0.793	1e-141
147777957	559	hypothetical protein VITISV_022830 [Viti	0.692	0.547	0.784	1e-141
225451365	794	PREDICTED: potassium channel SKOR [Vitis	0.692	0.385	0.781	1e-140
255585584	445	Potassium channel SKOR, putative [Ricinu	0.692	0.687	0.774	1e-138
356499077	849	PREDICTED: potassium channel SKOR-like [	0.719	0.374	0.736	1e-138
356552003	850	PREDICTED: potassium channel SKOR-like [	0.719	0.374	0.733	1e-138
27651624	795	shaker-like potassium channel [Vitis vin	0.692	0.384	0.742	1e-133
56744193	827	potassium channel TORK1 [Nicotiana tabac	0.692	0.370	0.712	1e-129
449445216	828	PREDICTED: potassium channel SKOR-like [	0.723	0.386	0.686	1e-128

>gi|224079588|ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/302 (79%), Positives = 267/302 (88%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKESNL+ KQL+SDITFHIGK EAELALRVNS AYHGDLYQLKGLIRAGADPN+TDYDGR
Sbjct: 520 GKESNLQYKQLESDITFHIGKQEAELALRVNSTAYHGDLYQLKGLIRAGADPNRTDYDGR 579

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA SRGYED TLFLIQ+GVDINIKDKFGNTPLLEAIK GHD V SLL ++GA LN+
Sbjct: 580 SPLHLAASRGYEDTTLFLIQEGVDINIKDKFGNTPLLEAIKNGHDRVASLLSEQGAILNI 639

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           DDAGS LC AVARGDSDFLKRVLSNG+DP+S+DYDHRTPLHVAASEGLYLMAKLL+EAGA
Sbjct: 640 DDAGSVLCRAVARGDSDFLKRVLSNGIDPNSKDYDHRTPLHVAASEGLYLMAKLLIEAGA 699

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
           SVF+KDRWGNTPL EGR+CGNKNLIKLLE+A+ +Q  EFHY S    +KM P+KCT+FPF
Sbjct: 700 SVFSKDRWGNTPLVEGRICGNKNLIKLLEEAKSSQKLEFHYASHETTEKMLPKKCTIFPF 759

Query: 376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
           HPW  K  RR G+VLW+PH +EEL+K A +KL  PDG  ILSED GKIL+VDMI+DGQKL
Sbjct: 760 HPWGAKEQRRPGVVLWIPHTMEELVKAASEKLQLPDGSCILSEDAGKILEVDMIDDGQKL 819

Query: 436 YL 437
           YL
Sbjct: 820 YL 821

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065090|ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/305 (79%), Positives = 271/305 (88%), Gaps = 1/305 (0%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKESNLR KQL+SDITFHIGK EAELALRVNSAAYHGDLYQLKG IRAGADPN+TDYDGR
Sbjct: 532 GKESNLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGFIRAGADPNRTDYDGR 591

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA SRGYEDITLFLIQ+GVDINIKDKFGNTPLLEAIK GHD V SLL K+GA LN+
Sbjct: 592 SPLHLAASRGYEDITLFLIQEGVDINIKDKFGNTPLLEAIKNGHDRVESLLFKQGAILNI 651

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           DDAGS LC AVARGDSDFLKR+LSNG+DP+S+DYDHRTPLHVAASEGLYLMAKLL+EAGA
Sbjct: 652 DDAGSVLCRAVARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYLMAKLLIEAGA 711

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
           SVF+KDRWGNTPLDEGRMCGNK LIKLLE+A+ +Q  EFHY +    +K+ P+KCT+FPF
Sbjct: 712 SVFSKDRWGNTPLDEGRMCGNKKLIKLLEEAKSSQKLEFHYSTHETTEKVLPKKCTIFPF 771

Query: 376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
           HPW E+  RR G+VLWVP+ +EEL+K A ++L FPDG  ILSED GKILDV+MI+ GQKL
Sbjct: 772 HPWAEE-QRRPGVVLWVPNTMEELVKAASEQLQFPDGSCILSEDAGKILDVNMIDGGQKL 830

Query: 436 YLISE 440
           YL S+
Sbjct: 831 YLTSD 835

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777957|emb|CAN64951.1| hypothetical protein VITISV_022830 [Vitis vinifera]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/306 (78%), Positives = 266/306 (86%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKESNLR+KQL+SDITFHIG+ EAELALRVNSA+YHGDLYQLK LIRAGADPNKTDYDGR
Sbjct: 251 GKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGR 310

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA++RG+EDI  FLIQ+GVD+NI D FGNTPLLEAIK  HD V SLLV +GA L +
Sbjct: 311 SPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKI 370

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           DDAG FLC  +ARGDSDFLKR+LSNG+DP+S+DYDHRTPLHVAASEGLY MAKLLLEAGA
Sbjct: 371 DDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEAGA 430

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
           SVF+KDRWGNTPLDEG  CGNKNL+KLLEDA+  QLSEF  CS+ + DKMHPRKCTVFPF
Sbjct: 431 SVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFPF 490

Query: 376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
           HPWD K H+R GI+LWVP  IEELIK A + L F     ILSEDGGKILDVDMI+DGQKL
Sbjct: 491 HPWDPKEHKRPGIMLWVPQTIEELIKTATEGLQFSSESCILSEDGGKILDVDMISDGQKL 550

Query: 436 YLISET 441
           YL+ ET
Sbjct: 551 YLLCET 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451365|ref|XP_002262949.1| PREDICTED: potassium channel SKOR [Vitis vinifera] gi|296087079|emb|CBI33453.3| unnamed protein product [Vitis vinifera]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/306 (78%), Positives = 265/306 (86%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKESNLR+KQL+SDITFHIG+ EAELALRVNSA+YHGDLYQLK LIRAGADPNKTDYDGR
Sbjct: 486 GKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGR 545

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA++RG+EDI  FLIQ+GVD+NI D FGNTPLLEAIK  HD V SLLV +GA L +
Sbjct: 546 SPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKI 605

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           DDAG FLC  +ARGDSDFLKR+LSNG+DP+S+DYDHRTPLHVAASEGLY MAKLLLEA A
Sbjct: 606 DDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEARA 665

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
           SVF+KDRWGNTPLDEG  CGNKNL+KLLEDA+  QLSEF  CS+ + DKMHPRKCTVFPF
Sbjct: 666 SVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFPF 725

Query: 376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
           HPWD K H+R GI+LWVP  IEELIK A + L F     ILSEDGGKILDVDMI+DGQKL
Sbjct: 726 HPWDPKEHKRPGIMLWVPQTIEELIKTATEGLQFSSESCILSEDGGKILDVDMISDGQKL 785

Query: 436 YLISET 441
           YL+ ET
Sbjct: 786 YLLCET 791

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585584|ref|XP_002533481.1| Potassium channel SKOR, putative [Ricinus communis] gi|223526674|gb|EEF28913.1| Potassium channel SKOR, putative [Ricinus communis]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/306 (77%), Positives = 268/306 (87%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKES+LR KQL+SDITFHIGK EAELALRVNSAAYHGDLYQLKG +RAGADPN+TDYDGR
Sbjct: 137 GKESSLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGFVRAGADPNRTDYDGR 196

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA SRGYEDI  FLIQ+GVDINIKDKFGNTPLLEAIK GHD V SLLVKEGA L +
Sbjct: 197 SPLHLAASRGYEDIACFLIQEGVDINIKDKFGNTPLLEAIKSGHDHVASLLVKEGAELRM 256

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           DDAGSFLC+ V +GDSD L+R+LSNG++P+S+DYDHRTPLHVAASEGLY+MAKLLLEAGA
Sbjct: 257 DDAGSFLCSTVLKGDSDLLRRILSNGINPNSKDYDHRTPLHVAASEGLYMMAKLLLEAGA 316

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
           SV +KDRWG TPLDEGR+ GNKNLIKLLEDA+ TQLSEF   +Q + DK+  RKCT+FPF
Sbjct: 317 SVCSKDRWGKTPLDEGRISGNKNLIKLLEDAKSTQLSEFLPHTQELTDKIQRRKCTIFPF 376

Query: 376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
           HPWD K  +R GIVLWVP  +EELIK A ++L+ PD   +LS+DGGKILDVDM++DGQ L
Sbjct: 377 HPWDPKEQKRPGIVLWVPQTMEELIKAAAEQLNLPDDSFMLSKDGGKILDVDMVDDGQML 436

Query: 436 YLISET 441
           YLISET
Sbjct: 437 YLISET 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499077|ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/326 (73%), Positives = 278/326 (85%), Gaps = 8/326 (2%)

Query: 122 NVVDQLYFVCHGVL-----GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQ 176
           N++D  ++    VL     GKES  R KQL+SDITFH+GK EAELAL+VNSAA++GD+YQ
Sbjct: 527 NILDIYFYDGRKVLYNLLEGKES-FRDKQLESDITFHLGKQEAELALKVNSAAFNGDMYQ 585

Query: 177 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 236
           LKGLIRAGADPNK DYDGRSPLHLA SRGYEDIT+FLIQ+ VD+NI D FGNTPLLEA+K
Sbjct: 586 LKGLIRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQERVDVNIIDNFGNTPLLEAVK 645

Query: 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 296
            GHD V SLLVKEGAS+ +++AGSFLCTAVARGDSD+LKR+LSNG+DP+ +DYD+R+PLH
Sbjct: 646 NGHDRVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLH 705

Query: 297 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHY 356
           VAA+EGLY MAKLLLEAGASVFT+DRWGNTPLDE RMCGNKNLIKLLEDA+ +QLSEF  
Sbjct: 706 VAAAEGLYFMAKLLLEAGASVFTRDRWGNTPLDEARMCGNKNLIKLLEDAKSSQLSEF-- 763

Query: 357 CSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSIL 416
            SQ   DKMHP+KCTVFPFHPWD K +RRHGIVLW+PH+IEELIK A ++++   G  IL
Sbjct: 764 PSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWIPHSIEELIKSAAEQIEISGGSCIL 823

Query: 417 SEDGGKILDVDMINDGQKLYLISETQ 442
           SED GKI DVDMI DGQKLYL+ ET 
Sbjct: 824 SEDAGKITDVDMIKDGQKLYLVHETH 849

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552003|ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/326 (73%), Positives = 278/326 (85%), Gaps = 8/326 (2%)

Query: 122 NVVDQLYFVCHGVL-----GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQ 176
           N++D  ++    VL     GKES  R KQL+SDITFHIGK EAELAL+VN+AA++GDLYQ
Sbjct: 528 NILDIYFYDGRKVLNNLLEGKES-FRDKQLESDITFHIGKQEAELALKVNNAAFNGDLYQ 586

Query: 177 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 236
           LKGLIRAGADPNKTDYDGRSPLHLA SRGYEDITLFLIQ+ VD+NIKD FGNTPLLEA+K
Sbjct: 587 LKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQERVDVNIKDNFGNTPLLEAVK 646

Query: 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 296
            GHD V SLLV+EGAS+ +++AGSFLCTAVARGDSD+LKR+LSNG+DP+ +DYD+R+PLH
Sbjct: 647 NGHDRVASLLVREGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLH 706

Query: 297 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHY 356
           +AA+EGLY MAKLLLE GASVFTKDRWGNTPLDE RMCGNKNLIKLLEDA+  QLSEF  
Sbjct: 707 IAAAEGLYFMAKLLLEGGASVFTKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLSEFP- 765

Query: 357 CSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSIL 416
            SQ   DKMHP+KCTVFP+HPWD K +RRHGIVLW+PH+I+ELIK A ++++F     IL
Sbjct: 766 -SQEYTDKMHPKKCTVFPYHPWDPKDNRRHGIVLWIPHSIQELIKSAAEQIEFSGDACIL 824

Query: 417 SEDGGKILDVDMINDGQKLYLISETQ 442
           SED GK+ DVDMI DGQKLYL+ ET 
Sbjct: 825 SEDAGKVTDVDMIKDGQKLYLVHETH 850

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27651624|emb|CAD35400.1| shaker-like potassium channel [Vitis vinifera]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/307 (74%), Positives = 259/307 (84%), Gaps = 1/307 (0%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GKESNLR+KQL+SDITFHIG+ EAELALRVNSA+YHGDLYQLK LIRAGADPNKTDYDGR
Sbjct: 486 GKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGR 545

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA++RG+EDI  FLIQ+GVD+NI D FGNTPLLEAIK  HD V SLLV +GA L +
Sbjct: 546 SPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKI 605

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL-EAG 314
           DDAG FLC  +ARGDSDFLKR+LSNG+DP+S+DYDH+TP+HVAAS  +    K+   +AG
Sbjct: 606 DDAGGFLCCTIARGDSDFLKRILSNGIDPNSKDYDHKTPIHVAASGRVIFYGKVAFRKAG 665

Query: 315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFP 374
           ASVF+KDRWGNTPLDEG  CGNKNL+KLLEDA+  QLSEF  CS+ + DKMHPRKCTVFP
Sbjct: 666 ASVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFP 725

Query: 375 FHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQK 434
           FHPWD K H+R GI+LWVP  IEELIK A + L F     ILSEDGGKILDVDMI+DGQK
Sbjct: 726 FHPWDPKEHKRPGIMLWVPQTIEELIKTATEGLQFSSESCILSEDGGKILDVDMISDGQK 785

Query: 435 LYLISET 441
           LYL+ ET
Sbjct: 786 LYLLCET 792

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56744193|dbj|BAD81036.1| potassium channel TORK1 [Nicotiana tabacum]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/306 (71%), Positives = 260/306 (84%)

Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GK+S+LR+KQ++SDITFHIGK EAELAL+VNSAAYHGDL+QLKGLIRAGADPNK DYDGR
Sbjct: 521 GKDSDLRVKQVESDITFHIGKQEAELALKVNSAAYHGDLHQLKGLIRAGADPNKKDYDGR 580

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           SPLHLA SRGYEDI+LFLIQ+GVD+N  D F  TPL EAIK GHD V SLLVKEGA L +
Sbjct: 581 SPLHLAASRGYEDISLFLIQEGVDLNASDNFDTTPLFEAIKNGHDRVASLLVKEGAFLKI 640

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           ++AGSFLC  VA+GDSD L+R+LSNG+DP+S+DYDHRTPLHVAAS+GL+ MA+LLL AGA
Sbjct: 641 ENAGSFLCMLVAKGDSDLLRRLLSNGIDPNSKDYDHRTPLHVAASQGLFAMARLLLGAGA 700

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
           SVF+KDRWGNTP DE R+ GN  L KLLE+A+  Q+SEF      + +KMHP+KCTVFPF
Sbjct: 701 SVFSKDRWGNTPFDEARLSGNNQLAKLLEEAKSAQISEFPIAPHEISEKMHPQKCTVFPF 760

Query: 376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
           HPW+ K  R+HG+VLW+P ++EELI  A ++L+FP G  ILSED GKILD+ +I+DGQKL
Sbjct: 761 HPWEPKDLRKHGVVLWIPKSMEELITTASEQLNFPSGSCILSEDAGKILDIGLISDGQKL 820

Query: 436 YLISET 441
           YLISET
Sbjct: 821 YLISET 826

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445216|ref|XP_004140369.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/325 (68%), Positives = 270/325 (83%), Gaps = 5/325 (1%)

Query: 122 NVVDQLYFVCHGVL-----GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQ 176
           N++D  ++    +L     GKE+NLR+KQL+SDITFHIGK EAELAL+VNSAAYHGDLYQ
Sbjct: 503 NILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQ 562

Query: 177 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 236
           LKGL+RAGADPNKTDYDGRSPLHLA SRG+EDI +FLIQ+GV+I++KD FGNTPL+EAIK
Sbjct: 563 LKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLMEAIK 622

Query: 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 296
            G+D V  LL KEGASL VD+ GSFLCTAV+RGDSD +KR+L  G+DP+S+DYD RTPLH
Sbjct: 623 NGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGIDPNSKDYDSRTPLH 682

Query: 297 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHY 356
           +A SEGL LMAKLLLE+GASVF+KDRWGNTPLDEGR+CGNKN++KLLE+A+ +QLSE  Y
Sbjct: 683 IAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEAKASQLSESPY 742

Query: 357 CSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSIL 416
            S+   DK   +KCTVFPFHPWD + ++R GI+LWVP  IEELIK + ++L       IL
Sbjct: 743 SSREFTDKKPTKKCTVFPFHPWDPEENKRPGIMLWVPLTIEELIKESSEQLQVSGECCIL 802

Query: 417 SEDGGKILDVDMINDGQKLYLISET 441
           SEDGGKILDV MI++ QKLYL+ +T
Sbjct: 803 SEDGGKILDVHMIDESQKLYLVPDT 827

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.692	0.369	0.696	1.1e-144
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.690	0.371	0.667	1.5e-140
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.595	0.306	0.305	4.7e-37
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.416	0.209	0.358	4.8e-35
TAIR|locus:2132065	802	KT2/3 "potassium transport 2/3	0.518	0.285	0.304	3.8e-27
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.416	0.814	0.354	5.7e-20
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.402	0.787	0.362	7.3e-19
ZFIN|ZDB-GENE-041210-88	280	asb13a.2 "ankyrin repeat and S	0.402	0.635	0.335	1.6e-18
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.404	0.167	0.318	1.9e-18
RGD|620350	231	Psmd10 "proteasome (prosome, m	0.402	0.770	0.356	2e-18

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 1.1e-144, Sum P(2) = 1.1e-144
 Identities = 213/306 (69%), Positives = 258/306 (84%)

Query:   136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
             GKESN+R+KQL+SDITFHI K EAELAL++NSAA++GDLYQLK LIRAG DPNKTDYDGR
Sbjct:   523 GKESNVRIKQLESDITFHISKQEAELALKLNSAAFYGDLYQLKSLIRAGGDPNKTDYDGR 582

Query:   196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
             SPLHLA SRGYEDITL+LIQ+ VD+NIKDK G+TPLLEAIK G+D V +LLVKEGA+LN+
Sbjct:   583 SPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGNDRVAALLVKEGATLNI 642

Query:   256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
             ++AG+FLCT VA+GDSDFLKR+LSNG+DP+S+DYDHRTPLHVAASEG Y++A  L+EA A
Sbjct:   643 ENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYDHRTPLHVAASEGFYVLAIQLVEASA 702

Query:   316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF 375
             +V  KDRWGNTPLDE   CGNK LIKLLEDA+ +Q+S F   S+   DK++ +KCTV+  
Sbjct:   703 NVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKNSQISSFPSGSKEPKDKVYKKKCTVYFS 762

Query:   376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKL 435
             HP D K  RR GIVLWVP +IEELI+ A ++L+ P+   +LSED  KI+DVD+I+DGQKL
Sbjct:   763 HPGDSKEKRRRGIVLWVPRSIEELIRTAKEQLNVPEASCVLSEDEAKIIDVDLISDGQKL 822

Query:   436 YLISET 441
             YL  ET
Sbjct:   823 YLAVET 828

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 1093 (389.8 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
 Identities = 207/310 (66%), Positives = 256/310 (82%)

Query:   137 KESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRS 196
             KESN R+K+L+SDI  HIGK EAELAL+VNSAA+ GD YQLK LIR+GADPNKTDYDGRS
Sbjct:   507 KESNDRIKKLESDIVIHIGKQEAELALKVNSAAFQGDFYQLKSLIRSGADPNKTDYDGRS 566

Query:   197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 256
             PLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+TPL EA+K G +GV  LLVKEGAS N++
Sbjct:   567 PLHLAACRGYEDITLFLIQEGVDVNLKDKFGHTPLFEAVKAGQEGVIGLLVKEGASFNLE 626

Query:   257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
             D+G+FLCT VA+GDSDFLKR+LS+G++P+S DYDHRTPLHVAASEGL+LMAK+L+EAGAS
Sbjct:   627 DSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDYDHRTPLHVAASEGLFLMAKMLVEAGAS 686

Query:   317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMID-KMHPRKCTVFPF 375
             V +KDRWGN+PLDE R+CGNK LIKLLED +  Q S +    + + + ++  RKCTVFPF
Sbjct:   687 VISKDRWGNSPLDEARLCGNKKLIKLLEDVKNAQSSIYPSSLRELQEERIERRKCTVFPF 746

Query:   376 HPWDEKVHR--RHGIVLWVPHNIEELIKLAVDKLDFPDGHS--ILSEDGGKILDVDMIND 431
             HP + K  R  +HG+V+W+P N+E+LI  A  +L   DG S  +LSED G+I D+DMI+D
Sbjct:   747 HPQEAKEERSRKHGVVVWIPSNLEKLIVTAAKELGLSDGASFVLLSEDQGRITDIDMISD 806

Query:   432 GQKLYLISET 441
             G KLY+IS+T
Sbjct:   807 GHKLYMISDT 816

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
 Identities = 85/278 (30%), Positives = 140/278 (50%)

Query:    71 DVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFV 130
             D+I +I    Y P +  V   + C        ++R++   FL   +I  Q NV D    +
Sbjct:   437 DIIGEIGVLCYRPQLFTVRTKRLCQ-------LLRMNRTTFL--NII--QANVGDGT-II 484

Query:   131 CHGVLG--KESNLR-LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADP 187
              + +L   KE N   +  +  +I   + + + +L L +  AA   D   L  L++ G DP
Sbjct:   485 MNNLLQHLKEMNDPVMTNVLLEIENMLARGKMDLPLNLCFAAIREDDLLLHQLLKRGLDP 544

Query:   188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
             N++D +GR+PLH+A S+G  +  L L++   D N +D  G+ PL EA+  GH+ V  +L+
Sbjct:   545 NESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCRDAEGSVPLWEAMVEGHEKVVKVLL 604

Query:   248 KEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA 307
             + G++++  D G F CTA  +G+   LK ++ +G D +       + LH A  E    M 
Sbjct:   605 EHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTRPRATGTSALHTAVCEENIEMV 664

Query:   308 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
             K LLE GA V  +D  G TP D     G++++  L  +
Sbjct:   665 KYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFRE 702

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
 Identities = 66/184 (35%), Positives = 104/184 (56%)

Query:   143 LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAT 202
             +K + ++    + + + +L L +  AA  GD   L  L++ G++PN+TD +GR+ LH+A 
Sbjct:   524 MKGILAETELMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAA 583

Query:   203 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 262
             S+G +   + L++ G D NI+D  G+ PL EAI   H+    LL + GA+L+ D  G F 
Sbjct:   584 SKGSQYCVVLLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFS 643

Query:   263 CTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322
             C AV + + + LK ++  G D S  D +  T LH A SEG   + + LLE GA +   D 
Sbjct:   644 CLAVGQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDV 703

Query:   323 WGNT 326
             +G T
Sbjct:   704 YGWT 707

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
 Identities = 71/233 (30%), Positives = 113/233 (48%)

Query:   103 VIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITF-HIGKHEAEL 161
             ++R+   F +    I +Q N      F+ H    K SNL +  LK+     +       +
Sbjct:   484 LLRLKTSFLIETMQIKQQDNATMLKNFLQHHK--KLSNLDIGDLKAQQNGENTDVVPPNI 541

Query:   162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
             A  + +    G+   L  L++A   P+ TD  G++PLH+A SRGYED  L L++ G +I+
Sbjct:   542 ASNLIAVVTTGNAALLDELLKAKLSPDITDSKGKTPLHVAASRGYEDCVLVLLKHGCNIH 601

Query:   222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 281
             I+D  GN+ L EAI   H  +  +L    A  +   AG  LC A  + + + +K +L  G
Sbjct:   602 IRDVNGNSALWEAIISKHYEIFRILYHFAAISDPHIAGDLLCEAAKQNNVEVMKALLKQG 661

Query:   282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEGRM 333
             ++  + D+   T L VA +E    M  LL   GA V   +     TPL++ R+
Sbjct:   662 LNVDTEDHHGVTALQVAMAEDQMDMVNLLATNGADVVCVNTHNEFTPLEKLRV 714

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 68/192 (35%), Positives = 104/192 (54%)

Query:   158 EAELA-LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQ 215
             EA ++ + V + AY G   +LK  + +      KTD D R+ LH A S G+ +I  FL+ 
Sbjct:     2 EARVSNVEVCNLAYGGKFEELKKCVLSDNSLAAKTDQDSRTALHWACSAGHVNIAQFLLD 61

Query:   216 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCTAVARGDSDF 273
              GV++++KD    TPL  A   G + +   L+ +GA LN V+  G   L  A ++   + 
Sbjct:    62 LGVEVDLKDDACWTPLHIAASAGREEIVRSLISKGAQLNSVNQNGCTPLHYAASKNLYEI 121

Query:   274 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----D 329
              + +L NG DP++ D    TPLH A+++G Y + +LLL+  AS   +D  GNTPL    D
Sbjct:   122 AQILLENGADPNATDKLQSTPLHRASAKGNYRLIQLLLKESASTNIQDSEGNTPLHLACD 181

Query:   330 EGRMCGNKNLIK 341
             E R    K L++
Sbjct:   182 EERAEAAKLLVE 193

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 67/185 (36%), Positives = 96/185 (51%)

Query:   163 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
             L V + AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N
Sbjct:     8 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query:   222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCTAVARGDSDFLKRVLS 279
              KD  G +PL  A   G D +   L+ +GA +N V+  G   L  A ++   +    +L 
Sbjct:    68 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query:   280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCG 335
              G +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+  
Sbjct:   128 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 187

Query:   336 NKNLI 340
              K L+
Sbjct:   188 AKLLV 192

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

ZFIN|ZDB-GENE-041210-88 asb13a.2 "ankyrin repeat and SOCS box-containing 13a, tandem duplicate 2" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 61/182 (33%), Positives = 89/182 (48%)

Query:   165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
             V+ AAY G++  L+ LI +GA  N    D  +PLH A +RG       L+  G  ++ ++
Sbjct:    23 VHKAAYEGEVSVLQDLISSGASVNIVAVDSITPLHEAAARGQTQCVRLLLDAGAQVDARN 82

Query:   225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLN---VDDAGSFLCTAVARGDSDFLKRVLSNG 281
               G+TPL EA   G+     LL+  GA +N        S L  A   G++D ++ V++ G
Sbjct:    83 VDGSTPLCEACSIGNFECVRLLLDYGAKVNPTLTSRTTSPLHEACMGGNADCVRLVIAKG 142

Query:   282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 341
                 + D  H TPLHVA +       K+LL AG  V    R   TPL       N N+I+
Sbjct:   143 ASLEAYDLYHGTPLHVACANRRLECVKVLLNAGVHV-NATRLHETPLHHAARTNNVNMIE 201

Query:   342 LL 343
             +L
Sbjct:   202 ML 203

GO:0035556 "intracellular signal transduction" evidence=IEA

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 58/182 (31%), Positives = 102/182 (56%)

Query:   165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
             ++ AAY G L  +K L+  G+D +  D  G +PLH A + G+ D+  +L++ G +I+  +
Sbjct:   177 IHWAAYLGHLEVVKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPN 236

Query:   225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL---CTAVARGDSDFLKRVLSNG 281
              FGNT L  A   G + V + LV  GA++N  +   +      AV+   +  L+ +++NG
Sbjct:   237 AFGNTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNG 296

Query:   282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 341
              D + +  + ++PLH+AA  G +  +++L++ G  +   DR+GNTPL      G++ LI 
Sbjct:   297 ADVNMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPLHVAAKYGHELLIS 356

Query:   342 LL 343
              L
Sbjct:   357 TL 358

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|620350 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 2.0e-18, P = 2.0e-18
 Identities = 66/185 (35%), Positives = 98/185 (52%)

Query:   163 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
             L V + AY+G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N
Sbjct:     8 LMVCNLAYNGKLDELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query:   222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLS 279
              KD  G +PL  A   G D +   L+ +GA +N V+  G + L  A ++   +    +L 
Sbjct:    68 EKDDAGWSPLHIAASAGRDEIVKALLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLE 127

Query:   280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCG 335
              G +P ++++   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+  
Sbjct:   128 GGANPDAKNHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187

Query:   336 NKNLI 340
              K L+
Sbjct:   188 AKLLV 192

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO;ISS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO;ISS

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-36
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-27
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-19
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-14
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-12
pfam11834	69	pfam11834, DUF3354, Domain of unknown function (DU	3e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-11
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-09
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	6e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-08
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-07
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	7e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-06
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-04
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	0.002
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.003

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  140 bits (355), Expect = 5e-36
 Identities = 120/466 (25%), Positives = 193/466 (41%), Gaps = 91/466 (19%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           L+  LP  +   I Q L++P +EKV LFKG S E +  +V ++  E+  P E ++ Q   
Sbjct: 355 LIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEA 414

Query: 124 VDQLYFVCHG----------------------VLGKESN------------------LRL 143
            D +Y V  G                      + G+                     LRL
Sbjct: 415 PDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRL 474

Query: 144 KQ-----------------LKSDITFHIGKHEAELA-LRVNSAAYHGDLYQLKGLIRAGA 185
           K                  LK+ +  H   H+  +  L  ++   H D      L+   +
Sbjct: 475 KTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVAS 534

Query: 186 DPN----------KTDYD-----GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 230
             N          K D D     GR+PLH+A S+GYED  L L++   +++I+D  GNT 
Sbjct: 535 TGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA 594

Query: 231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD 290
           L  AI   H  +  +L    +  +   AG  LCTA  R D   +K +L  G++  S D+ 
Sbjct: 595 LWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQ 654

Query: 291 HRTPLHVAASEGLYLMAKLLLEAGASVF---TKDRWGNTPLDE---GRMCGNKNLI-KLL 343
             T L VA +E    M +LL+  GA V    T D +  T L E    R  G+   I   +
Sbjct: 655 GATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSV 714

Query: 344 EDAECTQLSEFH-----YCSQGMIDKMHPRKCTVFPFHPW--DEKVHRRHGIVLWVPHNI 396
              E     +              ++  PR  +++  HP   +E+     G ++ +P ++
Sbjct: 715 PADEPDLGRDGGSRPGRLQGTSSDNQCRPR-VSIYKGHPLLRNERCCNEAGKLINLPPSL 773

Query: 397 EELIKLAVDKLDFPDGHS--ILSEDGGKILDVDMINDGQKLYLISE 440
           EEL  +A +KL F D     + +E+G +I  +++I D  KL+++ +
Sbjct: 774 EELKAIAGEKLGF-DARKAMVTNEEGAEIDSIEVIRDNDKLFVVED 818

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  119 bits (301), Expect = 1e-32
 Identities = 56/156 (35%), Positives = 76/156 (48%), Gaps = 31/156 (19%)

Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
           N  D DGR+PLHLA S G+ ++   L++ G D+N KD  G TPL  A K GH        
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-------- 52

Query: 248 KEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA 307
                                   + +K +L  G D ++RD D  TPLH+AA  G   + 
Sbjct: 53  -----------------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89

Query: 308 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           KLLL+ GA V  +D+ G TPL      G+  ++KLL
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (262), Expect = 5e-27
 Identities = 57/144 (39%), Positives = 73/144 (50%), Gaps = 31/144 (21%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +G L  +K L+  GAD N  D DGR+PLHLA   G+ +I   L++KG D+N +DK G
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           NTPL  A + G+  V  LL+K GA +N                                R
Sbjct: 74  NTPLHLAARNGNLDVVKLLLKHGADVNA-------------------------------R 102

Query: 288 DYDHRTPLHVAASEGLYLMAKLLL 311
           D D RTPLH+AA  G   + KLLL
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 81.5 bits (202), Expect = 3e-19
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +G+L  +K L+  GAD N  D D  + LHLA   G  +I   L++ G D+N KDK G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           NT L  A + G+  +  LL++ GA +N+ D
Sbjct: 62  NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 84.9 bits (209), Expect = 7e-19
 Identities = 57/182 (31%), Positives = 75/182 (41%), Gaps = 23/182 (12%)

Query: 166 NSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
            +      L +L   +         D DGR PLH A S+G + I   L+  G D+N KD 
Sbjct: 45  LALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA 104

Query: 226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 285
            G+TPL  A   G+                 +    L  A A  D + L           
Sbjct: 105 DGDTPLHLAALNGNP-----------PEGNIEVAKLLLEAGADLDVNNL----------- 142

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
            RD D  TPLH AA  G   + +LLLEAGA   +++ +G T LD     G   L+KLL D
Sbjct: 143 -RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Query: 346 AE 347
             
Sbjct: 202 KG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD 290
           L  A K G+  +  LL+++GA +N+ D  + L  A   G+ + +K +L +G D +++D D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 291 HRTPLHVAASEGLYLMAKLLLEAGASVFTKD 321
             T LH+AA  G   + KLLLE GA +  KD
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 24/184 (13%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGY-EDITLFLIQKGVDINIKDKFGNTPL---LEAI 235
           L+ AGAD N  +  G +PLHL        D+   LI+ G D+N KDK G TPL   L + 
Sbjct: 69  LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL-SG 127

Query: 236 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA------RGDSDFLKRVLSNGVDPSSRDY 289
              +  V  LL+++GA +N  D   +  T +A        + + L+ ++  G D  + D 
Sbjct: 128 FNINPKVIRLLLRKGADVNALDL--YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDD 185

Query: 290 DHRTPLHVAASEGLYLMA-----KLLLEAGASVFTKDRWGNTPLDEGRM---CGNKNLIK 341
             R+ LH                + L+ AG      D  GNTPL        C    ++ 
Sbjct: 186 RFRSLLHHHL---QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP 242

Query: 342 LLED 345
           LL  
Sbjct: 243 LLIA 246

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 76.2 bits (188), Expect = 6e-15
 Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 41/208 (19%)

Query: 146 LKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 205
            + +    I   EA L       A +  + +++ L+ AGAD N     G++PLHL     
Sbjct: 2   EEDESVDII--MEAAL-YDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYS 58

Query: 206 ---YEDITLFLIQKGVDINIKDKFGNTPL---------LEAIKCGHDGVTSLLVKEGASL 253
               +DI   L++ G D+N  ++ G TPL         L+ IK        LL+K GA +
Sbjct: 59  SEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIK--------LLIKAGADV 110

Query: 254 NVDDAGSF----LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL---- 305
           N  D        +  +    +   ++ +L  G D ++ D    TPL V       L    
Sbjct: 111 NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV------LLKSRN 164

Query: 306 ----MAKLLLEAGASVFTKDRWGNTPLD 329
               + +LL++AGA V+  D    + L 
Sbjct: 165 ANVELLRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 262 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 321
           L  A   G+ + +K +L  G D +  D D  T LH+AA  G   + KLLLE GA V  KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 322 RWGNTPLDEGRMCGNKNLIKLL 343
           + GNT L      GN  ++KLL
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 262 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 321
           LC   A GD+   + +L+ G DP+ RDYD RTPLH+A + G   + ++LLE GA     D
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 322 RWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCS 358
           + G TPL+     G + +++LL         E    +
Sbjct: 146 KDGKTPLELAEENGFREVVQLLS-RHSQCHFELGANA 181

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 177 LKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 235
            K L+  GAD N  D   G + LH AT    + +T  L+  G ++NI DK  N+PL  A+
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 236 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR-GDSDFLKRVLSNGVDPSSRDY-DH 291
           K  +  +  +L++ GAS +  D    + L  +V    D D LK +L +GVD +++ Y   
Sbjct: 210 KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269

Query: 292 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351
            T LH +      L  KLLLE GA + + + +  TPL         + +K        ++
Sbjct: 270 LTALHSSIKSERKL--KLLLEYGADINSLNSYKLTPL--------SSAVKQYLCINIGRI 319

Query: 352 SEFHYCSQGMIDK 364
              + C    I  
Sbjct: 320 LISNICLLKRIKP 332

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 69.2 bits (169), Expect = 9e-13
 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 172 GDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 231
           GD   ++  I+ GAD N  +     PL  A   G  DI   LI  GVD +I         
Sbjct: 46  GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL-------- 97

Query: 232 LEAIKCGHDGVTSLLVKEGASLNVDDAGS--FLCTAVARGDSDFLKRVLSNGVDPSSRDY 289
              I C    +   ++  G  +N+ DA    FL  A+ +GD + +K +   G D +  D 
Sbjct: 98  --PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155

Query: 290 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           +   P+H+A     + + KLLLE GA    KD  G +PL      G+   IKLL D
Sbjct: 156 NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID 211

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 67.7 bits (165), Expect = 3e-12
 Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 5/175 (2%)

Query: 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG 217
           +AEL   ++ A   GDL  +K L   GAD N  D +G  P+H+A    + DI   L++KG
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 218 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLK 275
              N+KD  G +PL  A + G      LL+  G  +       F  L  A+    S    
Sbjct: 181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS--AI 238

Query: 276 RVLSNGVDPSSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRWGNTPLD 329
            +L N    + +D D  TPLH A +    + +  +LL   A +  KD  G  P+D
Sbjct: 239 ELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPID 293

Length = 434

>gnl|CDD|221253 pfam11834, DUF3354, Domain of unknown function (DUF3354)

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 367 PRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDV 426
           P++ T+   HP ++      G ++ +P ++EEL+++A +K  F     +L+EDG +I D+
Sbjct: 1   PKRVTIHRGHPPEKGK--EAGKLILLPGSLEELLEIAGEKFGFAPT-KVLNEDGAEIDDI 57

Query: 427 DMINDGQKLYLI 438
           ++I DG  LYL+
Sbjct: 58  EVIRDGDHLYLV 69

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 60 amino acids in length. Length = 69

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 19/168 (11%)

Query: 180 LIRAGADPNKTDYDGRSPLHLA--TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 237
           L+  GA+ N  D +G +PL  A         I  +L+  G ++NIK+  G   L   ++ 
Sbjct: 92  LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151

Query: 238 GHD--GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPL 295
                 +  LL+ +G  +N  +                +  +LS GV  + +D    TPL
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNR---------------VNYLLSYGVPINIKDVYGFTPL 196

Query: 296 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           H A         K LL+ GA+    +++G+TPL    +  NK + KLL
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 34/86 (39%), Positives = 47/86 (54%)

Query: 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 220
           L + +   A  GD    + L+  GADPN  DYDGR+PLH+A + G+  +   L++ G D 
Sbjct: 82  LTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 221 NIKDKFGNTPLLEAIKCGHDGVTSLL 246
            + DK G TPL  A + G   V  LL
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 33/156 (21%)

Query: 177 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITL--FLIQKGVDINIKDKFGNTPLLEA 234
           ++ L+R GAD N  D  G +PL +       ++ L   LI  G D+   D    + L   
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL--- 191

Query: 235 IKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
               H                      L     +  +  ++ ++  G DP++ D    TP
Sbjct: 192 ----H--------------------HHL--QSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Query: 295 LHVAASEGLYLMAKL--LLEAGASVFTKDRWGNTPL 328
           LH  A+      + +  LL AG S+  ++R+G TPL
Sbjct: 226 LHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL 261

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 60.7 bits (147), Expect = 8e-10
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 2   EFAFFRGLPE-NLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSF 60
           E AF    P+  L I D    + F VDI++ FF+AY D +T  LV    +IA+RYL + F
Sbjct: 82  EVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWF 141

Query: 61  IIDLLSCLPWDVI 73
           ++D+ S +P+  +
Sbjct: 142 LMDVASTIPFQAL 154

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 172 GDLYQLKGLIRAGADPNKTDYDGRSPLHLATS-RGYEDITLFLIQKGVDINIKDKFGNTP 230
           G+L   + L+  G +PN   YDG SP+ LA   R  E I L L++ G   ++K     + 
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKL-LMKHGAIPDVKYPDIESE 71

Query: 231 LLEAIKCGHDGVTSLLVKEGASLN---VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           L +A++ G       L+  G   +     D  + L  A      D +K +++ G DP   
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
           + D  +PLH+A   G     +LL++  A +  +D  G TPL      G+  + K+L D+
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 177 LKGLIRAGADPNKTDYDGRSPLH-LAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 234
           ++ LIRAG DP  TD  G +PLH +AT S     + L L+  G+ IN ++++G TPL  A
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Query: 235 IKCGHDGVTSLLVKEGASLNVDDAGSFLCT--AVARGDSDFLKRVLS 279
               +      L+  GA +N   +         V   +   ++  L+
Sbjct: 265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 57.7 bits (139), Expect = 5e-09
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 177 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 236
           +K LI  GADP+  + D  SPLHLA   G       LI     ++I+D  G TPL+ A+ 
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177

Query: 237 CGHDGVTSLLVKEGASLN-VDDAG--SFLCTAVARGDSDFLKRVLSNGVD 283
            G   +  +L+  GA+++     G  + LC A+     D ++  +  G D
Sbjct: 178 KGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 57.4 bits (138), Expect = 6e-09
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  G  PN+TD DG  PLH+A+      I   L+  G D N  DK   TPL        
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117

Query: 240 DGV--TSLLVKEGASLN--VDDAGSFLCTAVARGDSDFLKRVLSNG-----VDPSSRDYD 290
           + +   +LLV+ GA +N  VD+ G     A         K+++S G     VD   +++ 
Sbjct: 118 EVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHI 177

Query: 291 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 328
           HR   H+ +          +++ G S    D  GNTPL
Sbjct: 178 HR---HLMSDNPKASTISWMMKLGISPSKPDHDGNTPL 212

Length = 446

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 160 ELALRVNSAAYHGDLYQLKGLIRAGA---DPNKTDYDGRSPLHLATSRGYEDITLFLIQK 216
            LA    +    G++   K L+ AGA     N  D DG +PLH A   G  DI   L++ 
Sbjct: 111 HLAALNGNP-PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Query: 217 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 276
           G D N ++ +G T L  A K G   +  LL+ +G  L                       
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL----------------SLLKFNL 213

Query: 277 VLSNGVDPSSRDYDHRTPLHVA 298
                 + S R+  + T L +A
Sbjct: 214 EGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITL-FLIQKGVDINIKDKFGNTPLLEA--IK 236
           L+  GAD N  +  G +PL+L    GY+   +  LI  G D+N  D+   TPL +A  + 
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLD 352

Query: 237 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
              D V +LL + GA++N  D    + +  A  R +   +  +L  G D  +      T 
Sbjct: 353 RNKDIVITLL-ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTA 411

Query: 295 LHVA-ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK---NLIKLLED 345
           LH A      Y+  K L++ GA+V +K++  +TPL     C      ++I++L D
Sbjct: 412 LHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA--CKKNCKLDVIEMLLD 464

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 10/158 (6%)

Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIK 223
           ++ A   GD+  ++ L+  G   +   Y DG +PLHLAT     DI   LI +G D +I 
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 224 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNG 281
           +    +PL  A+  G      LL+   A L+++D      L  A+A+GD    K +L +G
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191

Query: 282 VDPSSRDYDHRTP----LHVAASEGLYLMAKLLLEAGA 315
            +    DY  +      L  A       + +L ++ GA
Sbjct: 192 ANI---DYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 166 NSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY---EDITLFLIQKGVDINI 222
           N   Y   L  +K LI  GAD NK + DG +PL+   S GY    +I LF+I+ G D  +
Sbjct: 81  NIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL 140

Query: 223 KDKFGNTPLLEAIKCGHD---GVTSLLVKEGASLNV-------DDAGSFLCTAVARGDSD 272
            DK G T L   ++  H     +  LL+++G  +N        D    +    + R D+D
Sbjct: 141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDAD 200

Query: 273 FLKRVLSNGVDPSSRDYDHRTPL 295
            LK  + NG   +  +  H+   
Sbjct: 201 ILKLFVDNGFIINKENKSHKKKF 223

Length = 489

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  G   N  D  G +PLH A      +   +L+  G + N+ +K+G+TPL  AI   +
Sbjct: 178 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN 237

Query: 240 DGVTSLLVKEGASLNV 255
             +  LL+  G S+  
Sbjct: 238 KEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 194 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
           GR+ LH A   G  ++  +L++KGVDIN  D+ GNT L  A + G+  V  LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 25/153 (16%)

Query: 216 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDF 273
           KG  INI      TPL++AI+ G   +  L +K GA +N  +      L TA+  G  D 
Sbjct: 24  KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI 83

Query: 274 LKRVLSNGVDPS-----------------------SRDYDHRTPLHVAASEGLYLMAKLL 310
           +K ++ NGVD S                        +D + +T LH A  +G     K+L
Sbjct: 84  IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML 143

Query: 311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            E GA V  +D  G  P+         ++IKLL
Sbjct: 144 FEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GAD N  D    +P+H A  RG   +   L+  G D+NI      + L  A+   +
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKN 223

Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
                 ++   +++N +D    L  A+   D +    +   G   +S D    TPLH A+
Sbjct: 224 IDTIKAIIDNRSNINKNDLS--LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHAS 281

Query: 300 -SEGLYLMAKLLLEAGASVFTKDRWGNTPL 328
            +  L  +   LLE GA V  K+  G TPL
Sbjct: 282 QAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 180 LIRAG-ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 231
           L+  G  D N TD +G +PLHLA   G  ++  +L++ GVD+N++D  G T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 9/147 (6%)

Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRV 277
           + + K       L          +   L+ +      D  G   L +A ++GD   +K +
Sbjct: 33  NPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL 92

Query: 278 LSNGVDPSSRDYDHRTPLHVAA-----SEGLYLMAKLLLEAGAS---VFTKDRWGNTPLD 329
           L++G D +++D D  TPLH+AA      EG   +AKLLLEAGA       +D  GNTPL 
Sbjct: 93  LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 330 EGRMCGNKNLIKLLEDAECTQLSEFHY 356
              + G+ ++++LL +A     S   Y
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
           DG +PLHLA   G+ ++   L++ G D+N +DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 180 LIRAGADPNKTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238
           L  AG   N  D    +PLH A+ +     +   L+++G D+N K+  G TPL    K G
Sbjct: 259 LYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNG 318

Query: 239 HDGVT-SLLVKEGASLNVDDAGSFLCTAVARGDS-----DFLKRVLSNGVDPSSRDYDHR 292
           +D      L+  GA +N  D      T + +  +     D +  +L  G + ++RDY  +
Sbjct: 319 YDTENIRTLIMLGADVNAAD--RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK 376

Query: 293 TPLHVAASEGLYLMAKLLLEAGASV 317
           TP+H AA     ++   LL+ GA +
Sbjct: 377 TPIHYAAVRNNVVIINTLLDYGADI 401

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI 214
           AA  G L  +K L+  G D N+TD DG + LH+A   G  ++   L+
Sbjct: 8   AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 7/151 (4%)

Query: 173 DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL 231
           D   ++ LI  GAD N  D    +PLH A++    +DI + L++ G ++N +D    TP+
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379

Query: 232 LEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFL--KRVLSNGVDPSSR 287
             A    +  + + L+  GA +       G+ L  A+  G + ++  K ++  G + +S+
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALC-GTNPYMSVKTLIDRGANVNSK 438

Query: 288 DYDHRTPLHVAASEGLYL-MAKLLLEAGASV 317
           + D  TPLH A  +   L + ++LL+ GA V
Sbjct: 439 NKDLSTPLHYACKKNCKLDVIEMLLDNGADV 469

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 22/53 (41%), Positives = 26/53 (49%)

Query: 291 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            RT LH AA  G   + K LLE G  +   D  GNT L      GN  ++KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)

Query: 177 LKGLIRAGADPNKTDYDGRSPLHLATSR------------------GYEDITL------- 211
           +K L+  G + N+ D+   +PLH+                       Y  + +       
Sbjct: 53  VKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR 112

Query: 212 -FLIQKGVDINIKDKFGNTPLLEAIKCGHDG-----VTSLLVKEGASLNVDD---AGSFL 262
              I K +  N         L+   K   D      +T LL+  GA +N+ D     + L
Sbjct: 113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTAL 172

Query: 263 CTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322
             A    D    + +LS G + +  D  + +PLH A       +  +LLE GAS   +D+
Sbjct: 173 HYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK 232

Query: 323 WGNTPL--DEGRMCGNKNLIKLL 343
            GNTPL    G  C + +++KLL
Sbjct: 233 CGNTPLHISVGY-CKDYDILKLL 254

Length = 477

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 90  LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           LF G   E + ++   + E  F  GEVI+ QG+  D LY V  G +
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSV 46

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 209 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCTAV 266
           I   L++ G D+N KD +  TP+  A + G+  + +LL+  GA +N+   D  S L  AV
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 267 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 326
              + D +K ++ N  + +  D    + L    +E L   + LL +AG SV + D   NT
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDL---SLLKAIRNEDLE-TSLLLYDAGFSVNSIDDCKNT 275

Query: 327 PL 328
           PL
Sbjct: 276 PL 277

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 27/197 (13%)

Query: 174 LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL-- 231
           +  +K +I      + +      PL+LA      D+   L+  G DIN   K  +TPL  
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHY 74

Query: 232 --LEAIKCGHD-GVTSLLVKEGASLNV-DDAGS---FLCTAVARGDSDFLKRVLSNGVDP 284
                        +  LL++ GA++N  D+ G        +        ++ +L NG + 
Sbjct: 75  LSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134

Query: 285 SSRDYDHRTPLHVAAS--------------EGLYLMAK----LLLEAGASVFTKDRWGNT 326
           + ++ D    LH+                 +G+ + AK     LL  G  +  KD +G T
Sbjct: 135 NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFT 194

Query: 327 PLDEGRMCGNKNLIKLL 343
           PL       N   +K L
Sbjct: 195 PLHYAVYNNNPEFVKYL 211

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 290 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322
           D  TPLH+AA  G   + KLLLEAGA V  +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLF-LIQKGVDINIKDKFGNTPLLEAIK 236
           +++ G  P+K D+DG +PLH+  S+  +++ +  L+    D+N ++KFG++PL   IK
Sbjct: 194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIK 251

Length = 446

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 260 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311
           + L  A   G  + +K +L  GVD +  D D  T LH+AA  G   + KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 278 LSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 329
           L +G +D ++ D +  TPLH+AA  G   + + LL+ G  +  +D  G T LD
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           ++ AA  G+   +  L+  GAD N    D  S L  A      D    +I    +IN  D
Sbjct: 182 IHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKND 241

Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKE-GASLN-VDD-AGSFLCTAV-ARGDSDFLKRVLSN 280
                 LL+AI+   D  TSLL+ + G S+N +DD   + L  A  A   S  + ++L  
Sbjct: 242 ----LSLLKAIR-NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER 296

Query: 281 GVDPSSRDYDHRTPLHVAASEGLYLM-AKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKN 338
           G D ++++    TPL++ A  G      + L+  GA V   DR   TPL +      NK+
Sbjct: 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKD 356

Query: 339 -LIKLLE 344
            +I LLE
Sbjct: 357 IVITLLE 363

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINI 222
           DGR+PLHLA   G  ++   L+ KG DIN 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINI 222
           DG +PLHLA   G  ++   L++ G DIN 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 32/141 (22%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 192 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 251
           Y G SPL+ A   G   I   L +   DI   D  GNT LL            ++  E  
Sbjct: 173 YHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNT-LLHL---------LVMENEFK 222

Query: 252 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS----RDYDHRTPLHVAASEGLYLMA 307
           +             ++    +F   +L    D        ++   TPL +AA EG  ++ 
Sbjct: 223 AEY---------EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLF 273

Query: 308 KLLLEAGASVFTKDRWGNTPL 328
           +L L           W N   
Sbjct: 274 RLKLAIKYKQKKFVAWPNGQQ 294

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 90  LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           LFK   +E + ++   +    +  GEVI+ QG+V D  Y +  G +
Sbjct: 1   LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEV 46

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           GNTPL  A + GH  V  LL++ GA +N  D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 245 LLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 298
           LL      LN  D      L  A   G  + ++ +L  GVD + RD D  T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 231 LLEAIKCGHDGVTSLLVKEGASLN--VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
           L +AI  G   +   L+  G + N  + D  S +  A+   DS+ +K ++ +G  P  + 
Sbjct: 6   LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65

Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGA---SVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            D  + LH A  EG     + LL+ G     VF KD  G TPL    +    +++KLL
Sbjct: 66  PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDIMKLL 121

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           ++ A Y+ +   +K L+  GA+PN  +  G +PLH+A     ++I   L+  G  I    
Sbjct: 196 LHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII 255

Query: 225 KF 226
           + 
Sbjct: 256 ET 257

Length = 422

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 41/182 (22%)

Query: 177 LKGLIRAGADPNKTDYDGRSPLH--LATSRGYE---DITLFLIQKGVDINIKDKFGNTPL 231
           +K  I  GA+ N  D +  +PL   L+  + Y+   DI   LI+ G DIN K+  G TPL
Sbjct: 54  VKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113

Query: 232 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH 291
              +  G+             +N               + + L  ++ NG D +  D D 
Sbjct: 114 YCLLSNGY-------------IN---------------NLEILLFMIENGADTTLLDKDG 145

Query: 292 RTPLHVAASEGLYL---MAKLLLEAGASVFTKDRW-GNTPLD----EGRMCGNKNLIKLL 343
            T L V      ++   + KLLLE G  + T +       L           + +++KL 
Sbjct: 146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF 205

Query: 344 ED 345
            D
Sbjct: 206 VD 207

Length = 489

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 213 LIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 258
           L++ G +D+N  D  GNTPL  A K G   +   L+K G  LN+ D+
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS 47

Length = 56

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 176 QLKGLIRAGADPN-KTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLE 233
           +LK L+  GAD N K    G +PLH+A  ++ YE  T    Q GV++ I +    TP   
Sbjct: 73  KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV 132

Query: 234 AIKCGHDGVTSLLVKEGASLNV 255
           A +     + ++L  +GA   V
Sbjct: 133 ACERHDAKMMNILRAKGAQCKV 154

Length = 154

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)

Query: 148 SDITFHIGKHEAELALRVNSAAYHG-------DLYQLKGLIRA-GADPNKTDYDGRSPL- 198
            DI   + +   E    VN  A HG       D Y +K L++  G D      DG  P+ 
Sbjct: 342 GDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIG 401

Query: 199 HLATSR-GYEDITLFLIQKGV---------------------DINIKDKFGNTPLLEAIK 236
           HL  S  G  +   +  +KG+                     DIN+ DK G T L +A++
Sbjct: 402 HLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVR 461

Query: 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271
                + SLL++ G+ +N+     + C A+A  +S
Sbjct: 462 YNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINES 496

Length = 661

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG0498	727	consensus K+-channel ERG and related proteins, con	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	99.61
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	99.39
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.02
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.97
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.93
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.9
PF13606	30	Ank_3: Ankyrin repeat	98.87
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
PF13606	30	Ank_3: Ankyrin repeat	98.8
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.74
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.69
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.69
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.67
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.64
KOG0522	560	consensus Ankyrin repeat protein [General function	98.62
KOG0522	560	consensus Ankyrin repeat protein [General function	98.61
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.41
KOG2384	223	consensus Major histocompatibility complex protein	98.37
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.37
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.36
KOG0511	516	consensus Ankyrin repeat protein [General function	98.29
KOG2384	223	consensus Major histocompatibility complex protein	98.21
KOG0511	516	consensus Ankyrin repeat protein [General function	98.13
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.0
KOG2505	591	consensus Ankyrin repeat protein [General function	97.4
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.91
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.91
KOG2505	591	consensus Ankyrin repeat protein [General function	96.88
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.81
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.53
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.46
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.93
cd06537	81	CIDE_N_B CIDE_N domain of CIDE-B proteins. The CID	92.06
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.64
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	90.69
cd01615	78	CIDE_N CIDE_N domain, found at the N-terminus of t	90.42
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.01
PF00520	200	Ion_trans: Ion transport protein calcium channel s	89.94
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	88.69
smart00266	74	CAD Domains present in proteins implicated in post	88.65
cd06539	78	CIDE_N_A CIDE_N domain of CIDE-A proteins. The CID	88.55
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	88.51
cd00038	115	CAP_ED effector domain of the CAP family of transc	88.06
PLN02868	413	acyl-CoA thioesterase family protein	87.26
cd06538	79	CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The	86.92
cd06536	80	CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cel	86.22
PF02017	78	CIDE-N: CIDE-N domain; InterPro: IPR003508 This do	85.76
KOG1113	368	consensus cAMP-dependent protein kinase types I an	84.52
cd06535	77	CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE	82.08
PF03607	60	DCX: Doublecortin; InterPro: IPR003533 X-linked li	81.62

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=1.1e-63  Score=531.64  Aligned_cols=440  Identities=30%  Similarity=0.476  Sum_probs=366.4

Q ss_pred             CEeeeccCC-CCChhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhhhhhhhhhhcCcHHHHH-----
Q 013471            1 MEFAFFRGL-PENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY-----   74 (442)
Q Consensus         1 ~~~~f~~~~-~~~~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~~~~~d~~~~~p~~~~~-----   74 (442)
                      |+++|.... ...|+++|+++|++|++||+++|+|||++++++.+|.||++|++||+++||++|+++.+|++++.     
T Consensus        81 ~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~  160 (823)
T PLN03192         81 FEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITG  160 (823)
T ss_pred             HHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcC
Confidence            567887643 44699999999999999999999999999999889999999999999999999999999997641     


Q ss_pred             --------------------------------------------------------------------------------
Q 013471           75 --------------------------------------------------------------------------------   74 (442)
Q Consensus        75 --------------------------------------------------------------------------------   74 (442)
                                                                                                      
T Consensus       161 ~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~  240 (823)
T PLN03192        161 TVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIP  240 (823)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 013471           75 --------------------------------------------------------------------------------   74 (442)
Q Consensus        75 --------------------------------------------------------------------------------   74 (442)
                                                                                                      
T Consensus       241 ~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~  320 (823)
T PLN03192        241 NFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAA  320 (823)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------------------------HHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccc
Q 013471           75 ---------------------------------------------KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEE  109 (442)
Q Consensus        75 ---------------------------------------------~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e  109 (442)
                                                                   +|++++|.++++++++|+++|++++.+++..++++
T Consensus       321 ~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~  400 (823)
T PLN03192        321 SNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAE  400 (823)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhhee
Confidence                                                         78999999999999999999999999999999999


Q ss_pred             cccCcceeeecCcccceeEEEeecccccc-----ch--------------------------------------------
Q 013471          110 FFLPGEVIMEQGNVVDQLYFVCHGVLGKE-----SN--------------------------------------------  140 (442)
Q Consensus       110 ~~~p~e~ii~~~~~~~~ly~i~~g~~~~~-----~~--------------------------------------------  140 (442)
                      +++|++.++.+|+.++.+|++++|.+.-.     ..                                            
T Consensus       401 ~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~  480 (823)
T PLN03192        401 YIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLI  480 (823)
T ss_pred             eeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHH
Confidence            99999999999999999999999987100     00                                            


Q ss_pred             -----------HHHHhhhc------ccc-------cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCh
Q 013471          141 -----------LRLKQLKS------DIT-------FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRS  196 (442)
Q Consensus       141 -----------~~~~~~~~------~~~-------~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  196 (442)
                                 ..+..+..      +..       ......+..+.++|+.||..|+.++++.|++.|+++|..|..|+|
T Consensus       481 ~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~T  560 (823)
T PLN03192        481 EAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRT  560 (823)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcccccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence                       00000000      000       000112234568899999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHH
Q 013471          197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR  276 (442)
Q Consensus       197 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~  276 (442)
                      |||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.++..+...+.++||.|+.+|+.++++.
T Consensus       561 pLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~  640 (823)
T PLN03192        561 PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKE  640 (823)
T ss_pred             HHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988888888899999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHH--HHHcCCCccc-
Q 013471          277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG-NTPLDEGRMCGNKNLIKL--LEDAECTQLS-  352 (442)
Q Consensus       277 Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-~tpl~~A~~~~~~~~v~~--Ll~~~a~~~~-  352 (442)
                      |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..|..| .||++.+......+...-  +.+..+.... 
T Consensus       641 Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  720 (823)
T PLN03192        641 LLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEPD  720 (823)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHhhhCceeeeccCCCccccc
Confidence            999999999999999999999999999999999999999999999988 999988866544332111  1111110000 


Q ss_pred             -------ccccccchhhcccCCCcceecCCCCCCccc--cccCceEEEccCcHHHHHHHHhhhcCCCCCCc-ccccCCce
Q 013471          353 -------EFHYCSQGMIDKMHPRKCTVFPFHPWDEKV--HRRHGIVLWVPHNIEELIKLAVDKLDFPDGHS-ILSEDGGK  422 (442)
Q Consensus       353 -------~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~~~~lp~~~~~ll~~~~~k~~~~~~~~-~~~~~~~~  422 (442)
                             ................++.++..|+..++.  ....++++++|++++|+.+++++|+|+....+ +.++||||
T Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  800 (823)
T PLN03192        721 LGRDGGSRPGRLQGTSSDNQCRPRVSIYKGHPLLRNERCCNEAGKLINLPPSLEELKAIAGEKLGFDARKAMVTNEEGAE  800 (823)
T ss_pred             cccccccccccccccccccccCceEEEecCCCcccccccccccCeEEeCCccHHHHHHHHHHHhCCCcccceeecCCCce
Confidence                   000000111123334567888888876654  45789999999999999999999999877654 56999999


Q ss_pred             eeEeeeeecCCeEEEeec
Q 013471          423 ILDVDMINDGQKLYLISE  440 (442)
Q Consensus       423 i~~i~~ird~d~~~~~~~  440 (442)
                      |++|+||||||+||++++
T Consensus       801 ~~~~~~~~~~~~~~~~~~  818 (823)
T PLN03192        801 IDSIEVIRDNDKLFVVED  818 (823)
T ss_pred             eeeeEEEecCCEEEEeec
Confidence            999999999999999986

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-36  Score=278.47  Aligned_cols=194  Identities=22%  Similarity=0.168  Sum_probs=179.3

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  235 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  235 (442)
                      ..+..|.||||+|+..|+.++++.|++.|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            467779999999999999999999999999988764  789999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCCC---ChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHH
Q 013471          236 KCGHDGVTSLLVKEGASLNVDDA---GSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLL  311 (442)
Q Consensus       236 ~~~~~~iv~~Ll~~g~~~~~~~~---~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll  311 (442)
                      ..|+.+++++|+++|++++..+.   .||||+|+..|+.+++++|++++.+.  .+ ..|+||||+|+..|+.+++++|+
T Consensus       103 ~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLL  180 (284)
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999887543   48999999999999999999987543  23 35899999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          312 EAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       312 ~~ga~~~~~~~~g~tp-l~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      ++|++++.+|..|.|| ||+|+.+|+.+++++|+++|++...+
T Consensus       181 ~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        181 DYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             HCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC
Confidence            9999999999999987 99999999999999999999987554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-37  Score=251.56  Aligned_cols=184  Identities=28%  Similarity=0.342  Sum_probs=163.6

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIR-AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEA  234 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A  234 (442)
                      .+..|+||||+||..|+.+++.+|++ .+..+|..|..|+||||.||..|+.++|+.|+.+ |+|+|..++.|.|+||+|
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyA  113 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYA  113 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhh
Confidence            34478999999999999999999994 4677888899999999999999999999999998 999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 013471          235 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  312 (442)
Q Consensus       235 ~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~  312 (442)
                      +..|+.+|+++|+++|+.++.++  +.||||-|+..|+++++++|+..|+.+|.+|..|+||||.|...|+.++..+|++
T Consensus       114 agK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             hcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence            99999999999999999988877  4589999999999999999999999999999999999999988999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 013471          313 AGASVFTKDRWGNTPLDEGRMCGNKNLIK  341 (442)
Q Consensus       313 ~ga~~~~~~~~g~tpl~~A~~~~~~~~v~  341 (442)
                      +||+++..|++| ||+..|+-.-...+.+
T Consensus       194 ~gAd~~~edke~-t~~~~a~~~l~~alk~  221 (226)
T KOG4412|consen  194 AGADTDREDKEG-TALRIACNELLEALKE  221 (226)
T ss_pred             hccceeeccccC-chHHHHHHHHHHHHHH
Confidence            999999999988 9988776544444443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-36  Score=246.62  Aligned_cols=192  Identities=31%  Similarity=0.412  Sum_probs=177.4

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCC-CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcC
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDY-DGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIKCG  238 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~  238 (442)
                      .++.+.++......-++.++++.+ .++.++. +|+||||+||..|+.+++++|++ -+..+|.+|..|+||||.|+..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            456778888888888899988876 5777765 99999999999999999999995 58889999999999999999999


Q ss_pred             CHHHHHHHHHc-CCCCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCC
Q 013471          239 HDGVTSLLVKE-GASLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA  315 (442)
Q Consensus       239 ~~~iv~~Ll~~-g~~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga  315 (442)
                      +.++|+.|+.+ |+++|..  .+.|+||+|+..|..+++++|+++|+.++.+|..|.||||.|+..|.++++++|+..|+
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a  163 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA  163 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCC
Confidence            99999999999 9999884  45699999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          316 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       316 ~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      .+|.+|..|+||||.|.-.|+.++..+|+++||+...+
T Consensus       164 ~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~e  201 (226)
T KOG4412|consen  164 PLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRE  201 (226)
T ss_pred             CCCcccccCccHHHHHHhccCchHHHHHHHhccceeec
Confidence            99999999999999999999999999999999875443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-35  Score=289.60  Aligned_cols=188  Identities=26%  Similarity=0.305  Sum_probs=108.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i  242 (442)
                      ++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.++
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~   83 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA   83 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHcCCCCCc---CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCC
Q 013471          243 TSLLVKEGASLNV---DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  319 (442)
Q Consensus       243 v~~Ll~~g~~~~~---~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~  319 (442)
                      +++|++.|+..+.   .++.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus        84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~  163 (413)
T PHA02875         84 VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI  163 (413)
T ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            5555555544321   2344555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          320 KDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       320 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                      +|..|+||||+|+..|+.+++++|+++|++.
T Consensus       164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        164 EDCCGCTPLIIAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            5555555555555555555555555555543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=262.10  Aligned_cols=186  Identities=17%  Similarity=0.190  Sum_probs=171.9

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCC
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN-TPLLEAIKCGH  239 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-tpL~~A~~~~~  239 (442)
                      +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~  140 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  140 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence            57999999999999999999999999999999999999999999999999999999999999998885 89999999999


Q ss_pred             HHHHHHHHHcCCCC-CcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHhChHHHHHHHHHCCCCC
Q 013471          240 DGVTSLLVKEGASL-NVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASV  317 (442)
Q Consensus       240 ~~iv~~Ll~~g~~~-~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-Lh~A~~~g~~~iv~~Ll~~ga~~  317 (442)
                      .+++++|++++.+. +...+.||||+|+.+|+.+++++|+++|++++.++..|.|| ||+|+..|+.++|++|+++|+++
T Consensus       141 ~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        141 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             HHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999987654 22346899999999999999999999999999999999987 99999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       318 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      +.+|..| +||      ++.|++++|+++.++-.+.
T Consensus       221 n~~~~~~-~~l------~~~e~~~~ll~~~~~~~~~  249 (284)
T PHA02791        221 YSVNLEN-VLL------DDAEIAKMIIEKHVEYKSD  249 (284)
T ss_pred             ccCcccC-ccC------CCHHHHHHHHHhhhhhccc
Confidence            9999954 666      8999999999988764443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=286.38  Aligned_cols=204  Identities=28%  Similarity=0.353  Sum_probs=193.5

Q ss_pred             cccccccccchhhhhHHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCC
Q 013471          148 SDITFHIGKHEAELALRVNSAA--YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIK  223 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~  223 (442)
                      .+....++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++.+
T Consensus        93 l~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~  172 (480)
T PHA03100         93 LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK  172 (480)
T ss_pred             HHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccc
Confidence            3445566777888999999999  999999999999999999999999999999999999  999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC--------ChHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCc
Q 013471          224 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA--------GSFLCTAVARGD--SDFLKRVLSNGVDPSSRDYDHRT  293 (442)
Q Consensus       224 ~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~--------~~~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t  293 (442)
                      +..|.||||+|+..|+.+++++|+++|++++..+.        .+|||.|+..|+  .+++++|+++|++++.+|..|.|
T Consensus       173 d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~T  252 (480)
T PHA03100        173 NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFT  252 (480)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            99999999999999999999999999999987543        689999999999  99999999999999999999999


Q ss_pred             HHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          294 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       294 ~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      |||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|+++|++..
T Consensus       253 pL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        253 PLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=286.65  Aligned_cols=221  Identities=26%  Similarity=0.316  Sum_probs=201.8

Q ss_pred             ccccccccchhhhhHHHHH-----HHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCC
Q 013471          149 DITFHIGKHEAELALRVNS-----AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAT--SRGYEDITLFLIQKGVDIN  221 (442)
Q Consensus       149 ~~~~~~~~~~~~~~t~L~~-----A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~~  221 (442)
                      +.+...+..+..+.||||.     |+..|+.+++++|+++|++++..+..|.||||+|+  ..|+.+++++|+++|++++
T Consensus        56 ~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~  135 (480)
T PHA03100         56 DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN  135 (480)
T ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC
Confidence            3345566667778899999     99999999999999999999999999999999999  9999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC------
Q 013471          222 IKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH------  291 (442)
Q Consensus       222 ~~~~~g~tpL~~A~~~~--~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g------  291 (442)
                      ..+..|.||||+|+..|  +.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+..|      
T Consensus       136 ~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~  215 (480)
T PHA03100        136 IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF  215 (480)
T ss_pred             ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH
Confidence            99999999999999999  9999999999999988754  5699999999999999999999999999999999      


Q ss_pred             CcHHHHHHHhCh--HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCc
Q 013471          292 RTPLHVAASEGL--YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRK  369 (442)
Q Consensus       292 ~t~Lh~A~~~g~--~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~  369 (442)
                      .||||.|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++...              .+.
T Consensus       216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~--------------~d~  281 (480)
T PHA03100        216 ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL--------------VNK  281 (480)
T ss_pred             HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--------------cCC
Confidence            999999999999  9999999999999999999999999999999999999999999995433              234


Q ss_pred             ceecCCCCCCcccc
Q 013471          370 CTVFPFHPWDEKVH  383 (442)
Q Consensus       370 ~~~~~~h~~~~~~~  383 (442)
                      .+.+|+|.|...++
T Consensus       282 ~g~tpl~~A~~~~~  295 (480)
T PHA03100        282 YGDTPLHIAILNNN  295 (480)
T ss_pred             CCCcHHHHHHHhCC
Confidence            45567777666555

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-33  Score=276.70  Aligned_cols=203  Identities=23%  Similarity=0.164  Sum_probs=188.2

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCC
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN-IKDKFGN  228 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~  228 (442)
                      .....+.....|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.+++++|++.|++.+ ..+..|.
T Consensus        24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  103 (413)
T PHA02875         24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM  103 (413)
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC
Confidence            344555666679999999999999999999999999999998999999999999999999999999998764 4567899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHH
Q 013471          229 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM  306 (442)
Q Consensus       229 tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~i  306 (442)
                      ||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus       104 tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~ei  183 (413)
T PHA02875        104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAI  183 (413)
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999999998754  5699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471          307 AKLLLEAGASVFTKDRWGN-TPLDEGRMCGNKNLIKLLEDAECTQLS  352 (442)
Q Consensus       307 v~~Ll~~ga~~~~~~~~g~-tpl~~A~~~~~~~~v~~Ll~~~a~~~~  352 (442)
                      +++|+++|++++..+..|. ||+|+|+..|+.+++++|+++|++...
T Consensus       184 v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            9999999999999998875 789999999999999999999998753

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=278.85  Aligned_cols=242  Identities=20%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             ccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCC-CCC
Q 013471          149 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINI-KDK  225 (442)
Q Consensus       149 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~-~~~  225 (442)
                      .....++..+..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..+  ..+++++|+++|++++. .+.
T Consensus        60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~  139 (446)
T PHA02946         60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE  139 (446)
T ss_pred             HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC
Confidence            345667788888999999999999999999999999999999999999999999876  48999999999999995 689


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHh
Q 013471          226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARG--DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE  301 (442)
Q Consensus       226 ~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~  301 (442)
                      .|.|||| |+..++.+++++|++.|++++..+  +.||||.|+..+  +.+++++|+++|++++.+|.+|+||||+|+..
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            9999997 667799999999999999988755  569999988765  46899999999999999999999999999998


Q ss_pred             C--hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCcccccccc-----cchh---hcccCCCcc
Q 013471          302 G--LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAECTQLSEFHYC-----SQGM---IDKMHPRKC  370 (442)
Q Consensus       302 g--~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~-~~~v~~Ll~~~a~~~~~~~~~-----~~~~---~~~~~~~~~  370 (442)
                      |  +.+++++|++ |++++.+|..|+||||+|+..++ .+++++|+++|+.........     ....   ... .....
T Consensus       219 ~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~-~g~~~  296 (446)
T PHA02946        219 TVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIIND-KGKQY  296 (446)
T ss_pred             CCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHH-cCccc
Confidence            6  8899999995 99999999999999999999988 589999999997543221000     0000   000 11123


Q ss_pred             eecCCCCCCccccccCceEEEccCcHHHHHHH
Q 013471          371 TVFPFHPWDEKVHRRHGIVLWVPHNIEELIKL  402 (442)
Q Consensus       371 ~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~  402 (442)
                      +.+|+|.|+..++         .+.++-|++.
T Consensus       297 ~~TpLh~Aa~~g~---------~eivk~Ll~~  319 (446)
T PHA02946        297 DSTDFKMAVEVGS---------IRCVKYLLDN  319 (446)
T ss_pred             CCCHHHHHHHcCC---------HHHHHHHHHC
Confidence            5589999988887         4555555553

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-33  Score=282.59  Aligned_cols=192  Identities=31%  Similarity=0.393  Sum_probs=170.8

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCH--------------------------------
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE--------------------------------  207 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--------------------------------  207 (442)
                      .+.||||.|+..|+.+++++|+++|+++|.+|..|.||||+||..|+.                                
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            466899999999999999999999999999999999999999876543                                


Q ss_pred             --------------------------------HHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013471          208 --------------------------------DITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLN  254 (442)
Q Consensus       208 --------------------------------~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~~g~~~~  254 (442)
                                                      +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n  195 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN  195 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC
Confidence                                            2677778888999988888 9999999999999999999999999988


Q ss_pred             cCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHh-ChHHHHHHHHHCCCCCCCCCC-CCCCHHHH
Q 013471          255 VDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE-GLYLMAKLLLEAGASVFTKDR-WGNTPLDE  330 (442)
Q Consensus       255 ~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~-g~~~iv~~Ll~~ga~~~~~~~-~g~tpl~~  330 (442)
                      ..+  +.||||.|+..|+.+++++|+++|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~  275 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS  275 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHH
Confidence            754  56999999999999999999999999999999999999999976 689999999999999999886 79999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCcccc
Q 013471          331 GRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       331 A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      |  .++.+++++|+++|++....
T Consensus       276 A--~~~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        276 S--IKSERKLKLLLEYGADINSL  296 (477)
T ss_pred             H--ccCHHHHHHHHHCCCCCCCc
Confidence            9  57889999999999975543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.1e-33  Score=275.88  Aligned_cols=190  Identities=32%  Similarity=0.382  Sum_probs=137.2

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC---------------
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV---------------  218 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---------------  218 (442)
                      ++.....+.||||.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|+               
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i  107 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMI  107 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHH
Confidence            33444556777888888888888887777777777777777777777777777777777776554               


Q ss_pred             --------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 013471          219 --------DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD  288 (442)
Q Consensus       219 --------~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  288 (442)
                              +++.++..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+
T Consensus       108 ~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~  187 (434)
T PHA02874        108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD  187 (434)
T ss_pred             HHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC
Confidence                    345566777777777777777777777777777776643  4577777777777777777777777777777


Q ss_pred             CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 013471          289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  344 (442)
Q Consensus       289 ~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll  344 (442)
                      ..|+||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++ +++++|+
T Consensus       188 ~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll  242 (434)
T PHA02874        188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI  242 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH
Confidence            777777777777777777777777777766666666666666665543 3444444

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=278.60  Aligned_cols=223  Identities=26%  Similarity=0.317  Sum_probs=196.9

Q ss_pred             hcccccccccchhhhhHHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCC
Q 013471          147 KSDITFHIGKHEAELALRVNSAAYHG-DLYQLKGLIRAGADPNKTDYDGRSPLHLAT--SRGYEDITLFLIQKGVDINIK  223 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~~~~  223 (442)
                      .-+....++..+..|.||||+|+..| +.+++++|+++|++++.++..|.||||+|+  ..++.+++++|+++|++++.+
T Consensus        69 Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~  148 (471)
T PHA03095         69 LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL  148 (471)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc
Confidence            33555677777788999999999999 599999999999999999999999999999  556899999999999999999


Q ss_pred             CCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC--CChHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 013471          224 DKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCTAVAR--GDSDFLKRVLSNGVDPSSRDYDHRTPLHV  297 (442)
Q Consensus       224 ~~~g~tpL~~A~~~~--~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~  297 (442)
                      +..|.||||+|+..+  +.+++++|+++|++++..+  +.||||.|+..  ++.++++.|+++|++++.+|..|+||||+
T Consensus       149 d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~  228 (471)
T PHA03095        149 DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHS  228 (471)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            999999999999876  5899999999999987754  56999999875  78899999999999999999999999999


Q ss_pred             HHHhChH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCC
Q 013471          298 AASEGLY--LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF  375 (442)
Q Consensus       298 A~~~g~~--~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (442)
                      |+..|+.  .+++.|+++|++++.+|..|+||||+|+..|+.+++++|+++|++....              +..+.+|+
T Consensus       229 Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~--------------~~~g~tpl  294 (471)
T PHA03095        229 MATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAV--------------SSDGNTPL  294 (471)
T ss_pred             HHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc--------------CCCCCCHH
Confidence            9999864  6889999999999999999999999999999999999999999965433              33455677


Q ss_pred             CCCCcccc
Q 013471          376 HPWDEKVH  383 (442)
Q Consensus       376 h~~~~~~~  383 (442)
                      |.|...++
T Consensus       295 ~~A~~~~~  302 (471)
T PHA03095        295 SLMVRNNN  302 (471)
T ss_pred             HHHHHhCC
Confidence            77766665

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-32  Score=281.62  Aligned_cols=198  Identities=19%  Similarity=0.175  Sum_probs=175.2

Q ss_pred             cccccc-hhhhhHHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCC
Q 013471          152 FHIGKH-EAELALRVNSAAY--HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKF  226 (442)
Q Consensus       152 ~~~~~~-~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~ga~~~~~~~~  226 (442)
                      ..++.. +..|.||||.|+.  .++.+++++|+++|+++|.+|..|.||||+|++.|+  .++|++|+++||+++.++..
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~  246 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVN  246 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCC
Confidence            556665 7779999999865  468999999999999999999999999999999995  59999999999999999999


Q ss_pred             CCcHHHHH-------------------------------------HHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHH
Q 013471          227 GNTPLLEA-------------------------------------IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVA  267 (442)
Q Consensus       227 g~tpL~~A-------------------------------------~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~  267 (442)
                      |.||||.|                                     +..|+.+++++|+++|++++..+  +.||||+|+.
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa  326 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYIL  326 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHH
Confidence            99999975                                     34577899999999999998754  5699999865


Q ss_pred             --cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--------------hChHHHHHHHHHCCCCCCCCCCCCCCHHHH-
Q 013471          268 --RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS--------------EGLYLMAKLLLEAGASVFTKDRWGNTPLDE-  330 (442)
Q Consensus       268 --~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~--------------~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~-  330 (442)
                        .++.+++++|+++|++++.+|..|+||||+|+.              .++.+++++|+++|++++.+|..|+||||. 
T Consensus       327 ~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y  406 (764)
T PHA02716        327 RHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSY  406 (764)
T ss_pred             HhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHH
Confidence              468899999999999999999999999999875              368999999999999999999999999993 


Q ss_pred             ---HHHcCCHHHHHHHHHcCCC
Q 013471          331 ---GRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       331 ---A~~~~~~~~v~~Ll~~~a~  349 (442)
                         |...++.+++++|++.|+.
T Consensus       407 ~~~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        407 ICTAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             HHHHHhcChHHHHHHHHhCcch
Confidence               3345789999999998753

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=272.23  Aligned_cols=206  Identities=24%  Similarity=0.242  Sum_probs=181.2

Q ss_pred             hHHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471          162 ALRVNSAA--YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  239 (442)
Q Consensus       162 ~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~  239 (442)
                      .++||.++  ..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~  117 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD  117 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence            56788766  4457899999999999999999999999999999999999999999999999999999999999998764


Q ss_pred             --HHHHHHHHHcCCCCCc---CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh--HHHHHHHHH
Q 013471          240 --DGVTSLLVKEGASLNV---DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL--YLMAKLLLE  312 (442)
Q Consensus       240 --~~iv~~Ll~~g~~~~~---~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~--~~iv~~Ll~  312 (442)
                        .+++++|+++|++++.   .++.|||+ |+..++.+++++|++.|++++.+|..|+||||+|+..++  .+++++|++
T Consensus       118 ~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~  196 (446)
T PHA02946        118 EVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMK  196 (446)
T ss_pred             chHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence              7899999999999984   35678997 777899999999999999999999999999999987654  689999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          313 AGASVFTKDRWGNTPLDEGRMCG--NKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       313 ~ga~~~~~~~~g~tpl~~A~~~~--~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +|++++.+|..|+||||+|+..+  +.+++++|++ |++.              ...+..+.+|+|.++..++
T Consensus       197 ~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi--------------n~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        197 LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV--------------NKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC--------------CCCCCCCCCHHHHHHHhCC
Confidence            99999999999999999999986  7899999985 6643              3344566677777666544

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-32  Score=275.91  Aligned_cols=209  Identities=25%  Similarity=0.260  Sum_probs=185.3

Q ss_pred             HHhhhcccccccccchhhhhHHHHHHHhc-----CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC---CHHHHHHHH
Q 013471          143 LKQLKSDITFHIGKHEAELALRVNSAAYH-----GDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG---YEDITLFLI  214 (442)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll  214 (442)
                      ..++.-+.+..++..+..|.||||.|+..     +..+++++|+++|+++|.+|..|.||||+|+..+   +.+++++|+
T Consensus        53 iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll  132 (489)
T PHA02798         53 IVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI  132 (489)
T ss_pred             HHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH
Confidence            33333455677788888899999998864     6799999999999999999999999999999976   789999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCC---CChHHHHHHHc----CCHHHHHHHHHCCCC-
Q 013471          215 QKGVDINIKDKFGNTPLLEAIKCGH---DGVTSLLVKEGASLNVDD---AGSFLCTAVAR----GDSDFLKRVLSNGVD-  283 (442)
Q Consensus       215 ~~ga~~~~~~~~g~tpL~~A~~~~~---~~iv~~Ll~~g~~~~~~~---~~~~L~~A~~~----g~~~~v~~Ll~~g~~-  283 (442)
                      ++|++++.+|..|.||||+|+..++   .+++++|+++|++++..+   +.||||.++..    ++.+++++|+++|++ 
T Consensus       133 ~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i  212 (489)
T PHA02798        133 ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII  212 (489)
T ss_pred             HcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc
Confidence            9999999999999999999999998   999999999999998753   45899988764    478889988887764 


Q ss_pred             --------------------------------------CCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCC
Q 013471          284 --------------------------------------PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN  325 (442)
Q Consensus       284 --------------------------------------~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  325 (442)
                                                            +|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|+
T Consensus       213 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~  292 (489)
T PHA02798        213 NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGN  292 (489)
T ss_pred             ccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCC
Confidence                                                  445677899999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          326 TPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       326 tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      |||+.|+.+++.++++.|++++++..
T Consensus       293 TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        293 TCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            99999999999999999999998764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=275.49  Aligned_cols=233  Identities=25%  Similarity=0.252  Sum_probs=207.4

Q ss_pred             cccccccchhhhhHHHHHHHhcC---CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCCCCCC
Q 013471          150 ITFHIGKHEAELALRVNSAAYHG---DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDK  225 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~  225 (442)
                      ....++..+..|.||||.|+..|   +.+++++|+++|+++|.++..|.||||+|+..| +.+++++|+++|++++.++.
T Consensus        36 ~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~  115 (471)
T PHA03095         36 AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK  115 (471)
T ss_pred             cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC
Confidence            34556677778999999999999   999999999999999999999999999999999 69999999999999999999


Q ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 013471          226 FGNTPLLEAI--KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARG--DSDFLKRVLSNGVDPSSRDYDHRTPLHVAA  299 (442)
Q Consensus       226 ~g~tpL~~A~--~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~  299 (442)
                      .|.||||+|+  ..++.+++++|+++|++++..+  +.||||.|+..+  +.+++++|+++|++++..+..|+||||+|+
T Consensus       116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~  195 (471)
T PHA03095        116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHL  195 (471)
T ss_pred             CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            9999999999  5567899999999999998754  569999998876  689999999999999999999999999999


Q ss_pred             Hh--ChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCcccccccccchhhcccCCCcceecCC
Q 013471          300 SE--GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK--NLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPF  375 (442)
Q Consensus       300 ~~--g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~--~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (442)
                      ..  ++.++++.|+++|++++.+|..|+||||+|+..|+.  .+++.|++.|++..              ..+..+.+|+
T Consensus       196 ~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din--------------~~d~~g~TpL  261 (471)
T PHA03095        196 QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN--------------ARNRYGQTPL  261 (471)
T ss_pred             HHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC--------------CcCCCCCCHH
Confidence            75  788999999999999999999999999999999975  68889999988533              3345677899


Q ss_pred             CCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471          376 HPWDEKVHRRHGIVLWVPHNIEELIKLAVD  405 (442)
Q Consensus       376 h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~  405 (442)
                      |.|+..++         ++.++.|++.|++
T Consensus       262 h~A~~~~~---------~~~v~~LL~~gad  282 (471)
T PHA03095        262 HYAAVFNN---------PRACRRLIALGAD  282 (471)
T ss_pred             HHHHHcCC---------HHHHHHHHHcCCC
Confidence            99888777         6677888876655

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.3e-32  Score=269.84  Aligned_cols=203  Identities=27%  Similarity=0.293  Sum_probs=181.1

Q ss_pred             ccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCC-----------------------CCCCCCCCCChHHHHHHHcC
Q 013471          149 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGA-----------------------DPNKTDYDGRSPLHLATSRG  205 (442)
Q Consensus       149 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----------------------~~~~~~~~g~t~L~~A~~~g  205 (442)
                      +....++..+..+.||||.|+..|+.+++++|+++|+                       +++.++..|.||||+|+..|
T Consensus        56 ~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~  135 (434)
T PHA02874         56 KHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKG  135 (434)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCC
Confidence            4445566667778999999999999999999988764                       45677889999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCC
Q 013471          206 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVD  283 (442)
Q Consensus       206 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~  283 (442)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+  +.||||.|+..|+.+++++|+++|++
T Consensus       136 ~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~  215 (434)
T PHA02874        136 DLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH  215 (434)
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999887654  56999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccc
Q 013471          284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       284 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~-~~~~v~~Ll~~~a~~~~~  353 (442)
                      ++.++..|.||||.|+..+. +.+++|+ .|++++.+|..|+||||+|+..+ +.+++++|+++|++....
T Consensus       216 i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~  284 (434)
T PHA02874        216 IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIK  284 (434)
T ss_pred             CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCC
Confidence            99999999999999998775 5666666 68999999999999999999876 789999999999975443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.7e-32  Score=276.43  Aligned_cols=223  Identities=20%  Similarity=0.189  Sum_probs=188.9

Q ss_pred             hcccccccccchhhhhHHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCChHHHHH-----------------------
Q 013471          147 KSDITFHIGKHEAELALRVNSAAYHGD--LYQLKGLIRAGADPNKTDYDGRSPLHLA-----------------------  201 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-----------------------  201 (442)
                      ..+....++..+..|.||||+|+..|+  .+++++|+++|+++|.++..|.||||+|                       
T Consensus       198 LLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~  277 (764)
T PHA02716        198 LCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK  277 (764)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence            334567788888899999999999995  5999999999999999999999999975                       


Q ss_pred             --------------HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCcCC--CChHHH
Q 013471          202 --------------TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK--CGHDGVTSLLVKEGASLNVDD--AGSFLC  263 (442)
Q Consensus       202 --------------~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~--~~~~~iv~~Ll~~g~~~~~~~--~~~~L~  263 (442)
                                    ++.|+.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++..+  +.||||
T Consensus       278 ~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        278 VKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             cccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHH
Confidence                          45578899999999999999999999999999875  457899999999999998865  569999


Q ss_pred             HHHH--------------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH----HHhChHHHHHHHHHCCC----------
Q 013471          264 TAVA--------------RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA----ASEGLYLMAKLLLEAGA----------  315 (442)
Q Consensus       264 ~A~~--------------~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A----~~~g~~~iv~~Ll~~ga----------  315 (442)
                      +|+.              .++.+++++|+++|++++.+|..|+||||.+    ...++.+++++|++.|+          
T Consensus       358 ~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q  437 (764)
T PHA02716        358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQ  437 (764)
T ss_pred             HHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhh
Confidence            9875              3689999999999999999999999999942    23467899999888653          


Q ss_pred             ---------------------------------------------------CCCCCCCCCCCHHHHHHHcCCHH-----H
Q 013471          316 ---------------------------------------------------SVFTKDRWGNTPLDEGRMCGNKN-----L  339 (442)
Q Consensus       316 ---------------------------------------------------~~~~~~~~g~tpl~~A~~~~~~~-----~  339 (442)
                                                                         +++..|..|+||||+|+..|+.+     +
T Consensus       438 ~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~  517 (764)
T PHA02716        438 DLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDS  517 (764)
T ss_pred             hhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHH
Confidence                                                               22445778999999999999874     4


Q ss_pred             HHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          340 IKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       340 v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +++|+++|++..              .++..+.+|+|.|..+++
T Consensus       518 ~k~LL~~GADIN--------------~~d~~G~TPLh~A~~~g~  547 (764)
T PHA02716        518 FVYLLSIQYNIN--------------IPTKNGVTPLMLTMRNNR  547 (764)
T ss_pred             HHHHHhCCCCCc--------------ccCCCCCCHHHHHHHcCC
Confidence            599999999543              345677889998887775

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=6.3e-32  Score=261.05  Aligned_cols=188  Identities=34%  Similarity=0.472  Sum_probs=142.5

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCC
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGH  239 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~~~~  239 (442)
                      ...++.|++.|+++.++.|++. |.+++..|.+|.|+||+||.+++.+++++|+++|+++|..+ .-+.||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            3457777777777777777777 77777777777777777777777777777777777777766 567777777777777


Q ss_pred             HHHHHHHHHcCCCCCcCCCC--hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCC
Q 013471          240 DGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  317 (442)
Q Consensus       240 ~~iv~~Ll~~g~~~~~~~~~--~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~  317 (442)
                      ..++++|+++|++++..|.+  +++|.|++.|+..++-+|+.+|++++.+|.+|+||||+|+.+|+...++.|++.|+++
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            77777777777777776644  6777777777777777777777777777777777777777777776677777777777


Q ss_pred             CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          318 FTKD-RWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       318 ~~~~-~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      ..+| ++|.||||+|+..|+..++++|++.|++
T Consensus       205 ~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             cccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence            7776 6777777777777777777755554443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=7.6e-32  Score=260.48  Aligned_cols=184  Identities=32%  Similarity=0.401  Sum_probs=175.2

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  229 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  229 (442)
                      ....+..|.+|.|+||+||.+++++++++|+++|+++|... .-+.||||+|+++|+..+|.+|+++||||+.+|.+|.+
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT  147 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence            67778888899999999999999999999999999999988 67899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLM  306 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~i  306 (442)
                      |||.|+..|+..++-+|+.+|++++.+|  ++||||+|+.+|+...+..|+..|+.+...| ..|+||||+|+..|+..+
T Consensus       148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~  227 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTA  227 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcce
Confidence            9999999999999999999999999866  5699999999999999999999999999988 999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHc
Q 013471          307 AKLLLEAGASVFTKDRWGNTPLDEGRMC  334 (442)
Q Consensus       307 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  334 (442)
                      +++|++.|++.+.+|.+|+||+++|...
T Consensus       228 v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  228 VKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             EehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9977788899999999999999999887

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-31  Score=263.53  Aligned_cols=235  Identities=28%  Similarity=0.310  Sum_probs=160.5

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  230 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  230 (442)
                      +...+..+..+.+|+|+|+..|+.++++.|++.|+|+|..|..|.||||+||..++.|..+.|++.|+++...|.+|++|
T Consensus       111 gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~  190 (929)
T KOG0510|consen  111 GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFP  190 (929)
T ss_pred             CCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCch
Confidence            34444455556677777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHH-----cCCCCCc--CCCChHHHHHHHcCCHHHHHHHHHCCCC---------------CCCCC
Q 013471          231 LLEAIKCGHDGVTSLLVK-----EGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVD---------------PSSRD  288 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~-----~g~~~~~--~~~~~~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~  288 (442)
                      +|.|+++|..++.+..+.     .+..++.  ..+.+|||.|+..|+.++++.+++.|..               +|..|
T Consensus       191 iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d  270 (929)
T KOG0510|consen  191 IHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDED  270 (929)
T ss_pred             HHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccc
Confidence            777777777777777776     3333333  3445777777777777777777776532               23456


Q ss_pred             CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccccccchhhcccCC
Q 013471          289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AECTQLSEFHYCSQGMIDKMHP  367 (442)
Q Consensus       289 ~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~-~~a~~~~~~~~~~~~~~~~~~~  367 (442)
                      ++|.||||+|+..|+.+++..|+..|++++.++.++.||||.|++.|+.++|+.|++ .+..             ..+..
T Consensus       271 ~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r-------------llne~  337 (929)
T KOG0510|consen  271 NDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTR-------------LLNES  337 (929)
T ss_pred             ccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc-------------ccccc
Confidence            777777777777777777777777777777777777777777777777777777776 2221             22233


Q ss_pred             CcceecCCCCCCccccccCceEEEccCcHHHHHHHHhhhc
Q 013471          368 RKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKL  407 (442)
Q Consensus       368 ~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~k~  407 (442)
                      +-.+.+|+|.++..+|         -+.++-|++-|+...
T Consensus       338 D~~g~tpLHlaa~~gH---------~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGH---------DRVVQLLLNKGALFL  368 (929)
T ss_pred             cccCCCchhhhhhcCH---------HHHHHHHHhcChhhh
Confidence            3455667777776666         445555665555444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.8e-31  Score=276.60  Aligned_cols=240  Identities=23%  Similarity=0.215  Sum_probs=202.9

Q ss_pred             HHhhhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH--------
Q 013471          143 LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI--------  214 (442)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll--------  214 (442)
                      +.++..+....++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+        
T Consensus       160 i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~  239 (682)
T PHA02876        160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK  239 (682)
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            334444566777788888999999999999999999999999999999999999999999998887776654        


Q ss_pred             ---------------------HcCCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCcCC--CChHHHHHHHcC-
Q 013471          215 ---------------------QKGVDINIKDKFGNTPLLEAIKCGHD-GVTSLLVKEGASLNVDD--AGSFLCTAVARG-  269 (442)
Q Consensus       215 ---------------------~~ga~~~~~~~~g~tpL~~A~~~~~~-~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g-  269 (442)
                                           +.|++++..+..|.||||+|+..++. +++++|++.|++++..+  +.||||+|+..| 
T Consensus       240 ~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~  319 (682)
T PHA02876        240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGY  319 (682)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCC
Confidence                                 45667788888999999999999986 69999999999988754  569999999999 


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHh-ChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          270 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE-GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       270 ~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      +.++++.|+..|++++.++..|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       320 ~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga  399 (682)
T PHA02876        320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA  399 (682)
T ss_pred             CHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            69999999999999999999999999999986 47899999999999999999999999999999999999999999999


Q ss_pred             Ccccccccccchh--------------------hcccCCCcceecCCCCCCccc
Q 013471          349 TQLSEFHYCSQGM--------------------IDKMHPRKCTVFPFHPWDEKV  382 (442)
Q Consensus       349 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~~~~~~  382 (442)
                      +...........+                    .+....+..+.+|+|.|+..+
T Consensus       400 d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        400 DIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             CccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence            8754332211110                    133445667888888887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.4e-31  Score=264.73  Aligned_cols=170  Identities=32%  Similarity=0.392  Sum_probs=156.5

Q ss_pred             HHHHHHHcCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013471          176 QLKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN  254 (442)
Q Consensus       176 ~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~  254 (442)
                      ++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|++.|++++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            666777788999999988 9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC--CChHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q 013471          255 VDD--AGSFLCTAVAR-GDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE  330 (442)
Q Consensus       255 ~~~--~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~  330 (442)
                      ..+  +.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|+|++.+|..|+||||+
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~  306 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS  306 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            765  56999999976 799999999999999999886 799999999  577899999999999999999999999999


Q ss_pred             HHHcC-CHHHHHHHHHcC
Q 013471          331 GRMCG-NKNLIKLLEDAE  347 (442)
Q Consensus       331 A~~~~-~~~~v~~Ll~~~  347 (442)
                      |+..+ ..+++++|+.+.
T Consensus       307 A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        307 AVKQYLCINIGRILISNI  324 (477)
T ss_pred             HHHHcCccchHHHHHHHH
Confidence            99864 567888888764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=263.36  Aligned_cols=204  Identities=18%  Similarity=0.239  Sum_probs=173.9

Q ss_pred             hhcccccccccchhhhhHHHHHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCChHHHHHHHc--CCHHHHHHHHHcCCC
Q 013471          146 LKSDITFHIGKHEAELALRVNSAAYH---GDLYQLKGLIRAGADP-NKTDYDGRSPLHLATSR--GYEDITLFLIQKGVD  219 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~  219 (442)
                      +.-+.+..++..+..|.||||.|+..   |+.+++++|+++|+++ +.+|..|.||||+|+..  ++.+++++|+++|++
T Consensus        93 ~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989         93 LLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            33345566777777889999988765   6789999999999999 78888999999998764  588999999999999


Q ss_pred             CCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCcCC--CChHHHHHHHc------CCHHHHHHHHHCCCCCCC
Q 013471          220 INI-KDKFGNTPLLEAIKCG----HDGVTSLLVKEGASLNVDD--AGSFLCTAVAR------GDSDFLKRVLSNGVDPSS  286 (442)
Q Consensus       220 ~~~-~~~~g~tpL~~A~~~~----~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~------g~~~~v~~Ll~~g~~~~~  286 (442)
                      ++. .+..|.||||.|++.+    +.+++++|+++|++++..+  +.++|+.++..      +..+++++|+. |++++.
T Consensus       173 i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~  251 (494)
T PHA02989        173 LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINK  251 (494)
T ss_pred             ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCC
Confidence            987 6788999999887764    7899999999999888766  46888876654      35677776654 699999


Q ss_pred             CCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       287 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                      +|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+++++|++.++..
T Consensus       252 ~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        252 KDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             CCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            9999999999999999999999999999999999999999999999999999999999988653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=5.2e-31  Score=259.29  Aligned_cols=239  Identities=23%  Similarity=0.294  Sum_probs=214.0

Q ss_pred             cccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-----cCCCCCC
Q 013471          148 SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-----KGVDINI  222 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~ga~~~~  222 (442)
                      -+...+++-++..+.||||.||..++.|..+.|++.|+++-..|.+|.+|+|.|+++|..++.+..+.     ++..+|.
T Consensus       141 l~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~  220 (929)
T KOG0510|consen  141 LDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINF  220 (929)
T ss_pred             HHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccc
Confidence            34557788889999999999999999998899999999999999999999999999999999999998     6788999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------CCCChHHHHHHHcCCHHHHHHHHHCCCCCC
Q 013471          223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-----------------DDAGSFLCTAVARGDSDFLKRVLSNGVDPS  285 (442)
Q Consensus       223 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~-----------------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~  285 (442)
                      -+..|.||||.|+..|+.++++..++.|.....                 .++.||||+||+.|+.++++.|+..|++++
T Consensus       221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~  300 (929)
T KOG0510|consen  221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN  300 (929)
T ss_pred             ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc
Confidence            999999999999999999999999998764322                 346799999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHhChHHHHHHHHH-CC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhc
Q 013471          286 SRDYDHRTPLHVAASEGLYLMAKLLLE-AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMID  363 (442)
Q Consensus       286 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~-~g-a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~  363 (442)
                      .++.++.||||.||..|+..+|+.|++ .| ...+..|-.|.||||+|+++||..+++.|++.||......         
T Consensus       301 ~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~---------  371 (929)
T KOG0510|consen  301 SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMS---------  371 (929)
T ss_pred             ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccc---------
Confidence            999999999999999999999999999 55 5578889999999999999999999999999999755410         


Q ss_pred             ccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhhh
Q 013471          364 KMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDK  406 (442)
Q Consensus       364 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~k  406 (442)
                        ..+..+.+++|.|+..++         +..++-|++.|++-
T Consensus       372 --e~D~dg~TaLH~Aa~~g~---------~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  372 --EADSDGNTALHLAAKYGN---------TSAVQKLISHGADI  403 (929)
T ss_pred             --ccccCCchhhhHHHHhcc---------HHHHHHHHHcCCce
Confidence              125677889999999888         88899999877653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.9e-30  Score=231.09  Aligned_cols=175  Identities=17%  Similarity=0.199  Sum_probs=157.9

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKD-KFGNTPLLEA  234 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A  234 (442)
                      .+.+.||||.|+..|+.+.|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            44567899999999999999999975   5667889999999999865  8999999999999999997 5899999998


Q ss_pred             HHc---CCHHHHHHHHHcCCCCCcCC--CChHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCcHHHH-HHHhChHHH
Q 013471          235 IKC---GHDGVTSLLVKEGASLNVDD--AGSFLCTAVA--RGDSDFLKRVLSNGVDPSSRDYDHRTPLHV-AASEGLYLM  306 (442)
Q Consensus       235 ~~~---~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~-A~~~g~~~i  306 (442)
                      +..   ++.+++++|+++|++++..+  +.||||.|+.  .++.+++++|+++|++++.+|.+|.||||. |+..++.++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            764   47999999999999999865  5699999886  468999999999999999999999999996 566789999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Q 013471          307 AKLLLEAGASVFTKDRWGNTPLDEGRMCG  335 (442)
Q Consensus       307 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  335 (442)
                      +++|+++|++++.+|..|+||+++|..++
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999999999999998765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.8e-30  Score=247.42  Aligned_cols=184  Identities=19%  Similarity=0.055  Sum_probs=169.9

Q ss_pred             HHHhcCCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013471          167 SAAYHGDLYQLKGLIRAGADPN------KTDYDGRSPLHLATS--RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  238 (442)
Q Consensus       167 ~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~  238 (442)
                      .|+..+..++++.|+++|++++      .++..++|+||+|+.  .|+.++|++|+++||+++..  .+.||+|.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            8999999999999999999988      778889999999999  89999999999999999984  4589999999999


Q ss_pred             CHHHHHHHHHcCCCCCcCC--------CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          239 HDGVTSLLVKEGASLNVDD--------AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       239 ~~~iv~~Ll~~g~~~~~~~--------~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      +.+++++|+++|++.....        +.+++|.|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999998543221        45789999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcC--------CHHHHHHHHHcCCCccc
Q 013471          311 LEAGASVFTKDRWGNTPLDEGRMCG--------NKNLIKLLEDAECTQLS  352 (442)
Q Consensus       311 l~~ga~~~~~~~~g~tpl~~A~~~~--------~~~~v~~Ll~~~a~~~~  352 (442)
                      +++|++++.+|..|+||||+|+..|        +.+++++|+++|++...
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999998        46999999999986543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.3e-30  Score=262.37  Aligned_cols=218  Identities=16%  Similarity=0.142  Sum_probs=184.3

Q ss_pred             cccccccchhhhhHHHHHHHhcC------CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCC
Q 013471          150 ITFHIGKHEAELALRVNSAAYHG------DLYQLKGLIRAGADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI  220 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~  220 (442)
                      .+..++..+ .+.||||.|+..+      ..+++++|+++|+++|.++..|.||||.|+..   |+.+++++|+++|+++
T Consensus        59 ~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadi  137 (494)
T PHA02989         59 NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINV  137 (494)
T ss_pred             cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCc
Confidence            344444433 4689999998754      47899999999999999999999999988765   6799999999999999


Q ss_pred             -CCCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCcC---CCChHHHHHHHcC----CHHHHHHHHHCCCCCCCCCCC
Q 013471          221 -NIKDKFGNTPLLEAIKC--GHDGVTSLLVKEGASLNVD---DAGSFLCTAVARG----DSDFLKRVLSNGVDPSSRDYD  290 (442)
Q Consensus       221 -~~~~~~g~tpL~~A~~~--~~~~iv~~Ll~~g~~~~~~---~~~~~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~  290 (442)
                       +.++..|.||||+|+..  ++.+++++|+++|++++..   .+.||||.|+..+    +.+++++|+++|++++.++..
T Consensus       138 n~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~  217 (494)
T PHA02989        138 NDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNG  217 (494)
T ss_pred             ccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCc
Confidence             89999999999998765  5799999999999998772   4679999998764    899999999999999999999


Q ss_pred             CCcHHHHHHHhC------hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcc
Q 013471          291 HRTPLHVAASEG------LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDK  364 (442)
Q Consensus       291 g~t~Lh~A~~~g------~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~  364 (442)
                      |.|+||.++..+      ..+++++|+. |++++.+|..|+||||+|+..|+.+++++|+++|++....           
T Consensus       218 ~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~-----------  285 (494)
T PHA02989        218 SESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNV-----------  285 (494)
T ss_pred             cccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcccc-----------
Confidence            999999877643      5678887665 6999999999999999999999999999999999965443           


Q ss_pred             cCCCcceecCCCCCCcccc
Q 013471          365 MHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       365 ~~~~~~~~~~~h~~~~~~~  383 (442)
                         +..+.+|+|.|...++
T Consensus       286 ---d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        286 ---SKDGDTVLTYAIKHGN  301 (494)
T ss_pred             ---CCCCCCHHHHHHHcCC
Confidence               3445667777766555

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.2e-30  Score=268.83  Aligned_cols=207  Identities=25%  Similarity=0.297  Sum_probs=186.4

Q ss_pred             ccccccccchhhhhHHHHHHHhcCCH-HHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCC
Q 013471          149 DITFHIGKHEAELALRVNSAAYHGDL-YQLKGLIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKF  226 (442)
Q Consensus       149 ~~~~~~~~~~~~~~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~  226 (442)
                      +.....+..+..|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+..| ..+++++|+..|++++..+..
T Consensus       261 ~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~  340 (682)
T PHA02876        261 DAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL  340 (682)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC
Confidence            34455667777899999999999986 5899999999999999999999999999999 599999999999999999999


Q ss_pred             CCcHHHHHHHc-CCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh
Q 013471          227 GNTPLLEAIKC-GHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL  303 (442)
Q Consensus       227 g~tpL~~A~~~-~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~  303 (442)
                      |.||||+|+.. ++.+++++|++.|++++..+  +.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~  420 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTN  420 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCC
Confidence            99999999986 46889999999999998865  5699999999999999999999999999999999999999997665


Q ss_pred             -HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccccc
Q 013471          304 -YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAECTQLSEFH  355 (442)
Q Consensus       304 -~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~-~~~~v~~Ll~~~a~~~~~~~  355 (442)
                       ..++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++|++......
T Consensus       421 ~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~  474 (682)
T PHA02876        421 PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI  474 (682)
T ss_pred             HHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC
Confidence             57899999999999999999999999999977 68999999999998665443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=260.81  Aligned_cols=209  Identities=21%  Similarity=0.191  Sum_probs=177.4

Q ss_pred             hhHHHH--HHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471          161 LALRVN--SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR-----GYEDITLFLIQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       161 ~~t~L~--~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  233 (442)
                      +.|+++  .+...++.+++++|+++|+++|.++..|.||||.|+.+     ++.+++++|+++|++++.++..|.||||+
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~  115 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC  115 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence            344554  33445689999999999999999999999999999864     67999999999999999999999999999


Q ss_pred             HHHcC---CHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCC---HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhC--
Q 013471          234 AIKCG---HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD---SDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEG--  302 (442)
Q Consensus       234 A~~~~---~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g--  302 (442)
                      |+..+   +.+++++|+++|++++..+  +.||||+|+..++   .+++++|+++|++++.++ ..|.||||.++..+  
T Consensus       116 a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~  195 (489)
T PHA02798        116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNID  195 (489)
T ss_pred             HHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccc
Confidence            99986   6899999999999998865  5699999999998   999999999999999885 57899999987654  


Q ss_pred             --hHHHHHHHHHCCCCC---------------------------------------CCCCCCCCCHHHHHHHcCCHHHHH
Q 013471          303 --LYLMAKLLLEAGASV---------------------------------------FTKDRWGNTPLDEGRMCGNKNLIK  341 (442)
Q Consensus       303 --~~~iv~~Ll~~ga~~---------------------------------------~~~~~~g~tpl~~A~~~~~~~~v~  341 (442)
                        +.+++++|+++|+++                                       |.+|..|+||||+|+..|+.++++
T Consensus       196 ~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~  275 (489)
T PHA02798        196 RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFE  275 (489)
T ss_pred             cCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHH
Confidence              789999999887654                                       446778999999999999999999


Q ss_pred             HHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          342 LLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       342 ~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +|+++||+....              +..+.+|+|.|...++
T Consensus       276 ~LL~~GAdin~~--------------d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        276 YLLQLGGDINII--------------TELGNTCLFTAFENES  303 (489)
T ss_pred             HHHHcCCccccc--------------CCCCCcHHHHHHHcCc
Confidence            999999975443              2344556666554443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=241.88  Aligned_cols=192  Identities=26%  Similarity=0.389  Sum_probs=175.3

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCC--------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKT--------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG  227 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--------~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  227 (442)
                      ....|.|||..||++|+.++|++|+++ ++++...        .-.|-+||..|+..||.++||.|+++|+++|......
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN  117 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN  117 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccC
Confidence            445577999999999999999999994 6666433        3468899999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHH
Q 013471          228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL  305 (442)
Q Consensus       228 ~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~  305 (442)
                      .|||..||.-|+.+++++|+++|+|++..+  +.|.||.||.+|+.+++++|++.|+|+|.++..|+|+||.|++.|+.+
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd  197 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD  197 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence            999999999999999999999999998865  569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          306 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       306 iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      ++++|+.+|+.+.. |..|.|||..|+..|+.++|++|++...+
T Consensus       198 ivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~~~s  240 (615)
T KOG0508|consen  198 IVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQCETS  240 (615)
T ss_pred             HHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcCCcc
Confidence            99999999998765 55699999999999999999999974443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.8e-28  Score=251.27  Aligned_cols=194  Identities=19%  Similarity=0.133  Sum_probs=165.9

Q ss_pred             cccchhhhhHHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCC
Q 013471          154 IGKHEAELALRVNSAAYH---GDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED----ITLFLIQKGVDINIKDKF  226 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~  226 (442)
                      .+..+..|.||||+|+..   |+.+++++|+++|++++..+..|.||||+|+..|+.+    +++.|++.+...+..+  
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--  102 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--  102 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--
Confidence            356677899999997555   8899999999999999999999999999999999854    5678888754445433  


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHH--HcCCHHHHHHHHHCCCCCCCCCC---CC--------
Q 013471          227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAV--ARGDSDFLKRVLSNGVDPSSRDY---DH--------  291 (442)
Q Consensus       227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~---~g--------  291 (442)
                      ..+++++|+..++.+++++|+++|++++..+  +.||||.|+  ..|+.+++++|+++|++++.+|.   .|        
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence            2377888999999999999999999999854  679999654  57899999999999999986653   34        


Q ss_pred             ---CcHHHHHHH-----------hChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCc
Q 013471          292 ---RTPLHVAAS-----------EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK--NLIKLLEDAECTQ  350 (442)
Q Consensus       292 ---~t~Lh~A~~-----------~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~--~~v~~Ll~~~a~~  350 (442)
                         .||||+|+.           .++.++|++|+++|++++.+|..|+||||+|+.+|+.  ++|++|++ |++.
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence               599999986           4689999999999999999999999999999999985  79999986 7644

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=4.5e-29  Score=231.82  Aligned_cols=202  Identities=27%  Similarity=0.328  Sum_probs=175.9

Q ss_pred             HHHhcCCHHHHHHHHHcCCCC-----CCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC--------CCCCcHHH
Q 013471          167 SAAYHGDLYQLKGLIRAGADP-----NKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKD--------KFGNTPLL  232 (442)
Q Consensus       167 ~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~--------~~g~tpL~  232 (442)
                      .|++.|++..++.|+.+..+.     -....+|.|||.+||++||.++|++|++ .++++....        -.|.+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            688888888888887654321     1234568899999999999999999999 488876542        46889999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          233 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       233 ~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      .|+..||.++|+.|+++|+++|...  +.|||-.||.-|+.+++++|+++|+|++..|+.|.|.||+||.+|+.+|+++|
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence            9999999999999999999999754  34999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       311 l~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      ++.|+|+|.++..|+|+||.|+..|+.+++++|+++|+....               +.-+.+|+-.|+..++
T Consensus       170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~---------------d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV---------------DGHGMTPLLLAAVTGH  227 (615)
T ss_pred             HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee---------------cCCCCchHHHHhhhcc
Confidence            999999999999999999999999999999999999985332               2336677777777777

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1e-27  Score=247.15  Aligned_cols=196  Identities=20%  Similarity=0.228  Sum_probs=168.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHH
Q 013471          174 LYQLKGLIRAGADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD----GVTSLL  246 (442)
Q Consensus       174 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~----~iv~~L  246 (442)
                      ++.++.|+..|..++..|..|.||||+|+..   |+.++|++|+++|++++.++..|.||||+|+..|+.    ++++.|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            5678899999998998899999999998665   789999999999999999999999999999999984    466888


Q ss_pred             HHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HhChHHHHHHHHHCCCCCCCCCC--
Q 013471          247 VKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA--SEGLYLMAKLLLEAGASVFTKDR--  322 (442)
Q Consensus       247 l~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~ga~~~~~~~--  322 (442)
                      ++.+...+..+..++++.|+.+++.+++++|+++|++++.+|.+|+||||.|+  ..|+.+++++|+++|++++.+|.  
T Consensus        92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917         92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence            88765556666667888999999999999999999999999999999999654  57899999999999999987654  


Q ss_pred             -CC-----------CCHHHHHHH-----------cCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCC
Q 013471          323 -WG-----------NTPLDEGRM-----------CGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD  379 (442)
Q Consensus       323 -~g-----------~tpl~~A~~-----------~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  379 (442)
                       .|           .||||+|+.           .++.+++++|+++|++..              ..+..+.+|+|.+.
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn--------------~~d~~G~TpLh~A~  237 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS--------------SIDKNYCTALQYYI  237 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc--------------cCCCCCCcHHHHHH
Confidence             34           599999986           468999999999999643              33456677888888


Q ss_pred             cccc
Q 013471          380 EKVH  383 (442)
Q Consensus       380 ~~~~  383 (442)
                      ..++
T Consensus       238 ~~g~  241 (661)
T PHA02917        238 KSSH  241 (661)
T ss_pred             HcCC
Confidence            7776

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.5e-27  Score=210.46  Aligned_cols=159  Identities=19%  Similarity=0.215  Sum_probs=142.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC---CChHHHHH
Q 013471          191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD---AGSFLCTA  265 (442)
Q Consensus       191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~--~~~iv~~Ll~~g~~~~~~~---~~~~L~~A  265 (442)
                      .+.+.||||+|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++..+   +.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            35679999999999999999999986   4667889999999999865  8999999999999999763   56999998


Q ss_pred             HHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--hChHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHcCCHHH
Q 013471          266 VAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPLDE-GRMCGNKNL  339 (442)
Q Consensus       266 ~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~-A~~~~~~~~  339 (442)
                      +..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            764   47999999999999999999999999999986  468999999999999999999999999995 567889999


Q ss_pred             HHHHHHcCCCccc
Q 013471          340 IKLLEDAECTQLS  352 (442)
Q Consensus       340 v~~Ll~~~a~~~~  352 (442)
                      +++|+++|++...
T Consensus       175 v~~Ll~~Gadi~~  187 (209)
T PHA02859        175 FDFLTSLGIDINE  187 (209)
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999986443

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=3.3e-28  Score=245.27  Aligned_cols=74  Identities=46%  Similarity=0.688  Sum_probs=68.8

Q ss_pred             CEeeeccC----------CCCChhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhhhhhhhhhhcCcH
Q 013471            1 MEFAFFRG----------LPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPW   70 (442)
Q Consensus         1 ~~~~f~~~----------~~~~~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~~~~~d~~~~~p~   70 (442)
                      |+++|+..          ...+|.++|.++|++|++||++||||||+++.++++|.||++||+||+++||++|+++++|+
T Consensus        97 ~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~  176 (727)
T KOG0498|consen   97 LFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPF  176 (727)
T ss_pred             ceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcCh
Confidence            56778765          55779999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 013471           71 DVIY   74 (442)
Q Consensus        71 ~~~~   74 (442)
                      +.++
T Consensus       177 ~~i~  180 (727)
T KOG0498|consen  177 DQIV  180 (727)
T ss_pred             hhhe
Confidence            9883

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.2e-27  Score=236.19  Aligned_cols=190  Identities=14%  Similarity=0.130  Sum_probs=164.1

Q ss_pred             cchhhhhHHHHHHHhcC---CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCC--CCCCCCCCCC
Q 013471          156 KHEAELALRVNSAAYHG---DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGV--DINIKDKFGN  228 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga--~~~~~~~~g~  228 (442)
                      ..+..|.||||+|+..|   +.+++++|+++||+++.+|..|.||||+|+..+  +.++|++|+++|+  +++..+..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            55667999999999997   599999999999999999999999999999977  7999999999965  4577788899


Q ss_pred             cHHHHHHH--cCCHHHHHHHHH-cCCCCCcC-------CCChHHHHHHHcCCHHHHHHHHHCCCCCC-------CCCCCC
Q 013471          229 TPLLEAIK--CGHDGVTSLLVK-EGASLNVD-------DAGSFLCTAVARGDSDFLKRVLSNGVDPS-------SRDYDH  291 (442)
Q Consensus       229 tpL~~A~~--~~~~~iv~~Ll~-~g~~~~~~-------~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-------~~~~~g  291 (442)
                      +|||.++.  +++.+++++|+. .+++++..       .+.+|++.+...++.++|++|+++|++++       ..+..+
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence            99999998  888999999997 66776654       34689999999999999999999999995       133334


Q ss_pred             C-cHHHHHH------HhChHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHH
Q 013471          292 R-TPLHVAA------SEGLYLMAKLLLEAGASVFTKDRWGNTPLDE--GRMCGNKNLIKLLED  345 (442)
Q Consensus       292 ~-t~Lh~A~------~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~--A~~~~~~~~v~~Ll~  345 (442)
                      . |.||++.      ..++.|++++|+++||++|.+|..|+||||+  |...|+.|++++|++
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            4 5566443      4578999999999999999999999999995  556678999999999

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=3.3e-28  Score=253.74  Aligned_cols=198  Identities=33%  Similarity=0.404  Sum_probs=114.5

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      .+.....|.||||.|+..++..+++.++++|++++..+..|.||+|.|+..| ..+.+..+++.|++++.....|.||||
T Consensus       400 ~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lh  479 (1143)
T KOG4177|consen  400 PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLH  479 (1143)
T ss_pred             cccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchh
Confidence            4445555556666666666666666666666666666666666666666666 566666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCc--CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          233 EAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       233 ~A~~~~~~~iv~~Ll~~g~~~~~--~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      .|+..|+.++++.|++.++..+.  ..+-+++|.|...+...+++.++++|++++.++..|.||||.||..|+.++|++|
T Consensus       480 laaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  480 LAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFL  559 (1143)
T ss_pred             hhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHh
Confidence            66666666666666665533322  2222445555555555555555555555555555555555555555555555555


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       311 l~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      +++|+|++.+++.|+||||.|+..|+.+++.+|+++||++.
T Consensus       560 Le~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  560 LEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             hhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC
Confidence            55555555555555555555555555555555555555433

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.4e-26  Score=229.04  Aligned_cols=212  Identities=17%  Similarity=0.091  Sum_probs=168.7

Q ss_pred             HHHhhhcccccccccchhhhhHHHHHHHh-cCCHHHHHHHHHcCCCCC--------------------------------
Q 013471          142 RLKQLKSDITFHIGKHEAELALRVNSAAY-HGDLYQLKGLIRAGADPN--------------------------------  188 (442)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~t~L~~A~~-~g~~~~v~~Ll~~g~~~~--------------------------------  188 (442)
                      .+..+.-..+..++..+..+.+++++|+. .|+.+++++|+++|++++                                
T Consensus        86 Elvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (631)
T PHA02792         86 ELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYD  165 (631)
T ss_pred             HHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccc
Confidence            33333344566666666677888898866 589999999999988632                                


Q ss_pred             ----CCCCCCChHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHH------------
Q 013471          189 ----KTDYDGRSPLHLATSRG-------YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVT------------  243 (442)
Q Consensus       189 ----~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~--~~~iv------------  243 (442)
                          ..|..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+.+.  ..|++            
T Consensus       166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence                23455889999999988       789999999999999999989999999998776  34444            


Q ss_pred             -------------------------------------------------------------------------------H
Q 013471          244 -------------------------------------------------------------------------------S  244 (442)
Q Consensus       244 -------------------------------------------------------------------------------~  244 (442)
                                                                                                     +
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                           4


Q ss_pred             HHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CcHHHHHHHhChH---HHHHHHHHCCCCCCC
Q 013471          245 LLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH--RTPLHVAASEGLY---LMAKLLLEAGASVFT  319 (442)
Q Consensus       245 ~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~Lh~A~~~g~~---~iv~~Ll~~ga~~~~  319 (442)
                      +|+++|++.........++.|+..|+.+++++|+++|++++.+|.+|  .||||.|+..+..   +++++|+++||++|.
T Consensus       326 ~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~  405 (631)
T PHA02792        326 CMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINK  405 (631)
T ss_pred             HHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccc
Confidence            44445554432223345788999999999999999999999998775  6999998776654   468999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          320 KDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       320 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      +|..|+||||+|+..++.+++++|+++|++....
T Consensus       406 kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        406 IDKHGRSILYYCIESHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            9999999999999999999999999999975543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=7.6e-27  Score=243.65  Aligned_cols=201  Identities=32%  Similarity=0.390  Sum_probs=191.4

Q ss_pred             cccccccchhhhhHHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 013471          150 ITFHIGKHEAELALRVNSAAYHG-DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN  228 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  228 (442)
                      .....+..+..|.|++|.|+..| ..+....+++.|.++|.....|.||||.|+..|+.++++.|++.++..+...+.+.
T Consensus       429 ~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l  508 (1143)
T KOG4177|consen  429 RGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGL  508 (1143)
T ss_pred             cCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhcc
Confidence            44556667778899999999999 88999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHH
Q 013471          229 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM  306 (442)
Q Consensus       229 tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~--~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~i  306 (442)
                      +++|.|...+...+++.++++|++++...++  ||||.|+.+|+.++|++|+++|++++.++..|+||||.||..|+.++
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHH
Confidence            9999999999999999999999999887654  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          307 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       307 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                      +.+|+++|+++|..+.+|.|||++|+..|+.++++.|+..++..
T Consensus       589 ~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  589 AELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             HHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            99999999999999999999999999999999999999999883

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=7.9e-27  Score=196.70  Aligned_cols=189  Identities=26%  Similarity=0.301  Sum_probs=175.4

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  236 (442)
                      .+.+|...++.|+-+|+...+..++.+|+..|..+..+++|+.+++...+++.+..+.++  .+|..|+.|.|||.||+.
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa  169 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAA  169 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHh
Confidence            344589999999999999999999999999999999999999999999999988887765  578899999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  314 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g  314 (442)
                      .|+.++|++|++.|++++.-.  ..++|.+|++.|..++|++|+.++.|+|.-|.+|-|||-+|++.|+.+||+.|++.|
T Consensus       170 ~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG  249 (296)
T KOG0502|consen  170 KGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSG  249 (296)
T ss_pred             cCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcC
Confidence            999999999999999998844  458999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       315 a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      |+++..+..|+++++.|+..|+. +|+..++.-+
T Consensus       250 Ad~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  250 ADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA  282 (296)
T ss_pred             CCcccccccCCcHHHHHHHhhhH-HHHHHHHHHH
Confidence            99999999999999999999998 7777666554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=9.3e-26  Score=227.19  Aligned_cols=210  Identities=20%  Similarity=0.133  Sum_probs=176.5

Q ss_pred             hHHHHhhhcccccccccchhhhhHHHHH--HHhcCCHHHHHHHHH--------------------------------cCC
Q 013471          140 NLRLKQLKSDITFHIGKHEAELALRVNS--AAYHGDLYQLKGLIR--------------------------------AGA  185 (442)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~--A~~~g~~~~v~~Ll~--------------------------------~g~  185 (442)
                      .....++.-..+..++..+..|.||||+  |...|+.+++++|++                                +|+
T Consensus       214 ~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (672)
T PHA02730        214 SKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNV  293 (672)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCc
Confidence            4455555566778889999999999995  556678999999999                                677


Q ss_pred             CCCC--------------------CCCCCCh---------------------HHHHHHHcC---CHHHHHHHHHcCCCCC
Q 013471          186 DPNK--------------------TDYDGRS---------------------PLHLATSRG---YEDITLFLIQKGVDIN  221 (442)
Q Consensus       186 ~~~~--------------------~~~~g~t---------------------~L~~A~~~g---~~~~v~~Ll~~ga~~~  221 (442)
                      |...                    .+..|.+                     .||.-...+   +.+++++|+++||+++
T Consensus       294 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN  373 (672)
T PHA02730        294 DMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMD  373 (672)
T ss_pred             chHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCC
Confidence            7654                    4555654                     677777766   6899999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCC----HHHHHHHHHcCC--CCCcC--CCChHHHH---HHHcC---------CHHHHHHHHHCC
Q 013471          222 IKDKFGNTPLLEAIKCGH----DGVTSLLVKEGA--SLNVD--DAGSFLCT---AVARG---------DSDFLKRVLSNG  281 (442)
Q Consensus       222 ~~~~~g~tpL~~A~~~~~----~~iv~~Ll~~g~--~~~~~--~~~~~L~~---A~~~g---------~~~~v~~Ll~~g  281 (442)
                      .. ..|.||||+|+..++    .+++++|+++|+  +++..  .+.||||.   |...+         ..+++++|+++|
T Consensus       374 ~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G  452 (672)
T PHA02730        374 KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM  452 (672)
T ss_pred             cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc
Confidence            85 799999999998875    899999999998  46654  35699984   33232         235799999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHc--CCHHHHHHHHHcCCCc
Q 013471          282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEGRMC--GNKNLIKLLEDAECTQ  350 (442)
Q Consensus       282 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~tpl~~A~~~--~~~~~v~~Ll~~~a~~  350 (442)
                      ++++.+|..|+||||+|+..++.+++++|+++||+++.++. .|.||+|.|+..  ++.+++++|+++|+..
T Consensus       453 ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        453 DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999999997 599999999974  7999999999999965

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=221.29  Aligned_cols=188  Identities=13%  Similarity=0.047  Sum_probs=167.6

Q ss_pred             HHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHH
Q 013471          177 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN------IKDKFGNTPLLEAIK--CGHDGVTSLLVK  248 (442)
Q Consensus       177 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~tpL~~A~~--~~~~~iv~~Ll~  248 (442)
                      -++++++|+++|....+|     +|+..+..+++++|+.+|++++      .++..++|+||.|+.  .|+.+++++|++
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~  139 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD  139 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH
Confidence            468999999999887777     9999999999999999999998      788899999999999  899999999999


Q ss_pred             cCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC
Q 013471          249 EGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD------YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  322 (442)
Q Consensus       249 ~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~  322 (442)
                      +|++++..++.||+|.|+..++.+++++|+++|++.+...      ..|.|++|.|+..++.+++++|+++|+++|.+|.
T Consensus       140 ~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~  219 (437)
T PHA02795        140 HGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA  219 (437)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC
Confidence            9999999888999999999999999999999998543222      3478999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          323 WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       323 ~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      .|+||||+|+..|+.+++++|+++|++....              ...+.+|+|.|+..+.
T Consensus       220 ~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~--------------d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        220 GGRTLLYRAIYAGYIDLVSWLLENGANVNAV--------------MSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--------------CCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999965433              3455667777766553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=8.2e-25  Score=232.40  Aligned_cols=224  Identities=19%  Similarity=0.133  Sum_probs=182.7

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHc--CCCCCCCCCCCChHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRA--GADPNKTDYDGRSPLH-LATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  236 (442)
                      .+..+++.|+..|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            456789999999999999999999  8999999999999999 8999999999999999987    67889999999997


Q ss_pred             cCC---HHHHHHHHHcCCCC------------CcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------
Q 013471          237 CGH---DGVTSLLVKEGASL------------NVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-------------  288 (442)
Q Consensus       237 ~~~---~~iv~~Ll~~g~~~------------~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------  288 (442)
                      .+.   ..++..+...+.+.            ....+.||||.|+.+|+.+++++|+++|++++.++             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            322   34455555544321            11346799999999999999999999999998653             


Q ss_pred             -CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC---------CHHHHHHHHHcCCCccccccccc
Q 013471          289 -YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG---------NKNLIKLLEDAECTQLSEFHYCS  358 (442)
Q Consensus       289 -~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~---------~~~~v~~Ll~~~a~~~~~~~~~~  358 (442)
                       ..|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+++++.++.......   
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e---  248 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE---  248 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh---
Confidence             35899999999999999999999999999999999999999999987         34566778777765322110   


Q ss_pred             chhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHH
Q 013471          359 QGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLA  403 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~  403 (442)
                          -....+..+.+|+|.|+..++         ++.++.++.+.
T Consensus       249 ----l~~i~N~~g~TPL~~A~~~g~---------~~l~~lLL~~~  280 (743)
T TIGR00870       249 ----LEVILNHQGLTPLKLAAKEGR---------IVLFRLKLAIK  280 (743)
T ss_pred             ----hhhhcCCCCCCchhhhhhcCC---------ccHHHHHHHHH
Confidence                112345667789999998888         77788888764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=5.4e-24  Score=227.49  Aligned_cols=163  Identities=21%  Similarity=0.204  Sum_probs=151.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHc
Q 013471          191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR  268 (442)
Q Consensus       191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~  268 (442)
                      +..+.++||.||..|+.++++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+  +.||||.|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            4457899999999999999999999999999999999999999999999999999999999998864  67999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       269 g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      |+.+++++|++.++..+.  ..|.++||.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            999999999998876543  467899999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccccccc
Q 013471          349 TQLSEFH  355 (442)
Q Consensus       349 ~~~~~~~  355 (442)
                      +......
T Consensus       680 dv~~~~~  686 (823)
T PLN03192        680 DVDKANT  686 (823)
T ss_pred             CCCCCCC
Confidence            8765543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.4e-24  Score=212.93  Aligned_cols=199  Identities=14%  Similarity=0.082  Sum_probs=167.5

Q ss_pred             cccccchhhhhHHHHHHHhcC-------CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCC---C
Q 013471          152 FHIGKHEAELALRVNSAAYHG-------DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGV---D  219 (442)
Q Consensus       152 ~~~~~~~~~~~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga---~  219 (442)
                      ..++..+..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+.+.  +.|++++|++..-   +
T Consensus       166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence            344566777999999999999       899999999999999999999999999999998  7788887765311   0


Q ss_pred             -------------------C------------------------------------------------------------
Q 013471          220 -------------------I------------------------------------------------------------  220 (442)
Q Consensus       220 -------------------~------------------------------------------------------------  220 (442)
                                         +                                                            
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                               0                                                            


Q ss_pred             -------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----ChHHHHHHHcCCH---HHHHHHHHCCCCCCC
Q 013471          221 -------NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA----GSFLCTAVARGDS---DFLKRVLSNGVDPSS  286 (442)
Q Consensus       221 -------~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~----~~~L~~A~~~g~~---~~v~~Ll~~g~~~~~  286 (442)
                             +........+++.|+..|+.+++++|+++|++++..+.    .||||.|+.....   +++++|+++|+++|.
T Consensus       326 ~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~  405 (631)
T PHA02792        326 CMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINK  405 (631)
T ss_pred             HHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccc
Confidence                   00001234568899999999999999999999988663    3899988777665   468999999999999


Q ss_pred             CCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--c--------CCHHHHHHHHHcCCCc
Q 013471          287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM--C--------GNKNLIKLLEDAECTQ  350 (442)
Q Consensus       287 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~--~--------~~~~~v~~Ll~~~a~~  350 (442)
                      +|..|+||||+|+..++.+++++|+++|++++.+|..|+||+++|+.  .        ...++++.|+++|+..
T Consensus       406 kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        406 IDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            99999999999999999999999999999999999999999999976  2        2356799999999765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=3.4e-24  Score=227.64  Aligned_cols=195  Identities=21%  Similarity=0.129  Sum_probs=161.1

Q ss_pred             ccccccchhhhhHHHH-HHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC---CHHHHHHHHHcCCC------C
Q 013471          151 TFHIGKHEAELALRVN-SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG---YEDITLFLIQKGVD------I  220 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~ga~------~  220 (442)
                      ...++..+..|.|||| .|+..++.++++.|++.|+    .+..|.||||.|+..+   ...+++.+...+.+      .
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            4566677788999999 8889999999999999987    5678999999999732   23344444444422      1


Q ss_pred             C----CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC----------------CCChHHHHHHHcCCHHHHHHHHHC
Q 013471          221 N----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----------------DAGSFLCTAVARGDSDFLKRVLSN  280 (442)
Q Consensus       221 ~----~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~----------------~~~~~L~~A~~~g~~~~v~~Ll~~  280 (442)
                      +    .....|.||||+|+..|+.+++++|+++|++++..                .+.+|||.|+..|+.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence            1    12357999999999999999999999999999864                356899999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhC---------hHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 013471          281 GVDPSSRDYDHRTPLHVAASEG---------LYLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE  344 (442)
Q Consensus       281 g~~~~~~~~~g~t~Lh~A~~~g---------~~~iv~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~v~~Ll  344 (442)
                      |++++.+|..|+||||+|+..+         ...+.+++++.++..       +..|.+|.||||+|+..|+.+++++|+
T Consensus       198 gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       198 PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence            9999999999999999999987         334666777665543       677999999999999999999999999


Q ss_pred             HcCCC
Q 013471          345 DAECT  349 (442)
Q Consensus       345 ~~~a~  349 (442)
                      +.+..
T Consensus       278 ~~~~~  282 (743)
T TIGR00870       278 AIKYK  282 (743)
T ss_pred             HHHHh
Confidence            96644

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-24  Score=194.84  Aligned_cols=161  Identities=29%  Similarity=0.383  Sum_probs=147.3

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcC-----CHHHHHHHHHcCCCCCc---CC
Q 013471          187 PNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCG-----HDGVTSLLVKEGASLNV---DD  257 (442)
Q Consensus       187 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~-----~~~iv~~Ll~~g~~~~~---~~  257 (442)
                      +|..|.+|+|+||||+.++++++|+.||+.| ++++.+++.|+||+++|+...     +.++|..|...| ++|.   +.
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            5778999999999999999999999999985 799999999999999988653     477888888876 4554   45


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCC
Q 013471          258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGN  336 (442)
Q Consensus       258 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~  336 (442)
                      +.|+|++|+.+|+.++|+.||..|+|+|.+|.+|.|+|++||+.||.|++++||.. ++|+...|.+|-|+|.+|...||
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            77999999999999999999999999999999999999999999999999999986 69999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 013471          337 KNLIKLLEDAEC  348 (442)
Q Consensus       337 ~~~v~~Ll~~~a  348 (442)
                      .++.-+|-.+..
T Consensus       420 ~eIa~mlYa~~n  431 (452)
T KOG0514|consen  420 REIAVMLYAHMN  431 (452)
T ss_pred             hHHHHHHHHHHH
Confidence            999999877554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=9.5e-24  Score=200.32  Aligned_cols=190  Identities=33%  Similarity=0.434  Sum_probs=162.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 013471          164 RVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  243 (442)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv  243 (442)
                      .+..|+..|+.+-+..|+..|++++..+.+|.|+||.||.-.+.+||++|+++|+++|..|..|+||||.|+..|+..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcCCC--ChH------------HHHHHHcCC--H------------HHHHHHHHCCCCCCCCCCCCCcHH
Q 013471          244 SLLVKEGASLNVDDA--GSF------------LCTAVARGD--S------------DFLKRVLSNGVDPSSRDYDHRTPL  295 (442)
Q Consensus       244 ~~Ll~~g~~~~~~~~--~~~------------L~~A~~~g~--~------------~~v~~Ll~~g~~~~~~~~~g~t~L  295 (442)
                      ++|+++|+++-..+.  +.|            +..+.....  +            +-+...+..|...+..+..|.|+|
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l  202 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL  202 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence            999999987654321  111            111111111  1            112233347888888888899999


Q ss_pred             HHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          296 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       296 h~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      |+|+.+|+.++.++|+++|.+++.+|.+||||||.|+..|+.+++++|+++|++....
T Consensus       203 HvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  203 HVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             HHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchh
Confidence            9999999999999999999999999999999999999999999999999999975443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=3.4e-23  Score=178.51  Aligned_cols=142  Identities=19%  Similarity=0.223  Sum_probs=94.2

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCCc
Q 013471          183 AGADPNKTDYDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV---TSLLVKEGASLNV  255 (442)
Q Consensus       183 ~g~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i---v~~Ll~~g~~~~~  255 (442)
                      +|++++..+..+.++||.||+.|+.    +++++|.+.|++++.+|..|.||||+|+..|+.+.   +++|++.|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4566666777778888888888887    55666777788888888888888888888777543   5666666666554


Q ss_pred             CC---CChHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCC
Q 013471          256 DD---AGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG  324 (442)
Q Consensus       256 ~~---~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g  324 (442)
                      .+   +.||||+|+..|+.+++++|++ .|++++.++..|+||||+|+..++.+++++|+++|++++.++..|
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            32   3355555555555555555553 456666666666666666666666666666666666666665554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-23  Score=204.94  Aligned_cols=204  Identities=24%  Similarity=0.254  Sum_probs=157.3

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  233 (442)
                      .+..+..|.|.||.|+.+|+.+++++|++..+-++..+..|.+|||+|++.|+.+++++|+.++..+|..+..|.||||.
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHL  121 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccch
Confidence            34445567788888888888888888888877777777888888888888888888888888887788888888888888


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCC--ChHHHHHHHcCCHHHHHHHHHCCCC--------CCCCCCCCCcHHHHHHHhCh
Q 013471          234 AIKCGHDGVTSLLVKEGASLNVDDA--GSFLCTAVARGDSDFLKRVLSNGVD--------PSSRDYDHRTPLHVAASEGL  303 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~~~~~--~~~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~Lh~A~~~g~  303 (442)
                      |+..|+.+++.+|+.+|+++...+.  .|++-.|++.|..++++.|++....        ...++..+-+|||.|+++|+
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            8888888888888888887766543  4788888888888888888875322        12345567778888888888


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccc
Q 013471          304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCS  358 (442)
Q Consensus       304 ~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~  358 (442)
                      .++++.|+++|.|+|.....| |+||.|+.+|..++|+.|++.|.....+..++.
T Consensus       202 ~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~q  255 (854)
T KOG0507|consen  202 VECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQ  255 (854)
T ss_pred             HHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccch
Confidence            888888888888888776665 788888888888888888887776555544443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.6e-23  Score=176.83  Aligned_cols=189  Identities=22%  Similarity=0.188  Sum_probs=173.6

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 013471          165 VNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  243 (442)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv  243 (442)
                      +-.|...|+.+.++.++.-.++ +...+.+|+.+++.|+-.|+...++.++.+|+..|..+..+++|+.+++...+.+.+
T Consensus        66 ~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~  145 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVV  145 (296)
T ss_pred             cchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHH
Confidence            5567788888888888776555 456677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCC
Q 013471          244 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW  323 (442)
Q Consensus       244 ~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~  323 (442)
                      ..+.++..+-....+-|||.||+++|+.++|++|++.|++++.......|+|.+|+..|..++|++|++++.|+|.-|.+
T Consensus       146 ~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN  225 (296)
T KOG0502|consen  146 DLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN  225 (296)
T ss_pred             HHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC
Confidence            99988877666667789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          324 GNTPLDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       324 g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      |.|||-+|++.+|.++++.|++.||+....
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e  255 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLLNSGADVTQE  255 (296)
T ss_pred             CCceeeeeecCChHHHHHHHHhcCCCcccc
Confidence            999999999999999999999999976544

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.7e-22  Score=174.92  Aligned_cols=135  Identities=17%  Similarity=0.234  Sum_probs=114.1

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChH
Q 013471          188 NKTDYDGRSPLHLATSRGYEDITLFLIQ------KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF  261 (442)
Q Consensus       188 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~  261 (442)
                      +.++..|.||||+|++.|+.++++.|+.      .|++++.+|..|.||||+|+..|+.+++                  
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~------------------   76 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA------------------   76 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH------------------
Confidence            4567789999999999999999998854      3688888899999999999888875332                  


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 013471          262 LCTAVARGDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNL  339 (442)
Q Consensus       262 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~  339 (442)
                               .+++++|++.|++++.++. .|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.++
T Consensus        77 ---------~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~i  147 (169)
T PHA02741         77 ---------AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAM  147 (169)
T ss_pred             ---------HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHH
Confidence                     2455666677777788875 89999999999999999999998 599999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 013471          340 IKLLEDAECT  349 (442)
Q Consensus       340 v~~Ll~~~a~  349 (442)
                      +++|++.++.
T Consensus       148 v~~L~~~~~~  157 (169)
T PHA02741        148 MQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1e-21  Score=182.36  Aligned_cols=152  Identities=23%  Similarity=0.229  Sum_probs=122.2

Q ss_pred             CCCCCCCh-HHHHHHHcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC---CCCh
Q 013471          189 KTDYDGRS-PLHLATSRGYEDITLFLIQKGVDINIKD----KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGS  260 (442)
Q Consensus       189 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~----~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~---~~~~  260 (442)
                      .+|..|.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++..   .+.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            34555655 5566666678888888888888888763    57888888888888888888888888888863   2568


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 013471          261 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  340 (442)
Q Consensus       261 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v  340 (442)
                      |||.|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++..+..  ..   .+..+.+|.+++   ++.+++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD--NE---ISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--Cc---ccccccChhhhh---ccHHHH
Confidence            8888888888899999999999999999999999999999999888766653  22   356678888875   478999


Q ss_pred             HHHHHcCC
Q 013471          341 KLLEDAEC  348 (442)
Q Consensus       341 ~~Ll~~~a  348 (442)
                      ++|++++.
T Consensus       179 ~~Lish~v  186 (300)
T PHA02884        179 KILVSHFI  186 (300)
T ss_pred             HHHHHHHH
Confidence            99999887

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-22  Score=192.95  Aligned_cols=183  Identities=30%  Similarity=0.371  Sum_probs=157.5

Q ss_pred             cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471          152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  231 (442)
Q Consensus       152 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL  231 (442)
                      ...+..+..|.|+||.|+...+.+||++|+++|+++|..|..|+||||.|+..|+..++++|+++|+++...+.+|..|+
T Consensus        64 a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~  143 (527)
T KOG0505|consen   64 ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPY  143 (527)
T ss_pred             CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcc
Confidence            33466777899999999999999999999999999999999999999999999999999999999999888887777765


Q ss_pred             HHHHHcCCHH--------------------------HHHHHHHcCCCCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCC
Q 013471          232 LEAIKCGHDG--------------------------VTSLLVKEGASLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVD  283 (442)
Q Consensus       232 ~~A~~~~~~~--------------------------iv~~Ll~~g~~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~  283 (442)
                      ..+...-..+                          =++..+..|...+..  .+.|.||.|+.+|..++.++|++.|.+
T Consensus       144 dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  144 DLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             ccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC
Confidence            5443221111                          123333466655543  366999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Q 013471          284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC  334 (442)
Q Consensus       284 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~  334 (442)
                      ++.+|.+||||||.|+..|..+++++|+++|++++..+..|.||+++|...
T Consensus       224 ~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  224 VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            999999999999999999999999999999999999999999999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=168.09  Aligned_cols=139  Identities=15%  Similarity=0.165  Sum_probs=124.6

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCcC--CCChHHHHHHHcCCHHH---HHHHHHCCCCCCC
Q 013471          216 KGVDINIKDKFGNTPLLEAIKCGHD----GVTSLLVKEGASLNVD--DAGSFLCTAVARGDSDF---LKRVLSNGVDPSS  286 (442)
Q Consensus       216 ~ga~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~g~~~~~~--~~~~~L~~A~~~g~~~~---v~~Ll~~g~~~~~  286 (442)
                      +|++++..+..+.+++|.|++.|+.    +++++|.+.|..++..  .++||||+|+..|+.+.   +++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            5778888888999999999999997    6677888888887764  46799999999988654   8999999999999


Q ss_pred             CC-CCCCcHHHHHHHhChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 013471          287 RD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF  354 (442)
Q Consensus       287 ~~-~~g~t~Lh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~  354 (442)
                      ++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.+++++|+++|++...+.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  158 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPL  158 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            98 589999999999999999999995 899999999999999999999999999999999999766553

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=99.87  E-value=3.4e-22  Score=140.43  Aligned_cols=69  Identities=45%  Similarity=0.937  Sum_probs=63.9

Q ss_pred             CCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhhhcCCCCCCcccccCCceeeEeeeeecCCeEEEe
Q 013471          367 PRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLI  438 (442)
Q Consensus       367 ~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~k~~~~~~~~~~~~~~~~i~~i~~ird~d~~~~~  438 (442)
                      +.|+++++.|++.. +. ..|+++++|+|++||+++|++|||+. +++++++||||||||+|||||||||++
T Consensus         1 ~~RVtI~~~~~~~~-~~-~~GKvi~lP~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~IRDgD~L~~~   69 (69)
T PF11834_consen    1 PKRVTIFPNHPPEK-GR-RAGKVIWLPDSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVIRDGDHLYLV   69 (69)
T ss_pred             CcEEEEecCCCCcc-cC-cCCEEEEcCccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence            46899999999887 33 56999999999999999999999996 899999999999999999999999985

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=4.4e-22  Score=195.31  Aligned_cols=196  Identities=24%  Similarity=0.291  Sum_probs=171.1

Q ss_pred             ccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 013471          149 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  228 (442)
                      +....+.-.+..|.+|||+|+..|+.++++.++.++..+|..+..|.||||.|+++||.+++.+|+++|+|+-.++..+.
T Consensus        70 e~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~  149 (854)
T KOG0507|consen   70 DYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKE  149 (854)
T ss_pred             cchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccc
Confidence            44444555568899999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCc----------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 013471          229 TPLLEAIKCGHDGVTSLLVKEGASLNV----------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA  298 (442)
Q Consensus       229 tpL~~A~~~~~~~iv~~Ll~~g~~~~~----------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A  298 (442)
                      |+|.+|++.|+.++++.|++.......          ....+|+|.|+++|+.++++.|++.|.++|.....| |+||.|
T Consensus       150 t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talhea  228 (854)
T KOG0507|consen  150 TVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEA  228 (854)
T ss_pred             cHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhH
Confidence            999999999999999999987332211          123368999999999999999999999999988776 899999


Q ss_pred             HHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHH
Q 013471          299 ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG---NKNLIKLLED  345 (442)
Q Consensus       299 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~---~~~~v~~Ll~  345 (442)
                      +..|..++|++|++.|.+...+|.+|+|+|++-...-   ..+++-++..
T Consensus       229 alcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  229 ALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             hhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            9999999999999999999999999999998766543   3455544443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=9.8e-22  Score=167.74  Aligned_cols=133  Identities=19%  Similarity=0.193  Sum_probs=96.3

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC
Q 013471          187 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG  259 (442)
Q Consensus       187 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-------~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~  259 (442)
                      ++.+|..|.||||+|++.|+.  +.++...+..       ++.+|..|.||||+|+..|+.+.+                
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~----------------   71 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ----------------   71 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH----------------
Confidence            345567788888888888873  3343333221       223466677777777766654321                


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCH
Q 013471          260 SFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNK  337 (442)
Q Consensus       260 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~  337 (442)
                                  +++++|++.|++++.++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.
T Consensus        72 ------------e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~  139 (154)
T PHA02736         72 ------------EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA  139 (154)
T ss_pred             ------------HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH
Confidence                        34556666677777777 478899999998888898998887 4888888888899999999988888


Q ss_pred             HHHHHHHHcCCC
Q 013471          338 NLIKLLEDAECT  349 (442)
Q Consensus       338 ~~v~~Ll~~~a~  349 (442)
                      +++++|+++|++
T Consensus       140 ~i~~~Ll~~ga~  151 (154)
T PHA02736        140 KMMNILRAKGAQ  151 (154)
T ss_pred             HHHHHHHHcCCC
Confidence            999988888875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=4.7e-22  Score=179.83  Aligned_cols=161  Identities=24%  Similarity=0.357  Sum_probs=144.9

Q ss_pred             cccccchhhhhHHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHHcC-----CHHHHHHHHHcCCCCCCC-C
Q 013471          152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG-ADPNKTDYDGRSPLHLATSRG-----YEDITLFLIQKGVDINIK-D  224 (442)
Q Consensus       152 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g-----~~~~v~~Ll~~ga~~~~~-~  224 (442)
                      +.+|-.+.+|+|+||||+.++|.++|+.||+.| ++++.+|..|+||+++|+...     +.++|..|...| |+|.+ .
T Consensus       259 yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs  337 (452)
T KOG0514|consen  259 YVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS  337 (452)
T ss_pred             HHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence            445677888999999999999999999999998 679999999999999998643     678899998876 66655 4


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHh
Q 013471          225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN-GVDPSSRDYDHRTPLHVAASE  301 (442)
Q Consensus       225 ~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~  301 (442)
                      ..|+|+|++|+..|+.++++.||..|+|+|.++  |.|+|+.||.+|+.+++++||.. ++|....|.+|.|+|.+|...
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            679999999999999999999999999999976  55999999999999999999976 899999999999999999999


Q ss_pred             ChHHHHHHHHHC
Q 013471          302 GLYLMAKLLLEA  313 (442)
Q Consensus       302 g~~~iv~~Ll~~  313 (442)
                      |+.||.-+|-.+
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            999998888754

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=4.8e-21  Score=165.86  Aligned_cols=133  Identities=25%  Similarity=0.279  Sum_probs=110.8

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHH------cCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCC
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIR------AGADPNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIK  223 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~  223 (442)
                      ++..+..|.|+||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+++|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            34556678999999999999999999864      368899999999999999999999    58899999999999998


Q ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhC
Q 013471          224 DK-FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG  302 (442)
Q Consensus       224 ~~-~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g  302 (442)
                      +. .|.||||+|+..++.+++++|+..                              .|++++.+|..|+||||+|+..+
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~------------------------------~g~~~~~~n~~g~tpL~~A~~~~  143 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQ------------------------------PGIDLHFCNADNKSPFELAIDNE  143 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhC------------------------------CCCCCCcCCCCCCCHHHHHHHCC
Confidence            85 899999999888888777777753                              13445566778888888888888


Q ss_pred             hHHHHHHHHHCCCC
Q 013471          303 LYLMAKLLLEAGAS  316 (442)
Q Consensus       303 ~~~iv~~Ll~~ga~  316 (442)
                      +.+++++|++.++.
T Consensus       144 ~~~iv~~L~~~~~~  157 (169)
T PHA02741        144 DVAMMQILREIVAT  157 (169)
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=174.67  Aligned_cols=146  Identities=18%  Similarity=0.166  Sum_probs=128.5

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHH
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD----YDGRSPLHLATSRGYEDITLFLIQKGVDINIK-DKFGNTPLLEAIK  236 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~  236 (442)
                      .++||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..|+.+++++|+++||+++.+ +..|.||||.|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            457888888999999999999999999874    58999999999999999999999999999986 4689999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  314 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g  314 (442)
                      .++.+++++|+++|++++..+  +.||||.|+..++.+++..+.  |.   ..+..+.+|++++   ++.+++++|++++
T Consensus       114 ~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~---~n~ei~~~Lish~  185 (300)
T PHA02884        114 HGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DN---EISNFYKHPKKIL---INFDILKILVSHF  185 (300)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC---cccccccChhhhh---ccHHHHHHHHHHH
Confidence            999999999999999998754  669999999999998876654  32   2456678888875   4789999999998


Q ss_pred             C
Q 013471          315 A  315 (442)
Q Consensus       315 a  315 (442)
                      +
T Consensus       186 v  186 (300)
T PHA02884        186 I  186 (300)
T ss_pred             H
Confidence            7

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-20  Score=186.87  Aligned_cols=237  Identities=22%  Similarity=0.261  Sum_probs=184.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcC---------CCCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCC----CC-CCCC
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAG---------ADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVD----IN-IKDK  225 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g---------~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~----~~-~~~~  225 (442)
                      .++..|...+.++.+..++..+         .+++.+...|.|.||.|..+   ++-++++.|++.-..    +- ....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4677888888888888877655         45677778899999999874   455889999885221    11 2236


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC-------------------------CChHHHHHHHcCCHHHHHHHHHC
Q 013471          226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD-------------------------AGSFLCTAVARGDSDFLKRVLSN  280 (442)
Q Consensus       226 ~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~-------------------------~~~~L~~A~~~g~~~~v~~Ll~~  280 (442)
                      .|.||||.|+.+.+.++|++|++.|+|++.+.                         |+.||.+|+..++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            79999999999999999999999999887621                         33599999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccc
Q 013471          281 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCS  358 (442)
Q Consensus       281 g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~--~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~  358 (442)
                      |||++++|.+|+|.||..+..-..++-.+++++|++  ...+|+.|-|||.+|+.-|+.++.+.+++......       
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~-------  335 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTD-------  335 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccc-------
Confidence            999999999999999999999999999999999999  89999999999999999999999999999752221       


Q ss_pred             chhhcccCCCcceecCCCCCCcccc-----------ccCceEEEccCcHHHHHHHHhhhcCCC
Q 013471          359 QGMIDKMHPRKCTVFPFHPWDEKVH-----------RRHGIVLWVPHNIEELIKLAVDKLDFP  410 (442)
Q Consensus       359 ~~~~~~~~~~~~~~~~~h~~~~~~~-----------~~~~~~~~lp~~~~~ll~~~~~k~~~~  410 (442)
                          -...|-.++.+|+..-+.-+.           .....+.++.+-+++|++.-.++||..
T Consensus       336 ----W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~Ll~~~i~~LL~~KW~~f~k~  394 (782)
T KOG3676|consen  336 ----WAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLELLDGPIEELLEDKWKAFGKK  394 (782)
T ss_pred             ----eeecccccccccchhcccccchhhhhhhhhcCCcHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence                112223333333332221100           122334456778999999988888873

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.3e-20  Score=160.72  Aligned_cols=132  Identities=24%  Similarity=0.290  Sum_probs=103.9

Q ss_pred             ccchhhhhHHHHHHHhcCCHHHHHHHHHcCC--C-----CCCCCCCCChHHHHHHHcCCH---HHHHHHHHcCCCCCCCC
Q 013471          155 GKHEAELALRVNSAAYHGDLYQLKGLIRAGA--D-----PNKTDYDGRSPLHLATSRGYE---DITLFLIQKGVDINIKD  224 (442)
Q Consensus       155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~-----~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~ga~~~~~~  224 (442)
                      +..+..|.||||+|+..|+.  +..+...+.  +     ++.+|..|.||||+|+..|+.   +++++|+++|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            44566799999999999984  333333322  2     234688999999999999987   46889999999999998


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh
Q 013471          225 -KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL  303 (442)
Q Consensus       225 -~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~  303 (442)
                       ..|.||||+|+..|+.+++++|+..                              .|++++.++..|+||||+|+..|+
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~------------------------------~g~d~n~~~~~g~tpL~~A~~~~~  138 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQ------------------------------PGVNMEILNYAFKTPYYVACERHD  138 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhC------------------------------CCCCCccccCCCCCHHHHHHHcCC
Confidence             4899999999888887777777653                              245566777788999999999999


Q ss_pred             HHHHHHHHHCCCCCC
Q 013471          304 YLMAKLLLEAGASVF  318 (442)
Q Consensus       304 ~~iv~~Ll~~ga~~~  318 (442)
                      .+++++|+++|++.+
T Consensus       139 ~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        139 AKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHHHHcCCCCC
Confidence            999999999888764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=6.2e-20  Score=149.60  Aligned_cols=142  Identities=30%  Similarity=0.287  Sum_probs=116.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 013471          164 RVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i  242 (442)
                      .+.+|+..+.+..|+.||+..++ +|.+|.+|.||||.|+.+|+.++|+.|+..||+++.+...|+||||.||..++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            47789999999999999998877 89999999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh-HHHHHHHH-HCCCCCCCC
Q 013471          243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL-YLMAKLLL-EAGASVFTK  320 (442)
Q Consensus       243 v~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~-~~iv~~Ll-~~ga~~~~~  320 (442)
                      +..|+++|++++                               +.....+||||+||...+ ...+++|+ ..+.++..+
T Consensus       146 a~~LLqhgaDVn-------------------------------A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~  194 (228)
T KOG0512|consen  146 AGRLLQHGADVN-------------------------------AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLK  194 (228)
T ss_pred             HHHHHhccCccc-------------------------------ccccccchhhHHhhcccchHHHHHHHhhccccChhhh
Confidence            777776666555                               445556778888776543 44555555 356788888


Q ss_pred             CCCCCCHHHHHHHcCC
Q 013471          321 DRWGNTPLDEGRMCGN  336 (442)
Q Consensus       321 ~~~g~tpl~~A~~~~~  336 (442)
                      ++.+.||+++|.+-+-
T Consensus       195 nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  195 NNLEETAFDIARRTSM  210 (228)
T ss_pred             cCccchHHHHHHHhhh
Confidence            8888888888877653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=1.7e-19  Score=147.01  Aligned_cols=121  Identities=25%  Similarity=0.261  Sum_probs=99.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHH
Q 013471          197 PLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK  275 (442)
Q Consensus       197 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~  275 (442)
                      .+.+|+..+....|+.||+..++ +|.+|.+|+||||-|+.+|+.+|++.|+..                          
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~--------------------------  119 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS--------------------------  119 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc--------------------------
Confidence            46778888888888888887665 788888888888888777776666666554                          


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCC
Q 013471          276 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK-NLIKLLEDAEC  348 (442)
Q Consensus       276 ~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~-~~v~~Ll~~~a  348 (442)
                           |++++++...||||||-||..++.+++.+|+++|+|+|+......||||+|+.+.+. ..+++|+....
T Consensus       120 -----gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry  188 (228)
T KOG0512|consen  120 -----GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY  188 (228)
T ss_pred             -----cCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccc
Confidence                 556667888999999999999999999999999999999999999999999998775 55677765443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3e-19  Score=156.92  Aligned_cols=136  Identities=29%  Similarity=0.374  Sum_probs=95.9

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHH
Q 013471          185 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT  264 (442)
Q Consensus       185 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~  264 (442)
                      .|.|.-|..|.+|||+||+.|+..+|+.|+.+|+.+|..+....                               ||||+
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgdd-------------------------------tplhl   73 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDD-------------------------------TPLHL   73 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCC-------------------------------cchhh
Confidence            34455555555555555555555555555555555555444444                               45555


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 013471          265 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  344 (442)
Q Consensus       265 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll  344 (442)
                      |+..|+.++|+.|++..+|+|+.+..|+|||||||-.|+..+.+-|+..||.++..|+.|.||++.|.-.-...+.+.-.
T Consensus        74 aaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~ae  153 (448)
T KOG0195|consen   74 AAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAE  153 (448)
T ss_pred             hhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHH
Confidence            55556666666666777788889999999999999999999999999999999999999999999886554444555555


Q ss_pred             HcCCCcc
Q 013471          345 DAECTQL  351 (442)
Q Consensus       345 ~~~a~~~  351 (442)
                      ++|.+..
T Consensus       154 k~gq~~n  160 (448)
T KOG0195|consen  154 KHGQSPN  160 (448)
T ss_pred             HhCCCCC
Confidence            6665543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=5.8e-20  Score=185.68  Aligned_cols=227  Identities=25%  Similarity=0.245  Sum_probs=202.2

Q ss_pred             cCcccceeEEEeeccccccchHHHHhhhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCChHH
Q 013471          120 QGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKT-DYDGRSPL  198 (442)
Q Consensus       120 ~~~~~~~ly~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L  198 (442)
                      +.+..+.+.+.|.|...+...+.+     .....+...+..|.+||..|+..|+..+|+.|+++.++++.+ |..+.|+|
T Consensus       754 e~n~~t~LT~acaggh~e~vellv-----~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLV-----VRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             CccccccccccccCccHHHHHHHH-----HhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            344456677788877654444433     344667788888999999999999999999999999998765 67899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC----hHHHHHHHcCCHHHH
Q 013471          199 HLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG----SFLCTAVARGDSDFL  274 (442)
Q Consensus       199 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~----~~L~~A~~~g~~~~v  274 (442)
                      .+||..|+.++|++||..|++-..++-..+|||.+|...|..++++.|+.+|+.++.+.+.    .||+.|..+|+.+.+
T Consensus       829 Slacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at  908 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAAT  908 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHH
Confidence            9999999999999999999999999999999999999999999999999999999986643    799999999999999


Q ss_pred             HHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          275 KRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       275 ~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      +.|++.|.++|.+- .+.+|+|-+|+-.|+.++|.+||.+.+++..+-+.|.|||+-++..|..++=++|+..||+..
T Consensus       909 ~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  909 LSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             HHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccc
Confidence            99999999999764 567899999999999999999999999999999999999999999999999999999999764

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.9e-19  Score=171.72  Aligned_cols=73  Identities=33%  Similarity=0.562  Sum_probs=67.0

Q ss_pred             CEeeeccCC--CCChhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhhhhhhhhhhcCcHHHHH
Q 013471            1 MEFAFFRGL--PENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY   74 (442)
Q Consensus         1 ~~~~f~~~~--~~~~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~~~~~d~~~~~p~~~~~   74 (442)
                      |-++|-...  ...|.++|.++|++|++||++||.|.|+-|+++ +|.||+.|.++|+++||++|+++++|++++.
T Consensus       237 yNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGE-VvsdPkvIRmNYlKsWFvIDLLSCLPYDi~n  311 (971)
T KOG0501|consen  237 YNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGE-VVSDPKVIRMNYLKSWFVIDLLSCLPYDIFN  311 (971)
T ss_pred             eeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCc-eecChhHHhHHHHHHHHHHHHHhcccHHHHH
Confidence            457886654  335999999999999999999999999999998 9999999999999999999999999999997

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=2.8e-18  Score=132.02  Aligned_cols=89  Identities=39%  Similarity=0.565  Sum_probs=81.4

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 013471          165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS  244 (442)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~  244 (442)
                      ||.|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988876    899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCcCC
Q 013471          245 LLVKEGASLNVDD  257 (442)
Q Consensus       245 ~Ll~~g~~~~~~~  257 (442)
                      +|+++|++++.++
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999988653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=4.4e-18  Score=130.91  Aligned_cols=89  Identities=35%  Similarity=0.490  Sum_probs=55.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      ||+|++.|+.+++++|++.+.+++.  +.+|||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4555555555555555555555444  44555566666666666666666666666677777777777777777777777


Q ss_pred             HHCCCCCCCCC
Q 013471          311 LEAGASVFTKD  321 (442)
Q Consensus       311 l~~ga~~~~~~  321 (442)
                      +++|++++.+|
T Consensus        79 l~~g~~~~~~n   89 (89)
T PF12796_consen   79 LEHGADVNIRN   89 (89)
T ss_dssp             HHTTT-TTSS-
T ss_pred             HHcCCCCCCcC
Confidence            77777776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.77  E-value=3.6e-19  Score=180.09  Aligned_cols=194  Identities=24%  Similarity=0.281  Sum_probs=177.4

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI-KDKFGNTPLLEAI  235 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~  235 (442)
                      .+....|+|-.||..|+.|.+++|+.+|+++..+|+.|.+||.+|+..||..+|+.|+.+.++++. .|+.+.|+|.+||
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            344567899999999999999999999999999999999999999999999999999999999985 5788999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHhChHHHHHHHH
Q 013471          236 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD--YDHRTPLHVAASEGLYLMAKLLL  311 (442)
Q Consensus       236 ~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~g~t~Lh~A~~~g~~~iv~~Ll  311 (442)
                      ..|+.++|++|+.+|++-..++  ..|||.+|...|..++++.|+.+|+.+|.+.  ..|-.||++|..+|+.+.++.|+
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            9999999999999999876654  4599999999999999999999998888764  67899999999999999999999


Q ss_pred             HCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          312 EAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       312 ~~ga~~~~~~~-~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                      +.|.|+|..-. +-+|+|-+|+..|..+++.+|+.+.+..
T Consensus       913 ~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv  952 (2131)
T KOG4369|consen  913 QPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV  952 (2131)
T ss_pred             cccchhccccccccccceeeccccCcchHHHHHHHHhhhh
Confidence            99999998654 6789999999999999999999987743

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=2.3e-17  Score=145.19  Aligned_cols=120  Identities=28%  Similarity=0.346  Sum_probs=105.4

Q ss_pred             hhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 013471          146 LKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK  225 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  225 (442)
                      ...+.....|..+..|.+|||+||+.|+..+++.|+++|+.+|..+....||||+|+.+||.++|+.|+++.+|+|..+.
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavne   98 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNE   98 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhc
Confidence            44566677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC--CCChHHHHH
Q 013471          226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCTA  265 (442)
Q Consensus       226 ~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~--~~~~~L~~A  265 (442)
                      .|+||||+||..|...+.+-|+..|+-++..  .+.|||-.|
T Consensus        99 hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   99 HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            9999999999999988888888887766543  334555443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=1.9e-16  Score=129.34  Aligned_cols=123  Identities=46%  Similarity=0.677  Sum_probs=88.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcC
Q 013471          190 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG  269 (442)
Q Consensus       190 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g  269 (442)
                      ++..|.||||+|+..|+.+++++|+++|++.+..+..|.||+|.|+..++.+++++|++.|+                  
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~------------------   64 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA------------------   64 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------------------
Confidence            34567788888888888888888887777777777777777777777777666666666554                  


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471          270 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       270 ~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                                   +++..+..|.||+|.|+..++.+++++|+++|.+++..+..|.||+++|...++.+++++|
T Consensus        65 -------------~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          65 -------------DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             -------------CccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence                         3444555666777777777777777777777777777777777777777777777777766

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=2.3e-16  Score=128.85  Aligned_cols=98  Identities=39%  Similarity=0.522  Sum_probs=83.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Q 013471          257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  336 (442)
Q Consensus       257 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  336 (442)
                      ++.|||+.|+..++.+++++|++.|.+.+..+..|.||||.|+..++.+++++|+++|++++..+..|.||+|.|+..++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence            35566777777777777777777777777888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCccccc
Q 013471          337 KNLIKLLEDAECTQLSEF  354 (442)
Q Consensus       337 ~~~v~~Ll~~~a~~~~~~  354 (442)
                      .+++++|++++.......
T Consensus        86 ~~~~~~L~~~~~~~~~~~  103 (126)
T cd00204          86 LDVVKLLLKHGADVNARD  103 (126)
T ss_pred             HHHHHHHHHcCCCCcccC
Confidence            999999999885544433

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=6.2e-16  Score=154.41  Aligned_cols=162  Identities=24%  Similarity=0.317  Sum_probs=141.3

Q ss_pred             cccccchhhhhHHHHHHHhc---CCHHHHHHHHHcCCC-CCC----CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 013471          152 FHIGKHEAELALRVNSAAYH---GDLYQLKGLIRAGAD-PNK----TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK  223 (442)
Q Consensus       152 ~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~-~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  223 (442)
                      ..++.....|.|.||.|..+   ++.++++.|++.-+. +|.    -...|+||||+|+.+.+.++|++|++.|||++.+
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            55566678899999999973   456889999986433 221    1356999999999999999999999999998753


Q ss_pred             C-----------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHH
Q 013471          224 D-----------------------KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVL  278 (442)
Q Consensus       224 ~-----------------------~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll  278 (442)
                      .                       ..|..||.+||..++.+++++|+++|+|++.+|  |+|.||..+..-..++-++++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence            2                       137789999999999999999999999999977  569999999999999999999


Q ss_pred             HCCCC--CCCCCCCCCcHHHHHHHhChHHHHHHHHHC
Q 013471          279 SNGVD--PSSRDYDHRTPLHVAASEGLYLMAKLLLEA  313 (442)
Q Consensus       279 ~~g~~--~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  313 (442)
                      ++|++  ...+|..|-|||-+||..|..++.+.+++.
T Consensus       294 ~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  294 ELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999  889999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=4.2e-15  Score=134.69  Aligned_cols=135  Identities=40%  Similarity=0.541  Sum_probs=114.5

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHH
Q 013471          187 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAV  266 (442)
Q Consensus       187 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~  266 (442)
                      ....+..+.+++|.|+..+..+++++++..|++++.++..|.||||+|+..++.                          
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------------  119 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP--------------------------  119 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc--------------------------
Confidence            345566788999999999999999999999999999999999999999998883                          


Q ss_pred             HcCCHHHHHHHHHCCC---CCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471          267 ARGDSDFLKRVLSNGV---DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       267 ~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                      ..++.++++.|++.|+   ..+.++..|+||||+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++.+
T Consensus       120 ~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  199 (235)
T COG0666         120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL  199 (235)
T ss_pred             ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHH
Confidence            2333455555555555   5566789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcC
Q 013471          344 EDAE  347 (442)
Q Consensus       344 l~~~  347 (442)
                      ++.+
T Consensus       200 ~~~~  203 (235)
T COG0666         200 LDKG  203 (235)
T ss_pred             HhcC
Confidence            9976

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=1.7e-15  Score=143.03  Aligned_cols=61  Identities=26%  Similarity=0.637  Sum_probs=59.8

Q ss_pred             HHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        75 ~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +|+.+++..+++++++|+.|.++++.+++.++++.+|.|++.+.++|+..+.||++..|.+
T Consensus       299 eIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L  359 (536)
T KOG0500|consen  299 EIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKL  359 (536)
T ss_pred             HhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEE
Confidence            8999999999999999999999999999999999999999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=1.4e-14  Score=105.84  Aligned_cols=92  Identities=36%  Similarity=0.555  Sum_probs=84.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 013471          164 RVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  243 (442)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv  243 (442)
                      -+.+++++|.++-|+..+..|.++|.+- .|+||||+|+-.|+.+++++|+..|++++.+|+.|.|||-.|+..||.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4789999999999999999998888664 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcC
Q 013471          244 SLLVKEGASLNVD  256 (442)
Q Consensus       244 ~~Ll~~g~~~~~~  256 (442)
                      ++|++.|++-...
T Consensus        84 klLL~~GAdrt~~   96 (117)
T KOG4214|consen   84 KLLLQNGADRTIH   96 (117)
T ss_pred             HHHHHcCccccee
Confidence            9999999875543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=2.2e-14  Score=129.91  Aligned_cols=128  Identities=38%  Similarity=0.502  Sum_probs=107.8

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC---CCCCCCCCC
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY-----EDITLFLIQKGV---DINIKDKFG  227 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~ga---~~~~~~~~g  227 (442)
                      ..+..+.++++.|+..++.+.+++++..|++++.++..|.||||+|+..|+     .++++.|++.|+   ..+.++..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            344446789999999999999999999999999999999999999999999     999999999999   566679999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471          228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA  307 (442)
Q Consensus       228 ~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv  307 (442)
                      .||||+|+..|+.+++++|++.|++++                               ..+..|.|+++.|+..++.+++
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~-------------------------------~~~~~g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPN-------------------------------SRNSYGVTALDPAAKNGRIELV  196 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCc-------------------------------ccccCCCcchhhhcccchHHHH
Confidence            999999999998888888888766555                               4456677777777777777777


Q ss_pred             HHHHHCC
Q 013471          308 KLLLEAG  314 (442)
Q Consensus       308 ~~Ll~~g  314 (442)
                      +.+++.+
T Consensus       197 ~~l~~~~  203 (235)
T COG0666         197 KLLLDKG  203 (235)
T ss_pred             HHHHhcC
Confidence            7777654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.56  E-value=1.3e-14  Score=106.09  Aligned_cols=102  Identities=25%  Similarity=0.221  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcC-CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK  308 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~-~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~  308 (442)
                      -+.|++++|..+-|+-.+..|.+++.. .+++|||+|+.+|..+++++|+..|++++.+|..|-|||.-|+..||.++|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            355667777777777777777666543 4457777777777777777777788888888888888888888888888888


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHH
Q 013471          309 LLLEAGASVFTKDRWGNTPLDEG  331 (442)
Q Consensus       309 ~Ll~~ga~~~~~~~~g~tpl~~A  331 (442)
                      +|+++|||-..+..+|.+.+..+
T Consensus        85 lLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHcCcccceeCCCchhHHhhc
Confidence            88888888887777787766544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=1.6e-14  Score=99.93  Aligned_cols=55  Identities=40%  Similarity=0.524  Sum_probs=33.6

Q ss_pred             HHHCC-CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q 013471          277 VLSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  331 (442)
Q Consensus       277 Ll~~g-~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A  331 (442)
                      |+++| ++++.+|..|.||||+||..|+.+++++|+++|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999999999999999999999999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=1.4e-13  Score=121.34  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=33.0

Q ss_pred             CCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 013471          290 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  346 (442)
Q Consensus       290 ~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~  346 (442)
                      .+.||||.|+..|+.++.++|++.|+.+...|.-|+|+-.+|+.-|+.++|..+-++
T Consensus        78 ~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   78 TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             ccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            345555555555555555555555555555555566666666666666665555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.48  E-value=2.7e-13  Score=141.40  Aligned_cols=88  Identities=38%  Similarity=0.557  Sum_probs=85.4

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  241 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~  241 (442)
                      .+.|+.|+..|+.+.++.|++.|+++|.+|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 013471          242 VTSLLVKE  249 (442)
Q Consensus       242 iv~~Ll~~  249 (442)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            99999998

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=4.2e-14  Score=97.84  Aligned_cols=55  Identities=45%  Similarity=0.642  Sum_probs=33.3

Q ss_pred             HHHcC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 013471          180 LIRAG-ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  234 (442)
Q Consensus       180 Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A  234 (442)
                      |+++| ++++.+|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56778 88999999999999999999999999999999999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.2e-13  Score=95.11  Aligned_cols=54  Identities=44%  Similarity=0.597  Sum_probs=41.8

Q ss_pred             CCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 013471          291 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  344 (442)
Q Consensus       291 g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll  344 (442)
                      |+||||+|+..|+.+++++|+++|++++.+|.+|+||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888888888888888888888888888888875

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=3.2e-13  Score=140.87  Aligned_cols=100  Identities=24%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHH
Q 013471          197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFL  274 (442)
Q Consensus       197 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v  274 (442)
                      +|+.|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            5778888888888888888888888888888888888888888887777777777665543  33566666666666666


Q ss_pred             HHHHHC-------CCCCCCCCCCCCcHHH
Q 013471          275 KRVLSN-------GVDPSSRDYDHRTPLH  296 (442)
Q Consensus       275 ~~Ll~~-------g~~~~~~~~~g~t~Lh  296 (442)
                      ++|+++       |++.+..+..|.+|+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccc
Confidence            666555       5555555555555544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=2.5e-13  Score=93.46  Aligned_cols=54  Identities=41%  Similarity=0.656  Sum_probs=28.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 013471          194 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV  247 (442)
Q Consensus       194 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll  247 (442)
                      |.||||+|++.|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            455555555555555555555555555555555555555555555555555553

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=7.5e-13  Score=125.64  Aligned_cols=93  Identities=31%  Similarity=0.456  Sum_probs=86.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 013471          261 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  340 (442)
Q Consensus       261 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v  340 (442)
                      .|.-|+-.|.+++|+..+..--|+...+..|-||||-|++.||.+||++|++.|+++|..|.+||||||+|+.+++..++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            36668889999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcccc
Q 013471          341 KLLEDAECTQLSE  353 (442)
Q Consensus       341 ~~Ll~~~a~~~~~  353 (442)
                      +.|++.|+.....
T Consensus       633 kqLVe~GaavfAs  645 (752)
T KOG0515|consen  633 KQLVESGAAVFAS  645 (752)
T ss_pred             HHHHhccceEEee
Confidence            9999999876543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=4.3e-13  Score=127.25  Aligned_cols=92  Identities=32%  Similarity=0.441  Sum_probs=86.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 013471          164 RVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  243 (442)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv  243 (442)
                      .|..|+..|.+++|+..+..--|+...+..|.|+||-|+..||.++|++|++.|+++|..|.+||||||.|+.+++..++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            46789999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCc
Q 013471          244 SLLVKEGASLNV  255 (442)
Q Consensus       244 ~~Ll~~g~~~~~  255 (442)
                      +.|++.|+-+-.
T Consensus       633 kqLVe~GaavfA  644 (752)
T KOG0515|consen  633 KQLVESGAAVFA  644 (752)
T ss_pred             HHHHhccceEEe
Confidence            999999986543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=1.4e-12  Score=115.16  Aligned_cols=115  Identities=23%  Similarity=0.226  Sum_probs=91.8

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCH
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI-KDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~  240 (442)
                      ..||..++..|+.+....||+.--++|.+|..|.|||..|+..|+.++|++|++.|+|+|. ++..+.||||+|+.+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            3578999999999999999987666889999999999999999999999999999999984 556788999999999998


Q ss_pred             HHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHH
Q 013471          241 GVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKR  276 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~  276 (442)
                      ++.++|++.|+.+..-+  ++|+-..|+--|+.++|..
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~i  130 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAI  130 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHH
Confidence            88888888887766533  2355555555555555543

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.39  E-value=5.2e-13  Score=128.52  Aligned_cols=132  Identities=27%  Similarity=0.552  Sum_probs=118.7

Q ss_pred             EeeeccC--CCCC-hhHHHHHHHHHHHHHHhh-hceeeEEeCCceEEEechHHHHHHHHhh-hhhhhhhhcCcHHHHH--
Q 013471            2 EFAFFRG--LPEN-LSILDIAGQIAFLVDIIM-QFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDVIY--   74 (442)
Q Consensus         2 ~~~f~~~--~~~~-~~~~~~~~~~~~~~d~~~-~f~~~~~~~~~~~~v~~~~~i~~~y~~~-~~~~d~~~~~p~~~~~--   74 (442)
                      +.+|...  +++. |+++|+++|++|++|+++ +-|.-|+..|..  |.|.+...+||+++ -|-+|+++.+|.++.|  
T Consensus       249 R~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~--ik~kndtrk~Yl~sr~FklDllsiLPldllY~~  326 (815)
T KOG0499|consen  249 RLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDI--IKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLF  326 (815)
T ss_pred             eccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCceE--EEechHHHHHHHHhhhhhhhHHhhhhHHHHHHH
Confidence            4556543  2332 999999999999999987 899999977766  99999999999998 8999999999999998  


Q ss_pred             --------------------------------------------------------------------------------
Q 013471           75 --------------------------------------------------------------------------------   74 (442)
Q Consensus        75 --------------------------------------------------------------------------------   74 (442)
                                                                                                      
T Consensus       327 ~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiR  406 (815)
T KOG0499|consen  327 FGFNPMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIR  406 (815)
T ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceee
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 013471           75 --------------------------------------------------------------------------------   74 (442)
Q Consensus        75 --------------------------------------------------------------------------------   74 (442)
                                                                                                      
T Consensus       407 Cyyfa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevq  486 (815)
T KOG0499|consen  407 CYYFAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQ  486 (815)
T ss_pred             ehhhHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------HHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCc
Q 013471           75 --------------------------------KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN  122 (442)
Q Consensus        75 --------------------------------~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~  122 (442)
                                                      +++-.++..++.+|.||++|++..|..++.++.+-.|.|++.+..+|+
T Consensus       487 nRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGe  566 (815)
T KOG0499|consen  487 NRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGE  566 (815)
T ss_pred             HHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeeccc
Confidence                                            566677889999999999999999999999999999999999999999


Q ss_pred             ccceeEEEeeccc
Q 013471          123 VVDQLYFVCHGVL  135 (442)
Q Consensus       123 ~~~~ly~i~~g~~  135 (442)
                      ....||++-+|.+
T Consensus       567 iGkEMYIIk~Gqv  579 (815)
T KOG0499|consen  567 IGKEMYIIKHGQV  579 (815)
T ss_pred             ccceeEEeecceE
Confidence            9999999999887

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.02  E-value=3.8e-10  Score=106.31  Aligned_cols=104  Identities=34%  Similarity=0.476  Sum_probs=93.4

Q ss_pred             cccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCC
Q 013471          148 SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKF  226 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~  226 (442)
                      .|.....+..+..+..++.+|++.|++..++.+.-.|.|++..|.+.+|+||.||..|+.+++++|++. +.+++.+|.+
T Consensus       493 ~DPRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw  572 (622)
T KOG0506|consen  493 IDPRREGGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRW  572 (622)
T ss_pred             CCcccccCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhcc
Confidence            344444445566677889999999999999999999999999999999999999999999999999996 9999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCC
Q 013471          227 GNTPLLEAIKCGHDGVTSLLVKEGA  251 (442)
Q Consensus       227 g~tpL~~A~~~~~~~iv~~Ll~~g~  251 (442)
                      |+|||.-|...+|.+++++|-+.-.
T Consensus       573 ~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  573 GRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CCCcchHhHhcCcHHHHHHHHHHhc
Confidence            9999999999999999999987643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.97  E-value=5.5e-10  Score=105.21  Aligned_cols=89  Identities=43%  Similarity=0.654  Sum_probs=84.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Q 013471          260 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKN  338 (442)
Q Consensus       260 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~  338 (442)
                      .++++|+..|++..++.+.-.|.|++.+|++.+|+||+||..|+.+++++|++. +.+++.+|++|+|||+-|..-+|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            469999999999999999999999999999999999999999999999999985 7999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 013471          339 LIKLLEDAEC  348 (442)
Q Consensus       339 ~v~~Ll~~~a  348 (442)
                      ++++|.+...
T Consensus       588 v~k~L~~~~~  597 (622)
T KOG0506|consen  588 VVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.93  E-value=4.3e-09  Score=99.75  Aligned_cols=88  Identities=34%  Similarity=0.393  Sum_probs=81.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 013471          261 FLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL  339 (442)
Q Consensus       261 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~  339 (442)
                      -||..++.|+.+..-.|+..|+++|..+ ..|.||||+|++.|+.-=+++|+-+|||+...|.+|.||+.+|...||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            4899999999999999999999999876 579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 013471          340 IKLLEDAEC  348 (442)
Q Consensus       340 v~~Ll~~~a  348 (442)
                      .+-|++..-
T Consensus       216 aeRl~e~~y  224 (669)
T KOG0818|consen  216 AERLVEIQY  224 (669)
T ss_pred             HHHHHHHHH
Confidence            999987543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.90  E-value=7.9e-09  Score=97.97  Aligned_cols=88  Identities=30%  Similarity=0.360  Sum_probs=82.2

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  239 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~  239 (442)
                      ..-.||..++.|+++..-.|+..|+++|..+ ..|.||||.|++.|+..-+++|+-+|||+...|.+|.||+.+|-..||
T Consensus       133 LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  133 LSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence            4457999999999999999999999999887 569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013471          240 DGVTSLLVK  248 (442)
Q Consensus       240 ~~iv~~Ll~  248 (442)
                      .++.+.|++
T Consensus       213 ~~laeRl~e  221 (669)
T KOG0818|consen  213 HELAERLVE  221 (669)
T ss_pred             hHHHHHHHH
Confidence            988887776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.87  E-value=2.9e-09  Score=62.85  Aligned_cols=30  Identities=50%  Similarity=0.645  Sum_probs=25.2

Q ss_pred             CCCcHHHHHHHhChHHHHHHHHHCCCCCCC
Q 013471          290 DHRTPLHVAASEGLYLMAKLLLEAGASVFT  319 (442)
Q Consensus       290 ~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~  319 (442)
                      +|+||||+||..|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478888888888888888888888888863

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1e-08  Score=98.72  Aligned_cols=88  Identities=31%  Similarity=0.446  Sum_probs=70.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Q 013471          260 SFLCTAVARGDSDFLKRVLSNGVD--PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  337 (442)
Q Consensus       260 ~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  337 (442)
                      +.||+|+..|+-++|+|++++|..  ++..|..|.|+||.|+..++-.+.++|++.|+.+...|..|.||-..|-+.|..
T Consensus       901 sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~  980 (1004)
T KOG0782|consen  901 SLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDP  980 (1004)
T ss_pred             hHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCc
Confidence            445555555555555555555421  345667899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 013471          338 NLIKLLEDAE  347 (442)
Q Consensus       338 ~~v~~Ll~~~  347 (442)
                      ++..+|.++.
T Consensus       981 dlaayle~rq  990 (1004)
T KOG0782|consen  981 DLAAYLESRQ  990 (1004)
T ss_pred             hHHHHHhhhh
Confidence            9999997644

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=6.7e-09  Score=61.28  Aligned_cols=29  Identities=45%  Similarity=0.888  Sum_probs=20.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013471          193 DGRSPLHLATSRGYEDITLFLIQKGVDIN  221 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  221 (442)
                      +|+||||+||+.|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36777777777777777777777777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=8.2e-09  Score=62.74  Aligned_cols=33  Identities=45%  Similarity=0.623  Sum_probs=28.8

Q ss_pred             CCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC
Q 013471          290 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  322 (442)
Q Consensus       290 ~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~  322 (442)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            588999999999999999999999999888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.74  E-value=1.7e-08  Score=61.37  Aligned_cols=32  Identities=50%  Similarity=0.893  Sum_probs=25.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 013471          193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKD  224 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  224 (442)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47788888888888888888888888877765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.72  E-value=6.6e-09  Score=104.18  Aligned_cols=85  Identities=26%  Similarity=0.229  Sum_probs=78.9

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      .+..|..|+++||.|+..|..+++++|+++|++++.+| ..|+||||.|+..|+.+|+-+||.+|+.+..+|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            45677889999999999999999999999999999998 56999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 013471          233 EAIKCG  238 (442)
Q Consensus       233 ~A~~~~  238 (442)
                      .-++-.
T Consensus       125 ~~~r~~  130 (1267)
T KOG0783|consen  125 FLSRVL  130 (1267)
T ss_pred             HHhhcc
Confidence            988743

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.69  E-value=9.5e-09  Score=103.07  Aligned_cols=83  Identities=31%  Similarity=0.474  Sum_probs=52.4

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHH
Q 013471          187 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTA  265 (442)
Q Consensus       187 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A  265 (442)
                      .|..|..|+|+||+|+..|..+++++|+++|+++..+|. .|+||||-|+.+|+.+++-.|+.+|               
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g---------------  109 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG---------------  109 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC---------------
Confidence            455666677777777777777777777777777666663 4566666655555555555444444               


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 013471          266 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS  300 (442)
Q Consensus       266 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~  300 (442)
                                      +.+..+|.+|.+||...++
T Consensus       110 ----------------~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  110 ----------------RSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ----------------CceEEecccCCCHHHHHhh
Confidence                            4445667777888776655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.69  E-value=5.4e-08  Score=94.11  Aligned_cols=89  Identities=33%  Similarity=0.440  Sum_probs=80.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC----CCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Q 013471          262 LCTAVARGDSDFLKRVLSNGVDP----SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  337 (442)
Q Consensus       262 L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  337 (442)
                      |.-|+...++..+-+|+.+|...    ...+.+|+|+||+||..|+..+.++|+-+|+|+..+|..|+|+|.||.+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            66788888899999999998543    23467789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 013471          338 NLIKLLEDAECTQ  350 (442)
Q Consensus       338 ~~v~~Ll~~~a~~  350 (442)
                      +++.+|+.+|...
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999999753

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.67  E-value=7.3e-08  Score=92.93  Aligned_cols=118  Identities=21%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHH
Q 013471          165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD--INIKDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~~~~~i  242 (442)
                      +..|+..+++--++....+|-++-.++.+..|.||+|+..|+-++|+|++++|..  ++..+..|.              
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~ge--------------  935 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGE--------------  935 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhh--------------
Confidence            4556666666666666666666666666666777777777777777777766543  233344444              


Q ss_pred             HHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC
Q 013471          243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  313 (442)
Q Consensus       243 v~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  313 (442)
                                       |+||.|+..++..+.++|++.|+.+...|..|.||-..|-+.|..++..||-.+
T Consensus       936 -----------------t~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  936 -----------------TALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             -----------------HHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence                             445555555555555555555666667778888888888888888888887653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.64  E-value=1.2e-07  Score=91.88  Aligned_cols=94  Identities=29%  Similarity=0.374  Sum_probs=83.9

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCCC--CC--CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGAD--PN--KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  237 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~~--~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  237 (442)
                      -..|..|....++..+-+||.+|..  +|  ..+.+|+|+||+||+.|+..+.++|+-+|+|+..+|..|+|+|.||-..
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc
Confidence            3468889999999999999999865  33  3356789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCc
Q 013471          238 GHDGVTSLLVKEGASLNV  255 (442)
Q Consensus       238 ~~~~iv~~Ll~~g~~~~~  255 (442)
                      |..+++..|+++|+..+.
T Consensus       705 ~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             ccHHHHHHHHHcCCCccc
Confidence            999999999999987653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.62  E-value=9.4e-08  Score=92.00  Aligned_cols=86  Identities=37%  Similarity=0.402  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCHHHHHHHH--HCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 013471          261 FLCTAVARGDSDFLKRVL--SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN  338 (442)
Q Consensus       261 ~L~~A~~~g~~~~v~~Ll--~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  338 (442)
                      |+|+++...+.+-+..++  +.+..++.+|..|+||||+|+..|+.+.++.|+.+||++..+|+.|++|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            366666666555444433  234567788888899999999999999999999999999899999999999999999888


Q ss_pred             HHHHHHHc
Q 013471          339 LIKLLEDA  346 (442)
Q Consensus       339 ~v~~Ll~~  346 (442)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            77666643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.61  E-value=9.8e-08  Score=91.87  Aligned_cols=87  Identities=28%  Similarity=0.412  Sum_probs=76.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHc--CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRA--GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      .|+|+++...+.+-+..++..  +..++..|..|.||||+|+.-|+.+.++.|+.+|+++..++..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            469999999888888775543  456788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 013471          241 GVTSLLVKE  249 (442)
Q Consensus       241 ~iv~~Ll~~  249 (442)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            887777654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.41  E-value=1.5e-06  Score=88.59  Aligned_cols=118  Identities=19%  Similarity=0.151  Sum_probs=91.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHcC----CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471          164 RVNSAAYHGDLYQLKGLIRAG----ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  239 (442)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~  239 (442)
                      ....|+..|+.-.|+..++..    .++|.+|.-|+++|+.|+.+.+.+++++|++++...       ..+|-+|+..|.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            467899999999999998753    457888999999999999999999999999986544       468899999999


Q ss_pred             HHHHHHHHHcCCCCC------------cCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 013471          240 DGVTSLLVKEGASLN------------VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD  288 (442)
Q Consensus       240 ~~iv~~Ll~~g~~~~------------~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  288 (442)
                      .++|+.++.+-....            ....-||+.+||..+++|+++.|+.+|+.+....
T Consensus       101 v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            999999998743321            1223367777777777777777777776665443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.37  E-value=1.1e-06  Score=73.77  Aligned_cols=69  Identities=23%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             CCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          281 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       281 g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      +.++|.+|..|||||+.|+..|+.+.+.||+.+| +.+.+.|..|.++..+|-+.|+.++++.|.+.-..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4678999999999999999999999999999999 89999999999999999999999999999986443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.37  E-value=2.9e-07  Score=96.25  Aligned_cols=91  Identities=37%  Similarity=0.420  Sum_probs=83.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Q 013471          256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  335 (442)
Q Consensus       256 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  335 (442)
                      ..+.++||.|+.++..-++++|+++|+++|..|..|+||||.+...|+...+..|+++|++.+..+.+|++|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CHHHHHHHHHc
Q 013471          336 NKNLIKLLEDA  346 (442)
Q Consensus       336 ~~~~v~~Ll~~  346 (442)
                      +.+.+-++.-.
T Consensus       734 ~~d~~~l~~l~  744 (785)
T KOG0521|consen  734 NADIVLLLRLA  744 (785)
T ss_pred             cccHHHHHhhh
Confidence            77776665543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.36  E-value=2.7e-06  Score=86.81  Aligned_cols=121  Identities=24%  Similarity=0.284  Sum_probs=85.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHH
Q 013471          192 YDGRSPLHLATSRGYEDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA  267 (442)
Q Consensus       192 ~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~  267 (442)
                      ..+.--...|+..|+.-.|+..++..    .++|..|.-|.++|+.|+.+.+.++.++|++++...     +.+|.+|+.
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~   97 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIA   97 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHH
Confidence            34555778899999999999988852    467889999999999999999999999999987655     457888888


Q ss_pred             cCCHHHHHHHHHCCCCCCC----------CCCCCCcHHHHHHHhChHHHHHHHHHCCCCC
Q 013471          268 RGDSDFLKRVLSNGVDPSS----------RDYDHRTPLHVAASEGLYLMAKLLLEAGASV  317 (442)
Q Consensus       268 ~g~~~~v~~Ll~~g~~~~~----------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~  317 (442)
                      .|..++|+.++.+-.....          .-..+-|||.+||..++.||++.|+++|+++
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            8888888888876432211          1112334444444444444444444444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.29  E-value=1.9e-06  Score=79.63  Aligned_cols=73  Identities=25%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471          164 RVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  237 (442)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  237 (442)
                      -|+.||+.|+++.|++|++.|.++|..|....+||.+|+..||.++|++|+++||-...-..+|... |+++.+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            4899999999999999999999999999999999999999999999999999999766544555544 344433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.21  E-value=4e-06  Score=70.46  Aligned_cols=69  Identities=19%  Similarity=0.221  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS  252 (442)
Q Consensus       184 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~  252 (442)
                      +.++|.+|..|+|||+.|+..|..+.+.||+.+| +.+...|..|.+++.+|-+.|..++++.|.+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4567888888888888888888888888888888 88888888888888888888888888888876433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=6.7e-06  Score=76.11  Aligned_cols=58  Identities=34%  Similarity=0.427  Sum_probs=35.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471          261 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  318 (442)
Q Consensus       261 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~  318 (442)
                      -|..||+.|+++.|++|++.|.++|++|....+||.+|+..||.++||+|+++||-..
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            3556666666666666666666666666666666666666666666666666665433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=2.1e-06  Score=89.90  Aligned_cols=95  Identities=33%  Similarity=0.384  Sum_probs=60.2

Q ss_pred             HcCCCCCCC--CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC--C
Q 013471          182 RAGADPNKT--DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--D  257 (442)
Q Consensus       182 ~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~--~  257 (442)
                      ..+++.|..  -..|.|+||.|+..|..-++++|+++|+++|..|..|.+|+|.+...|+...+..|+++|++.+..  +
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~  721 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPD  721 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCcc
Confidence            344444432  244667777777777777777777777777777777777777777777777777777777666653  3


Q ss_pred             CChHHHHHHHcCCHHHHHH
Q 013471          258 AGSFLCTAVARGDSDFLKR  276 (442)
Q Consensus       258 ~~~~L~~A~~~g~~~~v~~  276 (442)
                      +..++..|....+.+.+-+
T Consensus       722 ~~~~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLL  740 (785)
T ss_pred             CcchhhHHhhhccccHHHH
Confidence            4466666655544444333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.01  E-value=8.4e-06  Score=85.04  Aligned_cols=123  Identities=21%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCC--CcCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHH
Q 013471          223 KDKFGNTPLLEAIKCGHDGVTSLLVKE-GASL--NVDDAGSFLCTAVARGDSDFLKRVL-SNGVDPSSRDYDHRTPLHVA  298 (442)
Q Consensus       223 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~-g~~~--~~~~~~~~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~Lh~A  298 (442)
                      ....|++-+|+++..+..-.++.+++- |...  -..++.+.+|+ |..++++..-+|. -.|..++.+|..||||||+|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            334555666666666655555555553 2211  12333445555 4444444444443 35777888999999999999


Q ss_pred             HHhChHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 013471          299 ASEGLYLMAKLLLEAGASV------FTKDRWGNTPLDEGRMCGNKNLIKLLEDA  346 (442)
Q Consensus       299 ~~~g~~~iv~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~  346 (442)
                      +..|+..++..|++.|++.      ......|.|+-..|..+|+..+.-+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999877654      33445699999999999999888888764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.00  E-value=8.1e-06  Score=85.17  Aligned_cols=128  Identities=20%  Similarity=0.177  Sum_probs=101.6

Q ss_pred             cccccchhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCc
Q 013471          152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNT  229 (442)
Q Consensus       152 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t  229 (442)
                      .........++|.+|.++..+..-.++.+++- |......|.+|.-.+|+ |..++.+.+-+|. -.|..++.+|..|+|
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~t  643 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWT  643 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCc
Confidence            34455566789999999999999999999885 66667778888888888 4455566655555 468899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCc--------CCCChHHHHHHHcCCHHHHHHHHHC
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVARGDSDFLKRVLSN  280 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~--------~~~~~~L~~A~~~g~~~~v~~Ll~~  280 (442)
                      |||+|+..|+..++..|.+.|++...        .++.|+-..|-.+|+..+..+|-+.
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999988775443        3355777777788888888777765

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.40  E-value=0.00032  Score=67.63  Aligned_cols=73  Identities=30%  Similarity=0.373  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471          270 DSDFLKRVLSNGVDPS------SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       270 ~~~~v~~Ll~~g~~~~------~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                      -...+++|.+++...|      ..+..-.|+||+|+..|..++|.+||+.|+|+..+|..|+||.+++.   +.++-..+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            3678899998877664      34566789999999999999999999999999999999999999887   45554444


Q ss_pred             HH
Q 013471          344 ED  345 (442)
Q Consensus       344 l~  345 (442)
                      +.
T Consensus       480 ~a  481 (591)
T KOG2505|consen  480 IA  481 (591)
T ss_pred             HH
Confidence            43

>smart00248 ANK ankyrin repeats

Probab=96.91  E-value=0.0016  Score=36.92  Aligned_cols=27  Identities=52%  Similarity=0.786  Sum_probs=17.6

Q ss_pred             CCcHHHHHHHhChHHHHHHHHHCCCCC
Q 013471          291 HRTPLHVAASEGLYLMAKLLLEAGASV  317 (442)
Q Consensus       291 g~t~Lh~A~~~g~~~iv~~Ll~~ga~~  317 (442)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566666666666666666666666554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.91  E-value=0.0018  Score=36.65  Aligned_cols=27  Identities=48%  Similarity=0.892  Sum_probs=16.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCC
Q 013471          194 GRSPLHLATSRGYEDITLFLIQKGVDI  220 (442)
Q Consensus       194 g~t~L~~A~~~g~~~~v~~Ll~~ga~~  220 (442)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.88  E-value=0.0017  Score=62.73  Aligned_cols=63  Identities=24%  Similarity=0.316  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHcCCCCCCC------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013471          173 DLYQLKGLIRAGADPNKT------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  235 (442)
Q Consensus       173 ~~~~v~~Ll~~g~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  235 (442)
                      -...+++|.+++++.|..      +.--.|+||+|+..|.-++|.+||+.|+||...|..|.||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            366788888887776532      344679999999999999999999999999999999999999887

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.81  E-value=0.032  Score=47.40  Aligned_cols=137  Identities=18%  Similarity=0.075  Sum_probs=81.7

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  241 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~  241 (442)
                      ...+..|++.+.+.++++.-+...+-   -...++.+-.||+..+.++|+++-+.   ...  .+-.+....|....+.+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchh
Confidence            34677888888888888776543211   13456778888888888888888443   111  22235566677777765


Q ss_pred             HH----HHHHHcCCCCCcCCCC----hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 013471          242 VT----SLLVKEGASLNVDDAG----SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  312 (442)
Q Consensus       242 iv----~~Ll~~g~~~~~~~~~----~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~  312 (442)
                      +.    .++.++..+....+..    .-|..|+..|-...+...+++|.+++.      ++|..|+..++-.++.+++.
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            42    2233332222111111    236667777777777777777665542      66777777777777666653

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.53  E-value=0.023  Score=49.68  Aligned_cols=45  Identities=20%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 013471          165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK  216 (442)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  216 (442)
                      |-.|+...+.+.+.-++...       ..-.+++-+|..++..+++-+|+.+
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhh
Confidence            66788888888777776432       1235678888888888888888864

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.46  E-value=0.022  Score=48.30  Aligned_cols=139  Identities=14%  Similarity=0.103  Sum_probs=99.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHH
Q 013471          195 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL  274 (442)
Q Consensus       195 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v  274 (442)
                      ...|..|+..+.+.+++..-+...+-   -...++-.-.||+..+.|+|+|+   |.+....+..+-.-.|....+.++.
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI---~qnL~i~~~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWI---GQNLHIYNPEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHH---hhccCCCCchhhhhhhhhccchhHH
Confidence            34677899999999988887653211   23556788899999999999999   4455556666778889999888763


Q ss_pred             HH----HHHCCCCCCCCCCC--CCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          275 KR----VLSNGVDPSSRDYD--HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       275 ~~----Ll~~g~~~~~~~~~--g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      ..    +.++...-+..|..  -..-|..|+..|....|.-.+++|.+++.      ++|..|+..+|..++.+++.
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            21    22222111111100  11247789999999999999999988754      79999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.93  E-value=0.062  Score=47.07  Aligned_cols=47  Identities=23%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHCC-CCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          303 LYLMAKLLLEAG-ASVFT---KDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       303 ~~~iv~~Ll~~g-a~~~~---~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      +..++++.+++| +++|.   +-+.|.|-|+-|..+++.+++.+|+++||.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            567888999998 67764   456899999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins

Probab=92.06  E-value=0.5  Score=34.41  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=45.2

Q ss_pred             eEEEccCcHHHHHHHHhhhcCCCCCCcc-cccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          388 IVLWVPHNIEELIKLAVDKLDFPDGHSI-LSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       388 ~~~~lp~~~~~ll~~~~~k~~~~~~~~~-~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      +.-..-.+++||+.=+.++|+.+.+.++ +.+||-+||+   ...+-|+=+|.+++.+|
T Consensus        15 kkGV~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L~~gq   73 (81)
T cd06537          15 RKGLTAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVLEQGQ   73 (81)
T ss_pred             eEeEEccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEECCCC
Confidence            3334578999999999999999866554 7789999977   88999999999998765

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.64  E-value=0.78  Score=33.44  Aligned_cols=46  Identities=17%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 013471          164 RVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK  216 (442)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  216 (442)
                      .+..|+..|+.++++.+++.+ .++      ..++..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            366677777777777766543 221      3466777777777777777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=90.69  E-value=0.52  Score=46.75  Aligned_cols=59  Identities=27%  Similarity=0.577  Sum_probs=55.0

Q ss_pred             HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      -...|..+++.+|+|++.+++.+..+..-+..+|+.-++.|+.+++....+|+++.|.+
T Consensus       266 r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V  324 (732)
T KOG0614|consen  266 RHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTV  324 (732)
T ss_pred             HHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceE
Confidence            35567788899999999999999999999999999999999999999999999999987

>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45)

Probab=90.42  E-value=0.8  Score=33.31  Aligned_cols=55  Identities=29%  Similarity=0.407  Sum_probs=43.7

Q ss_pred             eEEEccCcHHHHHHHHhhhcCCC-CC-CcccccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          388 IVLWVPHNIEELIKLAVDKLDFP-DG-HSILSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       388 ~~~~lp~~~~~ll~~~~~k~~~~-~~-~~~~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      +.-..-.|+++|+.-+.++|+.. .+ +-++.+||-+|||   ...+-|+=.|.+++.+|
T Consensus        15 k~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l~~gq   74 (78)
T cd01615          15 KKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLLEPGQ   74 (78)
T ss_pred             eEEEEcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEECCCC
Confidence            33445789999999999999993 33 3457799999977   88888998888888765

These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.01  E-value=0.64  Score=33.90  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 013471          195 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE  249 (442)
Q Consensus       195 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~  249 (442)
                      ...+..|+..|+.|+++.+++.+ .++      ...+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34677788888888888877654 111      3567778888888888877775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=89.94  E-value=0.076  Score=46.40  Aligned_cols=46  Identities=30%  Similarity=0.497  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhh-hhhhhhhhcCcHHHH
Q 013471           15 ILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDVI   73 (442)
Q Consensus        15 ~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~-~~~~d~~~~~p~~~~   73 (442)
                      ++|.+.+++|.+|+++++++....             +++|+++ |.++|++..+|..+.
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~   47 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVS   47 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhccccccccccccc
Confidence            579999999999999999986654             7889987 788999999998554

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=88.69  E-value=0.81  Score=35.60  Aligned_cols=46  Identities=30%  Similarity=0.530  Sum_probs=43.3

Q ss_pred             CccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        90 lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +|.+.++..+.++...+....+.+++.+..+++..+.+|++..|.+
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v   46 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEV   46 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEE
Confidence            4788999999999999999999999999999999999999999987

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation

Probab=88.65  E-value=1.4  Score=31.71  Aligned_cols=55  Identities=27%  Similarity=0.408  Sum_probs=44.0

Q ss_pred             eEEEccCcHHHHHHHHhhhcCCCC-CCcc-cccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          388 IVLWVPHNIEELIKLAVDKLDFPD-GHSI-LSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       388 ~~~~lp~~~~~ll~~~~~k~~~~~-~~~~-~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      +.-..-.|+++|+.-+.++|+.+. +.++ +.+||-+|||   ...+-|+=.|.+++.+|
T Consensus        13 k~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tLp~nt~l~~L~~gq   72 (74)
T smart00266       13 RKGVAASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPDNTELMALEKGE   72 (74)
T ss_pred             eEEEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcCCCCcEEEEEcCCC
Confidence            334457899999999999999973 3444 7799999977   78888888888887765

>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins

Probab=88.55  E-value=1.4  Score=32.04  Aligned_cols=53  Identities=21%  Similarity=0.313  Sum_probs=43.3

Q ss_pred             EEccCcHHHHHHHHhhhcCCCC-C-CcccccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          390 LWVPHNIEELIKLAVDKLDFPD-G-HSILSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       390 ~~lp~~~~~ll~~~~~k~~~~~-~-~~~~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      -..-.+++||+.-+.++|+... + +-++.+||-+||+   ...+-|+=+|.+++.+|
T Consensus        17 GV~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L~~gq   74 (78)
T cd06539          17 GVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVLEKGQ   74 (78)
T ss_pred             EEEecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEECCCC
Confidence            3457899999999999999953 2 4457899999977   88888999999988765

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=88.51  E-value=0.85  Score=41.39  Aligned_cols=53  Identities=19%  Similarity=0.429  Sum_probs=50.1

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..++..++|.+.+++.+.++........+++++.++.+|+..+.+|++.+|.+
T Consensus         7 ~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v   59 (236)
T PRK09392          7 IRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLV   59 (236)
T ss_pred             HHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEE
Confidence            46788999999999999999999999999999999999999999999999987

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=88.06  E-value=0.97  Score=34.92  Aligned_cols=46  Identities=37%  Similarity=0.623  Sum_probs=43.2

Q ss_pred             CccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        90 lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +|...+++.+..++..++...+.+++.+..+++..+.+|++..|.+
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v   46 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSV   46 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence            4788999999999999999999999999999999999999999987

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>PLN02868 acyl-CoA thioesterase family protein

Probab=87.26  E-value=0.97  Score=44.94  Aligned_cols=53  Identities=25%  Similarity=0.416  Sum_probs=49.8

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..+.++++|++.+++.+.++...+....+++++.++.+++....+|++.+|.+
T Consensus         8 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V   60 (413)
T PLN02868          8 EFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEA   60 (413)
T ss_pred             HHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEE
Confidence            44678999999999999999999999999999999999999999999999987

>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins

Probab=86.92  E-value=2.1  Score=31.17  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             eEEEccCcHHHHHHHHhhhcCCCCCC-cccccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          388 IVLWVPHNIEELIKLAVDKLDFPDGH-SILSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       388 ~~~~lp~~~~~ll~~~~~k~~~~~~~-~~~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      +.-..-.|+++|+.-+.++|+...+. -++.+||-+||+   ...+-|+=.|.+++.+|
T Consensus        15 k~GV~A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tLp~nt~l~vL~~gq   73 (79)
T cd06538          15 RKGIMADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQALADNTVFMVLGKGQ   73 (79)
T ss_pred             eEeEEcCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhCCCCcEEEEECCCC
Confidence            33345789999999999999996443 457799999977   78888888888887665

The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.

>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD

Probab=86.22  E-value=2  Score=31.45  Aligned_cols=54  Identities=26%  Similarity=0.321  Sum_probs=43.3

Q ss_pred             EEEccCcHHHHHHHHhhhcCCC---CCCcc-cccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          389 VLWVPHNIEELIKLAVDKLDFP---DGHSI-LSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       389 ~~~lp~~~~~ll~~~~~k~~~~---~~~~~-~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      .-..-.|+++|+.-+.++|+.+   .+.++ +.+||-+|||   ...+-|+=.|.+++.+|
T Consensus        16 ~GV~A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~l~~L~~gq   76 (80)
T cd06536          16 HGVAASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPNTKFVLLAENE   76 (80)
T ss_pred             EeEEcCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCCcEEEEECCCC
Confidence            3345789999999999999997   23444 7799999977   78888888888888765

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.

>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease

Probab=85.76  E-value=1.6  Score=31.86  Aligned_cols=54  Identities=30%  Similarity=0.473  Sum_probs=42.1

Q ss_pred             EEEccCcHHHHHHHHhhhcCCC-CCCc-ccccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          389 VLWVPHNIEELIKLAVDKLDFP-DGHS-ILSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       389 ~~~lp~~~~~ll~~~~~k~~~~-~~~~-~~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      .-..-.|++||+.-|.++|+.. .+.+ ++.+||-+|||   .-.+-|+=.|.+++.+|
T Consensus        16 ~Gv~A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm~L~~ge   74 (78)
T PF02017_consen   16 KGVAASSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLMLLEKGE   74 (78)
T ss_dssp             EEEEESSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEEEEESSS
T ss_pred             EeEEcCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEEEECCCC
Confidence            3345689999999999999998 3444 46689999996   77888888888888765

The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=84.52  E-value=2.1  Score=40.40  Aligned_cols=54  Identities=24%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ...+++.-||+..+++.+.+++..|....++-++.++.|++..+.+|++..|..
T Consensus       121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~  174 (368)
T KOG1113|consen  121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTF  174 (368)
T ss_pred             HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceE
Confidence            444567888999999999999999999999999999999999999999999886

>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease

Probab=82.08  E-value=3.5  Score=29.87  Aligned_cols=53  Identities=26%  Similarity=0.454  Sum_probs=42.8

Q ss_pred             EEccCcHHHHHHHHhhhcCCCC-CCcc-cccCCceeeE--eeeeecCCeEEEeecCC
Q 013471          390 LWVPHNIEELIKLAVDKLDFPD-GHSI-LSEDGGKILD--VDMINDGQKLYLISETQ  442 (442)
Q Consensus       390 ~~lp~~~~~ll~~~~~k~~~~~-~~~~-~~~~~~~i~~--i~~ird~d~~~~~~~~~  442 (442)
                      -..-.|+++|+.=+.++|+.+. +.++ +.+||-+|++  ...+-|+=.|.+++.+|
T Consensus        17 GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVtEeyF~tLp~nT~lmvL~~gq   73 (77)
T cd06535          17 GVAAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVTEEYFPTLPDNTELVLLTPGQ   73 (77)
T ss_pred             eEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEehHHHHhcCCCCcEEEEEcCCC
Confidence            3457899999999999999964 3444 8899999976  77888888888887665

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.

>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males

Probab=81.62  E-value=1.9  Score=29.76  Aligned_cols=47  Identities=26%  Similarity=0.582  Sum_probs=37.1

Q ss_pred             CcHHHHHHHHhhhcCCCCC-CcccccCCceeeEeeeeecCCeEEEeecC
Q 013471          394 HNIEELIKLAVDKLDFPDG-HSILSEDGGKILDVDMINDGQKLYLISET  441 (442)
Q Consensus       394 ~~~~~ll~~~~~k~~~~~~-~~~~~~~~~~i~~i~~ird~d~~~~~~~~  441 (442)
                      .+++.+++...++.+.+.+ .++.+.+|.+|.+++=++||+. |+..++
T Consensus         9 ~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~-yVa~g~   56 (60)
T PF03607_consen    9 RSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGS-YVASGR   56 (60)
T ss_dssp             SSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEE-EEEESS
T ss_pred             cCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCE-EEEEcC
Confidence            5788999988888888644 6688999999999999999977 544443

Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	442
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-29
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-28
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-28
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-27
2xee_A	157	Structural Determinants For Improved Thermal Stabil		9e-21
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-20
1uoh_A	226	Human Gankyrin Length = 226		3e-18
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-18
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-18
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-18
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-16
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-15
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-15
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-15
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-15
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		8e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-13
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-12
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		8e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-11
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-11
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		5e-11
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-11
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-11
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		6e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-11
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-10
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-10
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-10
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		5e-10
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-10
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		7e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		7e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-07
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		4e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		5e-09
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		5e-09
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		4e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		6e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		7e-09
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		8e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		5e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		8e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		7e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		8e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		9e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		7e-05
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		1e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		7e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		7e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		3e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		8e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		7e-04
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		8e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           +EL  R+  AA +G+  ++K LI  GAD N +D DGR+PLH A   G+++I   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N KD  G TPL  A K GH  +  LL+ +GA +N                        
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN------------------------ 97
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                  ++D D RTPLH AA EG   + KLL+  GA V T D  G TPLD  R  GN+ 
Sbjct: 98  -------AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 339 LIKLLE 344
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           +EL  R+  AA +G+  ++K L+  GADPN +D DGR+PLH A   G+++I   L+ KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D N KD  G TPL  A + GH  +  LL                               L
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLL-------------------------------L 90
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
           S G DP+++D D RTPLH AA  G   + KLLL  GA   T D  G TPLD  R  GN+ 
Sbjct: 91  SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 339 LIKLLE 344
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           +EL  R+  AA +G+  ++K LI  GAD N +D DGR+PLH A   G++++   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N KD  G TPL  A + GH  V  LL+ +GA +N                        
Sbjct: 62  DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN------------------------ 97
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                  ++D D RTPLH AA  G   + KLL+  GA V T D  G TPLD  R  GN+ 
Sbjct: 98  -------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 339 LIKLLE 344
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           +EL  R+  AA +G+  ++K L+  GAD N +D DG++PLHLA   G++++   L+ +G 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D N KD  G TPL  A + GH  V  LL                               L
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLL-------------------------------L 90
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
           S G DP+++D D +TPLH+AA  G   + KLLL  GA   T D  G TPLD  R  GN+ 
Sbjct: 91  SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 339 LIKLLE 344
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
           +L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
           +N KDK G TPL  A + GH  +  +L+K GA +N                         
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------- 95
Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
                 ++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     GN+++
Sbjct: 96  ------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 340 IKLLEDA 346
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
           +L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
           +N KDK G TPL  A + GH  +  +L+K GA +N                         
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------- 95
Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
                 ++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     G++++
Sbjct: 96  ------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 340 IKLLEDA 346
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 253 LNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310
           +N  D    + L  A   G  + +K +L  G D +++D + RTPLH+AA  G   + KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 311 LEAGA 315
           LEAGA
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 265 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 324
           A   G  + +K +L  G D +++D + RTPLH+AA  G   + KLLLEAGA V  KD+ G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 325 NTPLDEGRMCGNKNLIKLLEDA 346
            TPL      G+  ++KLL +A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEA 90

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N KDK G TPL  A + GH  +  +L+K GA +N                        
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------ 107
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                  ++D D  TPLH+AA EG   + ++LL+AGA V  +D++G T  D     GN++
Sbjct: 108 -------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 163 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
           L V + AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N
Sbjct: 8   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKR 276
            KD  G +PL  A   G D +   L+ +GA +N V+  G   CT    A ++   +    
Sbjct: 68  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 124
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGR 332
           +L  G +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 184
Query: 333 M 333
           +
Sbjct: 185 V 185

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 163 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
           L V + AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N
Sbjct: 9   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKR 276
            KD  G +PL  A   G D +   L+ +GA +N V+  G   CT    A ++   +    
Sbjct: 69  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 125
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGR 332
           +L  G +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 333 M 333
           +
Sbjct: 186 V 186

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N TD+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  D +G TPL  A   GH  +  +L+K GA +N                        
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN------------------------ 107
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                  ++DY+  TPLH+AA +G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 108 -------AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N TD DG +PLHLA S G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  D  G TPL  A   GH  +  +L+K GA +N                        
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN------------------------ 107
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                  + D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 108 -------AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 169 AYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKRVLSNGV 282
            +PL  A   G D +   L+ +GA +N V+  G   CT    A ++   +    +L  G 
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 333
           +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 169 AYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKRVLSNGV 282
            +PL  A   G D +   L+ +GA +N V+  G   CT    A ++   +    +L  G 
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 333
           +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G++PLHLA  +G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  DK G+TPL  A   GH  +  +L+K GA +N  D   F                 
Sbjct: 72  DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N +D+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  D  G TPL  A   GH  V  +L+K GA +N +D   F                 
Sbjct: 72  DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF----------------- 114
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                         TPLH+AA+ G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D++  D FG TPL  A   GH  +  +L+K                              
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLLK------------------------------ 101
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
            NG D ++ D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKR 276
           D+N KD  G TPL  A + GH  +  +L+K GA +N  D+  F  L  A  RG  + ++ 
Sbjct: 72  DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310
           +L NG D +++D   +T   ++   G   +A++L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D G  L  A   G  D ++ +++NG D ++RD+   TPLH+AA  G   + ++LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIK-LLEDAECTQLSEFH 355
           V  KD  G TPL      G+  +++ LL++      S+ H
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D                     
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD--------------------- 110
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
            NG+          TPLH+AA+ G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 111 DNGI----------TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
           +L  ++  AA  G   +++ L+  GAD N  D+ GR+PLH+A + G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
           +N  D  G TPL  A   GH  +  +L+K GA +N  DA                     
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI------------------ 102
Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
                        TPL++AA  G   + ++LL+ GA V  +D++G T  D     GN++L
Sbjct: 103 -------------TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 340 IKLLE 344
            ++L+
Sbjct: 150 AEILQ 154

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 201 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 260
           A   G +D    L+  G D+N  D FG TPL   +  GH  +  +L+K  A +N  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 261 F--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 318
           +  L  A  RG  + ++ +L  G D ++ DY   TPLH+AA +G   + ++LL+ GA V 
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 319 TKDRWGNTPLDEGRMCGNKNLIKLLE 344
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D           GD        
Sbjct: 72  DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD---------TWGD-------- 114
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 211
           +G   +E   ++  AA  GD+  +K L    +  N  D +GR  +PLH A       +  
Sbjct: 3   MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 212 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 62  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 111
Query: 272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 329
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 112 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 336
           +L +G D  ++D     PLH A S G Y +A+LL++ GA V   D W  TPL E    G 
Sbjct: 63  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
Query: 337 KNLIKLL 343
             + KLL
Sbjct: 123 YEICKLL 129

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 226
           AA +  L  +K LI+AGA  +  D +G + LHLA  +G+ ++  +L+  G +D+N +D  
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT--AVARGDSDFLKRVLSNGVDP 284
           G TP++ A +  H  +  LL+ +G+ +N+ D    +C   A   G  D  + +L+   D 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 328
            + +    +PLH+AA E  Y    L L   + V  K++ G TPL
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 33/187 (17%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA-GSFLCTAVARGDSDFLKRV 277
           D+N  D  G+TPL  A K GH  +  +L+K GA +N DD  GS                 
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS----------------- 114
Query: 278 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 337
                          TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN+
Sbjct: 115 ---------------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 338 NLIKLLE 344
           +L ++L+
Sbjct: 160 DLAEILQ 166

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 82/178 (46%), Gaps = 36/178 (20%)
Query: 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 211
           +G  EA+  L    AA  GD+  +K L    +  N  D +GR  +PLH A       +  
Sbjct: 3   MGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 212 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 109
Query: 272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 329
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 110 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 336
           +L +G D  ++D     PLH A S G Y +A+LL++ GA V   D W  TPL E    G 
Sbjct: 61  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 337 KNLIKLL 343
             + KLL
Sbjct: 121 YEICKLL 127

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A++ G L  +K L++ GA PN ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A + GH  +  LL++  A+ N+        L  A   G  + +  +L      +
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                  TPLHVAA  G   +A+LLLE  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 82/178 (46%), Gaps = 36/178 (20%)
Query: 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 211
           +G  EA+  L    AA  GD+  +K L    +  N  D +GR  +PLH A       +  
Sbjct: 7   LGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 212 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 64  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 329
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 336
           +L +G D  ++D     PLH A S G Y +A+LL++ GA V   D W  TPL E    G 
Sbjct: 65  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 337 KNLIKLL 343
             + KLL
Sbjct: 125 YEICKLL 131

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D           GD        
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD---------TWGD-------- 114
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N +D  G TPL  A   GH  +  +L+K GA +N  DA                    
Sbjct: 72  DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL----------------- 114
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ LI  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D++  D +G TPL  A   GH  +  +L+K GA +N                        
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN------------------------ 107
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
                  + D    TPLH+AA EG   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 108 -------AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIK 341
           L K
Sbjct: 161 LAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D G  L  A   G  D ++ +++NG D ++ D    TPLH+AA  G   + ++LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           V   D +G TPL    M G+  ++++L
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVL 99

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
           D+N  D  G TPL  A   GH  +  +L+K                              
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLK------------------------------ 101
Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
            NG D ++ D +  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 339 LIKLLE 344
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 31/123 (25%)
Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 253 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
           +N                               ++D + RTPLH+AA  G   + KLLLE
Sbjct: 61  VN-------------------------------AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 313 AGA 315
           AGA
Sbjct: 90  AGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 265 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 324
           A   G  + +K +L  G D +++D + RTPLH+AA  G   + KLLLEAGA V  KD+ G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 325 NTPLDEGRMCGNKNLIKLLEDA 346
            TPL      G+  ++KLL +A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEA 90

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
           +L  ++  AA  G   +++ L+  GAD N TD +G +PLHLA + G  +I   L++ G D
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
           +N  D  G TPL  A   GH  +  +L+K GA +N  D   +                  
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW------------------ 106
Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
                        TPLH+AA  G   + ++LL+ GA V  +D  G T  D     G ++L
Sbjct: 107 -------------TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 340 IKLLE 344
            ++L+
Sbjct: 154 AEILQ 158

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           +++AA +G   ++K L+  GAD N    DG +PLHLA   G+ +I   L+ KG D+N + 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 260
           K GNTP   A K GH  +  LL  +GA +N    GS
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 32/134 (23%)
Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
           DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH  +  LL+ +GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 253 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
           +N                               +R  D  TP H+A   G + + KLL  
Sbjct: 68  VN-------------------------------ARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 313 AGASVFTKDRWGNT 326
            GA V  +  WG++
Sbjct: 97  KGADVNARS-WGSS 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D  + L  A   G ++ +K++LS G D ++R  D  TPLH+AA  G   + KLLL  GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           V  + + GNTP    +  G+  ++KLL+
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 231 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
           LLEA + G D    +L+  GA +N +DDAG + L  A  RG  + ++ +L +G D ++RD
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 231 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
           LLEA + G D    +L+  GA +N +DDAG + L  A  RG  + ++ +L +G D ++ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 231 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
           LLEA + G D    +L+  GA +N +DDAG + L  A  RG  + ++ +L +G D ++ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 178 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 236
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 42  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 237 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 354
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Query: 355 H 355
           H
Sbjct: 222 H 222

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           D+N +D FG TPL  A   GH  +  +L+K GA +N  D
Sbjct: 72  DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 231 LLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
           LLEA + G D    +L+  GA +N   +D  + L  A   G  + ++ +L  G D ++ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
               TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 178 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 236
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 75  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 134
Query: 237 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 135 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 194
Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 354
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Query: 355 H 355
           H
Sbjct: 255 H 255

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A   G L  +  L++ GADP+  D +G S +HLA   G+  I  +LI KG D+++ D+ G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 228 NTPLLEAIKCGHD-GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
            TPL+ A    H    T LL+    S+N+ D                             
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD----------------------------- 173
Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
             Y   T LH A   G   +  LLLEAGA+V  ++  G + LD  +   N  +I  L++A
Sbjct: 174 -KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 347 E 347
Sbjct: 233 R 233

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 178 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 236
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 237 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 178 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 236
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 237 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 246 LVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 305
           LV  G+ +   D G  L  A   G  D ++ +++NG D +++D +  TPLH+AA  G   
Sbjct: 13  LVPRGSHMG-SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 306 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           + KLLLEAGA V  +D++G T  D     GN++L ++L+
Sbjct: 72  VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A  +GDL ++K  +  G D N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
            TPLL A+  GH     LL+ +GA   V   G    TA+   D+  +K +L 
Sbjct: 69  ITPLLSAVYEGHVSCVKLLLSKGADKTV--KGPDGLTALEATDNQAIKALLQ 118

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 201 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 260
           A   G +D    L+  G D+N KD++G TPL  A   GH  +  +L+K GA +N  DA  
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 261 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 320
           F                               TPLH+AA  G   +A++LL+ GA V  +
Sbjct: 81  F-------------------------------TPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 321 DRWGNTPLDEGRMCGNKNLIKLLE 344
           D++G T  D     GN++L ++L+
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQ 133

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 178 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIK 236
           K L+ A AD    D  GR+PLH A S   + +  + L  +  D++ +   G TPL+ A +
Sbjct: 39  KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 237 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 99  LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A  +GDL ++K  +  G D N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
            TPLL A+  GH     LL+ +GA   V   G    TA    D+  +K +L 
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGADKTV--KGPDGLTAFEATDNQAIKALLQ 123

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D G  L  A   G  D ++ +++NG D +++D D  TPLH+AA EG   + ++LL+AGA 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
           V  +D++G T  D     GN++L ++L+ A
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D G  L  A   G  D ++ +++NG D +++D +  TPLH+AA  G   + KLLLEAGA 
Sbjct: 5   DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           V  +D++G T  D     GN++L ++L+
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 155 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI 214
           G   A+ A+ ++ A   G    +K L+ + A PNK D  G +PL  A S G+ ++   L+
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 215 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           Q G  IN  +  GNT L EA+   H  V  LL+  GAS+ V
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA HG    +  L++ GA+    + D   PLHLA  +G+  +   L+      N KD  G
Sbjct: 93  AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           NTPL+ A   GH  + +LL++ GAS+N  +          +G+                 
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINASN---------NKGN----------------- 186
Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
                T LH A  E    + +LLL  GASV   ++   T +D      N  +++LL+
Sbjct: 187 -----TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 250 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309
           G ++   D  S L  A   G +D +  +L +G +  +R+ D   PLH+A  +G + + K 
Sbjct: 78  GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 310 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           LL++ A    KD  GNTPL      G+  L+ LL
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 29/211 (13%)
Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           +A   GD  ++  L+  GAD N  + DG + LH A      D+  FL++ G +IN  D  
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGA---SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVD 283
           G  PL  A  CG+  +   L+ +GA   ++N +             +      V   GVD
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 284 -PSSRDYDHR-------------------------TPLHVAASEGLYLMAKLLLEAGASV 317
             ++R  + R                         T LHVAA++G   + KLL++A   V
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 348
             KD  G TPL      G +   ++L +  C
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D G+    A + GD++ + R+L  G D +  + D  T LH A  +    M K L+E GA+
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 317 VFTKDRWGNTPLDEGRMCG 335
           +   D  G  PL     CG
Sbjct: 99  INQPDNEGWIPLHAAASCG 117

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
           +L  ++  AA  G   +++ L+  GA P  TD+ G SPLHLA   G+   T  L++ GV 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
            + + K   TPL  A   GH  +  +L+K GA +N                 D LK    
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA---------------KDMLK---- 100
Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
                        T LH A       + +LL++ GA V T+ ++  T  D     GN++L
Sbjct: 101 ------------MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 340 IKLLE 344
            ++L+
Sbjct: 149 AEILQ 153

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIKCG 238
           L+ AGAD N  D  GR+PLH A +     +  + L  +  ++N +   G TPL+ A +  
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 239 HDGVTSLLVKEGASLNV-DDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 296
            +G+   L+   A +N  D++G + L  A A  +++ +  +L +  +  ++D    TPL 
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 297 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           +AA EG Y  +K LL+  A+    D     P D      + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA    + +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D
Sbjct: 72  DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 231 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
           LLEA + G D    +L+  GA +N +D    + L  A      + ++ +L +G D ++ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
            D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 52/99 (52%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L   GAD N  DY G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           D+N     G TPL  A    H  +  +L+K GA +N  D
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 231 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
           LLEA + G D    +L   GA +N +D    + L  A   G  + ++ +L NG D ++  
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
              RTPLH+AA      + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
           +L V+  A  G++  L   I      N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 2   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 279
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 62  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 280 NGVDPS 285
           +G DP+
Sbjct: 122 SGADPT 127

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 277
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L  A ++G +D +K +
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 278 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 337
           L  GVD +  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 338 NLIKLLE 344
           ++ +++E
Sbjct: 147 SVQQVIE 153

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
           +L V+  A  G++  L   I      N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 20  SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 279
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 80  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 280 NGVDPS 285
           +G DP+
Sbjct: 140 SGADPT 145

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 277
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L  A ++G +D +K +
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 278 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 337
           L  GVD +  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 338 NLIKLLE 344
           ++ +++E
Sbjct: 165 SVQQVIE 171

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
           +L V+  A  G++  L   I      N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 279
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 280 NGVDPS 285
           +G DP+
Sbjct: 124 SGADPT 129

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 277
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L  A ++G +D +K +
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 278 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 337
           L  GVD +  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 338 NLIKLLE 344
           ++ +++E
Sbjct: 149 SVQQVIE 155

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
           N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+K    G+   L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 248 KEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 305
            +G+++N  D    + L  ++  G S+    +L +G + + R+ +  TPL VA+  G   
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 306 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           + K LLE GA +  +D  G T     R+ G + +IK+  +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 129 FVCHGVLGKESNLRLKQLKSDITFHI----GKHEAELALRVNSAAYHGDLYQLKGLI-RA 183
           F  H +L       L ++K  +   I         E AL    A+ H    Q+  L+ R 
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236
Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           GA+ N+ + D  +PLH+A  R + D+   L + G  +N  D  G T L  A   GH    
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC 296
Query: 244 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR 292
            LL+  G+  ++     F  TA   G+ + ++++LS      + D D+R
Sbjct: 297 RLLLSYGSDPSIISLQGF--TAAQMGN-EAVQQILSESTPMRTSDVDYR 342

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L++ GAD +  D  G  PLH A S G+ ++T  L++ G  +N  D +  TPL EA     
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Query: 240 DGVTSLLVKEGA-----------------------SLNVDDAGSFLCTAVARGDSDFLKR 276
             V SLL+  GA                        L  +  G  L  A    D   +K+
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPL 328
            L+  +    +   H T LH A +        +A+LLL  GA+V  K++   TPL
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           ++ AA HG    L+ LI  G   N    D  SPLH A   G+      L++ G  +N   
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVD 283
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 67  ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
              +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 344 ED 345
            D
Sbjct: 186 MD 187

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 142 RLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLA 201
           ++K++  D T+ + + + E    +N A ++ D+   K LI  GAD N  +    SP   A
Sbjct: 20  KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 202 TSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 260
            ++G  +I  ++++    D+N  +++G   L+ A + GH     LL+++G   ++D    
Sbjct: 80  GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 261 FLCTAV------ARGDS---DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311
           F  TA+        G+    D +K ++ NG D S +D   RT +  A  +G   ++K+L 
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 312 E 312
           +
Sbjct: 199 Q 199

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
           ++ D +G +PL++A      +I   LI +G DIN+++   ++P L A   G   + + ++
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 248 KEGA-SLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPS--SRDYDHRTPLH-VAASE 301
           K     LN  +   G+ L  A  +G  D +K +L +G +      D+ +   +  V   E
Sbjct: 93  KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152
Query: 302 GLYL---MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           G  L   + KLL+E GA    KD  G T +D     G   + K+L
Sbjct: 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A+  G++  ++ L+  GADP+    +  S L LA++ GY DI   L+++ VDINI D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCTAVARG 269
            TPLL A++  H      L+  GA L  + D+G + +  AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 32/185 (17%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 220
           +L ++  A  G+L QLK  +R G +  NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 221 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 280
           +I                       L KE  S         L  A   G +D +  +L  
Sbjct: 63  HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 281 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 340
            VD +  D++  TPL  A         + LL  GA + T+   G TP+D     G + + 
Sbjct: 92  DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 341 KLLED 345
           +++E+
Sbjct: 152 QVIEN 156

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 164 RVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 222
           R++ AA  GD+ +++ L+ R    P+  +  G++ L +    G   I L L+++G   N+
Sbjct: 11  RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 69
Query: 223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 282
           +D  G +P+ +A + G      +LV+ GA +NV D    L                    
Sbjct: 70  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL-------------------- 109
Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342
                      P+H+A  EG +      L A + +  +D  G TPL+     G ++L+ +
Sbjct: 110 -----------PIHLAVQEG-HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 157
Query: 343 LE 344
           L+
Sbjct: 158 LQ 159

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 218
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA    + +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           D+N  D  G TPL      GH  +  +L+K GA +N  D
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD 288
           LLEA + G D    +L+  GA +N +D      L  A      + ++ +L NG D ++ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
               TPLH+ A  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L++ GA PN  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVAR 268
             V S L  E + L+  DA       +AR
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELAR 147

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 201 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 259
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 260 --SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
             S +  A   G  D LK ++ +G D ++ D     P+H+A  EG   +   L    + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLLE 344
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L++ GA PN  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVAR 268
             V S L  E + L+  DA       +AR
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELAR 149

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 201 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 259
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 260 --SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
             S +  A   G  D LK ++ +G D ++ D     P+H+A  EG   +   L    + +
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLLE 344
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 164 RVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 222
           R++ AA  GD+ +++ L+ R    P+  +  G++ L +    G   I L L+++G   N+
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63
Query: 223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 282
           +D  G +P+ +A + G      +LV+ GA +NV D    L                    
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL-------------------- 103
Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342
                      P+H+A  EG +      L A + +  +D  G TPL+     G ++L+ +
Sbjct: 104 -----------PIHLAVQEG-HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 151
Query: 343 LE 344
           L+
Sbjct: 152 LQ 153

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           G DP  T++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V 
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 244 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 303
            LL++  A +N                               +  Y + +PLH AA  G 
Sbjct: 60  ELLLQHKALVN-------------------------------TTGYQNDSPLHDAAKNGH 88
Query: 304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352
             + KLLL  GAS    + +G  P+D       K+L+ L E  E +  S
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 220
           +L ++  A  G+L QLK  +R G +  NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 221 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVL 278
           +I  K   + L  A   G+  +  LL++    +N+ D   G+ L  AV       ++ +L
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 279 SNGVDPSSRDYDHRTPLHVAASEG 302
           + G D ++      TP+ +A + G
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALG 146

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 189 KTDYDGRSPLHLATSRG-----YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           + D DG +PLH+A  +G     +  + LF  Q G +++I +    TPL  A+      V 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 244 SLLVKEGAS-LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS-----RDYDHRTPLHV 297
            LLV  GAS + +D  G           S    R L +   P +     R+YD  T LHV
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 298 AASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNKNLIKLL 343
           A +       +LLLE GA +   D + G +PL       + ++++LL
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           ++ AA HG    L+ LI  G   N    D  SPLH A   G+      L++ G  +N   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVD 283
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
              +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Query: 344 ED 345
            D
Sbjct: 242 MD 243

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 136 GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 195
           GK +NLR K     I   +      LAL ++S+   G+   ++ +I    DP+  + +G 
Sbjct: 14  GKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPNDEGI 71
Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 253
           + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV+ GA++
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 252 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311
           SL  D+  + L  AV  G ++ +K ++  GV+ ++ D D  TPLH AAS     + K L+
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 312 EAGASVFT 319
           E+GA+VF 
Sbjct: 124 ESGAAVFA 131

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 209 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAV 266
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L  A 
Sbjct: 16  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 267 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 326
           + G  D ++++L    D ++ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 76  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 327 PLDEGR 332
           P+D+ +
Sbjct: 136 PVDKAK 141

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 209 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAV 266
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L  A 
Sbjct: 21  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 267 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 326
           + G  D ++++L    D ++ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 81  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 327 PLDEGR 332
           P+D+ +
Sbjct: 141 PVDKAK 146

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 136 GKESNLRLKQLKSDITFH---IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDY 192
           GK +NLR  +  S+   H   +  +   LAL ++S+   G+   ++ +I    DP+  + 
Sbjct: 12  GKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPND 68
Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
           +G + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV+ GA+
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 253 L 253
           +
Sbjct: 129 V 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVK-----EGASLNVDDAGSFLCTAVARGDSDFLKR 276
           ++ KF   PL   +    +G   L+ +     +  SL  D+  + L  AV  G ++ +K 
Sbjct: 29  MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 319
           ++  GV+ ++ D D  TPLH AAS     + K L+E+GA+VF 
Sbjct: 89  LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 189 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 245
           + D DGR PLH + S    +IT FL+ K  ++N+    D  G TP   A   G+  V   
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 246 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 301
           L        LN        C  +A G   F   + ++ NG     +D  ++ PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 302 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 328
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 189 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 245
           + D DGR PLH + S    +IT FL+ K  ++N+    D  G TP   A   G+  V   
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 246 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 301
           L        LN        C  +A G   F   + ++ NG     +D  ++ PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 302 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 328
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 189 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 245
           + D DGR PLH + S    +IT FL+ K  ++N+    D  G TP   A   G+  V   
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 246 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 301
           L        LN        C  +A G   F   + ++ NG     +D  ++ PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 302 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 328
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+R GADP     +G +P  LA   G   +    + KG D+N  D +G T  +EA   G 
Sbjct: 58  LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Query: 240 DGVTSLLVKEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSN-GVDPSS 286
                 L K GA++N+                + L  A  +G  + LK +L   G D ++
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Query: 287 RDYDHRTPL-HVAAS---EGLYLMAKLLLEAGASVFTKDRWGNTPL 328
            D   R  L H   S     +  +  LLL+ GA V  +   G TPL
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+R GADP     +G +P  LA   G   +    + KG D+N  D +G T  +EA   G 
Sbjct: 78  LLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
Query: 240 DGVTSLLVKEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSN-GVDPSS 286
                 L K GA++N+                + L  A  +G  + LK +L   G D ++
Sbjct: 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Query: 287 RDYDHRTPL-HVAAS---EGLYLMAKLLLEAGASVFTKDRWGNTPL 328
            D   R  L H   S     +  +  LLL+ GA V  +   G TPL
Sbjct: 198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 240 DGVTSLLVKEGAS 252
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           SAA  GDL QL  L++   + N  +  GR+ L +    G  +I   L+ +G + ++KD+ 
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G   + +A + G                      FL         D L+ +L N  D + 
Sbjct: 70  GFAVIHDAARAG----------------------FL---------DTLQTLLENQADVNI 98
Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
            D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L++
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 213 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGD 270
           L  +  D++ +   G TPL+ A +   +G+   L+   A +N VDD G S L  A A  +
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 330
            D    +L NG +   ++    TPL +AA EG Y  AK+LL+  A+    D     P D 
Sbjct: 61  VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 331 GRMCGNKNLIKLLED 345
            +   + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 240 DGVTSLLVKEGAS 252
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           SAA  GDL QL  L++   + N  +  GR+ L +    G  +I   L+ +G + ++KD+ 
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           GN  + +A + G                      FL         D L+ +L    D + 
Sbjct: 70  GNAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
            D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L++
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 219
           AL   ++ +   L  +   +  GAD N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 258
           +N  D  G  PL  A   GH G+  L +K GA L   D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 219
           AL   ++ +   L  +   +  GAD N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 258
           +N  D  G  PL  A   GH G+  L +K GA L   D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 219
           AL   ++ +   L  +   +  GAD N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 258
           +N  D  G  PL  A   GH G+  L +K GA L   D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 240 DGVTSLLVKEGAS 252
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           SAA  GDL QL  L++   + N  +  GR+ L +    G  +I   L+ +G + ++KD+ 
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G   + +A + G                      FL         D L+ +L    D + 
Sbjct: 70  GFAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
            D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L++
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 240 DGVTSLLVKEGAS 252
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPL-LEAI 235
           L +AGADP   +   RS LH A +    G     L   +   DI   D+ G T L + A 
Sbjct: 185 LXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAH 244
Query: 236 KCGHDGVTS--LLVKEGASLNVDDAG----------SFLCTAVARGDSDFLKRVL-SNGV 282
             G D V S  LLV++GA ++ D A           + L  A    +   +K ++   G 
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGS 304
Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342
           +   +D D +TP+ +AA EG   +   L++ GASV   D   +T     +   + N++ +
Sbjct: 305 NKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 364
Query: 343 LE 344
            +
Sbjct: 365 FD 366

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G+L  ++  ++   DP++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASL 253
            TPL  A  C    +   LV+ GA++
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDIT-LFLIQKGVDINIKDKF 226
           A  HG +  +K L+   AD N  D DG + L  A   G+++I  L L     DI++ D+ 
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 227 GNTPLLEAIKCGHDGVTSLL 246
           G+T L+ A+  G   + S+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GA+P+  D  G + +H A   G  D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 240 DGVTSLLVKEGAS 252
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT--AVARGDSDFLKRVLSNGVD 283
           FG T L + +K G+  +   L+  GA+ ++ D   F     A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 342
            +  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 343 LE 344
           ++
Sbjct: 156 MQ 157

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 31/149 (20%)
Query: 198 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           L  A +RG  +    L++ G D N  ++FG  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
             +             L R                 P+H AA EG      +L  AGA +
Sbjct: 75  PAT-------------LTR-----------------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
              D WG  P+D     G++++ + L  A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 130 VCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNK 189
           +   +LG   +  L+  + +   H+   +  LA  V           L  +++A      
Sbjct: 57  IAEALLGAGCDPELRDFRGNTPLHLACEQGCLA-SVGVLTQSCTTPHLHSILKA------ 109
Query: 190 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVK 248
           T+Y+G + LHLA+  GY  I   L+  G D+N ++   G T L  A+   +  + SLL+K
Sbjct: 110 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Query: 249 EGASLN 254
            GA +N
Sbjct: 170 CGADVN 175

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 130 VCHGVLGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNK 189
           +   +LG   +  L+  + +   H+   +  LA  V           L  +++A      
Sbjct: 60  IAEALLGAGCDPELRDFRGNTPLHLACEQGCLA-SVGVLTQSCTTPHLHSILKA------ 112
Query: 190 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVK 248
           T+Y+G + LHLA+  GY  I   L+  G D+N ++   G T L  A+   +  + SLL+K
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Query: 249 EGASLN 254
            GA +N
Sbjct: 173 CGADVN 178

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 31/158 (19%)
Query: 198 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           L  A +RG  +    L++ G + N  + +G  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
             +                                 P+H AA EG      +L  AGA +
Sbjct: 75  PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFH 355
             +D WG  P+D     G++++ + L  A        H
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-45
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-36
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-39
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-39
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-37
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-27
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-36
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-35
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-33
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-32
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-22
2rfa_A	232	Transient receptor potential cation channel subfa	7e-32
2rfa_A	232	Transient receptor potential cation channel subfa	2e-28
2rfa_A	232	Transient receptor potential cation channel subfa	5e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	2e-26
2pnn_A	273	Transient receptor potential cation channel subfa	1e-23
2pnn_A	273	Transient receptor potential cation channel subfa	4e-20
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
2etb_A	256	Transient receptor potential cation channel subfam	5e-25
2etb_A	256	Transient receptor potential cation channel subfam	3e-24
2etb_A	256	Transient receptor potential cation channel subfam	6e-23
2etb_A	256	Transient receptor potential cation channel subfam	5e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-05
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	4e-19
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	5e-19
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	4e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	8e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-12
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	7e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-08
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	3e-09
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	3e-09
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	1e-07
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	3e-06
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	2e-06
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	2e-06
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-06
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	8e-06
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	4e-06
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	5e-06
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	6e-06
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	1e-05
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	1e-05
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	7e-04
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	3e-05
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-04
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	3e-05
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	5e-05
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	5e-05
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	2e-04
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	6e-05
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	7e-05
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	8e-05
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	8e-05
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	1e-04
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	1e-04
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	2e-04
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	3e-04
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	3e-04
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	3e-04
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	5e-04
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	7e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  161 bits (410), Expect = 4e-45
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 2/179 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA    +   + L++ G   N     G +PLHLA   G+ ++   L+ K  + N+ +K G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL    + GH  V  +L+K G  ++      +  L  A   G+   +K +L +  D +
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           ++     +PLH AA +G   +  LLL+ GAS       G TPL   +  G  ++  +L+
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (406), Expect = 1e-44
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A++ G L  +K L++ GA PN ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A + GH  +  LL++  A+ N+        L  A   G  + +  +L      +
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                  TPLHVAA  G   +A+LLLE  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  158 bits (403), Expect = 4e-44
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A +H +L  +K L+  G  P+   ++G +PLH+A  +   ++   L+Q G   N +   G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A + GH  + +LL+ + A+ N+ +      L      G       ++ +GV   
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +      TPLHVA+  G   + K LL+  A V  K + G +PL +    G+ +++ LL
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  156 bits (398), Expect = 2e-43
 Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 2/178 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +G +   + L+   A PN    +G +PLH+A      DI   L+ +G   +     G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A K     V   L++ G S N +       L  A   G ++ +  +LS   + +
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
             +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K L
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  152 bits (386), Expect = 9e-42
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 2/178 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   K G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A+   +  +  LL+  G S +      +  L  A  +   +  + +L  G   +
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +L
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (377), Expect = 2e-40
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 2/162 (1%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           G         G +PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 244 SLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 301
             L++  A +N         L  A   G ++ +K +L N  +P+       TPLH+AA E
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 302 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           G       LLE  AS     + G TPL      G   + +LL
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  142 bits (361), Expect = 3e-38
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 5/167 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G    +  L+   A+ N  +  G +PLHL    G+  +   LI+ GV ++   + G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A   G+  +   L++  A +N     G   L  A  +G +D +  +L NG  P+
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNTPLD 329
               D  TPL +A   G   +  +L    +  + V   D+   +  +
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  107 bits (269), Expect = 1e-25
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 216 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDF 273
            G+      + G TPL  A   GH  +   L++ GAS NV +      L  A   G ++ 
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 274 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 333
            K +L N    +++  D +TPLH AA  G   M KLLLE  A+       G+TPL     
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 334 CGNKNLIKLL 343
            G+   +  L
Sbjct: 123 EGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 21/65 (32%), Positives = 28/65 (43%)

Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
           S G+          TPLHVA+  G   + K LL+ GAS    +    TPL      G+  
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 339 LIKLL 343
           + K L
Sbjct: 62  VAKYL 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  156 bits (398), Expect = 6e-45
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA HG    L+ LI  G   N    D  SPLH A   G+      L++ G  +N      
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRVLSNGVDPSS 286
           +TPL  A   G     +LL++ GAS+  +   +  +  A  RG  + +  +++ G +   
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  129 bits (327), Expect = 1e-34
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 3/151 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A   G    +  L++ GA       D  SP+H A  RG+ +    LI  G +I+ K    
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSS 286
            TPL  A +         L++ GA +N      S L   V     +    ++  G D  +
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
           ++ + + P+ +   E   L    L   GAS+
Sbjct: 251 KNAEGKRPVELVPPES-PLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  129 bits (327), Expect = 1e-34
 Identities = 47/209 (22%), Positives = 70/209 (33%), Gaps = 34/209 (16%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTD-------------------------------YDGRS 196
            + H   +   GL+  G+     D                                   S
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 256
           P+H A   G++     LI +G  +NI      +PL EA   GH     +L+K GA +N  
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 257 DAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 314
            A     L  A   G  D +  +L +G        D  +P+H AA  G       L+  G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180

Query: 315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            ++  K     TPL        +  +K L
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 97.6 bits (244), Expect = 4e-23
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 10/149 (6%)

Query: 200 LATSRGYEDITLFLIQKGVDINIKDKF-----GNTPLLEAIKCGHDGVTSLLVKEGASLN 254
           + +S  +   +  L+ +G  +   D       G+ P       G       L+      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 255 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 314
                S +  A   G    L+ ++S G   +    DH +PLH A   G     K+LL+ G
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           A V       +TPL    + G+ + + LL
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 89.1 bits (222), Expect = 4e-20
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A  +     +K L+ +GAD N+      SPLH       E++   L+  G D   K+  G
Sbjct: 197 ACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLN 254
             P+              L +EGASL 
Sbjct: 256 KRPVELVPPESPL-AQLFLEREGASLP 281

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  147 bits (374), Expect = 9e-43
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 168 AAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
            A  G+L QLK  +R G +  NK D  G +PL  A++ G  +   FL++ G D +I  K 
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
             + L  A   G+  +  LL++    +N+ D      L  AV       ++ +L+ G D 
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 327
           ++      TP+ +A + G   + +++      +F  +     P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  121 bits (307), Expect = 4e-33
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 3/156 (1%)

Query: 194 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
               +H   ++G  D     ++KG + +N  D+ G TPL+ A   G       L++ GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 253 LNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310
            ++        L  A   G +D +  +L   VD +  D++  TPL  A         + L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
           L  GA + T+   G TP+D     G + + +++E+ 
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  142 bits (362), Expect = 3e-40
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 5/180 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G +     L++AGA+ +    D R+PL  A    + +   +LI+ G  ++ KD  G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT----AVARGDSDFLKRVLSNGVD 283
           +T L  A K GH  V   L+  G   +V+       T    A      D +K +LS G D
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            + RD +    LH AA  G   +A++LL A   +   +  G++PL         + + L 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (334), Expect = 3e-36
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 185 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 244
            +      + RSPLH A   G+ DI   L+Q G +I+   +   TPL+EA +  H     
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 245 LLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASE 301
            L+K GA ++  DA     L  A  +G  + ++ +LSNG +D + +D    TP+  A   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 302 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
               + KLLL  G+ +  +D   N  L      G  ++ ++L
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  128 bits (324), Expect = 1e-34
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 32/177 (18%)

Query: 168 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           AA  G    ++ L+  G  D N  D  G +P+  AT   + D+   L+ KG DINI+D  
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
            N  L  A   G   +  +L                               L+   D  +
Sbjct: 144 ENICLHWAAFSGCVDIAEIL-------------------------------LAAKCDLHA 172

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            +    +PLH+AA E  Y    L L   + V  K++ G TPL    +         +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  109 bits (274), Expect = 1e-27
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 31/148 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A  +  +  +K L+  G+D N  D +    LH A   G  DI   L+    D++  +  G
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           ++PL  A +        L                                LS   D + +
Sbjct: 178 DSPLHIAARENRYDCVVLF-------------------------------LSRDSDVTLK 206

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           + +  TPL  A+       A  + +A  
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  142 bits (360), Expect = 6e-40
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 5/181 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-F 226
           A  +G   + + L+ AG D  + D +  + LH A      D+  + I KG  ++      
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
            +TPL  A + GH  +   L+K GA  ++ D      +  A   G +  +  +++ G D 
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 285 SSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRW-GNTPLDEGRMCGNKNLIKL 342
              D +  TPL  AA     +   +LLL    SV   D++  NT L    + GN  +I L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

Query: 343 L 343
           L
Sbjct: 196 L 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  137 bits (347), Expect = 5e-38
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A   G L  +  L++ GADP+  D +G S +HLA   G+  I  +LI KG D+++ D+ G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 228 NTPLLEAIKCGHDG-VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
            TPL+ A    H    T LL+    S+N+ D                             
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD----------------------------- 173

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
             Y   T LH A   G   +  LLLEAGA+V  ++  G + LD  +   N  +I  L++A
Sbjct: 174 -KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 347 E 347
            
Sbjct: 233 R 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (323), Expect = 1e-34
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 3/144 (2%)

Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
              D      +  AT  G  +    L++ G D+   DK   T L  A       +    +
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 248 KEGASLNV--DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 304
            +GA ++    D  S  L  A  +G    + +++  G DPS  D +  + +H+AA  G  
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122

Query: 305 LMAKLLLEAGASVFTKDRWGNTPL 328
            +   L+  G  V   D+ G TPL
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 88.6 bits (221), Expect = 2e-20
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRV 277
           +   D +    +++A + G       LV+ G  +   D  +   L  A      D +K  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 278 LSNGVDPSSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 336
           +S G        D   TPLH A  +G   M   L++ GA     D  G + +      G+
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 337 KNLIKLL 343
            +++  L
Sbjct: 122 TSIVAYL 128

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  140 bits (355), Expect = 1e-39
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A         + L       ++ D +G +PL++A      +I   LI +G DIN+++   
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCTAVARGDSDFLKRVLSNG-V 282
           ++P L A   G   + + ++K     +++    +    L  A  +G  D +K +L +G  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATP-DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 283 DPSSRDYDHRTPLHVAASEGLYL-----MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 337
           D   ++    T L  A            + KLL+E GA    KD  G T +D     G  
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 338 NLIKLL 343
            + K+L
Sbjct: 192 EISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  119 bits (302), Expect = 5e-32
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 4/142 (2%)

Query: 191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 250
            Y+  + L  A  R  + +   L      ++  D  GNTPL  A+      +   L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 251 ASLNVDDAGSF--LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLMA 307
           A +N+ ++ S      A A+G ++ L  +L +   D +  +      L  AA +G     
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 308 KLLLEAG-ASVFTKDRWGNTPL 328
           KLLLE G   +  ++ +G T L
Sbjct: 123 KLLLEDGREDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.0 bits (240), Expect = 3e-23
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 38/152 (25%)

Query: 168 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDK 225
           A   G    L  +++    D NK +  G + L  A  +G+ D    L++ G  DI+ ++ 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

Query: 226 FGNTPLLEAIKC-----GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 280
           FG T L+EA+        +  +  LL                               + N
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLL-------------------------------MEN 167

Query: 281 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
           G D S +D   RT +  A  +G   ++K+L +
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLS 279
           +K       L  A +     V  +L      ++  D      L  AV   D +  K ++ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 338
            G D + ++    +P   A ++G   +   +L+     +   +R+G   L      G+ +
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 339 LIKLL 343
            +KLL
Sbjct: 121 NVKLL 125

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  138 bits (351), Expect = 2e-39
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 2/157 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
            A  G++  L   I      N TD +G +PL  A + G   +  FL+Q G D  +  K  
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            + L  A   G+  +  +L+  G  +N  D      L  AV       +K +L +G DP+
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322
                    + +A + G   + +++      +    +
Sbjct: 130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  129 bits (326), Expect = 8e-36
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 2/156 (1%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
                +H   ++G        I++   IN  D+ G TPL+ A   G   V   L++ GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 253 LNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310
             +   G    L  A ++G +D +K +L  GVD +  D++  TPL  A         K+L
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
           LE+GA    +   G   +D     G +++ +++E  
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  141 bits (359), Expect = 4e-39
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A    ++  +K L+  GA+ N+ D +G  PLH A S GY DI  +LI +G  +   +  G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           +TPL  A +   + +    V     ++++ A             D  + + S  ++    
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQG-VDIEAA---RKEEERIMLRDARQWLNSGHINDVRH 195

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                T LHVAA++G   + KLL++A   V  KD  G TPL      G +   ++L
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  133 bits (337), Expect = 6e-36
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 8/178 (4%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A   GD  ++  L+  GAD N  + DG + LH A      D+  FL++ G +IN  D  G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
             PL  A  CG+  +   L+ +GA +   ++     L  A      + L+  ++      
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ---- 162

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
               D            L    + L     +     + G T L      G   ++KLL
Sbjct: 163 --GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (314), Expect = 1e-32
 Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 10/183 (5%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKF 226
           AA  G L   + LI  GA     + +G +PL +A     E++    + ++GVDI    K 
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
                              L     +           L  A A+G ++ LK ++    D 
Sbjct: 173 EERI-------MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           + +DYD  TPLH AA  G     ++L+E    +   ++ G T  D         L +L +
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

Query: 345 DAE 347
              
Sbjct: 286 KQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  121 bits (305), Expect = 2e-31
 Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 32/176 (18%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
             + G    L+  +           DG      A S G  +  L L+++G DIN  +  G
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            T L +A    +  +   LV+ GA++N                                 
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANIN-------------------------------QP 102

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           D +   PLH AAS G   +A+ L+  GA V   +  G+TPLD       + L++  
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  110 bits (277), Expect = 2e-27
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 35/174 (20%)

Query: 150 ITFHIGKHEAEL--ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE 207
           +   + +   ++  A +        D  Q   L     +  +    G + LH+A ++GY 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 208 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA 267
           ++   LIQ   D+NIKD  G TPL  A   G +    +L                     
Sbjct: 213 EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL--------------------- 251

Query: 268 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 321
                     + N  D  + +   +T   VA  + L  + +L  +       K 
Sbjct: 252 ----------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  100 bits (252), Expect = 4e-24
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCTAVARGDSDFLKRVL 278
           + + D             G +      V +     V  D G+    A + GD++ + R+L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 338
             G D +  + D  T LH A  +    M K L+E GA++   D  G  PL     CG  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120

Query: 339 LIKLL 343
           + + L
Sbjct: 121 IAEYL 125

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  139 bits (354), Expect = 5e-39
 Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 11/187 (5%)

Query: 168 AAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 223
           A   G+L      +    + G + +  +   ++PLHLA       +   L+  G      
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 224 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSF-----LCTAVARGDSDFLKRV 277
           D+ G T    A +         L+   A   +D +A ++     L  AV     + ++ +
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 278 LSNGVDPSSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 336
           L  G D  + D    R+PL  A       M +LLL+ GA+V  +   G++ L      G 
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195

Query: 337 KNLIKLL 343
             L++ L
Sbjct: 196 LPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  126 bits (319), Expect = 5e-34
 Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 36/181 (19%)

Query: 168 AAYHGDLYQLKGLIRAGA----DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 223
           A  H     L+ L+ + A    D    +YDG + LH+A +   ++    L+++G DI+  
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 224 D-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 282
           D K G +PL+ A++     +  LL++ GA++N                            
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVN---------------------------- 177

Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342
              ++ Y   + LH A+  GL  + + L+ +GA    K+   +TPL   R     ++++ 
Sbjct: 178 ---AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 343 L 343
            
Sbjct: 235 K 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (308), Expect = 2e-32
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
            + D DG +PLH+A  +G       L+    Q G +++I +    TPL  A+      V 
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62

Query: 244 SLLVKEGASLNV-DDAG-SFLCTAVARGDSDFLKRVLSNG----VDPSSRDYDHRTPLHV 297
            LLV  GAS    D  G +    A        L+ +L +     +D  +R+YD  T LHV
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 298 AASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLL 343
           A +       +LLLE GA +   D   G +PL       + ++++LL
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  107 bits (270), Expect = 5e-27
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 32/150 (21%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           A        ++ L+  GAD +  D   GRSPL  A       +   L+Q G ++N +   
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G++ L  A   G   +   L                               + +G D S 
Sbjct: 183 GSSALHSASGRGLLPLVRTL-------------------------------VRSGADSSL 211

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           ++  + TPL VA S  +  + +      AS
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.7 bits (203), Expect = 7e-18
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLV----KEGASLNVDDAGSF--LCTAVARGDSDF 273
               D+ G+TPL  A+  G+      LV    + G  L++ +      L  AV       
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 274 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT----KDRWGNTPLD 329
           ++ +++ G  P + D   +T  H+A         + LL++ A        ++  G T L 
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 330 EGRMCGNKNLIKLL 343
                  +  ++LL
Sbjct: 122 VAVNTECQETVQLL 135

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  139 bits (352), Expect = 6e-39
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 3/179 (1%)

Query: 168 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
            AY G L +L + ++   +   +TD D R+ LH A S G+ +I  FL+Q GV +N KD  
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
           G +PL  A   G D +   L+ +GA +N  +      L  A ++   +    +L  G +P
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL            K L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  129 bits (325), Expect = 4e-35
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A   G    ++ L++ G   N  D  G SPLH+A S G ++I   L+ KG  +N  ++ G
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A       +  +L++ GA+ +  D      +  A A+G+   +  +L      +
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            +D +  TPLH+A  E     AK L+  GAS++ +++   TPL   +  G   LI   
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  115 bits (289), Expect = 5e-30
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
                 +LA S   +++   ++         D+   T L  A   GH  +   L++ G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 253 LNV-DDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310
           +N  DDAG S L  A + G  + +K +L  G   ++ + +  TPLH AAS+  + +A +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           LE GA+   KD +  T +      GN  ++ +L
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  106 bits (267), Expect = 6e-27
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G    +K L+  GA  N  + +G +PLH A S+   +I + L++ G + + KD + 
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            T +  A   G+  +  +L+   AS N+ D      L  A      +  K +++ G    
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
             + + +TPL VA   G   +    L  G   
Sbjct: 200 IENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 82.2 bits (203), Expect = 4e-18
 Identities = 30/120 (25%), Positives = 53/120 (44%)

Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           ++ AA          L+  GA+P+  D+   + +H A ++G   +   L+      NI+D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDP 284
             GNTPL  A           LV +GAS+ +++        VA+G    + + L+ G + 
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 165 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           ++ AA  G+L  +  L+   A  N  D +G +PLHLA      +   FL+ +G  I I++
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           K   TPL  A   G  G+    + EG   ++
Sbjct: 203 KEEKTPLQVA--KGGLGLILKRLAEGEEASM 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  140 bits (356), Expect = 7e-39
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 20/196 (10%)

Query: 168 AAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           A  H     L  L+   A     +  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----------------LCTAVAR 268
           + G+T L  A +        +L++   S   D + ++                   +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTP 327
            +++   R     +   + +YD  TPLHVA       M +LL +AGA +   +   G TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 328 LDEGRMCGNKNLIKLL 343
           L         ++++LL
Sbjct: 196 LHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  126 bits (320), Expect = 1e-33
 Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 38/200 (19%)

Query: 132 HGV-LGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKT 190
                 ++++        D T       A +      +  + +  +              
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD-----SQPNPENEEEPRDEDWRLQLEAE 154

Query: 191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHDGVTSLLVKE 249
           +YDG +PLH+A      ++   L   G D+N  +   G TPL  A++     V  LL   
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL--- 211

Query: 250 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309
                                       L  G DP++R Y  RTPL  A      ++A+L
Sbjct: 212 ----------------------------LKAGADPTARMYGGRTPLGSALLRPNPILARL 243

Query: 310 LLEAGASVFTKDRWGNTPLD 329
           L   GA          +P  
Sbjct: 244 LRAHGAPEPEDGGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (260), Expect = 3e-25
 Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 32/146 (21%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           A  H D   ++ L  AGAD NK +   GR+PLHLA       +   L++ G D   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G TPL  A+   +  +  LL                                ++G     
Sbjct: 225 GRTPLGSALLRPNPILARLL-------------------------------RAHGAPEPE 253

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLE 312
              D  +P   + S+          E
Sbjct: 254 DGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =   99 bits (250), Expect = 6e-24
 Identities = 24/163 (14%), Positives = 42/163 (25%), Gaps = 34/163 (20%)

Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVTS 244
                DG + LHLA    +E    FL+        +++++  G T L  A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 245 LLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 304
            L                                + G      +    T LH+A     +
Sbjct: 63  KL-------------------------------YAAGAGVLVAERGGHTALHLACRVRAH 91

Query: 305 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347
             A +LL+   S             +       +    ++   
Sbjct: 92  TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  139 bits (354), Expect = 2e-38
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 17/193 (8%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A        ++ L+R GADP     +G +P  LA   G   +    + KG D+N  D +G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF------------LCTAVARGDSDFLK 275
            T  +EA   G       L K GA++N+                  L  A  +G  + LK
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 276 RVLSN-GVDPSSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASVFTKDRWGNTPLDE 330
            +L   G D ++ D   R  L  A        +  +  LLL+ GA V  +   G TPL  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 331 GRMCGNKNLIKLL 343
                +  L++ L
Sbjct: 226 AVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (268), Expect = 2e-26
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 32/154 (20%)

Query: 191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHDGVTSLLVKE 249
             +    L  A      D+   L++ G ++N +++  G TPL  A++   + +  LL   
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL--- 58

Query: 250 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309
                                       L +G DP  R  +  TP  +AA  G   + KL
Sbjct: 59  ----------------------------LRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 310 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            L  GA V   D +G T   E  + G    +K L
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  104 bits (263), Expect = 1e-25
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 37/160 (23%)

Query: 168 AAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINI 222
           AA  G +  LK L+   GAD N  D  GR+ L  A         E IT  L+  G D+N+
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 223 KDKFGNTPLLEAIKCGHDGVTS-LLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 281
           + + G TPL+ A++  H G+   LL +E   +N                           
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--------------------------- 247

Query: 282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 321
                 D D +T L +A    L  +A+LL + GAS    D
Sbjct: 248 ----DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  141 bits (357), Expect = 3e-38
 Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 23/181 (12%)

Query: 168 AAYHGDLYQLKGLI-----RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 222
           A    +   L  ++     ++    +  +  G S LH A    +ED+ +  ++ G+D+N+
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

Query: 223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 282
           +D     PL  +++     +T  L+++     +                        NG 
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP------------------YHNGT 281

Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342
                       +  AA      + +LL E    V      G     + +      + ++
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341

Query: 343 L 343
            
Sbjct: 342 K 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  120 bits (304), Expect = 9e-31
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 35/193 (18%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
                 +  K+D +    +H+A  +G  D    LI+ GV   I+++FG T L  A K G 
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC 65

Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
                 L   G   ++      +  AV    +D +  ++    +        + P  +  
Sbjct: 66  VDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLN 119

Query: 300 SEGLYLMAKL-----------------------------LLEAGASVFTKDRWGNTPLDE 330
                 + ++                             L++ GAS   KD+   TPL  
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179

Query: 331 GRMCGNKNLIKLL 343
                N+  + L+
Sbjct: 180 AMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  120 bits (303), Expect = 1e-30
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 22/183 (12%)

Query: 183 AGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240
                +     G++ LH     G  Y ++   L+Q G     KDK   TPL+ A++  + 
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 241 GVTSLLV-----KEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT 293
               L++     K    L+  +  G+  L  A+     D   R +  G+D +  D +H  
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV 246

Query: 294 PLHVAASEGLYLMAKLLLEAGAS-------------VFTKDRWGNTPLDEGRMCGNKNLI 340
           PL+++    + L+ K LL+                 V          +        + ++
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 341 KLL 343
           +LL
Sbjct: 307 QLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.5 bits (215), Expect = 8e-19
 Identities = 8/74 (10%), Positives = 20/74 (27%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           G             +  A     +++   L +K  ++      G    ++  K     V 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 244 SLLVKEGASLNVDD 257
            + +   A +    
Sbjct: 340 RMKLAPSAPVRTRS 353

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.7 bits (187), Expect = 4e-15
 Identities = 5/64 (7%), Positives = 15/64 (23%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA       L+ L     +  ++   G         +    +    +     +  + +  
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 228 NTPL 231
               
Sbjct: 357 ARSS 360

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  133 bits (337), Expect = 7e-38
 Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           G DP   ++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 244 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 303
            LL++  A +N                                  Y + +PLH AA  G 
Sbjct: 60  ELLLQHKALVNT-------------------------------TGYQNDSPLHDAAKNGH 88

Query: 304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
             + KLLL  GAS    + +G  P+D       K+L+ L E
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  115 bits (290), Expect = 4e-31
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 31/149 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A+  GD+  ++ L++ G+DPN  D+ G +PLH A + G+  +   L+Q    +N      
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           ++PL +A K GH  +  LL                               LS G   ++ 
Sbjct: 77  DSPLHDAAKNGHVDIVKLL-------------------------------LSYGASRNAV 105

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           +     P+     E +  +  L  +  +S
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  135 bits (342), Expect = 2e-37
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 180 LIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238
            I  GA   N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

Query: 239 HDGVTSLLVKEGASLNVDDAGSF----LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
             GV  +L++  A+ ++D         L  A        L+ ++++  D ++ D   ++ 
Sbjct: 70  AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  124 bits (315), Expect = 1e-33
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 32/177 (18%)

Query: 168 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           A         + LIR  A D +   +DG +PL LA     E +   LI    D+N  D  
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G + L  A    +     +L                               L NG +   
Sbjct: 125 GKSALHWAAAVNNVDAAVVL-------------------------------LKNGANKDM 153

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  112 bits (283), Expect = 5e-29
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 31/154 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA       L+ LI + AD N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL  A + G      +L                               L +  +    
Sbjct: 159 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 187

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 321
           D+  R P  +A     + + +LL E       + 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 94.4 bits (236), Expect = 1e-22
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 4/143 (2%)

Query: 205 GYEDITLFLIQKGVDI-NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-- 261
               +    I +G  + N  D+ G T L  A +         L++  A  N+ D      
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 262 LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 320
           L  AV+       + ++ N   D  +R +D  TPL +AA   +  M + L+ + A V   
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 321 DRWGNTPLDEGRMCGNKNLIKLL 343
           D  G + L       N +   +L
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 89.0 bits (222), Expect = 1e-20
 Identities = 19/92 (20%), Positives = 35/92 (38%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA   ++     L++ GA+ +  +    +PL LA   G  +    L+    + +I D   
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 259
             P   A +  H  +  LL +     +    G
Sbjct: 192 RLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  133 bits (337), Expect = 3e-37
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 32/177 (18%)

Query: 168 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
               G+   ++  +     D N+ D  G SPLH A   G   +   LI +G  IN+ ++ 
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
            +TPL  A   GH  +   L                               L    D ++
Sbjct: 72  DDTPLHLAASHGHRDIVQKL-------------------------------LQYKADINA 100

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            +     PLH A   G   +A+ L+  GA V   +++G  P+D+ +    + L +  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  115 bits (292), Expect = 8e-31
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 31/150 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A   G    ++ LI  GA  N  +    +PLHLA S G+ DI   L+Q   DIN  ++ G
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           N PL  A   G D V   L                               ++NG   S  
Sbjct: 106 NVPLHYACFWGQDQVAEDL-------------------------------VANGALVSIC 134

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
           +     P+  A +    L+ +   + G ++
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  136 bits (344), Expect = 3e-37
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 10/179 (5%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA   D   +K L+ +G D ++ D  G + L+ A   G        ++K   +    K G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 228 -NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRVLSNGVDPS 285
             T    A+      + S  + E  S          +   +  G  D +  +L      +
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 286 SRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           + +     P + +A       M + L +   ++        +   E  +  +  + K++
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  135 bits (342), Expect = 8e-37
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 7/180 (3%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A    ++  +  L+ AGA  N    +   PLH A +     I   L+  G+D +  D  G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
           NT L  A+  G+     L VK+   L      G       AV   D   +   LS     
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLL 343
                   + +H+    G   M  LLL+   S  T +     P +       +  +++ L
Sbjct: 156 -FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  127 bits (322), Expect = 6e-34
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           S        QLK  +    D  K D  G S  + A +     +   L+  G   N+ +  
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
              PL +A       +  +L+  G   +  D      L  AV  G+   +K  +      
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 285 SSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                   +T  + A       +    L    S         + +      G+ +++ LL
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (298), Expect = 1e-30
 Identities = 21/165 (12%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDG-RSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           A   G++  +K  ++           G ++  + A       I  + + +          
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAI 160

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCTAVARGDSDFLKRVLSNGVD 283
             + +   IK GH  +  LL+    S N +++  F   +  A+   D + L+ +    ++
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

Query: 284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 328
                    +            +AK+++E      +     +  +
Sbjct: 221 IY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  100 bits (252), Expect = 3e-24
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A    D+  +   +              S +H+    G+ D+ + L+      N  +   
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 228 NTPLL-EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
             P +  AI      +   L K     N+  A       V   D++  K ++   V+  S
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYDI--NIYSA---NLENVLLDDAEIAKMIIEKHVEYKS 249

Query: 287 RDYDHRTPLHVAA 299
             Y     +    
Sbjct: 250 DSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 7/81 (8%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A  + D+  L+ L +   +         S           +I   +I+K V+        
Sbjct: 202 AIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK 254

Query: 228 NTPLLEAIKCGHDGVTSLLVK 248
           +  +++  K       +  ++
Sbjct: 255 DLDIVKNNKLDEIISKNKELR 275

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  134 bits (341), Expect = 6e-37
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 180 LIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238
            I  GA   N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

Query: 239 HDGVTSLLVKEGASLNVDDAGSF----LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 294
             GV  +L++  A+ ++D         L  A        L+ ++++  D ++ D   ++ 
Sbjct: 102 AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160

Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  126 bits (318), Expect = 9e-34
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 32/177 (18%)

Query: 168 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           A         + LIR  A D +   +DG +PL LA     E +   LI    D+N  D  
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G + L  A    +     +L                               L NG +   
Sbjct: 157 GKSALHWAAAVNNVDAAVVL-------------------------------LKNGANKDM 185

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  112 bits (284), Expect = 6e-29
 Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 186 DPNKTDYDGRSPLHLATSRG-------------YEDITLFLIQKGVDI-NIKDKFGNTPL 231
           D N    DG +PL +A+  G                +    I +G  + N  D+ G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 232 LEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCTAVARGDSDFLKRVLSNG-VDPSSRD 288
             A +         L++  A  N+ D+ G + L  AV+       + ++ N   D  +R 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +D  TPL +AA   +  M + L+ + A V   D  G + L       N +   +L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  108 bits (273), Expect = 2e-27
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 31/148 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA       L+ LI + AD N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL  A + G      +L                               L +  +    
Sbjct: 191 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 219

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           D+  R P  +A     + + +LL     
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 88.7 bits (221), Expect = 3e-20
 Identities = 19/87 (21%), Positives = 34/87 (39%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA   ++     L++ GA+ +  +    +PL LA   G  +    L+    + +I D   
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 223

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLN 254
             P   A +  H  +  LL  E    +
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 23/146 (15%)

Query: 218 VDINIKDKFGNTPLLEAIKCGHDG-------------VTSLLVKEGASLN--VDDAGSFL 262
           +D+N++   G TPL+ A   G                V S  + +GASL+   D  G   
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTG--- 57

Query: 263 CT----AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-V 317
            T    A     SD  KR+L    D + +D   RTPLH A S     + ++L+   A+ +
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLL 343
             +   G TPL        + +++ L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.3 bits (150), Expect = 6e-11
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 223
           AA  G     K L+   A+ + TD+  R P  +A  R + DI   L  +    +  
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  137 bits (347), Expect = 6e-37
 Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 7/189 (3%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238
           L    A    T    +  L  A   G  E +   L    V+ +  D   +TPL  A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 239 HDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 296
              +  LL++ GA ++  D G    L  A + G  +  + +L +G   ++ D    TPLH
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 297 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHY 356
            AAS+    +  LLL  GA     +  G + +D       +  +           S    
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH----SLLQA 185

Query: 357 CSQGMIDKM 365
             +  + K+
Sbjct: 186 AREADLAKV 194

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  133 bits (338), Expect = 1e-35
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 29/204 (14%)

Query: 168 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           AA  G+  +L   L     + + +D    +PLHLA       I   L+Q G D++ KDK 
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
           G  PL  A   GH  VT LL+K GA +N  D   F  L  A ++   +    +LS+G DP
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 285 SSRDYDHRTPLHVAASEGL-----YL----------------MAKLLLEAGASVFTKDRW 323
           +  +   ++ + +A +  L     Y                   K  L      F + + 
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210

Query: 324 GNTPL----DEGRMCGNKNLIKLL 343
             T L            K + +LL
Sbjct: 211 HETALHCAVASLH-PKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  119 bits (300), Expect = 3e-30
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA    +     L+  GADP   +  G+S + +A +    +   +  +           G
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK-----------G 179

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCTAVARGDSDFLKRV---LSNGVD 283
           ++ L  A +     V   L  E  +     +  + L  AVA       +     L  G +
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239

Query: 284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            + ++ D  TPLHVAA      + ++L + GA +   D  G T L    + G+    +LL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (294), Expect = 2e-29
 Identities = 38/172 (22%), Positives = 56/172 (32%), Gaps = 41/172 (23%)

Query: 168 AAYHGDLYQL---KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           A       +    + L+R GA+ N+ + D  +PLH+A  R + D+   L + G  +N  D
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDP 284
             G T L  A   GH     LL                               LS G DP
Sbjct: 278 SLGQTALHRAALAGHLQTCRLL-------------------------------LSYGSDP 306

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 336
           S       T   +          + +L     + T D   +  L E    G+
Sbjct: 307 SIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  105 bits (264), Expect = 2e-25
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGA 251
            G+S L L                     +  ++    LLEA + G+ + + +LL     
Sbjct: 3   FGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 252 SLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309
           + +  D      L  A        ++ +L +G D  ++D     PLH A S G Y + +L
Sbjct: 50  NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

Query: 310 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           LL+ GA V   D W  TPL E        +  LL
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  136 bits (345), Expect = 2e-36
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 17/193 (8%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK---GVDINIKD 224
           A        +  L++AGADP   +   RS LH A +     + ++++       DI   D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 225 KFGNTPLLEAIKCGHDGVTS---LLVKEGASLNVDDAGSF----------LCTAVARGDS 271
           + G T L+           +   LLV++GA ++ D A             L  A    + 
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 272 DFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 330
             +K ++   G +   +D D +TP+ +AA EG   +   L++ GASV   D   +T    
Sbjct: 293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

Query: 331 GRMCGNKNLIKLL 343
            +   + N++ + 
Sbjct: 353 AQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  128 bits (323), Expect = 2e-33
 Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 25/201 (12%)

Query: 168 AAYHGDL--------YQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
            A +           ++ K  I AGAD N  D D  +PL LA       +  +L++ G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLV---KEGASLNVDDAGSF--LCTAVARGDSDFL 274
             I +K   + L +A      G+   ++   K    +   D      L         D +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 275 KRV---LSNGVD--------PSSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDR 322
                 +  G            S  Y  RT LH AA      + K L+ E G++   +D 
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 323 WGNTPLDEGRMCGNKNLIKLL 343
            G TP+      G   ++  L
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  121 bits (307), Expect = 4e-31
 Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ 215
           +H +           +G+ +           P + + +    LH   + G   IT  + +
Sbjct: 58  QHYSLYPN--PQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITR 114

Query: 216 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK 275
           + V+I    +   T L           +  L+   A                       K
Sbjct: 115 ESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA-----------------------K 150

Query: 276 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 335
             ++ G D ++ D D  TPL +A       +   L++AGA     ++   + L +     
Sbjct: 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 210

Query: 336 NKNLIKLL 343
           +  ++  +
Sbjct: 211 DFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  100 bits (252), Expect = 1e-23
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 43/160 (26%)

Query: 168 AAYHGDLYQL---KGLIRAGADPNKT--------DYDGRSPLHLATSRGYEDITLFLI-Q 215
            A++    Q+   K L+  GA  +           Y GR+ LH A       I  +L+ +
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 216 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK 275
           KG + + +D+ G TP++ A + G   V   L                             
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL----------------------------- 332

Query: 276 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
             +  G    + D    T   +A +   + +  +      
Sbjct: 333 --IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 87.3 bits (217), Expect = 5e-19
 Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 21/170 (12%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
               +++    +  L  A+  GY              N    +   P  +    G+D + 
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 244 SLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 301
                        +  S   L T  A G     + +    V+     ++ RT LH  AS 
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPRHN-RTVLHWIASN 135

Query: 302 G--------LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                    +   AK  + AGA V   D   NTPL    +   + L+  L
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 215 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL 274
           +K    +         LLEA   G+       ++  +                 G+    
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-------NPQGYGNGNDFLG 77

Query: 275 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 334
               +N   P+  + +    LH  A+ G Y + + +     ++    R   T L      
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASN 135

Query: 335 GNKNLIKLL 343
            +    + L
Sbjct: 136 SSAEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 220
           AA  G +  +  LI+ GA     D    +   LA +  + +I     +   + 
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  130 bits (330), Expect = 4e-36
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 178 KGLIRAGAD--PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 235
           +  I    D   N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76

Query: 236 KCGHDGVTSLLVKEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT 293
           K    G+   L+ +G+++N  D +G   L  ++  G S+    +L +G + + R+ +  T
Sbjct: 77  KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136

Query: 294 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           PL VA+  G   + K LLE GA +  +D  G T     R+ G + +IK+ 
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  104 bits (261), Expect = 3e-26
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 31/149 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A  +  L   + L+  G++ N  D+ G++PL  +   GY +++ FL++ G ++N ++  G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL+ A K G   +   L                               L  G D S+R
Sbjct: 135 ETPLIVASKYGRSEIVKKL-------------------------------LELGADISAR 163

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGAS 316
           D    T    A   G   + K+  E   +
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.8 bits (250), Expect = 9e-25
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           G+  +K   +G     +   +       FL       N +D +  TPL+ A   G +   
Sbjct: 1   GSHMDK---NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAI 51

Query: 244 SLLVKEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 301
             LV+    L   D  GS  L  AV        +++LS G + +++D+  +TPL  +   
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111

Query: 302 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           G   M+  LLE GA+V  ++  G TPL      G   ++K L
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  130 bits (330), Expect = 8e-36
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 6/178 (3%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G+L  ++  ++   DP++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-----FLCTAVARGDSDFLKRVLSNGV 282
            TPL  A  C    +   LV+ GA++              C     G +D    +     
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 340
                +      L   ++E    +         +V  +D    T      + G +  +
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  117 bits (295), Expect = 9e-31
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 178 KGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 234
           + ++R    P K      +    L  A   G  ++    +++  D +  ++ G T L  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 235 IKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD-YDH 291
           I   +  +   L+  GA++N  D+  +  L  A +  D+     ++ +G    +    D 
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 292 RTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPL 328
            T         EG    A  L +   S+   +      L
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 13/81 (16%), Positives = 19/81 (23%), Gaps = 1/81 (1%)

Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
           A         G       L          +      L    S  + D   F   + V + 
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVL 182

Query: 222 IKDKFGNTPLLEAIKCGHDGV 242
            +D    T    A   G +G 
Sbjct: 183 RRDGPEETDWWWAALHGQEGY 203

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  130 bits (330), Expect = 1e-35
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 9/185 (4%)

Query: 168 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---K 223
           A    + +++ + L    +   + D DGR PLH + S    +IT FL+ K  ++N+    
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 224 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT----AVARGDSDFLKRVLS 279
           D  G TP   A   G+  V   L       +++   +   T    AV +   +  + ++ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 338
           NG     +D  ++ PLH AAS G   + +LL   G S V  +D+ G TPL      G+ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188

Query: 339 LIKLL 343
              LL
Sbjct: 189 AAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  121 bits (306), Expect = 2e-32
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 194 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
              PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 253 LNVDDAGSF-----LCTAVARGDSDFLKRVLSN--GVDPSSRDYDHRTPLHVAASEGLYL 305
           +N+DD            A + G+ + +K +       D +       T LH+A  +  + 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 306 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +++ L+E GASV  KD++   PL      G+  LI+LL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  118 bits (298), Expect = 4e-31
 Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 36/179 (20%)

Query: 168 AAYHGDLYQLKGLI--RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
           A   G+L  +K L       D NK    G + LHLA  + + +++ FLI+ G  + IKDK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 285
           F   PL  A   G   +  LL   G S                                +
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS------------------------------AVN 168

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            +D    TPL  A +EG    A LL+E  GA     D  G    D   +  N+ + K  
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFF 224

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  127 bits (322), Expect = 1e-35
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 183 AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 242
                +       + L  A +RG  +    L++ G D N  ++FG  P+   +  G   V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 243 TSLLVKEGASLNV-DDAG--SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
             LL+  GA  N  D A     +  A   G  D L  +   G      D   R P+ +A 
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 300 SEGLYLMAKLLLEAGA 315
            +G   +A+ L  A  
Sbjct: 120 EQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 33/128 (25%)

Query: 217 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 276
              I++     +  L  A   G       L                              
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQL------------------------------ 31

Query: 277 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT-PLDEGRMCG 335
            L  G DP++ +   R P+ V    G   +A+LLL  GA     D    T P+ +    G
Sbjct: 32  -LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG 89

Query: 336 NKNLIKLL 343
             + + +L
Sbjct: 90  FLDTLVVL 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
           AA  G L  L  L RAGA  +  D  GR P+ LA  +G+ DI  +L     D
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  128 bits (324), Expect = 2e-35
 Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 31/176 (17%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G D+N  D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL  A   GH  +  +L+K GA +N                                 
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNA-------------------------------N 109

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           D +  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 216
           AA  G L  ++ L++ GAD N  D  G++   ++   G ED+   L + 
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  126 bits (320), Expect = 3e-35
 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 34/177 (19%)

Query: 168 AAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           AA  GD+ +++ L+ R    P+  +  G++ L +    G   I L L+++G   N++D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTS 67

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G +P+ +A + G      +LV+ GA +NV                               
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNV------------------------------- 96

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            D     P+H+A  EG   +   L    + +  +D  G TPL+     G ++L+ +L
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  104 bits (262), Expect = 8e-27
 Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 32/133 (24%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L++ GA PN  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113

Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
             V S L                                    D   RD    TPL +A 
Sbjct: 114 TAVVSFLAA--------------------------------ESDLHRRDARGLTPLELAL 141

Query: 300 SEGLYLMAKLLLE 312
             G   +  +L  
Sbjct: 142 QRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.8 bits (211), Expect = 8e-20
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G L  LK L+  GAD N  D  G  P+HLA   G+  +  FL     D++ +D  G
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG 133

Query: 228 NTPLLEAIKCGHDGVTSLLVK 248
            TPL  A++ G   +  +L  
Sbjct: 134 LTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 82.8 bits (206), Expect = 5e-19
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 227 GNTPLLEAIKCGH-DGVTSLLVKEGASLNVDDAGSFLCTA---VARGDSDFLKRVLSNGV 282
               L  A   G    V  LL +E    + D    F  TA   +  G +     +L  G 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELV--HPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342
            P+ +D    +P+H AA  G     K+L+E GA V   D  G  P+      G+  ++  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 343 L 343
           L
Sbjct: 120 L 120

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  128 bits (325), Expect = 4e-35
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 8/164 (4%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
               G        +       +      +PLH A  RG        +   V +N  DK G
Sbjct: 52  GTSKGRT-----GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106

Query: 228 NTPLLEAIKCGHDGVTSLLVKE-GASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
           +T L  A   GH  +  +L  +    LN  +      L  A  +G +D ++ +L+ G   
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 328
             R+ + +    +A +     + K      A     +       
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  121 bits (306), Expect = 2e-32
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 4/158 (2%)

Query: 187 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 246
           P K    G+  +  A           L  +  DI       +T   +    G  G+    
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 247 VKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 306
                + ++D+    L  A  RG+  +L+  L N V  +  D    T L+ A   G   +
Sbjct: 65  YVAEQAESIDNP---LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 307 AKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            ++L  +    +  +++ G+T L      G  ++++LL
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (287), Expect = 1e-29
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 3/138 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKF 226
           AA  G+L  L+  +      N  D  G + L+ A   G++DI   L  Q  +++N ++K 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
           G+T L  A   G+  +  LL+ +GA  ++ +         A     +  LK+        
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 285 SSRDYDHRTPLHVAASEG 302
           +  + +       +  E 
Sbjct: 200 TLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.4 bits (194), Expect = 6e-17
 Identities = 9/72 (12%), Positives = 24/72 (33%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA+ G    ++ L+  GA  +  + + +    +AT+     +            + +   
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

Query: 228 NTPLLEAIKCGH 239
                ++    H
Sbjct: 207 YLDDEDSDLEHH 218

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  126 bits (319), Expect = 6e-35
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G   +++ L+  GA     D+ G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL  A   GH  +  +L                               L +G D +++
Sbjct: 68  RTPLHMAASEGHANIVEVL-------------------------------LKHGADVNAK 96

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           D    T LH A       + +LL++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  124 bits (315), Expect = 2e-34
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  GDL QL  L++   + N  +  GR+ L +    G  +I   L+ +G + ++KD+ G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTG 70

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
              + +A + G       L++  A +N+                                
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNI-------------------------------E 99

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  105 bits (266), Expect = 2e-27
 Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 30/136 (22%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
             V   LVK  AS                              +   R++   T   +A 
Sbjct: 116 LRVVEFLVKHTAS------------------------------NVGHRNHKGDTACDLAR 145

Query: 300 SEGLYLMAKLLLEAGA 315
             G   +  L+   GA
Sbjct: 146 LYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           +  G+ L +A ARGD + L  +L N V+ ++++   RT L      G   +A+ LL  GA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61

Query: 316 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +   KDR G   + +    G  + ++ L
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTL 89

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (311), Expect = 7e-33
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 30/181 (16%)

Query: 168 AAYHGD----LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 223
           A  H +    +  ++ +    A  N  +   ++PLHLA      +I   L+  G D  ++
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 224 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVD 283
           D  GNTPL  A + G      +L +   + ++                            
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-------------------------HSI 109

Query: 284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLDEGRMCGNKNLIKL 342
             + +Y+  T LH+A+  G   + +LL+  GA V  ++   G T L       N +L+ L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 343 L 343
           L
Sbjct: 170 L 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  112 bits (282), Expect = 7e-29
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 38/169 (22%)

Query: 168 AAYHGDLYQLKGLIRAGADP------NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 221
           A   G L  +  L ++   P        T+Y+G + LHLA+  GY  I   L+  G D+N
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 222 IKDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 280
            ++   G T L  A+   +  + SLL                               L  
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLL-------------------------------LKC 173

Query: 281 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 329
           G D +   Y   +P  +        + + L +                 
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 16/76 (21%), Positives = 24/76 (31%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A    +   +  L++ GAD N+  Y G SP  L   R    I   L Q  ++        
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 228 NTPLLEAIKCGHDGVT 243
                   +      T
Sbjct: 218 EDEESYDTESEFTEFT 233

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  121 bits (306), Expect = 8e-33
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 37/191 (19%)

Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLA----TSRGYEDITLFLIQKGVDINI 222
           +AA  G       L   G + +K      + L+             I++FLI KG DI  
Sbjct: 12  AAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 282
           + K G T      + G + +T                         G ++  K  L  G 
Sbjct: 71  RTKEGTTLFFPLFQGGGNDIT-------------------------GTTELCKIFLEKGA 105

Query: 283 DPSSRDYDHRTPLHVAASEGLYLMAK-------LLLEAGASVFTKDRWGNTPLDEGRMCG 335
           D ++    ++  +            +       +  ++G  +  KD+WG T L+  + C 
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 336 NKNLIKLLEDA 346
               +K++ED 
Sbjct: 166 KPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDIT-------LFL 213
              +       G     K  +  GAD        +  +       + D         L  
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140

Query: 214 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
            Q G+ + IKDK+G T L    +C       ++       N+ +
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 13/119 (10%)

Query: 221 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-FLCTAVARGDSDFLKRV-- 277
           N   ++    +  A   G       L ++G         S  L   +   + +   ++  
Sbjct: 2   NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 278 --LSNGVDPSSRDYDHRTPLHVAASEG------LYLMAKLLLEAGASVFTKDRWGNTPL 328
             ++ G D  SR  +  T        G         + K+ LE GA +    +     +
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 6/46 (13%), Positives = 12/46 (26%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
             ++G      D  G + L              +       N+K+ 
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  120 bits (304), Expect = 1e-32
 Identities = 58/177 (32%), Positives = 78/177 (44%), Gaps = 33/177 (18%)

Query: 168 AAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           AA  GD+  +K L      +    +    +PLH A       +  +L+Q G D++ KDK 
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G  PL  A   GH  V  LLVK GA +NV                               
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKHGAVVNV------------------------------- 103

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            D    TPLH AA++G Y + KLLL+ GA    K+R GNTPLD  +  G+ ++  LL
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  105 bits (264), Expect = 5e-27
 Identities = 41/161 (25%), Positives = 55/161 (34%), Gaps = 35/161 (21%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCGHDGV 242
           GA  N    +    L  A   G  +    L   + V+    +   +TPL  A       V
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG 302
              L                               L +G D  ++D     PLH A S G
Sbjct: 58  VEYL-------------------------------LQHGADVHAKDKGGLVPLHNACSYG 86

Query: 303 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            Y +A+LL++ GA V   D W  TPL E    G   + KLL
Sbjct: 87  HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  104 bits (263), Expect = 6e-27
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 32/148 (21%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +  +  ++ L++ GAD +  D  G  PLH A S G+ ++   L++ G  +N+ D + 
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL EA   G   +  LL                               L +G DP+ +
Sbjct: 109 FTPLHEAAAKGKYEICKLL-------------------------------LQHGADPTKK 137

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           + D  TPL +   +G   +  LL    A
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  119 bits (302), Expect = 1e-32
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 181 IRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240
           +   A  +         L  A +RG  +    L++ G + N  + +G  P+   +  G  
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 241 GVTSLLVKEGASLNVDDAGSF---LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 297
            V  LL+  GA  N  D  +    +  A   G  D L  +   G     RD   R P+ +
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 298 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 329
           A   G   +A+ L  A       +       +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.0 bits (240), Expect = 8e-24
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 180 LIRAGADPNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238
           L+  GA+PN  D      P+H A   G+ D  + L + G  ++++D +G  P+  A + G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 239 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD 272
           H  V   L          +         A G SD
Sbjct: 123 HRDVARYLRAAAGGTRGSNH---ARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.0 bits (175), Expect = 6e-15
 Identities = 19/64 (29%), Positives = 25/64 (39%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G L  L  L RAGA  +  D  GR P+ LA   G+ D+  +L          +   
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144

Query: 228 NTPL 231
               
Sbjct: 145 IDAA 148

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  119 bits (300), Expect = 5e-32
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 24/182 (13%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
               G            AD      +  +P   A  +  E     L+ +  D++  D+ G
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRDVDAVDENG 76

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCTAVARGDSDFLKRVLSNGVDP 284
            T LL     G D    LL + GA L+  D  G    L  A      + ++ ++  G D 
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
              D    T L +A            ++ G  +                 G + +I +LE
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRI-----------------GLEKVINVLE 179

Query: 345 DA 346
             
Sbjct: 180 GQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  110 bits (278), Expect = 8e-29
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
               ++T  +G     +    G+    +       D+  + +   TP   A +   +   
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQAL 60

Query: 244 SLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAAS 300
           S L+ E   ++  D      L      G    ++ +   G D   RD     T LH+AA 
Sbjct: 61  SQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 301 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                + + L+E GA +  +D  G T L+  R           
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 93.3 bits (233), Expect = 1e-22
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
            A  G    ++ L  AGAD +  D   G + LH+A      ++   L++ G DI ++D+ 
Sbjct: 83  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAV 266
           G T L  A +          ++ G  + ++   + L   V
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 182

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  120 bits (303), Expect = 7e-32
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 31/207 (14%)

Query: 168 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----N 221
           AA   D+  L K L   G + ++    G + LH+A      +  + L++   ++      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 222 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT---------------AV 266
            +   G T L  A+   +  +   L+  GAS++    GS                   A 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 267 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASV----- 317
             G  + ++ ++ +G D  ++D    T LH+   +        M  LLL           
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 318 -FTKDRWGNTPLDEGRMCGNKNLIKLL 343
               +  G TP     + GN  + + L
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 90.4 bits (225), Expect = 5e-21
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 40/164 (24%)

Query: 194 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
             SPL LA      + ++  L  +G +++ +   G T L  A    +     +L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 253 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
           L  +                            +S  Y+ +T LH+A       + + LL 
Sbjct: 63  LVFEP--------------------------MTSELYEGQTALHIAVINQNVNLVRALLA 96

Query: 313 AGASVFTKDR-------------WGNTPLDEGRMCGNKNLIKLL 343
            GASV  +               +G  PL      G++ +++LL
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (303), Expect = 7e-32
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           ++  G+   ++ +I    DP+  + +G + LH A   G+ +I  FL+Q GV++N  D  G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL  A  C +  V   LV+ GA++                                  
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMT----------------------------YS 135

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 328
           D            EG    ++ L      +   ++     L
Sbjct: 136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  114 bits (287), Expect = 2e-29
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 6/158 (3%)

Query: 191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 250
           +  G+  L               I  G+ +          LL++   G   +   ++ E 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 251 ASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 308
              ++ +D G   L  AV  G ++ +K ++  GV+ ++ D D  TPLH AAS     + K
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 309 LLLEAGASVFTK---DRWGNTPLDEGRMCGNKNLIKLL 343
            L+E+GA+VF     D        E    G     + L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 7/78 (8%), Positives = 19/78 (24%), Gaps = 5/78 (6%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
               G     + L          +      L     +  +++    +++G  + I  +  
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHRED 202

Query: 228 N--TPLLEAIKCGHDGVT 243
                   A     +G  
Sbjct: 203 EDEIEWWWARLNDKEGYV 220

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  111 bits (280), Expect = 7e-30
 Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 31/135 (22%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A  +GDL ++K  +  G D N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPLL A+  GH     LL                               LS G D + +
Sbjct: 74  ITPLLSAVYEGHVSCVKLL-------------------------------LSKGADKTVK 102

Query: 288 DYDHRTPLHVAASEG 302
             D  T      ++ 
Sbjct: 103 GPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  107 bits (271), Expect = 1e-28
 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 31/149 (20%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
                   A   G  D     + KG D+N   + G  PL  A  CG   +   L+ +GA 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 253 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
           +N                                 D  H TPL  A  EG     KLLL 
Sbjct: 66  INA-------------------------------PDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 313 AGASVFTKDRWGNTPLDEGRMCGNKNLIK 341
            GA    K   G T  +       K L++
Sbjct: 95  KGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.9 bits (201), Expect = 8e-19
 Identities = 22/72 (30%), Positives = 28/72 (38%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G L  L+ L+  GAD N  D    +PL  A   G+      L+ KG D  +K   G
Sbjct: 47  AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

Query: 228 NTPLLEAIKCGH 239
            T          
Sbjct: 107 LTAFEATDNQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDI 209
           SA Y G +  +K L+  GAD      DG +      ++  + +
Sbjct: 79  SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  114 bits (288), Expect = 1e-29
 Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 36/178 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KF 226
           AA   D   L  L+    D +  D +GR+ L      G +     L + G D++ +D + 
Sbjct: 52  AARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G T L  A       V   L                               +  G D   
Sbjct: 111 GLTALHMAAGYVRPEVVEAL-------------------------------VELGADIEV 139

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
            D    T L +A            ++ G  +  +       + EG++     + +++E
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDEIVE 194

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  112 bits (282), Expect = 9e-29
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 16/171 (9%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
            A  G    ++ L  AGAD +  D   G + LH+A      ++   L++ G DI ++D+ 
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G T L  A +          ++ G  + ++   + L   V            +   +   
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY---------AEVDEIVE 194

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 333
           +    +   ++   +       +     A    KD      L     E  +
Sbjct: 195 KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  107 bits (269), Expect = 5e-27
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
           ++T  +G     +    G+    +       D+  +     TP   A +   +   S L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65

Query: 248 KEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLY 304
            E   ++  D      L      G    ++ +   G D   RD     T LH+AA     
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 305 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            + + L+E GA +  +D  G T L+  R           
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.8 bits (195), Expect = 7e-17
 Identities = 31/126 (24%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRVL 278
            +     G    L   K GH           A  +V         TA  + D   L   L
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQALS-QL 64

Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNK 337
               D  + D + RT L   A  G     +LL EAGA +  +D R G T L         
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 338 NLIKLL 343
            +++ L
Sbjct: 125 EVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 10/96 (10%), Positives = 17/96 (17%), Gaps = 24/96 (25%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDY----------------------DGRSPLHLATSRG 205
           A            ++ G                               G+   +L   + 
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210

Query: 206 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 241
             D          +   KD      L  A+     G
Sbjct: 211 GGDCEWVKGVHVAEDVAKDY--EDGLEYAVAESVIG 244

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (278), Expect = 2e-29
 Identities = 57/148 (38%), Positives = 75/148 (50%), Gaps = 31/148 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +G L  +K L+ AGAD N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL  A + GH  V  LL                               L  G D +++
Sbjct: 69  RTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNAK 97

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           D + RTPLH+AA  G   + KLLLEAGA
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (273), Expect = 8e-29
 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 31/151 (20%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 253 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
           +N                                +D + RTPLH+AA  G   + KLLLE
Sbjct: 61  VNA-------------------------------KDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 313 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           AGA V  KD+ G TPL      G+  ++KLL
Sbjct: 90  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  107 bits (270), Expect = 2e-28
 Identities = 41/145 (28%), Positives = 56/145 (38%), Gaps = 33/145 (22%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           G        DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH  + 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 244 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 303
            LL+ +GA +N                                R  D  TP H+A   G 
Sbjct: 59  KLLLAKGADVNA-------------------------------RSKDGNTPEHLAKKNGH 87

Query: 304 YLMAKLLLEAGASVFTKDRWGNTPL 328
           + + KLL   GA V  +    +   
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 96.3 bits (241), Expect = 2e-24
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 31/129 (24%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +G   ++K L+  GAD N    DG +PLHLA   G+ +I   L+ KG D+N + K G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           NTP   A K GH  +  LL                                + G D ++R
Sbjct: 76  NTPEHLAKKNGHHEIVKLL-------------------------------DAKGADVNAR 104

Query: 288 DYDHRTPLH 296
            +      H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 38/124 (30%), Positives = 50/124 (40%), Gaps = 31/124 (25%)

Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279
                K GNTPL  A K GH      L+ +GA +N                         
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN------------------------- 36

Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
                 +R  D  TPLH+AA  G   + KLLL  GA V  + + GNTP    +  G+  +
Sbjct: 37  ------ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90

Query: 340 IKLL 343
           +KLL
Sbjct: 91  VKLL 94

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  111 bits (279), Expect = 1e-27
 Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 22/184 (11%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINIK 223
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197

Query: 224 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGASLN--VDDAGSFLCTAVARG 269
           D    T L              A K   D +   +VK+         +            
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 270 DSDFLKRVLSNGVDPS----SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 325
             D +   L      +    ++D +  T L++AA  G   +   LL+ GA  F  ++ G 
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317

Query: 326 TPLD 329
            P+D
Sbjct: 318 RPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  100 bits (251), Expect = 5e-24
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 180 LIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238
                 + N   D  G +PLH  TS    ++   L++ G +    D  G + L++A+K  
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175

Query: 239 H----DGVTSLLVKEGASLNVDD-------------AGSFLCTAVARGDSDF-LKRVLSN 280
           +        +LL      L ++D             +G   C+A A+   D  +  ++  
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 281 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF----TKDRWGNTPLDEGRMCGN 336
              P     + +       +          L+    +      +D  G+T L+     GN
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 337 KNLIKLL 343
            +++  L
Sbjct: 296 ISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.0 bits (202), Expect = 2e-17
 Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 37/197 (18%)

Query: 138 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 197
            S L++ +       +  + + +L   +    +         L    ++ N         
Sbjct: 40  SSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99

Query: 198 L-HLATSRGYEDITLFLIQKGVDINIK-DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
             H++     +++        +++NI  D+ GNTPL       +  +   L         
Sbjct: 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL--------- 150

Query: 256 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG----LYLMAKLLL 311
                                 + +G +    D    + L  A              LL 
Sbjct: 151 ----------------------VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 312 EAGASVFTKDRWGNTPL 328
                +  +D    T L
Sbjct: 189 YLYPCLILEDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 65.4 bits (159), Expect = 7e-12
 Identities = 17/66 (25%), Positives = 24/66 (36%)

Query: 166 NSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
           N       L  L          N  D +G + L++A   G   I   L+  G D  I +K
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

Query: 226 FGNTPL 231
            G  P+
Sbjct: 315 SGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 21/170 (12%), Positives = 44/170 (25%), Gaps = 45/170 (26%)

Query: 143 LKQLKSDIT---------FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYD 193
           L  L   +           H     + +     +A Y+ D+  +  +++    P ++  +
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL-MGWIVKKQNRPIQSGTN 245

Query: 194 GRSPLHLA----TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE 249
            +                +           +N +D  G+T L  A + G+  +   L   
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL--- 302

Query: 250 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
                                       L  G DP   +     P+   A
Sbjct: 303 ----------------------------LDYGADPFIANKSGLRPVDFGA 324

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  104 bits (263), Expect = 3e-27
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 184 GADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 242
           G+  +     D    L  A   G +D    L+  G D+N KD++G TPL  A   GH  +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG 302
             +L+K GA +N                                 D    TPLH+AA  G
Sbjct: 63  VEVLLKNGADVNA-------------------------------VDAIGFTPLHLAAFIG 91

Query: 303 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
              +A++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 98.6 bits (247), Expect = 6e-25
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 31/145 (21%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G   +++ L+  GAD N  D  G +PL+LAT+ G+ +I   L++ G D+N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            TPL  A   GH  +  +L                               L +G D +++
Sbjct: 81  FTPLHLAAFIGHLEIAEVL-------------------------------LKHGADVNAQ 109

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLE 312
           D   +T   ++   G   +A++L +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 32/129 (24%)

Query: 216 KGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL 274
           +G   +          LLEA + G D    +L                            
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRIL---------------------------- 33

Query: 275 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 334
              ++NG D +++D    TPL++A + G   + ++LL+ GA V   D  G TPL      
Sbjct: 34  ---MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90

Query: 335 GNKNLIKLL 343
           G+  + ++L
Sbjct: 91  GHLEIAEVL 99

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  106 bits (266), Expect = 2e-26
 Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 39/188 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTD--------------YDGRSPLHLATSRGYEDITLFL 213
           A    ++  +  L+  GAD                   Y G  PL LA       I  FL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 214 IQKG---VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD 270
           +Q      DI+ +D  GNT L   ++   + V +          +   G           
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----------- 216

Query: 271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 330
                ++          +    TPL +AAS G   +   +L+                  
Sbjct: 217 ----AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265

Query: 331 GRMCGNKN 338
                + +
Sbjct: 266 AAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 98.7 bits (246), Expect = 1e-23
 Identities = 38/205 (18%), Positives = 60/205 (29%), Gaps = 37/205 (18%)

Query: 157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYD-GRSPLHLAT---SRGYEDITLF 212
            +A    + N       L  L+   +   D    D + G++ L  A      G  D    
Sbjct: 18  FDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 213 LIQKGVDINI-----------KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF 261
           L+      +                G T L  AI+  +  + +LLV+ GA +     G F
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 262 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVF 318
                                      Y    PL +AA      + K LL+     A + 
Sbjct: 136 FKKT-----------------KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 319 TKDRWGNTPLDEGRMCGNKNLIKLL 343
            +D  GNT L       +  +    
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 88.7 bits (220), Expect = 4e-20
 Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 45/186 (24%)

Query: 183 AGADPNKTDYDGRSPLHLATSRGYE-------DITLFLIQKGVDINIKD-KFGNTPLLEA 234
             A         R  +  A ++                 ++  D   KD + G T LL+A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 235 ---IKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH 291
              +  G +   +LL+      +                              +   Y  
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFV--------------------NASYTDSYYKG 101

Query: 292 RTPLHVAASEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNK 337
           +T LH+A       +  LL+E GA V                   +G  PL         
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 338 NLIKLL 343
            ++K L
Sbjct: 162 AIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 7/83 (8%)

Query: 157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 216
                  +  ++ Y+  L     L         T+  G +PL LA S G   +  +++Q+
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 217 GVDINIKDKFGNTPLLEAIKCGH 239
            +               A    H
Sbjct: 256 EIH-------EPECRHAAAHHHH 271

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (255), Expect = 5e-25
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 35/178 (19%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-------------KFGNTP 230
            A      Y G S LH+A  +        L++ G D++++               FG  P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 231 LLEAIKCGHDGVTSLLVKEGASL-NVDDAGSFLCT----AVARGDSDFLKRVLSNGVDPS 285
           L  A       V + L++      +++   S   T     V   D               
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--------------- 184

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
             +    + L +   +GL  M   L          +  G TPL      G   + + +
Sbjct: 185 --NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 99.9 bits (249), Expect = 3e-24
 Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 31/174 (17%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTD-------------YDGRSPLHLATSRGYEDITLFLI 214
           A     L  +K L+  GAD +                Y G  PL LA      D+  +L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 215 QKGV---DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271
           +       +   D  GNT L   +    +                   S L   +  G  
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADN---------------SPENSALVIHMYDGLL 201

Query: 272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 325
               R+          ++   TPL +AA EG   + + +L+   S        +
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.4 bits (240), Expect = 6e-23
 Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 43/187 (22%)

Query: 167 SAAYHGDLYQLKGLI--------RAGADPNKTDYDGRSPLHLA---TSRGYEDITLFLIQ 215
           S    G   +L GL+                    G++ L  A      G     + L+Q
Sbjct: 8   SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67

Query: 216 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT 264
                             +   G++ L  AI+        LLV+ GA +++   G F   
Sbjct: 68  IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK 127

Query: 265 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKD 321
                                +  Y    PL +AA    + +   LLE     AS+   D
Sbjct: 128 ------------------HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 322 RWGNTPL 328
             GNT L
Sbjct: 170 SLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 70.6 bits (173), Expect = 5e-14
 Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 45/176 (25%)

Query: 192 YDGRSPLHLATSRGY----EDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDG-- 241
           +D R  L    SRG       +  +L             +   G T L++A+    DG  
Sbjct: 1   FD-RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN 59

Query: 242 -VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS 300
                L++                                    +   Y   + LH+A  
Sbjct: 60  ACIMPLLQIDKDSGNPK--------------------PLVNAQCTDEFYQGHSALHIAIE 99

Query: 301 EGLYLMAKLLLEAGASVFTKDR-------------WGNTPLDEGRMCGNKNLIKLL 343
           +      KLL+E GA V  +               +G  PL         +++  L
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 93.2 bits (233), Expect = 1e-23
 Identities = 39/84 (46%), Positives = 53/84 (63%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +G L  +K L+ AGAD N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGA 251
            TPL  A + GH  V  LL++ GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 92.8 bits (232), Expect = 2e-23
 Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 31/123 (25%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 253 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
           +N                                +D + RTPLH+AA  G   + KLLLE
Sbjct: 61  VNA-------------------------------KDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 313 AGA 315
           AGA
Sbjct: 90  AGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 31/117 (26%)

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G TPL  A + GH  V  LL++ GA +N                                
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA------------------------------- 30

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +D + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 49.7 bits (120), Expect = 4e-08
 Identities = 27/54 (50%), Positives = 34/54 (62%)

Query: 290 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 92.3 bits (230), Expect = 6e-23
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 34/143 (23%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
            + H   +   GL+  G+       D    L  A   G +D    L+  G D+  KDK G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           +TPL  A + GH  V  LL                               L  G D  ++
Sbjct: 58  STPLHLAARNGHLEVVKLL-------------------------------LEAGADVXAQ 86

Query: 288 DYDHRTPLHVAASEGLYLMAKLL 310
           D   +T   ++   G   +A++L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.6 bits (223), Expect = 5e-22
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 34/144 (23%)

Query: 201 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 260
            +S  +   +  L+ +G  +          LLEA + G D    +L+  GA +       
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVA------ 51

Query: 261 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 320
                                    ++D +  TPLH+AA  G   + KLLLEAGA V  +
Sbjct: 52  -------------------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 321 DRWGNTPLDEGRMCGNKNLIKLLE 344
           D++G T  D     GN++L ++L+
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEILQ 110

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 94.5 bits (235), Expect = 3e-22
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 50/176 (28%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTD--------------YDGRSPLHLATSRGYEDITLFL 213
           A      + ++ L+  GAD +                 Y G  PL LA       I  +L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 214 IQKG---VDINIKDKFGNTPLLEAIKCGHD---------GVTSLLVKEGASLNVDDAGSF 261
            + G    D+  +D  GNT L   +    +          +  LL+ + A L  D     
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN--- 216

Query: 262 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
                                  +  + D  +PL +AA  G   + + ++    + 
Sbjct: 217 ---------------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 92.9 bits (231), Expect = 1e-21
 Identities = 38/187 (20%), Positives = 54/187 (28%), Gaps = 42/187 (22%)

Query: 167 SAAYHGDLYQLKG----LIRAGADPNKTDY----DGRSPLHLA---TSRGYEDITLFLIQ 215
                G    L+G    L+         ++     G++ L  A    S G  D    L+ 
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 216 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT 264
                                 G T L  AI+        LLV++GA ++    G F   
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 265 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKD 321
                             D     Y    PL +AA      +   L E G   A +  +D
Sbjct: 131 K-----------------DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173

Query: 322 RWGNTPL 328
             GNT L
Sbjct: 174 SRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 46/178 (25%)

Query: 191 DYDGRSPLHLATSRG----YEDITLFLIQKGVDINIKD----KFGNTPLLEA---IKCGH 239
            ++ R  L    SRG     E +  FL+     +  ++      G T L +A   +  G 
Sbjct: 3   VFN-RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
           +    +L+                        +  + + S   D     Y  +T LH+A 
Sbjct: 62  NDTIPILLDIAEKTG-----------------NMREFINSPFRD---VYYRGQTALHIAI 101

Query: 300 SEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNKNLIKLL 343
                   +LL+E GA V  + R              +G  PL         +++  L
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 19/106 (17%)

Query: 168 AAYHGDLYQLKGLIRAG---ADPNKTDYDGRSPLHLATSRGYE---------DITLFLIQ 215
           AA     + +  L   G   AD  + D  G + LH   +              +   L+ 
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 216 KGVDIN-------IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 254
           K   +        + +  G +PL+ A K G  G+   +++   +  
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 180 LIRAGADPNKT-------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
           L+   A            + DG SPL +A   G   I   +I++ +       
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 18/73 (24%), Positives = 28/73 (38%)

Query: 63  DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
            +L   P D+   I   L     ++   F+  S   +  + +        PG++I   G 
Sbjct: 7   KVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGE 66

Query: 123 VVDQLYFVCHGVL 135
            VD L FV  G L
Sbjct: 67  SVDSLCFVVSGSL 79

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 83.9 bits (208), Expect = 5e-19
 Identities = 13/72 (18%), Positives = 34/72 (47%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           +   +   +   ++       +  V  F G  S F+ ++V  +  E F P + ++++G  
Sbjct: 52  IFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTF 111

Query: 124 VDQLYFVCHGVL 135
            D+++F+  G++
Sbjct: 112 GDRMFFIQQGIV 123

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 81.6 bits (202), Expect = 4e-18
 Identities = 18/72 (25%), Positives = 35/72 (48%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           +L  L   +  KI        +  + LF      F+  ++ ++  E F PG+ I+ +G +
Sbjct: 53  ILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTI 112

Query: 124 VDQLYFVCHGVL 135
             ++YF+ HGV+
Sbjct: 113 GKKMYFIQHGVV 124

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 82.3 bits (203), Expect = 2e-17
 Identities = 40/347 (11%), Positives = 90/347 (25%), Gaps = 70/347 (20%)

Query: 78  QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGK 137
           Q   +P+I   +LF+   S     ++   ++E      + +     ++Q+  +       
Sbjct: 17  QLRLIPWILWENLFQHFISANELSLMTLSYKEAI---HIFLPGTKNMEQVRQLLCLYYAH 73

Query: 138 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 197
            +    +         I          +   +   D   L  L+ +         +    
Sbjct: 74  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDT--LCLLLTSDEIVKVIQAENYQA 131

Query: 198 LHLATSRGYEDITLFLIQKGVDINIKDKF--GNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
             LA   G+  +   L +      +             A + GH  V + L +   +   
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 256 DDAGS-----FLCTAVARGDSDFLKRVLSNGVDPSSRDY--------------------- 289
               +     F   AV RG  + +  +L   V  +  +                      
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 290 -DHRTPLHVAASEGL--------------------------------YLMAKLLLEAGAS 316
            +      ++  +G+                                +L++   ++A A 
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 317 VFTKDRWGNTPLDEGRMCGNKNLIKLL----EDAECTQLSEFHYCSQ 359
             T     N  L      GN+    LL         T+ + ++    
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINET 358

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.0 bits (184), Expect = 7e-15
 Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 39/214 (18%)

Query: 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGV 218
           A R+  AA +G L+ L  L               +  +    A  RG+ ++  FL+   V
Sbjct: 166 AFRL--AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 219 DINIKDKFG------------------NTPLLEAIKCGH-DGVTSLLVKEGASLNVDDAG 259
            +   +                        + +A K  + DGV  L+ K           
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF---- 279

Query: 260 SFLCTAVARGDSDFLKRV--------LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311
             L   + R D   L  +        +      ++   D    L +A   G      LLL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 312 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
              + +                 G  +L  +  +
Sbjct: 340 SIPSVLALTK---ANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 22/154 (14%), Positives = 40/154 (25%), Gaps = 29/154 (18%)

Query: 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYD--------------------GR 195
                LA        +G+ Y    + R      +                        G 
Sbjct: 220 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 279

Query: 196 SPLHLATSRGYED--------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
             L     R  E         +++  I+            N  L  A++ G+ G  +LL+
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 248 KEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 281
              + L +  A ++       G  D     L + 
Sbjct: 340 SIPSVLALTKANNYYI-NETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 155 GKHEAELALRVNSAAYHGDLYQLKGL--IRAGADPNKTDYDGRSPLHLATSRGYEDITLF 212
           G +     +R N      D+  L  +  I+A A       D    L LA   G +     
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 213 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 252
           L+     + +               G   + ++ ++    
Sbjct: 338 LLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHHH 374

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 63  DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
           +LL   P ++   I+  L    + ++ LF+  S   +  + + +   F  PGE ++ QG+
Sbjct: 56  ELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGD 114

Query: 123 VVDQLYFVCHGVL 135
            +  +YFVC G +
Sbjct: 115 ALQAIYFVCSGSM 127

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 73.1 bits (179), Expect = 1e-14
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 233 EAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVARGDSDFLKRV---LSNG 281
           EA+K            +G  L          +   + L  AV   D   L  V   + N 
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 195

Query: 282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 341
            +   +     T LH           KLLL   AS+   +  G TPLD  +   +++  +
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 342 LLEDAECTQLSEF 354
           LL  A   + +  
Sbjct: 256 LLTQALSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 27/173 (15%), Positives = 46/173 (26%), Gaps = 40/173 (23%)

Query: 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDY------DGRSPLHLATSRG---Y 206
              A     +  A    D++ L      G D  +            + LHLA        
Sbjct: 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 184

Query: 207 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAV 266
             I  FL+Q   +++ +   G+T L       +     LL++                  
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR------------------ 226

Query: 267 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 319
                                +    TPL +A         +LL +A +  F 
Sbjct: 227 -------------GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 40/162 (24%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDY------DGRSPLHLATSRGYED---ITLFLIQKGV 218
           A  + DL  +      G D  +              LHLA     +    +  F+IQ G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 219 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 278
            ++ K   GNT L  A          LL+K  A                           
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--------------------------- 250

Query: 279 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 320
                  + +    T L +A  +      +LL +A A  F  
Sbjct: 251 ----LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 288

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.4 bits (172), Expect = 1e-13
 Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS------DFLKRVLSNGVDP 284
           +LEA   G D    L   +  +         L  AV   +       DF+   + NG   
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQA----PEELVLHLAVKVANQASLPLVDFI---IQNGGHL 219

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
            ++  D  T LH AA        KLLL+  A V T +  G T LD  R   +K   +LLE
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279

Query: 345 DAECTQLSEF 354
            A+    +  
Sbjct: 280 QAQAGTFAFP 289

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.9 bits (168), Expect = 4e-13
 Identities = 19/82 (23%), Positives = 30/82 (36%)

Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
             A    L  +  +I+ G   +    DG + LH A      D    L++    +   ++ 
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 258

Query: 227 GNTPLLEAIKCGHDGVTSLLVK 248
           G T L  A K  H     LL +
Sbjct: 259 GETALDIARKKHHKECEELLEQ 280

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 70.6 bits (172), Expect = 1e-13
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 2/156 (1%)

Query: 138 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 197
            +        +D+ +  G  +    L    A     L   + L++ GA+ N+ D  GR P
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPL--IQATAANSLLACEFLLQNGANVNQADSAGRGP 271

Query: 198 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 257
           LH AT  G+  +    +++G D+  +D  G  PL  A++  +  + +LL           
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331

Query: 258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT 293
            G            DF      +    S R +D  T
Sbjct: 332 QGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHT 367

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.0 bits (160), Expect = 5e-12
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 231 LLEAIKCGHDGVTSLLVKEGASLNV----DDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
              +         +  +  GA +N      D  + L  A A       + +L NG + + 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
            D   R PLH A   G   +A L L+ GA +  +D  G  PL       N +++ LL  A
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

Query: 347 ECTQLSEFHYCSQGMIDKMH 366
           +     E         D+ +
Sbjct: 324 KMR---EAEAAQGQAGDETY 340

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 11/51 (21%), Positives = 25/51 (49%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           + +V LF+      ++ I  R+    F     ++ +G+ V+++ F+  G L
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRL 58

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 167 SAAYHGDLYQLKGLIRAGADPNKT------DYDGRSPLHLA---TSRGYEDITLFLIQKG 217
           +A  + DL  +      G D  +              LHLA    ++    +  F+IQ G
Sbjct: 138 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 197

Query: 218 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 268
             ++ K   GNT L  A          LL+K  A +   +        +AR
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 17/69 (24%), Positives = 27/69 (39%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           +I+ G   +    DG + LH A      D    L++    +   ++ G T L  A K  H
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 252

Query: 240 DGVTSLLVK 248
                LL +
Sbjct: 253 KECEELLEQ 261

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGV--LGKESNLR 142
           +  V LF+      + +IV  +       G VI   G   D+++FV  G   +   + + 
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVE 72

Query: 143 LKQ 145
           L  
Sbjct: 73  LGP 75

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG-----VLGKES 139
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G     V     
Sbjct: 40  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGV 99

Query: 140 NLRLKQLKSDITFHIGKHEAELAL 163
              +    +  +F       ELAL
Sbjct: 100 GRCVGNYDNRGSF------GELAL 117

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           + + CL++ L R+  R +                     + +Y   ++ + + K  ++  
Sbjct: 94  ATSDCLLWALDRLTFRKI-------------LLGSSFKKRLMYDDLLKSMPVLKSLTTYD 140

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
             ++   +  + + PGE I+ +G+  +  Y + +G
Sbjct: 141 RAKLADALDTKIYQPGETIIREGDQGENFYLIEYG 175

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG---VLGKESNL 141
           I    LF    S+    ++  + E+    G  I++QG+  D  Y V  G       ++ +
Sbjct: 9   IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKV 68

Query: 142 RLKQLKSDITFHIGKHEAELAL 163
                    +   G    ELAL
Sbjct: 69  N--------SSGPGSSFGELAL 82

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG-KESNLRL 143
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G +    +N   
Sbjct: 40  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 99

Query: 144 KQLKSDITFHIGKHEAELAL 163
             +    +F  G    ELAL
Sbjct: 100 TSVGEGGSF--G----ELAL 113

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           I      K      I +IV  ++   +     I+++G+V   +Y +  G +
Sbjct: 25  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKV 75

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 81  YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           Y  +IE +   K        ++V  +  + +  GE I+ QG++ D  + V  G +
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEV 319

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 46.7 bits (110), Expect = 8e-06
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG-----VLGKES 139
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G     V     
Sbjct: 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGV 206

Query: 140 NLRLKQLKSDITFHIGKHEAELAL 163
              +    +  +F       ELAL
Sbjct: 207 GRCVGNYDNRGSF------GELAL 224

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           +     ++ + R   + +     +   +              YM +++ V  F+    E 
Sbjct: 126 TLVNVKLWAIDRQCFQTIMMRTGLIKHTE-------------YMEFLKSVPTFQSLPEEI 172

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           ++++   + E  +  GE I+ QG   D  + +  G
Sbjct: 173 LSKLADVLEETHYENGEYIIRQGARGDTFFIISKG 207

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG---VLGKESNL 141
           I      K      I +IV  ++   +     I+++G+V   +Y +  G   V  +   L
Sbjct: 41  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKL 100

Query: 142 RLKQLKSDITFHIGKHEAELALRVNS 167
                    T   GK   ELA+  N 
Sbjct: 101 C--------TMGPGKVFGELAILYNC 118

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           +  + K+ LF   S+E +  +   +          ++ +G+  D L  +  G
Sbjct: 38  LEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTG 89

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
            +     F   + E +  I +   E+ F  G VI ++ +  D L  +  G
Sbjct: 7   RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEG 56

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 262 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG 302
           L     + +   LK  +   V P S +    T ++   S G
Sbjct: 486 LDYESLQQELA-LKETVWKKVSPESNEDISTTVVYRMESLG 525

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 17/81 (20%)

Query: 143 LKQLKSDITFHI----------------GKHEAELALRVNSAAYHGDLYQLKGLIRAGAD 186
              L S   FH                 G  +      ++  +   +L  LK  +     
Sbjct: 448 CHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRHSFGPLDYESLQQEL-ALKETVWKKVS 506

Query: 187 PNKTDYDGRSPLHLATSRGYE 207
           P   +    + ++   S G +
Sbjct: 507 PESNEDISTTVVYRMESLGEK 527

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           ++T   ++ + R + R +                     + +Y  ++ KVS+ +      
Sbjct: 126 AKTNVKLWGIDRDSYRRILMG-------------STLRKRKMYEEFLSKVSILESLDKWE 172

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
              +   +    F  G+ I+ QG   D+ + +  G
Sbjct: 173 RLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEG 207

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G +
Sbjct: 41  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEM 91

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL--------G 136
           + +  LF     E   ++   + E     G+ +  +G+  D+LY V  G +        G
Sbjct: 7   LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 137 KESNLRL 143
           +E+ L +
Sbjct: 67  RENMLAV 73

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 81  YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
            +  +  + +F+GC +E +  +   V       G+V++ QG        +  G
Sbjct: 11  RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSG 63

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           ++T   ++ + R + R +                     + +Y  ++ KVS+ +      
Sbjct: 217 AKTDLKLWGIDRDSYRRILM-------------GSTLRKRKMYEEFLSKVSILESLEKWE 263

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
              +   +    F  GE I+ QG   D  Y +  G
Sbjct: 264 RLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEG 298

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           I K  LF        + I   +     + GE +++QGN  D  Y V  G +
Sbjct: 132 ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEV 182

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
            ++ V  F+      + QI +  + E    G  +  QG++    Y V  G L
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL 94

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 84  YIEKVSLFKGCSSEFINQIV-IRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           ++ ++  F   +     ++  + + E     G +I+E G  +D  Y + +G
Sbjct: 17  FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG 67

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL------ 135
           M  I  + L K  +   +   +   H   +     ++ QG   + LY++  G +      
Sbjct: 45  MADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD 104

Query: 136 --GKESNLRL 143
             GKE  L  
Sbjct: 105 EEGKEMILSY 114

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL------ 135
           +  +++  LF+    + + + +  V E  F P E+++EQ    + L+ V  GV+      
Sbjct: 5   LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 136 --GKESNLRL 143
             G+E  L  
Sbjct: 65  LGGRERVLGD 74

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL--------G 136
           ++   LF+  S   + +++          G  +  QG      Y++  G +        G
Sbjct: 14  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 73

Query: 137 KESNLRL 143
           +E  L +
Sbjct: 74  QEKILEV 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 67/435 (15%), Positives = 126/435 (28%), Gaps = 142/435 (32%)

Query: 26  VDIIMQFFLAYRDSQTY----CLVYKLTRIALRYLKSSFIID---LLSCLPWDVIYKISQ 78
           +D I+        S T      L+ K   +  ++++    I+   L+S  P     +   
Sbjct: 51  IDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPS 106

Query: 79  TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQL----YFVCHGV 134
            +   YIE+       +  F    V R+           ++    + +L      +  GV
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--------YLKLRQALLELRPAKNVLIDGV 158

Query: 135 LG--KE----SNLRLKQLKSDITFHI-----GK-HEAELALRVNSAAYHGDLYQLKGLIR 182
           LG  K           +++  + F I        +  E  L             L+ L+ 
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-----------MLQKLLY 207

Query: 183 AGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 241
              DPN T   D  S + L       ++   L  K                         
Sbjct: 208 Q-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-----------------------PY 243

Query: 242 VTSLLVKEGASL-NVDDAG---SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 297
              LLV     L NV +A    +F          +   ++L   +  ++R         V
Sbjct: 244 ENCLLV-----LLNVQNAKAWNAF----------NLSCKIL---L--TTRFKQ------V 277

Query: 298 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYC 357
                      + L+  +   T D        E      K+L+    D     L      
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD--------EV-----KSLLLKYLDCRPQDLPR---- 320

Query: 358 SQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLW--VPH----NIEELIKLAVDKLDFPD 411
               +   +PR+ ++       E +  R G+  W    H     +  +I+ +++ L+ P 
Sbjct: 321 ---EVLTTNPRRLSIIA-----ESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE-PA 369

Query: 412 GH-------SILSED 419
            +       S+    
Sbjct: 370 EYRKMFDRLSVFPPS 384

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 8/70 (11%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL------ 135
           M +     L+   ++     I   +  +    G +I         L  V  G L      
Sbjct: 2   MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS 61

Query: 136 --GKESNLRL 143
             G+E  L  
Sbjct: 62  DEGREITLYR 71

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL-------- 135
            + +  +F+G     I  +  ++    F  G  +  +G   D+LY +  G +        
Sbjct: 7   ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66

Query: 136 GKESNLRL 143
           G+E+ L +
Sbjct: 67  GRENLLTI 74

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL-------G 136
            +   +L +  +SE  + ++    E+ +    ++       + ++ V  G +        
Sbjct: 5   RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYED 64

Query: 137 KESNLRL 143
           KE  L +
Sbjct: 65  KEFTLAI 71

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL--------G 136
           ++   LF G + E ++  +       +  G+ I  QG++   LY V  G +        G
Sbjct: 1   MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 137 KESNLRL 143
           +E  L L
Sbjct: 61  QERTLAL 67

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 81  YMPYIEKVSLFKGCSSEFINQIV--IRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL--- 135
               + ++ LF+G   E    I+  +++H      GE I++ GN   QL F+  G +   
Sbjct: 16  MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 136 -----GKESNLRL 143
                   + +  
Sbjct: 76  TNAKENIYTVIEQ 88

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL--------G 136
           ++   LF+  S   + +++          G  +  QG      Y++  G +        G
Sbjct: 11  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 70

Query: 137 KESNLRL 143
           +E  L +
Sbjct: 71  QEKILEV 77

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 88  VSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL--------GKES 139
           + L K  +   +   +   H   +     ++ QG   + LY++  G +        GKE 
Sbjct: 1   MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60

Query: 140 NLRL 143
            L  
Sbjct: 61  ILSY 64

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL--------G 136
                L +    + ++ ++ +     +  GE +  Q      ++ V  G +        G
Sbjct: 13  ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTG 72

Query: 137 KESNLRL 143
            E+ + +
Sbjct: 73  SEAVVSV 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	97.83
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	97.76
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	97.71
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	97.39
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	95.95
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	95.64
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	95.45
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	95.28
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	94.94
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	94.93
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	94.91
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	94.7
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	94.61
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	94.52
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	94.23
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	93.23
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	93.14
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	93.03
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	92.85
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	92.81
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	92.69
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	92.47
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	92.32
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	91.88
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	91.35
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	91.32
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	91.29
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	91.02
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	90.79
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	90.42
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	90.34
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	90.33
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	88.6
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	88.35
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	87.95
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	87.71
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	86.54
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	84.78
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	84.35
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	83.44
1ft9_A	222	Carbon monoxide oxidation system transcription reg	83.02
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	81.14
2dnf_A	108	Doublecortin domain-containing protein 2; structur	80.43
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	80.28

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.8e-39  Score=300.00  Aligned_cols=213  Identities=23%  Similarity=0.240  Sum_probs=185.7

Q ss_pred             ccchhhhhHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471          155 GKHEAELALRVNSAAYHGDLYQLKGLIRAGAD---PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  231 (442)
Q Consensus       155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL  231 (442)
                      +..+..|.||||+|+..|+.+++++|++.|++   ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            45667799999999999999999999999988   788999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC-----------------------------------------------CCc--CCCChHH
Q 013471          232 LEAIKCGHDGVTSLLVKEGAS-----------------------------------------------LNV--DDAGSFL  262 (442)
Q Consensus       232 ~~A~~~~~~~iv~~Ll~~g~~-----------------------------------------------~~~--~~~~~~L  262 (442)
                      |+|+..|+.+++++|+++|++                                               ++.  ..+.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            999999999999999998765                                               222  3466999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 013471          263 CTAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  341 (442)
Q Consensus       263 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~  341 (442)
                      |+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            9999999999999999999999999854 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcc
Q 013471          342 LLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEK  381 (442)
Q Consensus       342 ~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  381 (442)
                      +|+++|++...              .+..+.+|++.+...
T Consensus       243 ~Ll~~ga~~~~--------------~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          243 LLRAHGAPEPE--------------DGGDKLSPCSSSGSD  268 (282)
T ss_dssp             HHHHTTCCCCC--------------CC-------------
T ss_pred             HHHHcCCCcCc--------------CCCcccccccccCCc
Confidence            99999996443              344556666665543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2e-38  Score=289.44  Aligned_cols=217  Identities=24%  Similarity=0.264  Sum_probs=202.2

Q ss_pred             ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      .++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            34566777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcC-CCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471          233 EAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  309 (442)
Q Consensus       233 ~A~~~~~~~iv~~Ll~~g-~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  309 (442)
                      +|+..|+.+++++|++.| .+++..+  +.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999998 6776644  5699999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          310 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       310 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++..              ..+..+.+|+|.+...++
T Consensus       163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~--------------~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT--------------LKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--------------CCCTTSCCHHHHSCTTCH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC--------------ccCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998543              334567789999888877

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=297.02  Aligned_cols=212  Identities=25%  Similarity=0.251  Sum_probs=198.0

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  233 (442)
                      ++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN  131 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcC-CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 013471          234 AIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  312 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~~~-~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~  312 (442)
                      |+..|+.+++++|++.|++++.. ++.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999998764 46799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCc
Q 013471          313 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE  380 (442)
Q Consensus       313 ~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  380 (442)
                      +|++++. +..|+||||+|+..|+.+++++|+++|++..              ..+..+.+|+|.+..
T Consensus       212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~--------------~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ--------------AKNAEGKRPVELVPP  264 (285)
T ss_dssp             TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--------------CCCTTSCCGGGGSCT
T ss_pred             CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------------CcCCCCCCHHHHhcC
Confidence            9999995 8899999999999999999999999998533              344566778888874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.7e-38  Score=288.19  Aligned_cols=215  Identities=20%  Similarity=0.226  Sum_probs=197.0

Q ss_pred             ccchhhhhHHHHHHHhcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471          155 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  230 (442)
Q Consensus       155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  230 (442)
                      +..+..|.||||+|+..|+.+++++|++    .|.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            3556778999999999999999999997    799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC----CCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhCh
Q 013471          231 LLEAIKCGHDGVTSLLVKEGA----SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGL  303 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~~g~----~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~  303 (442)
                      ||+|+..|+.+++++|++.+.    +++..  .+.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    55554  46699999999999999999999999999998 889999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       304 ~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..              ..+..+.+|+|.|...++
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--------------LKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--------------CCCTTSCCTTTTCSSHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--------------CcCCCCCCHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999998643              334567789999988776

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-37  Score=280.15  Aligned_cols=196  Identities=28%  Similarity=0.333  Sum_probs=188.3

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  235 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~  235 (442)
                      .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++ +++.++..|.||||+|+
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999987 89999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC
Q 013471          236 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  313 (442)
Q Consensus       236 ~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  313 (442)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999998765  56999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471          314 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  352 (442)
Q Consensus       314 ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~  352 (442)
                      |++++.+|..|+||+++|+..++.+++++|+++|+...+
T Consensus       181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            999999999999999999999999999999999997554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.6e-39  Score=294.96  Aligned_cols=190  Identities=29%  Similarity=0.338  Sum_probs=109.3

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHH
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~  236 (442)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+ +++.++..|.||||+|+.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            4445555555555555555555555555555555555555555555555555555555554 555555555555555555


Q ss_pred             cCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  314 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g  314 (442)
                      .|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            555555555555555555433  345555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471          315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  347 (442)
Q Consensus       315 a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~  347 (442)
                      ++++.+|..|+||+++|+.+|+.+++++|....
T Consensus       214 a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             CCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            555555555555555555555555555555433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-37  Score=283.32  Aligned_cols=196  Identities=27%  Similarity=0.372  Sum_probs=185.1

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  233 (442)
                      .+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  112 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY  112 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471          234 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL  311 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  311 (442)
                      |+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999988755  569999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          312 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       312 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      ++|++++.+|..|+||+++|+..++.+++++|.++|++
T Consensus       193 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          193 TQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            99999999999999999999999999999999998875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.9e-38  Score=304.37  Aligned_cols=243  Identities=21%  Similarity=0.180  Sum_probs=186.3

Q ss_pred             cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC---------
Q 013471          152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---------  222 (442)
Q Consensus       152 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~---------  222 (442)
                      ...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.         
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~   90 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL   90 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence            33445566677777777777777777777777777777777777777777777777777777777765554         


Q ss_pred             -------------------------------------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC
Q 013471          223 -------------------------------------------KDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD  257 (442)
Q Consensus       223 -------------------------------------------~~~~g~tpL~~A~~~~--~~~iv~~Ll~~g~~~~~~~  257 (442)
                                                                 ++..|.||||+|+..|  +.+++++|+++|++++..+
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d  170 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD  170 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence                                                       6667889999999999  8999999999999888765


Q ss_pred             --CChHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q 013471          258 --AGSFLCTAVARGDSDFLKRVLSNGVD-----PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE  330 (442)
Q Consensus       258 --~~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~  330 (442)
                        +.||||+|+..|+.+++++|+++|++     ++.++..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  250 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL  250 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence              56899999999999999999998888     89999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471          331 GRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  405 (442)
Q Consensus       331 A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~  405 (442)
                      |+..|+.+++++|+++|+.........  .......+...+.++++.++..++         .+.+..|+..+.+
T Consensus       251 A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aa~~~~---------~~~v~~ll~~~~~  314 (364)
T 3ljn_A          251 SVRAAMVLLTKELLQKTDVFLIQACPY--HNGTTVLPDRVVWLDFVPAAADPS---------KQEVLQLLQEKLD  314 (364)
T ss_dssp             HHHTCCHHHHHHHHHHSCHHHHHTCTT--BSSSSBCGGGCCCCTTSCSSCCHH---------HHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHHHHcCCchhhhcCcc--cCcccccccccccccchhhhhccC---------HHHHHHHHHHHHH
Confidence            999999999999999987643221110  011222345666778888887776         4445555554433

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.6e-37  Score=295.85  Aligned_cols=210  Identities=27%  Similarity=0.315  Sum_probs=194.7

Q ss_pred             HHhhhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013471          143 LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI  222 (442)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  222 (442)
                      +..+........+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus        40 v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~  119 (351)
T 3utm_A           40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA  119 (351)
T ss_dssp             HHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence            33444445566677788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC----------------------------------------------
Q 013471          223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----------------------------------------------  256 (442)
Q Consensus       223 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~----------------------------------------------  256 (442)
                      ++..|.||||+|+..|+.+++++|+++|++++..                                              
T Consensus       120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  199 (351)
T 3utm_A          120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA  199 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHH
Confidence            9999999999999999999999999999987642                                              


Q ss_pred             ----------CCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCC
Q 013471          257 ----------DAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW  323 (442)
Q Consensus       257 ----------~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~  323 (442)
                                .+.||||.|+..   ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus       200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~  279 (351)
T 3utm_A          200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL  279 (351)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence                      345899999999   5689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471          324 GNTPLDEGRMCGNKNLIKLLEDAECTQLS  352 (442)
Q Consensus       324 g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~  352 (442)
                      |+||||+|+..|+.+++++|+++|+++..
T Consensus       280 g~t~L~~A~~~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          280 GQTALHRAALAGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999996543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-38  Score=290.66  Aligned_cols=214  Identities=22%  Similarity=0.251  Sum_probs=168.1

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCCC--------CCCCCCCCChHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCC
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGAD--------PNKTDYDGRSPLHLATSRGYE-DITLFLIQKGVDINIKDKF  226 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~ga~~~~~~~~  226 (442)
                      ..+..+.++|+.|+..|+.++|++|++.|++        ++..+..|.||||+|+..+.. .++++|+++|++++.+|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            3455678999999999999999999998875        356678899999999988875 5899999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChH
Q 013471          227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY  304 (442)
Q Consensus       227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~  304 (442)
                      |.||||+|+..|+.+++++|++.|++++..+  +.||++.|+..++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999999999988754  56999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          305 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       305 ~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      ++|++|+++|++++.++..|+||||+|+..|+.+++++|+++|++...              .+..+.+|+|.|...++
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~--------------~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV--------------LNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC--------------CCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--------------cCCCCCCHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999986432              34556789999876554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.8e-37  Score=283.59  Aligned_cols=192  Identities=26%  Similarity=0.287  Sum_probs=159.5

Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 013471          167 SAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL  245 (442)
Q Consensus       167 ~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~  245 (442)
                      .+...++.+++++|+++|++++. .|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus        29 ~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  108 (253)
T 1yyh_A           29 SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI  108 (253)
T ss_dssp             -----------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            47788999999999999999865 58999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCC-CCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC
Q 013471          246 LVKEGA-SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  322 (442)
Q Consensus       246 Ll~~g~-~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~  322 (442)
                      |++.+. +++..  .+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       109 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  188 (253)
T 1yyh_A          109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  188 (253)
T ss_dssp             HHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999987 66664  467999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccc
Q 013471          323 WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCS  358 (442)
Q Consensus       323 ~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~  358 (442)
                      .|+||||+|+..|+.+++++|+++|++.........
T Consensus       189 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~  224 (253)
T 1yyh_A          189 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDR  224 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCC
Confidence            999999999999999999999999998766554443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.6e-37  Score=287.52  Aligned_cols=225  Identities=25%  Similarity=0.251  Sum_probs=204.4

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  237 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  237 (442)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCcC------------CCChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHhCh-
Q 013471          238 GHDGVTSLLVKEGASLNVD------------DAGSFLCTAVARGDSDFLKRVLSN-GVDPSSRDYDHRTPLHVAASEGL-  303 (442)
Q Consensus       238 ~~~~iv~~Ll~~g~~~~~~------------~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~-  303 (442)
                      |+.+++++|+++|++++..            .+.||||.|+..|+.+++++|+++ |++++.++..|+||||+|+..++ 
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  195 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence            9999999999999998854            356999999999999999999998 99999999999999999999998 


Q ss_pred             ---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccccccchhhcccCCCcceecCCCCCC
Q 013471          304 ---YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD  379 (442)
Q Consensus       304 ---~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  379 (442)
                         .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++..              ..+..+.+|+|.+.
T Consensus       196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~--------------~~~~~g~t~l~~A~  261 (285)
T 1wdy_A          196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--------------DTDSDGKTALLLAV  261 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT--------------CCCTTSCCHHHHHH
T ss_pred             chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc--------------ccCCCCCcHHHHHH
Confidence               999999999999999999999999999999999999999999 676432              33455667888887


Q ss_pred             ccccccCceEEEccCcHHHHHHHHhh
Q 013471          380 EKVHRRHGIVLWVPHNIEELIKLAVD  405 (442)
Q Consensus       380 ~~~~~~~~~~~~lp~~~~~ll~~~~~  405 (442)
                      ..++         .+.++-|++.|++
T Consensus       262 ~~~~---------~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          262 ELKL---------KKIAELLCKRGAS  278 (285)
T ss_dssp             HTTC---------HHHHHHHHHHSSC
T ss_pred             HcCc---------HHHHHHHHHcCCC
Confidence            7777         6677777776654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8e-37  Score=277.68  Aligned_cols=209  Identities=30%  Similarity=0.352  Sum_probs=193.3

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  239 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~  239 (442)
                      +.+|||.|+..|+.+.+++|++.+.. ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            46799999999999999999988754 67789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCC
Q 013471          240 DGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  317 (442)
Q Consensus       240 ~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~  317 (442)
                      .+++++|+++|++++..+  +.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            999999999999998755  569999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       318 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +.+|..|+||||+|+..|+.+++++|+++|++..              ..+..+.+|+|.+...++
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY--------------IENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCTTSCCHHHHSCHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--------------CCCCCCCCHHHHHHhhHH
Confidence            9999999999999999999999999999998643              234556678888766555

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.8e-36  Score=274.64  Aligned_cols=207  Identities=25%  Similarity=0.243  Sum_probs=186.9

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKG--VDINI-KDKFGNTPLLEAIK  236 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~-~~~~g~tpL~~A~~  236 (442)
                      |.||||.|+..|+.+++++|++.|+++. .++..|.||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            5789999999999999999999998865 48999999999999999999999999999  55555 78999999999999


Q ss_pred             cCCHHHHHHHHHcC--CCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 013471          237 CGHDGVTSLLVKEG--ASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  312 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g--~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~  312 (442)
                      .|+.+++++|+++|  ++++..+  +.||||.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  7766644  5699999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccccccccchhhcccCCCcceecCCCCCCcc
Q 013471          313 AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLE-DAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEK  381 (442)
Q Consensus       313 ~g-a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  381 (442)
                      +| ++++.+|..|+||||+|+..|+.+++++|+ ++|++...              .+..+.+|+|.+...
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~--------------~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--------------VDNKGAKAEDVALNE  218 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--------------BCTTSCBGGGGCSST
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc--------------cCCCCCcHHHHHHHH
Confidence            99 999999999999999999999999999999 88986443              234456677777543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4e-37  Score=281.33  Aligned_cols=200  Identities=21%  Similarity=0.251  Sum_probs=185.1

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC----CCCCCCC
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV----DINIKDK  225 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~~~  225 (442)
                      ....++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++++    +++..+.
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  114 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY  114 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc
Confidence            345566777889999999999999999999999999999999999999999999999999999999988    8899999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhC
Q 013471          226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG  302 (442)
Q Consensus       226 ~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~---~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g  302 (442)
                      .|.||||+|+..|+.+++++|++.|++++..+   +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|
T Consensus       115 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999998755   679999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          303 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       303 ~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      +.+++++|+++|++++.+|..|+||+|+|+..|+.++++.|.+++++
T Consensus       195 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS  241 (241)
T 1k1a_A          195 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS  241 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred             CHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence            99999999999999999999999999999999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.4e-36  Score=266.76  Aligned_cols=188  Identities=26%  Similarity=0.334  Sum_probs=178.4

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  238 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~  238 (442)
                      .+.||||.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            35789999999999999999999876 99999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHH-HcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHhCh-----HHHHHH
Q 013471          239 HDGVTSLLV-KEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGL-----YLMAKL  309 (442)
Q Consensus       239 ~~~iv~~Ll-~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~A~~~g~-----~~iv~~  309 (442)
                      +.+++++|+ ..+.+++..+  +.||||.|+..|+.+++++|+++| ++++.++..|+||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 5566777654  569999999999999999999999 9999999999999999999887     999999


Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471          310 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  347 (442)
Q Consensus       310 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~  347 (442)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.7e-37  Score=289.46  Aligned_cols=198  Identities=21%  Similarity=0.144  Sum_probs=185.3

Q ss_pred             ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      .++..+..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            356778889999999999999999999999999999884  999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCC---ChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471          233 EAIKCGHDGVTSLLVKEGASLNVDDA---GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  309 (442)
Q Consensus       233 ~A~~~~~~~iv~~Ll~~g~~~~~~~~---~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  309 (442)
                      +|+..|+.+++++|+++|++++..+.   .||||+|+..|+.+++++|+++|++.... ..|+||||+|+..|+.+++++
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~  179 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMIL  179 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHH
Confidence            99999999999999999999987654   68999999999999999999999877333 289999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          310 LLEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       310 Ll~~ga~~~~~~~~g~tp-l~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      |+++|++++.+|..|+|| ||+|+..|+.+++++|+++|++....
T Consensus       180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA  224 (285)
T ss_dssp             HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred             HHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            999999999999999998 99999999999999999999976544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.7e-38  Score=285.31  Aligned_cols=196  Identities=22%  Similarity=0.207  Sum_probs=180.1

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGA----DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  231 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL  231 (442)
                      ..+..|.||||+|+..|+.+++++|++.+.    +++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            345678899999999999999999998765    6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC------Cc--CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhC
Q 013471          232 LEAIKCGHDGVTSLLVKEGASL------NV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEG  302 (442)
Q Consensus       232 ~~A~~~~~~~iv~~Ll~~g~~~------~~--~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~A~~~g  302 (442)
                      |+|+..|+.+++++|++.|++.      +.  ..+.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            9999999999999999998753      22  3467999999999999999999999999999997 9999999999999


Q ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          303 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       303 ~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999999999999999999999999999999999999999999755

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.7e-37  Score=283.94  Aligned_cols=192  Identities=21%  Similarity=0.135  Sum_probs=179.1

Q ss_pred             hhHHHHHHHhcCCHH----HHHHHHHcCCCCCC----CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCC------
Q 013471          161 LALRVNSAAYHGDLY----QLKGLIRAGADPNK----TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIK------  223 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~------  223 (442)
                      |.||||.|+..|+.+    ++++|++.|++++.    +|..|.||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            679999999999997    66777789999998    899999999999999   9999999999999887633      


Q ss_pred             -----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---------------CChHHHHHHHcCCHHHHHHHHH---C
Q 013471          224 -----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---------------AGSFLCTAVARGDSDFLKRVLS---N  280 (442)
Q Consensus       224 -----~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~---------------~~~~L~~A~~~g~~~~v~~Ll~---~  280 (442)
                           |..|.||||+|+..|+.+++++|+++|++++..+               +.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 4789999999999999999999999999998865               6799999999999999999999   9


Q ss_pred             CCCCCCCCCCCCcHHHHHHH--hChHH-------HHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 013471          281 GVDPSSRDYDHRTPLHVAAS--EGLYL-------MAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE  344 (442)
Q Consensus       281 g~~~~~~~~~g~t~Lh~A~~--~g~~~-------iv~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~v~~Ll  344 (442)
                      |++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999  78888       999999999999       899999999999999999999999999


Q ss_pred             HcCCCccc
Q 013471          345 DAECTQLS  352 (442)
Q Consensus       345 ~~~a~~~~  352 (442)
                      ++|+....
T Consensus       242 ~~g~~~~~  249 (256)
T 2etb_A          242 QREFSGAA  249 (256)
T ss_dssp             HHHHHHHH
T ss_pred             hCCCCCCC
Confidence            99986543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-36  Score=300.33  Aligned_cols=200  Identities=29%  Similarity=0.367  Sum_probs=142.1

Q ss_pred             ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      .++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            34555666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          233 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       233 ~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      +|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++++++.+..+..|.||||+|+..|+.+++++|
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7777777777777777777766543  45777777777777777777777777777777777777777777777777777


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471          311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  352 (442)
Q Consensus       311 l~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~  352 (442)
                      +++|++++..+..|.||||+|+..|+.+++++|+++|++...
T Consensus       166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  207 (437)
T 1n11_A          166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS  207 (437)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            777777777777777777777777777777777777765443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-35  Score=256.27  Aligned_cols=156  Identities=46%  Similarity=0.645  Sum_probs=131.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i  242 (442)
                      ++|+.||..|+.++|++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999998888777777


Q ss_pred             HHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC
Q 013471          243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  322 (442)
Q Consensus       243 v~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~  322 (442)
                      +++|+++|+                               +++.+|.+|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus        86 v~~Ll~~ga-------------------------------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           86 VKLLISKGA-------------------------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             HHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHCcC-------------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            766666554                               5556677788888888888888888888888888888888


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          323 WGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       323 ~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      .|+||||+|+..|+.+++++|+++||+
T Consensus       135 ~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          135 DGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            888888888888888888888888875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-36  Score=282.41  Aligned_cols=210  Identities=29%  Similarity=0.365  Sum_probs=189.9

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  237 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  237 (442)
                      +..+.|+||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHC-CCC--------------------------CCCCC
Q 013471          238 GHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN-GVD--------------------------PSSRD  288 (442)
Q Consensus       238 ~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~-g~~--------------------------~~~~~  288 (442)
                      |+.+++++|+++|++++..+  +.||||+|+..++.+++++++.. |.+                          ....+
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence            99999999999999988754  56999999999999999887753 333                          23466


Q ss_pred             CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCC
Q 013471          289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPR  368 (442)
Q Consensus       289 ~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~  368 (442)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..              ..+
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--------------~~d  262 (299)
T 1s70_B          197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--------------AVN  262 (299)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------CCC
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC--------------CcC
Confidence            789999999999999999999999999999999999999999999999999999999998533              334


Q ss_pred             cceecCCCCCCcc
Q 013471          369 KCTVFPFHPWDEK  381 (442)
Q Consensus       369 ~~~~~~~h~~~~~  381 (442)
                      ..+.+|+|.+...
T Consensus       263 ~~g~t~l~~A~~~  275 (299)
T 1s70_B          263 KVGQTAFDVADED  275 (299)
T ss_dssp             TTSCCTTTSCCSG
T ss_pred             CCCCCHHHHHHHH
Confidence            5667899988543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-35  Score=274.10  Aligned_cols=203  Identities=26%  Similarity=0.280  Sum_probs=191.5

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC------
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK------  223 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~------  223 (442)
                      .....+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..      
T Consensus        61 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  140 (285)
T 1wdy_A           61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED  140 (285)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHH
Confidence            34556667778999999999999999999999999999999999999999999999999999999999999987      


Q ss_pred             ----CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCC--CChHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCC
Q 013471          224 ----DKFGNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCTAVARGD----SDFLKRVLSNGVDPSSRDYDHR  292 (442)
Q Consensus       224 ----~~~g~tpL~~A~~~~~~~iv~~Ll~~-g~~~~~~~--~~~~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~  292 (442)
                          +..|.||||+|+..|+.+++++|++. |++++..+  +.||||.|+..++    .+++++|+++|++++.++..|+
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~  220 (285)
T 1wdy_A          141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK  220 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC
Confidence                78899999999999999999999998 99988754  5699999999999    9999999999999999999999


Q ss_pred             cHHHHHHHhChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471          293 TPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  352 (442)
Q Consensus       293 t~Lh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~  352 (442)
                      ||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus       221 t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             cHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            99999999999999999999 8999999999999999999999999999999999997654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.6e-37  Score=284.64  Aligned_cols=196  Identities=23%  Similarity=0.319  Sum_probs=153.2

Q ss_pred             cccchhhhhHHHHHHHhcCCHH-HHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLY-QLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      ++..+..+.|||+.|+..++.+ ++++|++.|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.++..|.||+|
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~  124 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLH  124 (269)
T ss_dssp             ------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccc
Confidence            3455667889999999988764 789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          233 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       233 ~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      .|+..++.+++++|++.|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|
T Consensus       125 ~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             cccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999998865  56999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCC
Q 013471          311 LEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAECT  349 (442)
Q Consensus       311 l~~ga~~~~~~~~g~tpl~~A~~~~~-~~~v~~Ll~~~a~  349 (442)
                      +++|+|++.+|..|+||||+|+++++ .+++++|.+.++.
T Consensus       205 l~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          205 LLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             HHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence            99999999999999999999998876 3555555555543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.7e-36  Score=291.38  Aligned_cols=201  Identities=21%  Similarity=0.275  Sum_probs=188.9

Q ss_pred             ccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCCC
Q 013471          149 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG---VDINIKDK  225 (442)
Q Consensus       149 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~~~~~~  225 (442)
                      +....++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|   ++++..+.
T Consensus       154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~  233 (373)
T 2fo1_E          154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  233 (373)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence            344566777888999999999999999999999999999999999999999999999999999999998   89999999


Q ss_pred             CCCcHHHHHHHcC---CHHHHHHHHHcCCCCCcC----------CCChHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCC
Q 013471          226 FGNTPLLEAIKCG---HDGVTSLLVKEGASLNVD----------DAGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDH  291 (442)
Q Consensus       226 ~g~tpL~~A~~~~---~~~iv~~Ll~~g~~~~~~----------~~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g  291 (442)
                      .|.||||+|+..+   +.+++++|+++|++++..          .+.||||+|+..|+.+++++|++++ ++++.+|..|
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            9999999999998   899999999999998752          4679999999999999999999875 9999999999


Q ss_pred             CcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          292 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       292 ~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      +||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|++++++
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999999999999999999999999875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=269.54  Aligned_cols=227  Identities=23%  Similarity=0.231  Sum_probs=171.9

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEA  234 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A  234 (442)
                      ..+..+.|+|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            445566778888888888888888888888888888888888888888888888888888888777544 4478888888


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh-HHHHHHHH
Q 013471          235 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL-YLMAKLLL  311 (442)
Q Consensus       235 ~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~-~~iv~~Ll  311 (442)
                      +..|+.+++++|++.|++++..+  +.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++ .+++++|+
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence            88888888888888888777643  4578888888888888888888888888888888888888886665 77888888


Q ss_pred             HCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEE
Q 013471          312 EAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVL  390 (442)
Q Consensus       312 ~~ga~~~~~~~-~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  390 (442)
                      ++|++++..+. .|.||||+|+..|+.+++++|+++|++....              +..+.+|+|.+...++       
T Consensus       164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--------------~~~g~t~l~~A~~~~~-------  222 (240)
T 3eu9_A          164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ--------------NIKGESALDLAKQRKN-------  222 (240)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB--------------CTTSCBHHHHHHHTTC-------
T ss_pred             hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc--------------CCCCCCHHHHHHHcCc-------
Confidence            88888888776 7888888888888888888888887754322              2334556777666666       


Q ss_pred             EccCcHHHHHHHHhh
Q 013471          391 WVPHNIEELIKLAVD  405 (442)
Q Consensus       391 ~lp~~~~~ll~~~~~  405 (442)
                        .+.++.|++.+++
T Consensus       223 --~~~v~~L~~~~~~  235 (240)
T 3eu9_A          223 --VWMINHLQEARQA  235 (240)
T ss_dssp             --HHHHHHHHHHC--
T ss_pred             --HHHHHHHHHhhhc
Confidence              5556666655443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.5e-37  Score=297.79  Aligned_cols=227  Identities=18%  Similarity=0.178  Sum_probs=200.7

Q ss_pred             cccch-hhhhHHHHHHHhcCCHHHHHHHH--------HcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 013471          154 IGKHE-AELALRVNSAAYHGDLYQLKGLI--------RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD  224 (442)
Q Consensus       154 ~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  224 (442)
                      ++..+ ..|.||||+|+..|+.+++++|+        +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.++
T Consensus       117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~  196 (373)
T 2fo1_E          117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN  196 (373)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence            34444 57899999999999998888776        7899999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCcC--CCChHHHHHHHcC---CHHHHHHHHHCCCCCCC--------CC
Q 013471          225 KFGNTPLLEAIKCGHDGVTSLLVKEG---ASLNVD--DAGSFLCTAVARG---DSDFLKRVLSNGVDPSS--------RD  288 (442)
Q Consensus       225 ~~g~tpL~~A~~~~~~~iv~~Ll~~g---~~~~~~--~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~  288 (442)
                      ..|.||||+|+..|+.+++++|++++   ++++..  .+.||||+|+..+   +.+++++|+++|++++.        .+
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d  276 (373)
T 2fo1_E          197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK  276 (373)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence            99999999999999999999999987   677664  4679999999998   89999999999999986        67


Q ss_pred             CCCCcHHHHHHHhChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCC
Q 013471          289 YDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHP  367 (442)
Q Consensus       289 ~~g~t~Lh~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~  367 (442)
                      ..|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++...              .
T Consensus       277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~--------------~  342 (373)
T 2fo1_E          277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA--------------V  342 (373)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--------------C
T ss_pred             ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC--------------C
Confidence            79999999999999999999999876 99999999999999999999999999999999986433              3


Q ss_pred             CcceecCCCCCCccccccCceEEEccCcHHHHHHHH
Q 013471          368 RKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLA  403 (442)
Q Consensus       368 ~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~  403 (442)
                      +..+.+|+|.|...++         .+.++-|++.+
T Consensus       343 d~~g~t~l~~A~~~g~---------~~iv~~Ll~~~  369 (373)
T 2fo1_E          343 DATDHTARQLAQANNH---------HNIVDIFDRCR  369 (373)
T ss_dssp             CSSSCCHHHHHHHTTC---------HHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCC---------HHHHHHHHhcC
Confidence            3456678888877777         45555555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-35  Score=294.44  Aligned_cols=216  Identities=24%  Similarity=0.294  Sum_probs=132.6

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  233 (442)
                      .+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus       172 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  251 (437)
T 1n11_A          172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL  251 (437)
T ss_dssp             TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            34444445556666666666666666666555555555556666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471          234 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL  311 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  311 (442)
                      |+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|+
T Consensus       252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  331 (437)
T 1n11_A          252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL  331 (437)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            666666666666666666555433  346666666666666666666666666666666666666666666666666666


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          312 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       312 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      ++|++++.+|..|+||||+|+..|+.+++++|+++|+++.              ..+..+.+|+|.+...++
T Consensus       332 ~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~--------------~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--------------EVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCSSSCCHHHHHHHTTC
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC--------------CCCCCCCCHHHHHHHcCc
Confidence            6666666666666666666666666666666666666422              223455566666655544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.6e-35  Score=266.56  Aligned_cols=195  Identities=27%  Similarity=0.368  Sum_probs=184.1

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCc
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNT  229 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t  229 (442)
                      ...++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++| ++++..+..|.|
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  113 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT  113 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCC
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCC
Confidence            4556667778999999999999999999999999999999999999999999999999999999998 899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA  307 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv  307 (442)
                      |||+|+..|+.+++++|+++|++++..+  +.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus       114 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  193 (237)
T 3b7b_A          114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV  193 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH
Confidence            9999999999999999999999988754  56999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          308 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       308 ~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      ++|+++|++++.+|..|+||+|+|+.+|+.+.+..|++
T Consensus       194 ~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876666554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.7e-35  Score=284.02  Aligned_cols=229  Identities=27%  Similarity=0.301  Sum_probs=205.2

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      ....+..+.++||.|+..|+.+.++.|+.. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            344556788999999999999999999876 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------------
Q 013471          233 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD----------------------  288 (442)
Q Consensus       233 ~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------  288 (442)
                      +|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+                      
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            9999999999999999999998865  5699999999999999999999999987654                      


Q ss_pred             --------------------------------CCCCcHHHHHHHh---ChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q 013471          289 --------------------------------YDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM  333 (442)
Q Consensus       289 --------------------------------~~g~t~Lh~A~~~---g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~  333 (442)
                                                      ..|+||||+|+..   +..+++++|+++|++++.+|..|+||||+|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  256 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE  256 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence                                            5577999999998   67899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471          334 CGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  405 (442)
Q Consensus       334 ~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~  405 (442)
                      .|+.+++++|+++|++...              .+..+.+|+|.|...++         .+.++.|++.|++
T Consensus       257 ~g~~~~v~~Ll~~ga~~n~--------------~d~~g~t~L~~A~~~~~---------~~~v~~Ll~~gad  305 (351)
T 3utm_A          257 RAHNDVMEVLHKHGAKMNA--------------LDSLGQTALHRAALAGH---------LQTCRLLLSYGSD  305 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTC--------------CCTTSCCHHHHHHHHTC---------HHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHCCCCCCC--------------cCCCCCCHHHHHHHcCc---------HHHHHHHHHcCCC
Confidence            9999999999999986432              34556778888888777         6677888876654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.4e-36  Score=280.19  Aligned_cols=195  Identities=22%  Similarity=0.190  Sum_probs=175.6

Q ss_pred             ccchhhhhHHHHHHHhcCCHHHHHHHHH----cCCCCC----CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCC---
Q 013471          155 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPN----KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI---  220 (442)
Q Consensus       155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~---  220 (442)
                      +..+..|.||||.|+..|+.++++.|++    .+++++    ..+..|.||||+|+..   |+.+++++|+++|+++   
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            3456678999999999999999998887    466665    4588999999999987   9999999999998753   


Q ss_pred             ----C----CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CChHHHHHHHcCCHHHHHH
Q 013471          221 ----N----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKR  276 (442)
Q Consensus       221 ----~----~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~----------------~~~~L~~A~~~g~~~~v~~  276 (442)
                          +    ..+..|.||||+|+..|+.+++++|+++|++++..+                +.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                2    256789999999999999999999999999998864                6799999999999999999


Q ss_pred             HHH---CCCCCCCCCCCCCcHHHHHHHhCh---------HHHHHHHHHCCCCCC-------CCCCCCCCHHHHHHHcCCH
Q 013471          277 VLS---NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASVF-------TKDRWGNTPLDEGRMCGNK  337 (442)
Q Consensus       277 Ll~---~g~~~~~~~~~g~t~Lh~A~~~g~---------~~iv~~Ll~~ga~~~-------~~~~~g~tpl~~A~~~~~~  337 (442)
                      |++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..|+.
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            999   999999999999999999999998         899999999999997       4899999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 013471          338 NLIKLLEDAECT  349 (442)
Q Consensus       338 ~~v~~Ll~~~a~  349 (442)
                      +++++|+++|+.
T Consensus       247 ~iv~~Ll~~ga~  258 (273)
T 2pnn_A          247 GVLAYILQREIH  258 (273)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCC
Confidence            999999999994

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.5e-35  Score=282.58  Aligned_cols=188  Identities=28%  Similarity=0.331  Sum_probs=127.7

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCC---------------
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDIN---------------  221 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---------------  221 (442)
                      ...+.|+||.|+..|++++|++|+++|+++|.++. .|+||||+|+..|+.++|++|+++|++++               
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            44567788888888888888888888888887764 47888888888888888888888777653               


Q ss_pred             ------------------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC------------CCChHHHHHHHcCCH
Q 013471          222 ------------------IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------DAGSFLCTAVARGDS  271 (442)
Q Consensus       222 ------------------~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~------------~~~~~L~~A~~~g~~  271 (442)
                                        ..+..|.||||+|+..|+.+++++|+++|++++..            .+.||||+|+..|+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence                              34556777888888888888888888877776542            245778888887777


Q ss_pred             HHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhCh----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          272 DFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGL----YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       272 ~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~----~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      +++++|++ .|++++.++..|.|+||.++..+.    .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            77777774 466666666555555555544322    335555555555555555555555555555555555555554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=275.41  Aligned_cols=195  Identities=23%  Similarity=0.306  Sum_probs=180.8

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  230 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  230 (442)
                      ...++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+ .|.||
T Consensus        82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~  160 (285)
T 3d9h_A           82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASP  160 (285)
T ss_dssp             TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCH
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCH
Confidence            45567778889999999999999999999999999999999999999999999999999999999999998654 49999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHH
Q 013471          231 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK  308 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~  308 (442)
                      ||+|+..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|+++|++++. +..|+||||+|+..|+.++++
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999988754  56999999999999999999999999995 889999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Q 013471          309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-ECT  349 (442)
Q Consensus       309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~-~a~  349 (442)
                      +|+++|++++.+|..|+||||+|+  ++.+++++|+++ |++
T Consensus       240 ~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          240 LLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS  279 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence            999999999999999999999999  567999999998 554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.6e-35  Score=267.60  Aligned_cols=211  Identities=24%  Similarity=0.277  Sum_probs=187.6

Q ss_pred             CCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013471          172 GDLYQLKGLIRAGADPNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG  250 (442)
Q Consensus       172 g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g  250 (442)
                      |+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6788999999999998765 899999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCH
Q 013471          251 A-SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP  327 (442)
Q Consensus       251 ~-~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tp  327 (442)
                      . +++..  .+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence            7 56554  46799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471          328 LDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  405 (442)
Q Consensus       328 l~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~  405 (442)
                      ||+|+..|+.+++++|+++|++...              .+..+.+|+|.+...++         .+.++-|++.+..
T Consensus       162 L~~A~~~~~~~~v~~Ll~~ga~~~~--------------~~~~g~t~l~~A~~~~~---------~~i~~~L~~~g~~  216 (223)
T 2f8y_A          162 LFLAAREGSYETAKVLLDHFANRDI--------------TDHMDRLPRDIAQERMH---------HDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC--------------CCTTCCCHHHHHHHTTC---------HHHHHHHHHTTCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcc--------------ccccCCCHHHHHHHhcc---------hHHHHHHHHcCCC
Confidence            9999999999999999999986432              23445678888777777         5566667665544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.3e-35  Score=273.49  Aligned_cols=182  Identities=25%  Similarity=0.269  Sum_probs=160.5

Q ss_pred             cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--------------
Q 013471          154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD--------------  219 (442)
Q Consensus       154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--------------  219 (442)
                      ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++              
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  117 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence            556677899999999999999999999999999999999999999999999999999999998765              


Q ss_pred             ---------------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CChHHH
Q 013471          220 ---------------------------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLC  263 (442)
Q Consensus       220 ---------------------------------~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~---~~~~L~  263 (442)
                                                       ++.++..|.||||+|+..|+.+++++|+++|++++..+   +.||||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (282)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence                                             67788899999999999999999999999999999865   679999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Q 013471          264 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  335 (442)
Q Consensus       264 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  335 (442)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|....
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=9.4e-35  Score=279.62  Aligned_cols=227  Identities=22%  Similarity=0.238  Sum_probs=193.1

Q ss_pred             ccccccchh-hhhHHHHHHHhcCCHHHHHHHHHcCCCCC---------------------------------CCCCCCCh
Q 013471          151 TFHIGKHEA-ELALRVNSAAYHGDLYQLKGLIRAGADPN---------------------------------KTDYDGRS  196 (442)
Q Consensus       151 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------------------------~~~~~g~t  196 (442)
                      ...++..+. .|.||||+|+..|+.+++++|+++|++++                                 .+|..|.|
T Consensus        48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t  127 (337)
T 4g8k_A           48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT  127 (337)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred             CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence            445554443 48999999999999999999999988754                                 45667899


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCC--CChHHH
Q 013471          197 PLHLATSRGYEDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLLVK-EGASLNVDD--AGSFLC  263 (442)
Q Consensus       197 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~----------~~~g~tpL~~A~~~~~~~iv~~Ll~-~g~~~~~~~--~~~~L~  263 (442)
                      |||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++ .|++++..+  +.++++
T Consensus       128 ~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~  207 (337)
T 4g8k_A          128 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  207 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence            999999999999999999999998754          3568999999999999999999996 599998865  458888


Q ss_pred             HHHHcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Q 013471          264 TAVARGD----SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKN  338 (442)
Q Consensus       264 ~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~  338 (442)
                      .++..+.    ..++++|+++|++++.++..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+
T Consensus       208 ~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~  287 (337)
T 4g8k_A          208 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK  287 (337)
T ss_dssp             HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH
Confidence            8776544    4688999999999999999999999999999999999999985 8999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471          339 LIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  405 (442)
Q Consensus       339 ~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~  405 (442)
                      +|++|+++|++....                   .|+|.|...++         .+.++-|++.|++
T Consensus       288 iv~~Ll~~GAd~n~~-------------------~~L~~A~~~~~---------~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          288 IAELLCKRGASTDCG-------------------DLVMTARRNYD---------HSLVKVLLSHGAK  326 (337)
T ss_dssp             HHHHHHTTSCSSTTC-------------------CHHHHHHHTTC---------HHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCCCCCC-------------------CHHHHHHHcCC---------HHHHHHHHHCcCC
Confidence            999999999964321                   15666666666         5567777776654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.6e-34  Score=261.03  Aligned_cols=201  Identities=25%  Similarity=0.288  Sum_probs=185.1

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN  228 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  228 (442)
                      ....++..+..|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  110 (240)
T 3eu9_A           31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGC  110 (240)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            335566677789999999999999999999999999987655 4599999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCC-HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhChH
Q 013471          229 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD-SDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEGLY  304 (442)
Q Consensus       229 tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~A~~~g~~  304 (442)
                      ||||+|+..|+.+++++|+++|++++..+  +.||||.|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.
T Consensus       111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~  190 (240)
T 3eu9_A          111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT  190 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCH
Confidence            99999999999999999999999988754  5699999997776 8999999999999999997 999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          305 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       305 ~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                      +++++|+++|++++.+|..|+||+++|+..|+.+++++|+++++..
T Consensus       191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999998753

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.3e-35  Score=274.81  Aligned_cols=193  Identities=20%  Similarity=0.152  Sum_probs=174.9

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHH----HcCCCCCCCC----CCCChHHHHHH---HcCCHHHHHHHHHcCCC---------
Q 013471          160 ELALRVNSAAYHGDLYQLKGLI----RAGADPNKTD----YDGRSPLHLAT---SRGYEDITLFLIQKGVD---------  219 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~ga~---------  219 (442)
                      .+.++||.|+..|+.+.++.|+    +.|++++..+    ..|.||||+|+   ..|+.+++++|+++|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            3678999999999999655555    4899998665    77999999999   77999999999998754         


Q ss_pred             --CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CChHHHHHHHcCCHHHHHHHHH--
Q 013471          220 --INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKRVLS--  279 (442)
Q Consensus       220 --~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~----------------~~~~L~~A~~~g~~~~v~~Ll~--  279 (442)
                        .+..|..|.||||+|+..|+.+++++|+++|++++..+                +.||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              34555689999999999999999999999999999876                7799999999999999999999  


Q ss_pred             -CCCCCCCCCCCCCcHHHHHHHhCh---------HHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHH
Q 013471          280 -NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKL  342 (442)
Q Consensus       280 -~g~~~~~~~~~g~t~Lh~A~~~g~---------~~iv~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~v~~  342 (442)
                       +|++++.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  243 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH  243 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence             999999999999999999998887         79999999999998       6799999999999999999999999


Q ss_pred             HHHcCCCccc
Q 013471          343 LEDAECTQLS  352 (442)
Q Consensus       343 Ll~~~a~~~~  352 (442)
                      |+++|+....
T Consensus       244 Ll~~g~~~~~  253 (260)
T 3jxi_A          244 IIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHhCCCccc
Confidence            9999986544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.9e-34  Score=260.16  Aligned_cols=188  Identities=22%  Similarity=0.191  Sum_probs=174.8

Q ss_pred             ccchhhhhHHHHHHHhcCCHHHHHHHHHcC--CCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCc
Q 013471          155 GKHEAELALRVNSAAYHGDLYQLKGLIRAG--ADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKG--VDINIKDKFGNT  229 (442)
Q Consensus       155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~t  229 (442)
                      +..+..|.||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+..|+.+++++|+++|  ++++.++..|.|
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t  109 (228)
T 2dzn_A           30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  109 (228)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCC
Confidence            446778899999999999999999999999  55555 7889999999999999999999999998  899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHhChHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLM  306 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~A~~~g~~~i  306 (442)
                      |||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~  189 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  189 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999998765  569999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          307 AKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       307 v~~Ll-~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      +++|+ ++|++++.+|..|+||+++|+..   +++++|++
T Consensus       190 v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          190 AVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            99999 89999999999999999999654   56777765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-34  Score=271.01  Aligned_cols=195  Identities=27%  Similarity=0.349  Sum_probs=175.5

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  230 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  230 (442)
                      ...++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  142 (299)
T 1s70_B           63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP  142 (299)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            35566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCC----------------------------cCCCChHHHHHHHcCCHHHHHHHHHCC
Q 013471          231 LLEAIKCGHDGVTSLLVKE-GASLN----------------------------VDDAGSFLCTAVARGDSDFLKRVLSNG  281 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~~-g~~~~----------------------------~~~~~~~L~~A~~~g~~~~v~~Ll~~g  281 (442)
                      ||+|+..++.++++.++.. +.+++                            ...+.||||+|+..|+.+++++|+++|
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  222 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence            9999999999999877753 44332                            135679999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       282 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+......+.+++.+
T Consensus       223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999977554444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.3e-34  Score=270.40  Aligned_cols=193  Identities=17%  Similarity=0.166  Sum_probs=179.4

Q ss_pred             cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CcH
Q 013471          152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG-NTP  230 (442)
Q Consensus       152 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g-~tp  230 (442)
                      ..++..  .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..| .||
T Consensus        55 ~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~  132 (285)
T 3kea_A           55 ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS  132 (285)
T ss_dssp             GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred             CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence            344444  37999999999999999999999999999999999999999999999999999999999999999999 799


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcC-CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHhChHHHHH
Q 013471          231 LLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP-LHVAASEGLYLMAK  308 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~~g~~~~~~-~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-Lh~A~~~g~~~iv~  308 (442)
                      ||+|+..|+.+++++|+++|++.... .+.||||+|+..|+.+++++|+++|++++.++..|+|| ||+|+..|+.++++
T Consensus       133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            99999999999999999999988555 67799999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                      +|+++|++++.+|.       .|+..|+.+++++|+++|++..+.
T Consensus       213 ~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          213 ALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             HHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence            99999999999883       567899999999999999865443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=263.66  Aligned_cols=189  Identities=21%  Similarity=0.251  Sum_probs=178.0

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRAGAD--PNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI-  235 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~-  235 (442)
                      ...+++|.|+..|+++.++.+++.+.+  +|.+|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+ 
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            345678999999999999999988766  88999999999999999999999999999998 99999999999999999 


Q ss_pred             ----HcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471          236 ----KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  309 (442)
Q Consensus       236 ----~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  309 (442)
                          ..++.+++++|++.|.+.+..+  +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence                6688999999999998877654  6799999999999999999999999999999999999999999999999999


Q ss_pred             HHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          310 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       310 Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      |++ +|++++.+|..|+||||+|+..|+.+++++|++++.
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999 899999999999999999999999999999999764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.1e-31  Score=231.87  Aligned_cols=159  Identities=35%  Similarity=0.514  Sum_probs=133.6

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  237 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  237 (442)
                      ...+.++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            34467889999999999999999999988888888899999999999999999999998888888888888888888777


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCC
Q 013471          238 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  317 (442)
Q Consensus       238 ~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~  317 (442)
                      |+.+++++|+++|                               ++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus        91 ~~~~~~~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           91 GHLEIVEVLLKNG-------------------------------ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             TCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7766666666554                               555667778899999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471          318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  347 (442)
Q Consensus       318 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~  347 (442)
                      +.+|..|+||+|+|+..|+.+++++|+++|
T Consensus       140 ~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          140 NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999998865

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.7e-32  Score=239.92  Aligned_cols=161  Identities=29%  Similarity=0.370  Sum_probs=124.4

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHH
Q 013471          188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTA  265 (442)
Q Consensus       188 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A  265 (442)
                      |.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            4455566666666666666666666666666666666666666666666666666666666666655543  34666666


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          266 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       266 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      +..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.+++++|++
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            66777777777777788888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q 013471          346 AEC  348 (442)
Q Consensus       346 ~~a  348 (442)
                      +|.
T Consensus       189 ~~~  191 (192)
T 2rfm_A          189 VRR  191 (192)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            763

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=5.7e-32  Score=231.73  Aligned_cols=157  Identities=27%  Similarity=0.394  Sum_probs=127.9

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      ..||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4578888888888888888888888888888888888888888 888888888888888888888888887777776666


Q ss_pred             HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC-CCC
Q 013471          241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFT  319 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~-~~~  319 (442)
                      +++++|+++                               |++++.++..|+||||+|+..|+.+++++|+++|++ ++.
T Consensus        84 ~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  132 (162)
T 1ihb_A           84 DTLQTLLEF-------------------------------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH  132 (162)
T ss_dssp             HHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred             HHHHHHHHc-------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC
Confidence            666655555                               555667777889999999999999999999999887 588


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          320 KDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       320 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      +|..|+||||+|+..|+.+++++|+++||+
T Consensus       133 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          133 RNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            888899999999999999999999998874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=5.2e-32  Score=234.49  Aligned_cols=166  Identities=26%  Similarity=0.354  Sum_probs=110.0

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      .||||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            4688999999999999999988877 788888899999999999999999999999999888888888888888888887


Q ss_pred             HHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471          241 GVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  318 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~  318 (442)
                      +++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++.
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF  162 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            77777777766655432  2344444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCCCCCCH
Q 013471          319 TKDRWGNTP  327 (442)
Q Consensus       319 ~~~~~g~tp  327 (442)
                      .++..|.||
T Consensus       163 ~~~~~~~~p  171 (172)
T 3v30_A          163 QSNLVPADP  171 (172)
T ss_dssp             CC-------
T ss_pred             cccCCCCCC
Confidence            444444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=1.7e-31  Score=230.05  Aligned_cols=160  Identities=27%  Similarity=0.336  Sum_probs=124.5

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      |.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            55677777777777777777777777777777777777777777777777777777777776666666666666665555


Q ss_pred             HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCC
Q 013471          241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  320 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~  320 (442)
                      +++++|+                               ++|++++.++..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        83 ~~v~~Ll-------------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  131 (167)
T 3v31_A           83 DIVKMLL-------------------------------DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE  131 (167)
T ss_dssp             HHHHHHH-------------------------------HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHH-------------------------------HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            5555554                               555666778888999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          321 DRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       321 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      |..|+||+|+|+..|+.+++++|++++++..
T Consensus       132 ~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          132 TDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.9e-32  Score=248.64  Aligned_cols=181  Identities=22%  Similarity=0.249  Sum_probs=167.5

Q ss_pred             ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCC
Q 013471          153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD------INIKDKF  226 (442)
Q Consensus       153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~  226 (442)
                      .++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++      ++..+..
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  116 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence            4566677899999999999999999999999999999999999999999999999999999999986      4677889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCcC---CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh
Q 013471          227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL  303 (442)
Q Consensus       227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~---~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~  303 (442)
                      |.||||+|+..|+.+++++|+++|++++..   .+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus       117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence            999999999999999999999999999886   45799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCC--CCCCCCCCHHHHHHH
Q 013471          304 YLMAKLLLEAGASVF--TKDRWGNTPLDEGRM  333 (442)
Q Consensus       304 ~~iv~~Ll~~ga~~~--~~~~~g~tpl~~A~~  333 (442)
                      .+++++|+++|++..  .++..|.||.+.+..
T Consensus       197 ~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          197 TRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             HHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             hHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            999999999999876  788889998775544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.1e-32  Score=261.02  Aligned_cols=179  Identities=19%  Similarity=0.177  Sum_probs=110.5

Q ss_pred             cccccccc-chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC---HHHHHHHHHcC-CCCCCC
Q 013471          149 DITFHIGK-HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY---EDITLFLIQKG-VDINIK  223 (442)
Q Consensus       149 ~~~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-a~~~~~  223 (442)
                      +....++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+   .++++.|++++ ++++.+
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~  197 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  197 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence            34445555 56666667777777677777777766666666666666677777776666   55666666654 556666


Q ss_pred             CCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCcCC--CChHHHHHHHcCCHHHHHHH
Q 013471          224 DKFGNTPLLEAIK----CGHDGVTSLLVKE--------------------GASLNVDD--AGSFLCTAVARGDSDFLKRV  277 (442)
Q Consensus       224 ~~~g~tpL~~A~~----~~~~~iv~~Ll~~--------------------g~~~~~~~--~~~~L~~A~~~g~~~~v~~L  277 (442)
                      +..|.||||+|+.    .|+.+++++|++.                    |++++..+  +.||||.|+.      +++|
T Consensus       198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L  271 (327)
T 1sw6_A          198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI  271 (327)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred             CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence            6666677776666    6666666666655                    55555433  3466666664      6666


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Q 013471          278 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  335 (442)
Q Consensus       278 l~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  335 (442)
                      +++  +++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+++|
T Consensus       272 l~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          272 IAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            665  46666666777777777777777777777777777776667777776666543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.3e-31  Score=234.82  Aligned_cols=165  Identities=25%  Similarity=0.279  Sum_probs=156.9

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  229 (442)
                      .....+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus        24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  103 (192)
T 2rfm_A           24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT  103 (192)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence            34455677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA  307 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv  307 (442)
                      |||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            9999999999999999999999998865  56999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCC
Q 013471          308 KLLLEAG  314 (442)
Q Consensus       308 ~~Ll~~g  314 (442)
                      ++|+++|
T Consensus       184 ~~Ll~~~  190 (192)
T 2rfm_A          184 KIFTEVR  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9999865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.3e-30  Score=221.30  Aligned_cols=151  Identities=32%  Similarity=0.442  Sum_probs=129.5

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      ..++|+.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4578999999999999999999888876 577889999999999999999999999998888888888888888777776


Q ss_pred             HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCC
Q 013471          241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  320 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~  320 (442)
                      +++++|+++|                               ++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        81 ~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  129 (153)
T 1awc_B           81 NIVEVLLKHG-------------------------------ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHHHTTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            6666665554                               556677788999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHH
Q 013471          321 DRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       321 ~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                      |..|+||+|+|+..|+.+++++|
T Consensus       130 ~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          130 SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999887

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=5.3e-32  Score=263.23  Aligned_cols=166  Identities=27%  Similarity=0.342  Sum_probs=133.7

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHH
Q 013471          184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC  263 (442)
Q Consensus       184 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~  263 (442)
                      +.+++..|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..++.||||
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~   89 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIH   89 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHH
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999888877777777


Q ss_pred             HHHHcCCHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHHHhC--hHHHHHHHHHCCCCCCCC
Q 013471          264 TAVARGDSDFLKRVLSN----GVDPSS-----------------RDYDHRTPLHVAASEG--LYLMAKLLLEAGASVFTK  320 (442)
Q Consensus       264 ~A~~~g~~~~v~~Ll~~----g~~~~~-----------------~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~ga~~~~~  320 (442)
                      +|+..|+.+++++|+++    |++++.                 .+..|.||||+|+..|  +.+++++|+++|++++.+
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~  169 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK  169 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence            77777777777777776    665555                 6667777777777777  777777777777777777


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          321 DRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       321 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      |..|+||||+|+..|+.+++++|+++|++
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            77777777777777777777777777765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=4.9e-31  Score=227.19  Aligned_cols=136  Identities=29%  Similarity=0.374  Sum_probs=120.1

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  230 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  230 (442)
                      ...++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  105 (167)
T 3v31_A           26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP  105 (167)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCH
Confidence            35567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      ||+|+..|+.+++++|+++|                               ++++.++..|+||||+|+..|+.+++++|
T Consensus       106 L~~A~~~~~~~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  154 (167)
T 3v31_A          106 LLYAVHGNHVKCVKMLLESG-------------------------------ADPTIETDSGYNSMDLAVALGYRSVQQVI  154 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcC-------------------------------CCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            99988877777776666655                               45556777889999999999999999999


Q ss_pred             HHCCCCC
Q 013471          311 LEAGASV  317 (442)
Q Consensus       311 l~~ga~~  317 (442)
                      ++++++.
T Consensus       155 ~~~~~~~  161 (167)
T 3v31_A          155 ESHLLKL  161 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=9.3e-32  Score=248.36  Aligned_cols=199  Identities=19%  Similarity=0.164  Sum_probs=174.7

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCc------
Q 013471          193 DGRSPLHLATSRGYED----ITLFLIQKGVDINI----KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNV------  255 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~----~~~~g~tpL~~A~~~---~~~~iv~~Ll~~g~~~~~------  255 (442)
                      .|+||||.|+..|+.+    ++++|+++|++++.    ++..|.||||+|+..   |+.+++++|++.|++++.      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4889999999999997    66777789999998    899999999999999   999999999999887663      


Q ss_pred             -------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHhChHHHHHHHHH---
Q 013471          256 -------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD-------------HRTPLHVAASEGLYLMAKLLLE---  312 (442)
Q Consensus       256 -------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~Lh~A~~~g~~~iv~~Ll~---  312 (442)
                             ..+.||||+|+..|+.+++++|+++|++++.++..             |+||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                   34779999999999999999999999999999886             9999999999999999999999   


Q ss_pred             CCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          313 AGASVFTKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       313 ~ga~~~~~~~~g~tpl~~A~~--~~~~~-------~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +|++++.+|..|+||||+|+.  .++.+       ++++|+++|++......       .....+..+.+|+|.|...++
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~-------~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ-------LEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC-------GGGCCCTTSCCHHHHHHHTTC
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc-------cccccCCCCCCHHHHHHHhCC
Confidence            999999999999999999999  88888       99999999986532110       113445667889999988888


Q ss_pred             ccCceEEEccCcHHHHHHHHhhhc
Q 013471          384 RRHGIVLWVPHNIEELIKLAVDKL  407 (442)
Q Consensus       384 ~~~~~~~~lp~~~~~ll~~~~~k~  407 (442)
                               .+.++.|++.+....
T Consensus       234 ---------~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          234 ---------IEIFRHILQREFSGA  248 (256)
T ss_dssp             ---------HHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHhCCCCCC
Confidence                     778888888776643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=7.8e-31  Score=225.47  Aligned_cols=159  Identities=35%  Similarity=0.472  Sum_probs=132.8

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  236 (442)
                      +..+.|+||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            45678899999999999999998874 56677778888899999999999999999999999998888888888888887


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  316 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~  316 (442)
                      .|+.+++++|+++                               |++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        85 ~~~~~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           85 YGHYEVAELLVKH-------------------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             TTCHHHHHHHHHT-------------------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHHhC-------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7776666666655                               455667778899999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       317 ~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      ++.+|..|+||+|+|+. |+.+++++|+++||
T Consensus       134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999999999776 88999999998876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.2e-30  Score=226.01  Aligned_cols=159  Identities=25%  Similarity=0.290  Sum_probs=150.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCC
Q 013471          194 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD  270 (442)
Q Consensus       194 g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~  270 (442)
                      +.||||.|+..|+.++++.|++.+.+ ++.++..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            56899999999999999999999887 88999999999999999999999999999999988754  5699999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                      .+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             cc
Q 013471          351 LS  352 (442)
Q Consensus       351 ~~  352 (442)
                      ..
T Consensus       162 ~~  163 (172)
T 3v30_A          162 FQ  163 (172)
T ss_dssp             SC
T ss_pred             hc
Confidence            43

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-31  Score=256.85  Aligned_cols=197  Identities=18%  Similarity=0.174  Sum_probs=160.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH--  239 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~--  239 (442)
                      +.+|.|+..+..++++.|++.|+++|. +|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            346888888889999999999999999 89999999999999999999999999999999999999999999999998  


Q ss_pred             -HHHHHHHHHcC-CCCCcC--CCChHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 013471          240 -DGVTSLLVKEG-ASLNVD--DAGSFLCTAVA----RGDSDFLKRVLSN--------------------GVDPSSRDYDH  291 (442)
Q Consensus       240 -~~iv~~Ll~~g-~~~~~~--~~~~~L~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~~~~g  291 (442)
                       .++++.|++.+ ++++..  .+.||||+|+.    .|+.+++++|++.                    |++++.++..|
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             67788888776 555554  46799999999    8999999999987                    89999999999


Q ss_pred             CcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcce
Q 013471          292 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCT  371 (442)
Q Consensus       292 ~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~  371 (442)
                      +||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++|+++|++..              ..+..+
T Consensus       259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~--------------~~d~~G  316 (327)
T 1sw6_A          259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--------------IANKSG  316 (327)
T ss_dssp             -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--------------CCCTTS
T ss_pred             CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--------------ccCCCC
Confidence            999999996      8999998  689999999999999999999999999999999643              334556


Q ss_pred             ecCCCCCCcc
Q 013471          372 VFPFHPWDEK  381 (442)
Q Consensus       372 ~~~~h~~~~~  381 (442)
                      .+|+|.|...
T Consensus       317 ~TpL~~A~~~  326 (327)
T 1sw6_A          317 LRPVDFGAGL  326 (327)
T ss_dssp             CCGGGGTCC-
T ss_pred             CCHHHHHHhc
Confidence            7788887654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=6.1e-30  Score=227.04  Aligned_cols=171  Identities=26%  Similarity=0.417  Sum_probs=157.6

Q ss_pred             HhhhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCCC
Q 013471          144 KQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINI  222 (442)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~  222 (442)
                      ..+.......++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+ ..+++++.
T Consensus        22 ~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  101 (201)
T 3hra_A           22 KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK  101 (201)
T ss_dssp             HHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred             HHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccccc
Confidence            33334444466777788999999999999999999999999999999999999999999999999999999 56789999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCC--CChHHHHHHHcCC-----HHHHHHHHHCCCCCCCCCCCCCcH
Q 013471          223 KDKFGNTPLLEAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCTAVARGD-----SDFLKRVLSNGVDPSSRDYDHRTP  294 (442)
Q Consensus       223 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~g-~~~~~~~--~~~~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~  294 (442)
                      .+..|.||||+|+..|+.+++++|+++| ++++..+  +.||||+|+..++     .+++++|+++|++++.+|..|+||
T Consensus       102 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  181 (201)
T 3hra_A          102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA  181 (201)
T ss_dssp             CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCH
Confidence            9999999999999999999999999999 8887754  5699999999998     999999999999999999999999


Q ss_pred             HHHHHHhChHHHHHHHHHCC
Q 013471          295 LHVAASEGLYLMAKLLLEAG  314 (442)
Q Consensus       295 Lh~A~~~g~~~iv~~Ll~~g  314 (442)
                      ||+|+..|+.+++++|+++|
T Consensus       182 l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          182 MDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=2.8e-30  Score=225.23  Aligned_cols=161  Identities=25%  Similarity=0.314  Sum_probs=116.6

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  238 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~  238 (442)
                      .+.++|+.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            356788888888888888888887 5678888888888888888888888888888888888888888888888888877


Q ss_pred             CHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471          239 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  318 (442)
Q Consensus       239 ~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~  318 (442)
                      +.+++++|+++|+++                               +.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus        84 ~~~~v~~Ll~~g~~~-------------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  132 (179)
T 3f6q_A           84 HRDIVQKLLQYKADI-------------------------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS  132 (179)
T ss_dssp             CHHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred             CHHHHHHHHHcCCCC-------------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            777777776666554                               4455556666666666666666666666666666


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          319 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       319 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      .+|..|+||+++|+..++.+++++|+++|++..
T Consensus       133 ~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          133 ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             BCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred             hhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            666666666666666666666666666665543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=8.6e-30  Score=216.74  Aligned_cols=153  Identities=25%  Similarity=0.429  Sum_probs=130.8

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  239 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~  239 (442)
                      +.|+||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            56789999999999999999988 34888888889999999 88899999999999999998888888888888887777


Q ss_pred             HHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCC
Q 013471          240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  319 (442)
Q Consensus       240 ~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~  319 (442)
                      .+++++|+++|                               ++++.+|..|+||||+|+..|+.+++++|+++ ++++.
T Consensus        81 ~~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           81 LDTLKVLVEHG-------------------------------ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             HHHHHHHHHTT-------------------------------CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred             HHHHHHHHHcC-------------------------------CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence            66666666554                               55666777899999999999999999999998 99999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 013471          320 KDRWGNTPLDEGRMCGNKNLIKLLEDA  346 (442)
Q Consensus       320 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~  346 (442)
                      +|..|+||||+|+..|+.+++++|+++
T Consensus       129 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          129 RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.4e-31  Score=247.02  Aligned_cols=206  Identities=16%  Similarity=0.158  Sum_probs=171.6

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCC
Q 013471          183 AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ----KGVDIN----IKDKFGNTPLLEAIKC---GHDGVTSLLVKEGA  251 (442)
Q Consensus       183 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~----~~~~~g~tpL~~A~~~---~~~~iv~~Ll~~g~  251 (442)
                      .++..+..|..|.||||+|+..|+.++|+.|++    .+++++    ..+..|.||||+|+..   |+.+++++|++.|+
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            456667788999999999999999999998887    566665    4588999999999987   99999999999986


Q ss_pred             CC-------Cc------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--------------CCCcHHHHHHHhChH
Q 013471          252 SL-------NV------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY--------------DHRTPLHVAASEGLY  304 (442)
Q Consensus       252 ~~-------~~------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~g~t~Lh~A~~~g~~  304 (442)
                      +.       +.      ..+.||||+|+..|+.+++++|+++|++++.++.              .|+||||+|+..|+.
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL  161 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence            53       21      3577999999999999999999999999999987              799999999999999


Q ss_pred             HHHHHHHH---CCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCcccccccccchhhcccCCCccee
Q 013471          305 LMAKLLLE---AGASVFTKDRWGNTPLDEGRMCGN---------KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTV  372 (442)
Q Consensus       305 ~iv~~Ll~---~ga~~~~~~~~g~tpl~~A~~~~~---------~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~  372 (442)
                      +++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++......       .....+..+.
T Consensus       162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~-------~~~~~d~~g~  234 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK-------LEEITNRKGL  234 (273)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCC-------GGGCCCTTSC
T ss_pred             HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccc-------cccccCCCCC
Confidence            99999999   999999999999999999999998         8999999999986543211       0123456677


Q ss_pred             cCCCCCCccccccCceEEEccCcHHHHHHHHh
Q 013471          373 FPFHPWDEKVHRRHGIVLWVPHNIEELIKLAV  404 (442)
Q Consensus       373 ~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~  404 (442)
                      +|+|.|...++         .+.++.|++.|+
T Consensus       235 TpL~~A~~~g~---------~~iv~~Ll~~ga  257 (273)
T 2pnn_A          235 TPLALAASSGK---------IGVLAYILQREI  257 (273)
T ss_dssp             CHHHHHHHTTC---------HHHHHHHHHHHT
T ss_pred             CHHHHHHHhCh---------HHHHHHHHHCCC
Confidence            89999988888         778899999887

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.6e-33  Score=255.90  Aligned_cols=185  Identities=21%  Similarity=0.235  Sum_probs=171.3

Q ss_pred             ccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 013471          155 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  234 (442)
Q Consensus       155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A  234 (442)
                      +..+..+.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcC---CCChHHHHH--HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471          235 IKCGHDGVTSLLVKEGASLNVD---DAGSFLCTA--VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  309 (442)
Q Consensus       235 ~~~~~~~iv~~Ll~~g~~~~~~---~~~~~L~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  309 (442)
                      +..|+.+++++|++.|++++..   ++.||||+|  +..|+.+++++|+++|++++.++..|.||++.++..+.   .++
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~  171 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DEL  171 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBC
T ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---ccc
Confidence            9999999999999999999875   567999999  99999999999999999999999999999997665543   367


Q ss_pred             HHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHH
Q 013471          310 LLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKL  342 (442)
Q Consensus       310 Ll~~ga~--~~~~~~~g~tpl~~A~~~~~~~~v~~  342 (442)
                      |++.|++  ++.+|..|+||||+|+..|+.++|+.
T Consensus       172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             CBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             CccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            8899998  77899999999999999999988865

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=7.9e-30  Score=222.36  Aligned_cols=134  Identities=22%  Similarity=0.268  Sum_probs=108.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCH
Q 013471          193 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS  271 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~  271 (442)
                      .+.++||.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|++                       
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----------------------   60 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-----------------------   60 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH-----------------------
Confidence            466778888888888888888876 56677777777777777776666655555554                       


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       272 ~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                              +|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus        61 --------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  132 (179)
T 3f6q_A           61 --------RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS  132 (179)
T ss_dssp             --------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred             --------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence                    455666778899999999999999999999999999999999999999999999999999999999999876


Q ss_pred             cccccc
Q 013471          352 SEFHYC  357 (442)
Q Consensus       352 ~~~~~~  357 (442)
                      ......
T Consensus       133 ~~~~~g  138 (179)
T 3f6q_A          133 ICNKYG  138 (179)
T ss_dssp             BCCTTS
T ss_pred             hhccCC
Confidence            554433

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=6.6e-29  Score=214.15  Aligned_cols=139  Identities=37%  Similarity=0.505  Sum_probs=120.0

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  229 (442)
                      ....++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus        26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~T  105 (169)
T 4gpm_A           26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT  105 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCC
Confidence            34667778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  309 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  309 (442)
                      |||+|+..|+.+++++|+++|                               ++++.+|.+|+||||+|+..|+.+++++
T Consensus       106 pLh~A~~~g~~~~v~~Ll~~g-------------------------------ad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A          106 PLHHAAENGHKEVVKLLISKG-------------------------------ADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-------------------------------CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999998887777776666555                               5556777889999999999999999999


Q ss_pred             HHHCCCCCCC
Q 013471          310 LLEAGASVFT  319 (442)
Q Consensus       310 Ll~~ga~~~~  319 (442)
                      |+++||+++.
T Consensus       155 Ll~~GA~ie~  164 (169)
T 4gpm_A          155 LEKQGGWLEH  164 (169)
T ss_dssp             HHTC------
T ss_pred             HHHCCCCcCC
Confidence            9999998864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.9e-30  Score=237.23  Aligned_cols=176  Identities=16%  Similarity=0.083  Sum_probs=105.4

Q ss_pred             hhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013471          159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  238 (442)
Q Consensus       159 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~  238 (442)
                      ..|.||||.|+..|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            35788999999999999999999999988754 67889999999999999999999999999999999999999999988


Q ss_pred             CHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--HHhChHHHHHHHHHC
Q 013471          239 HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVA--ASEGLYLMAKLLLEA  313 (442)
Q Consensus       239 ~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~Lh~A--~~~g~~~iv~~Ll~~  313 (442)
                      +.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            8888888888887776643  34667777666666677776666666666665555 666666  566666666666666


Q ss_pred             CCCCCCC---------CCCCCCHHHHHHHcC
Q 013471          314 GASVFTK---------DRWGNTPLDEGRMCG  335 (442)
Q Consensus       314 ga~~~~~---------~~~g~tpl~~A~~~~  335 (442)
                      |++++..         +..+.+|.++|...|
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCC
Confidence            6665554         334555555555444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=1.1e-29  Score=234.92  Aligned_cols=203  Identities=17%  Similarity=0.153  Sum_probs=172.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHH----HHHcCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCCC------
Q 013471          191 DYDGRSPLHLATSRGYEDITLF----LIQKGVDINIKD----KFGNTPLLEAI---KCGHDGVTSLLVKEGASL------  253 (442)
Q Consensus       191 ~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~----~~g~tpL~~A~---~~~~~~iv~~Ll~~g~~~------  253 (442)
                      +..|+|+||.|++.|+.++++.    |++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|++.      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4568999999999999995554    445899999766    77999999999   679999999999987542      


Q ss_pred             -----CcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHHhChHHHHHHHHH
Q 013471          254 -----NVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD--------------YDHRTPLHVAASEGLYLMAKLLLE  312 (442)
Q Consensus       254 -----~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~Lh~A~~~g~~~iv~~Ll~  312 (442)
                           +..  .+.||||+|+..|+.+++++|+++|++++.++              ..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                 222  56799999999999999999999999999998              689999999999999999999999


Q ss_pred             ---CCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCc
Q 013471          313 ---AGASVFTKDRWGNTPLDEGRMCGN---------KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE  380 (442)
Q Consensus       313 ---~ga~~~~~~~~g~tpl~~A~~~~~---------~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  380 (442)
                         +|++++.+|..|+||||+|+..++         .+++++|+++|++......       .....+..+.+|+|.|..
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~-------~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN-------LEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC-------GGGCCCTTSCCHHHHHHH
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc-------hhhcccCCCCCHHHHHHH
Confidence               999999999999999999999888         7999999999986532211       113455677889999998


Q ss_pred             cccccCceEEEccCcHHHHHHHHhhhcCC
Q 013471          381 KVHRRHGIVLWVPHNIEELIKLAVDKLDF  409 (442)
Q Consensus       381 ~~~~~~~~~~~lp~~~~~ll~~~~~k~~~  409 (442)
                      .++         .+.++.|++-+...-..
T Consensus       235 ~g~---------~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          235 TGK---------IGIFQHIIRREIADAAA  254 (260)
T ss_dssp             TTC---------HHHHHHHHHHHHHHHC-
T ss_pred             cCC---------HHHHHHHHHhCCCcccc
Confidence            888         77888999887765544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=9e-29  Score=231.11  Aligned_cols=162  Identities=23%  Similarity=0.279  Sum_probs=153.9

Q ss_pred             ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCC
Q 013471          153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLAT-----SRGYEDITLFLIQKGVDINIKDKF  226 (442)
Q Consensus       153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~  226 (442)
                      .++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+     ..++.+++++|++.|++++..+..
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA  182 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence            366778889999999999999999999999998 99999999999999999     678999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhCh
Q 013471          227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGL  303 (442)
Q Consensus       227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~  303 (442)
                      |.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999998755  5699999999999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHCC
Q 013471          304 YLMAKLLLEAG  314 (442)
Q Consensus       304 ~~iv~~Ll~~g  314 (442)
                      .+++++|++++
T Consensus       263 ~~iv~~Ll~~~  273 (276)
T 4hbd_A          263 SEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcc
Confidence            99999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=5.5e-29  Score=227.53  Aligned_cols=162  Identities=22%  Similarity=0.225  Sum_probs=120.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHc
Q 013471          191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR  268 (442)
Q Consensus       191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~  268 (442)
                      +..|.||||.|++.|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+  +.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            346999999999999999999999999999864 788999999999999999999999999988755  56999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHH
Q 013471          269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEG--RMCGNKNLIKLLED  345 (442)
Q Consensus       269 g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~-tpl~~A--~~~~~~~~v~~Ll~  345 (442)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||+|+|  +..|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998877 999999  88899999999999


Q ss_pred             cCCCcccc
Q 013471          346 AECTQLSE  353 (442)
Q Consensus       346 ~~a~~~~~  353 (442)
                      +|++....
T Consensus       161 ~~a~~~~~  168 (239)
T 1ycs_B          161 VQEKMGIM  168 (239)
T ss_dssp             HHHHTTTT
T ss_pred             hhhccccc
Confidence            99876543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.2e-28  Score=202.23  Aligned_cols=134  Identities=28%  Similarity=0.415  Sum_probs=112.9

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHH
Q 013471          184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC  263 (442)
Q Consensus       184 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~  263 (442)
                      +++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++           
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----------   69 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-----------   69 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-----------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-----------
Confidence            46788888899999999999999999999999999999988888888888888 877777777766554           


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 013471          264 TAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL  342 (442)
Q Consensus       264 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~  342 (442)
                                          ++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus        70 --------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~  129 (136)
T 1d9s_A           70 --------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY  129 (136)
T ss_dssp             --------------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred             --------------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence                                4556667 8888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCC
Q 013471          343 LEDAECT  349 (442)
Q Consensus       343 Ll~~~a~  349 (442)
                      |+++|++
T Consensus       130 Ll~~Gad  136 (136)
T 1d9s_A          130 LHAATGD  136 (136)
T ss_dssp             HHHHHCC
T ss_pred             HHHcCCC
Confidence            8888874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=8e-29  Score=217.16  Aligned_cols=161  Identities=23%  Similarity=0.334  Sum_probs=141.4

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAI  235 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  235 (442)
                      +.++|+.|+..|+.+.++.+++.+.  +..+ ..|+||||+|+..|+.    +++++|+++|++++.++..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4568999999999999999998774  4455 6799999999999975    5999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHH-----hChHHHHHH
Q 013471          236 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVAAS-----EGLYLMAKL  309 (442)
Q Consensus       236 ~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~Lh~A~~-----~g~~~iv~~  309 (442)
                      ..++.++.+                         ..+++++|+++|+++|.+|..|+ ||||+|+.     .++.+++++
T Consensus        84 ~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           84 QGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             HHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             HcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence            988754422                         24678888888999999999999 99999998     445789999


Q ss_pred             HHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          310 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       310 Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      |++ +|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            999 999999999999999999999999999999998654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=7.9e-28  Score=204.83  Aligned_cols=141  Identities=22%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCh-HHHHHH
Q 013471          190 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS-FLCTAV  266 (442)
Q Consensus       190 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~-~L~~A~  266 (442)
                      .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++..+  +.| |||+|+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            3445555666666666666666655555555555555556665553 555555555555555555443  234 666666


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q 013471          267 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  331 (442)
Q Consensus       267 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A  331 (442)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            66666667777777777888888999999999999999999999999999999999999998744

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=3e-29  Score=227.69  Aligned_cols=192  Identities=16%  Similarity=0.063  Sum_probs=157.0

Q ss_pred             HHHHHHcCCCCCCCC---CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 013471          177 LKGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL  253 (442)
Q Consensus       177 v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~  253 (442)
                      ++.|+++|++++..+   ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            467889998876554   55778899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHhChHHHHHHHHHCCCCCCCCCCCCCCHH
Q 013471          254 NVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVA--ASEGLYLMAKLLLEAGASVFTKDRWGNTPL  328 (442)
Q Consensus       254 ~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A--~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl  328 (442)
                      +..+  +.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            8765  5699999999999999999999999999987 6999999999  999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          329 DEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       329 ~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +.++..+.   .++|++.|++.            +....+..+.+|+|.|...++
T Consensus       161 ~~~~~~~~---~~~ll~~ga~~------------~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          161 WDYSAEFG---DELSFREGESV------------TVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             SCBCCSST---TBCCBCTTCEE------------EEEESSCTTCSSEEEEEETTE
T ss_pred             HHHhhccc---cccCccccccc------------cccccCCCcccHHHHHHHcCC
Confidence            86544432   24555555431            123345567789998887776

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=5.6e-27  Score=194.71  Aligned_cols=132  Identities=24%  Similarity=0.322  Sum_probs=117.0

Q ss_pred             ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHH
Q 013471          153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPL  231 (442)
Q Consensus       153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL  231 (442)
                      .++..+..+.||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            345666778999999999999999999999999999999999999999999 9999999999999999999998 89999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471          232 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL  311 (442)
Q Consensus       232 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  311 (442)
                      |+|+..|+.+++++|+++|                               ++++.+|..|+||||+|+..|+.+++++|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~g-------------------------------a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAG-------------------------------ARLDVCDAWGRLPVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTC-------------------------------CCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC-------------------------------CCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9988887777777666655                               455667778899999999999999999999


Q ss_pred             HCCCC
Q 013471          312 EAGAS  316 (442)
Q Consensus       312 ~~ga~  316 (442)
                      ++|+|
T Consensus       132 ~~Gad  136 (136)
T 1d9s_A          132 AATGD  136 (136)
T ss_dssp             HHHCC
T ss_pred             HcCCC
Confidence            88875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=6.3e-26  Score=188.35  Aligned_cols=62  Identities=35%  Similarity=0.481  Sum_probs=34.0

Q ss_pred             CCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471          286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  347 (442)
Q Consensus       286 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~  347 (442)
                      .+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        75 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            34445555555555555555555555555555555555555555555555555555555543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.5e-25  Score=182.82  Aligned_cols=126  Identities=44%  Similarity=0.666  Sum_probs=93.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHH
Q 013471          193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD  272 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~  272 (442)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|                      
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----------------------   58 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG----------------------   58 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC----------------------
Confidence            3677777777777777777777777777777777777777777666665555555544                      


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          273 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       273 ~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                               ++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|+.+++++|+++|++
T Consensus        59 ---------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           59 ---------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             ---------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ---------CCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                     44555666777888888888888888888888888777777788888888888888888888877763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.8e-28  Score=237.86  Aligned_cols=181  Identities=15%  Similarity=0.013  Sum_probs=149.1

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHH
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLE  233 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~  233 (442)
                      .+.||||.|+..|+.+++++|+++|+..   +..+..|.||||+|+..|+.++|++|+++|+++   +..+.+ .||||+
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            3569999999999999999999998732   234556889999999999999999999999863   333333 899999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCc--C--CCChHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHH
Q 013471          234 AIKCGHDGVTSLLVKEGASLNV--D--DAGSFLCTAV-ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK  308 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~~--~--~~~~~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~  308 (442)
                      |+..|+.+++++|+++|++++.  .  .+.||||+|+ ..|+.+++++|+++|+       .|.||||+|+..|+.++++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHH
Confidence            9999999999999999998654  3  3569999999 9999999999999875       3899999999999999999


Q ss_pred             HHHHCCCCCC-------------------------------------------------------------CCCCCCCCH
Q 013471          309 LLLEAGASVF-------------------------------------------------------------TKDRWGNTP  327 (442)
Q Consensus       309 ~Ll~~ga~~~-------------------------------------------------------------~~~~~g~tp  327 (442)
                      +|+++|++++                                                             ...+.+.||
T Consensus       243 lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~  322 (376)
T 2aja_A          243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  322 (376)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence            9998765321                                                             112346788


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC
Q 013471          328 LDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       328 l~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      ||+|+..|+.+++++|++.|+
T Consensus       323 L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          323 LRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHHHHcCcHHHHHHHHcChH
Confidence            999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.2e-26  Score=197.52  Aligned_cols=142  Identities=22%  Similarity=0.277  Sum_probs=117.2

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHH
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT-PLLEA  234 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-pL~~A  234 (442)
                      ..+..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            44556789999999999999999999999999999999999999995 99999999999999999999999999 99999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 013471          235 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA  298 (442)
Q Consensus       235 ~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A  298 (442)
                      +..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999998864  56999999999999999999999999999999999998744

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.7e-25  Score=185.68  Aligned_cols=128  Identities=31%  Similarity=0.429  Sum_probs=105.3

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  235 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  235 (442)
                      .....+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999988888888888888


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC
Q 013471          236 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  314 (442)
Q Consensus       236 ~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g  314 (442)
                      ..|+.+++++|+++|                               ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g-------------------------------~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHG-------------------------------ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcC-------------------------------CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            877776666666555                               455567778888888888888888888888875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.2e-26  Score=192.86  Aligned_cols=134  Identities=37%  Similarity=0.477  Sum_probs=103.7

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHH
Q 013471          184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC  263 (442)
Q Consensus       184 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~  263 (442)
                      |+|+ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|             
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-------------   66 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-------------   66 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-------------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-------------
Confidence            5667 67788888888888888888888888888888888888888888887777766666666555             


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471          264 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       264 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                                        ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..+..+++++|
T Consensus        67 ------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           67 ------------------ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             ------------------CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             ------------------CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence                              45556677888888888888888888888888888888888888999888888888888888


Q ss_pred             HHcCCC
Q 013471          344 EDAECT  349 (442)
Q Consensus       344 l~~~a~  349 (442)
                      .+.+++
T Consensus       129 ~~~~~s  134 (137)
T 3c5r_A          129 EKNESS  134 (137)
T ss_dssp             ------
T ss_pred             cccccC
Confidence            776654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=4.8e-26  Score=196.39  Aligned_cols=148  Identities=29%  Similarity=0.336  Sum_probs=121.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCC
Q 013471          191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD  270 (442)
Q Consensus       191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~  270 (442)
                      ...+.|+|+.|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|                    
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--------------------   70 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--------------------   70 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--------------------
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------------
Confidence            345678888999888999998888888888888888888888888777766666666554                    


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                                 ++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus        71 -----------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           71 -----------ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             -----------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             -----------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                       556677888999999999999999999999999999999999999999999999999999999999864


Q ss_pred             ccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          351 LSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      ..              .+..+.+|+|.+...++
T Consensus       140 ~~--------------~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E          140 NA--------------QDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             TC--------------CCTTSCCHHHHHHHTTC
T ss_pred             CC--------------cCCCCCCHHHHHHHhCC
Confidence            32              23445567777666555

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=3.1e-26  Score=195.83  Aligned_cols=158  Identities=22%  Similarity=0.214  Sum_probs=128.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHH
Q 013471          193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD  272 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~  272 (442)
                      ...||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++                       
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-----------------------   59 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-----------------------   59 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-----------------------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-----------------------
Confidence            45688888888888888888888888888888888888888776 666666666555                       


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471          273 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  352 (442)
Q Consensus       273 ~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~  352 (442)
                              |++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.. 
T Consensus        60 --------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-  130 (162)
T 1ihb_A           60 --------GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV-  130 (162)
T ss_dssp             --------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT-
T ss_pred             --------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC-
Confidence                    45566778899999999999999999999999999999999999999999999999999999999998632 


Q ss_pred             ccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHh
Q 013471          353 EFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAV  404 (442)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~  404 (442)
                                  ...+..+.+|+|.+...++         .+.++.|++.|+
T Consensus       131 ------------~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~GA  161 (162)
T 1ihb_A          131 ------------GHRNHKGDTACDLARLYGR---------NEVVSLMQANGA  161 (162)
T ss_dssp             ------------TCCCTTSCCHHHHHHHTTC---------HHHHHHHHHTC-
T ss_pred             ------------CCcCCCCCcHHHHHHHcCC---------HHHHHHHHHhCC
Confidence                        1233455678888877776         566666666544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=4.7e-28  Score=234.93  Aligned_cols=175  Identities=13%  Similarity=0.042  Sum_probs=153.0

Q ss_pred             hhHHHHHHHh-cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHH
Q 013471          161 LALRVNSAAY-HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLEAIK  236 (442)
Q Consensus       161 ~~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~  236 (442)
                      +.+++++|.. .++.+.+++++++|.+       +.||||+|++.|+.++|++|+++|+..   +..+..|.||||+|+.
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            4567888877 5889999999998865       459999999999999999999999833   2344578899999999


Q ss_pred             cCCHHHHHHHHHcCCC-----CCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HhChHHHHH
Q 013471          237 CGHDGVTSLLVKEGAS-----LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS--RDYDHRTPLHVAA-SEGLYLMAK  308 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~-----~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~Lh~A~-~~g~~~iv~  308 (442)
                      .|+.+++++|+++|++     ++..+ .||||+|+..|+.+++++|+++|++++.  .|..|+||||+|+ ..|+.++|+
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            9999999999999975     34444 7999999999999999999999999887  8889999999999 999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                      +|+++|++       |.||+++|+.+|+.+++++|+++|++.
T Consensus       217 ~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          217 FLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             HHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             HHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence            99998853       889999999999999999999998754

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.6e-25  Score=180.50  Aligned_cols=125  Identities=46%  Similarity=0.637  Sum_probs=111.8

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      |.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471          241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  316 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~  316 (442)
                      +++++|+++|+                               +++.++..|+||||+|+..|+.+++++|+++|+|
T Consensus        82 ~~~~~Ll~~g~-------------------------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLEAGA-------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCC-------------------------------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            77777666554                               4556677888888888888888888888888875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=8.3e-27  Score=203.98  Aligned_cols=140  Identities=26%  Similarity=0.273  Sum_probs=104.4

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK  236 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~  236 (442)
                      +..|.||||.|+..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4567788888888888888888877 77777777788888888888888888888888888877776 667777777776


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  316 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~  316 (442)
                      .|+.+++++|+++                               |++++.+|..|+||||+|+..++.            
T Consensus       120 ~~~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~tpl~~A~~~~~~------------  156 (183)
T 3deo_A          120 YVRPEVVEALVEL-------------------------------GADIEVEDERGLTALELAREILKT------------  156 (183)
T ss_dssp             TTCHHHHHHHHHH-------------------------------TCCTTCCCTTSCCHHHHHHHHHHT------------
T ss_pred             cCcHHHHHHHHHc-------------------------------CCCCcCCCCCCCCHHHHHHHhccC------------
Confidence            6666666655555                               455566777888888888875433            


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 013471          317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  346 (442)
Q Consensus       317 ~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~  346 (442)
                           ..+.+|+++|+..|+.+++++|.++
T Consensus       157 -----~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 -----TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             -----CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----cccccHHHHHHHcCHHHHHHHHHHh
Confidence                 3467888888888888888888764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=6.1e-25  Score=188.53  Aligned_cols=145  Identities=26%  Similarity=0.292  Sum_probs=114.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcC
Q 013471          191 DYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG  269 (442)
Q Consensus       191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g  269 (442)
                      +..|.||||.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+                      
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----------------------   62 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----------------------   62 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH----------------------
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHH----------------------
Confidence            45567777777777777777777773 5556666666667766666665555555555                      


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          270 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       270 ~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                               ++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        63 ---------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           63 ---------QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             ---------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ---------hcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                     55566677888999999999999999999999999999999999999999999999999999999999986


Q ss_pred             cccccccccchhhcccCCCcceecCCCCCCc
Q 013471          350 QLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE  380 (442)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  380 (442)
                      ...              .+..+.+|+|.+..
T Consensus       134 ~~~--------------~~~~g~t~l~~a~~  150 (165)
T 3twr_A          134 PTK--------------KNRDGNTPLDLVKD  150 (165)
T ss_dssp             TTC--------------CCTTSCCTGGGSCT
T ss_pred             Ccc--------------cCCCCCChhHhHhc
Confidence            432              33456678888655

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=7.3e-25  Score=185.67  Aligned_cols=143  Identities=29%  Similarity=0.334  Sum_probs=109.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHH
Q 013471          195 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL  274 (442)
Q Consensus       195 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v  274 (442)
                      .||||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++                               
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v-------------------------------   50 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTT-------------------------------   50 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHH-------------------------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHH-------------------------------
Confidence            466777777777777777777766654 355566666666655555555                               


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 013471          275 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF  354 (442)
Q Consensus       275 ~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~  354 (442)
                      ++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++...  
T Consensus        51 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--  128 (153)
T 1awc_B           51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT--  128 (153)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--
Confidence            455555566777888999999999999999999999999999999999999999999999999999999999986433  


Q ss_pred             ccccchhhcccCCCcceecCCCCCCcccc
Q 013471          355 HYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                                  .+..+.+|+|.+...++
T Consensus       129 ------------~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B          129 ------------QSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             ------------CCTTSCCHHHHHHHTTC
T ss_pred             ------------cCCCCCCHHHHHHHcCC
Confidence                        23344566666655544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.4e-24  Score=198.89  Aligned_cols=143  Identities=25%  Similarity=0.265  Sum_probs=120.0

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK  236 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~  236 (442)
                      +..|.||||.|+..|+.+++++|++ |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4578899999999999999999999 99999999999999999999999999999999999998888 778888888877


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  316 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~  316 (442)
                      .|+.+++++|+++                               |++++.+|..|+||||+|+..++             
T Consensus       121 ~g~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~t~l~~A~~~~~-------------  156 (244)
T 3ui2_A          121 YVRPEVVEALVEL-------------------------------GADIEVEDERGLTALELAREILK-------------  156 (244)
T ss_dssp             TTCHHHHHHHHHT-------------------------------TCCTTCCCTTCCCHHHHHHHHHT-------------
T ss_pred             cCCHHHHHHHHHC-------------------------------CCCCCCCCCCCCcHHHHHHHHHh-------------
Confidence            7776666666555                               45566778889999999986322             


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       317 ~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                          ...+.|||++|+..|+.+++++|++++..
T Consensus       157 ----~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          157 ----TTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ----TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ----ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                25688999999999999999999987654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.7e-24  Score=204.32  Aligned_cols=140  Identities=23%  Similarity=0.155  Sum_probs=97.6

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCC------CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNK------TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPL  231 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~tpL  231 (442)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34567777777777777777777777666      466677777777765   667777777777777777777777776


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471          232 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL  311 (442)
Q Consensus       232 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  311 (442)
                      |+|+..|+.+++++|                               +++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus       231 h~A~~~g~~~~v~~L-------------------------------l~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll  279 (301)
T 2b0o_E          231 HYAALYNQPDCLKLL-------------------------------LKGRALVGTVNEAGETALDIARKKHHKECEELLE  279 (301)
T ss_dssp             HHHHHTTCHHHHHHH-------------------------------HHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH-------------------------------HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            666666555555555                               4555666778888999999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCH
Q 013471          312 EAGASVFTKDRWGNTPLDEGRMCGNK  337 (442)
Q Consensus       312 ~~ga~~~~~~~~g~tpl~~A~~~~~~  337 (442)
                      ++|++      .|.||||+|+..|+.
T Consensus       280 ~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          280 QAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHH------TTSSCCC--------
T ss_pred             HhcCC------CCCChhHHHHhcCCc
Confidence            99886      478999999988864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=2.6e-24  Score=197.05  Aligned_cols=118  Identities=21%  Similarity=0.188  Sum_probs=106.5

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  229 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  229 (442)
                      ...++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus        67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t  146 (244)
T 3ui2_A           67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT  146 (244)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence            55677788889999999999999999999999999999998 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  309 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  309 (442)
                      |||+|+..++                                                ...+.||||+|+..|+.+++++
T Consensus       147 ~l~~A~~~~~------------------------------------------------~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          147 ALELAREILK------------------------------------------------TTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HHHHHHHHHT------------------------------------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh------------------------------------------------ccCCCCHHHHHHHcChHHHHHH
Confidence            9999985221                                                1357899999999999999999


Q ss_pred             HHHCCCC
Q 013471          310 LLEAGAS  316 (442)
Q Consensus       310 Ll~~ga~  316 (442)
                      |++++.+
T Consensus       179 L~~~~~~  185 (244)
T 3ui2_A          179 LEGQVFE  185 (244)
T ss_dssp             HHHHHEE
T ss_pred             HHHhccc
Confidence            9987654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=5.8e-24  Score=185.85  Aligned_cols=88  Identities=24%  Similarity=0.211  Sum_probs=82.8

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  229 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  229 (442)
                      ...++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t  145 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT  145 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCC
Confidence            55677788899999999999999999999999999999998 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 013471          230 PLLEAIKCG  238 (442)
Q Consensus       230 pL~~A~~~~  238 (442)
                      |||+|+..+
T Consensus       146 pl~~A~~~~  154 (183)
T 3deo_A          146 ALELAREIL  154 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998743

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=1e-23  Score=179.03  Aligned_cols=130  Identities=29%  Similarity=0.405  Sum_probs=114.9

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  230 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  230 (442)
                      ....+..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP  104 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            34566677789999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      ||+|+..|+.+++++|++. +                               +++.+|..|.||||+|+..|+.+++++|
T Consensus       105 L~~A~~~~~~~~v~~Ll~~-~-------------------------------~~~~~~~~g~t~l~~A~~~~~~~~v~~L  152 (156)
T 1bd8_A          105 IHLAVQEGHTAVVSFLAAE-S-------------------------------DLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHTT-S-------------------------------CTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHhChHHHHHHHHhc-c-------------------------------CCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            9999988888877777765 4                               4556677888888888888888888888


Q ss_pred             HHC
Q 013471          311 LEA  313 (442)
Q Consensus       311 l~~  313 (442)
                      +++
T Consensus       153 l~~  155 (156)
T 1bd8_A          153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=4.3e-24  Score=173.94  Aligned_cols=110  Identities=30%  Similarity=0.311  Sum_probs=69.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCH
Q 013471          192 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS  271 (442)
Q Consensus       192 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~  271 (442)
                      ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++                      
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------------   62 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK----------------------   62 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT----------------------
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc----------------------
Confidence            3456666666666666666666666666666666666666666555555444444443                      


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q 013471          272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  332 (442)
Q Consensus       272 ~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~  332 (442)
                               |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|.
T Consensus        63 ---------g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           63 ---------GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             ---------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             ---------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence                     3444455666777777777777777777777777777777777777777773

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.1e-24  Score=190.89  Aligned_cols=137  Identities=15%  Similarity=0.054  Sum_probs=119.7

Q ss_pred             hhhhHHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC
Q 013471          159 AELALRVNSAAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGY------EDITLFLIQKGVDINIKDKFGN  228 (442)
Q Consensus       159 ~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~------~~~v~~Ll~~ga~~~~~~~~g~  228 (442)
                      ..|.||||+|+..|+.    +++++|+++|+++|.+|..|+||||+|+..|+      .+++++|+++|++++.+|..|.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            6799999999999985    59999999999999999999999999999987      6889999999999999999999


Q ss_pred             -cHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhChHHH
Q 013471          229 -TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLM  306 (442)
Q Consensus       229 -tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~~~i  306 (442)
                       ||||+|+..+..+                          .++.+++++|++ +|++++.+|..|+||||+|+..|+.++
T Consensus       116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence             9999998855421                          123467788888 889999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCC
Q 013471          307 AKLLLEAGASVFTKD  321 (442)
Q Consensus       307 v~~Ll~~ga~~~~~~  321 (442)
                      |++|.++..+.+.++
T Consensus       170 v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          170 LKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999998765555544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.4e-24  Score=194.29  Aligned_cols=137  Identities=20%  Similarity=0.269  Sum_probs=88.7

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAI  235 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~  235 (442)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+||..|+.+++++|+++ |++++.+|..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            344566777777777777777777777777777777777777777777777777777777 7777777777777777776


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCC
Q 013471          236 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA  315 (442)
Q Consensus       236 ~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga  315 (442)
                      ..|+.+++++|+++|                               ++++.+|..|+||||+|+..|+.++++.|+++|+
T Consensus       149 ~~~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          149 WKGYADIVQLLLAKG-------------------------------ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHTCHHHHHHHHHHT-------------------------------CCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHcC-------------------------------CCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            666665555555444                               4455666777888888888888888888888877


Q ss_pred             CCCCCCCCC
Q 013471          316 SVFTKDRWG  324 (442)
Q Consensus       316 ~~~~~~~~g  324 (442)
                      +.+..+..|
T Consensus       198 ~~~~~~~~~  206 (222)
T 3ehr_A          198 VRTLSNAED  206 (222)
T ss_dssp             ---------
T ss_pred             hhhccchhh
Confidence            776665543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=2.5e-24  Score=178.79  Aligned_cols=129  Identities=24%  Similarity=0.334  Sum_probs=110.3

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  236 (442)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  316 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~  316 (442)
                      .|+.+++++|+++|                               ++++.+|..|.||||+|+..+..+++++|.+.+..
T Consensus        86 ~~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           86 NGHVDIVKLLLSYG-------------------------------ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             TTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             cCCHHHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            77777766666554                               55567788899999999999999998888776543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.4e-23  Score=170.87  Aligned_cols=119  Identities=33%  Similarity=0.440  Sum_probs=101.6

Q ss_pred             hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471          158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  237 (442)
Q Consensus       158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  237 (442)
                      +..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471          238 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA  307 (442)
Q Consensus       238 ~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv  307 (442)
                      |+.+++++|+++|                               ++++.+|..|+||||+|+..+..+++
T Consensus        84 ~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           84 GHVSCVKLLLSKG-------------------------------ADKTVKGPDGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             TCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcC-------------------------------CCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence            8777777666655                               45556777888999988655554443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=7.4e-24  Score=191.03  Aligned_cols=132  Identities=23%  Similarity=0.254  Sum_probs=110.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCC
Q 013471          191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD  270 (442)
Q Consensus       191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~  270 (442)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.                     
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------  128 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ---------------------  128 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS---------------------
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC---------------------
Confidence            56689999999999999999999999999999999999999999888887777777655                     


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471          271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  350 (442)
Q Consensus       271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~  350 (442)
                               .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|++.++..
T Consensus       129 ---------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          129 ---------PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             ---------TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             ---------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence                     14566778889999999999999999999999999999999999999999999999999999999999875


Q ss_pred             cc
Q 013471          351 LS  352 (442)
Q Consensus       351 ~~  352 (442)
                      ..
T Consensus       200 ~~  201 (222)
T 3ehr_A          200 TL  201 (222)
T ss_dssp             --
T ss_pred             hc
Confidence            43

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.1e-22  Score=189.82  Aligned_cols=191  Identities=16%  Similarity=0.065  Sum_probs=144.5

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEA  234 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A  234 (442)
                      .+..+.++++.+...|+..+.+++...-..... +-..+....    .....-..+++...- ...+.......++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            344566788999999998777766433222111 111111221    111222233433321 11222223345789999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCc--------CCCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh
Q 013471          235 IKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL  303 (442)
Q Consensus       235 ~~~~~~~iv~~Ll~~g~~~~~--------~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~  303 (442)
                      +..|+.+.++.+++.|++++.        ..+.||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence            999999999999999988653        3467999999999   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       304 ~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999998643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=191.49  Aligned_cols=140  Identities=26%  Similarity=0.151  Sum_probs=120.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc--------CCCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCC
Q 013471          224 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHR  292 (442)
Q Consensus       224 ~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~--------~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~  292 (442)
                      .....++|+.|+..|+.+.++.|++.|++++.        ..+.||||+|+..   |+.+++++|+++|++++.+|..|+
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            34456889999999999999999999998875        2456899999987   899999999999999999999999


Q ss_pred             cHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCccee
Q 013471          293 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTV  372 (442)
Q Consensus       293 t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~  372 (442)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++                    .+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------------------~g~  287 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------------------TFA  287 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------------------TTS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------------------CCC
Confidence            999999999999999999999999999999999999999999999999999998874                    245


Q ss_pred             cCCCCCCcccc
Q 013471          373 FPFHPWDEKVH  383 (442)
Q Consensus       373 ~~~h~~~~~~~  383 (442)
                      +|+|.|+..++
T Consensus       288 tpLh~A~~~g~  298 (301)
T 2b0o_E          288 FPLHVDYSWVI  298 (301)
T ss_dssp             SCCC-------
T ss_pred             ChhHHHHhcCC
Confidence            78998887766

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=7.1e-22  Score=190.79  Aligned_cols=143  Identities=29%  Similarity=0.315  Sum_probs=87.5

Q ss_pred             hhHHHHHHHhc-CCHHHHHHHHHcCCCCCCCC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471          161 LALRVNSAAYH-GDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  237 (442)
Q Consensus       161 ~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  237 (442)
                      +.|+||.|+.. |++++++.|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45677777777 77777777777777777666  6677777777777777777777777777777777777776666666


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC---
Q 013471          238 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG---  314 (442)
Q Consensus       238 ~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g---  314 (442)
                      |+.+++++|+                               ++|++++.+|..|+||||+|+..|+.+++++|++++   
T Consensus       279 g~~~~v~~LL-------------------------------~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          279 GHTGLACLFL-------------------------------KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             TCHHHHHHHH-------------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred             CcHHHHHHHH-------------------------------HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            5555555554                               445556677778888888888888888888888765   


Q ss_pred             CCCCCCCCCCCCHHHHHHHc
Q 013471          315 ASVFTKDRWGNTPLDEGRMC  334 (442)
Q Consensus       315 a~~~~~~~~g~tpl~~A~~~  334 (442)
                      ++....+..+.|+++++...
T Consensus       328 ~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          328 AEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             --------------------
T ss_pred             ccccccCCCCCCHHHHHHHH
Confidence            33444555677777766554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=2.7e-21  Score=180.36  Aligned_cols=131  Identities=20%  Similarity=0.173  Sum_probs=109.7

Q ss_pred             cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCC------CCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCC
Q 013471          156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADP------NKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKF  226 (442)
Q Consensus       156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~  226 (442)
                      .......++|+.|+..|+.+.++.+++.|+++      +..+..|.||||+|+..   |+.+++++|+++|++++.+|..
T Consensus       125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~  204 (278)
T 1dcq_A          125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK  204 (278)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred             cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence            34445667899999999999999999999884      44578899999999998   8899999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHH
Q 013471          227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM  306 (442)
Q Consensus       227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~i  306 (442)
                      |.||||+|+..|+.+++++|+++|                               ++++.+|..|+||||+|+..|+.++
T Consensus       205 g~TpLh~A~~~g~~~~v~~Ll~~g-------------------------------ad~~~~d~~g~tpL~~A~~~~~~~~  253 (278)
T 1dcq_A          205 GSTALHYCCLTDNAECLKLLLRGK-------------------------------ASIEIANESGETPLDIAKRLKHEHC  253 (278)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-------------------------------CCCCCccCCCCCHHHHHHHcCCHHH
Confidence            999998888877777766666555                               5566777889999999999999999


Q ss_pred             HHHHHHCCCCC
Q 013471          307 AKLLLEAGASV  317 (442)
Q Consensus       307 v~~Ll~~ga~~  317 (442)
                      +++|+++|++.
T Consensus       254 v~~Ll~~ga~~  264 (278)
T 1dcq_A          254 EELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHcCCCC
Confidence            99999988753

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.1e-21  Score=151.28  Aligned_cols=92  Identities=39%  Similarity=0.533  Sum_probs=85.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Q 013471          258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  337 (442)
Q Consensus       258 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  337 (442)
                      +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56888888888888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 013471          338 NLIKLLEDAECT  349 (442)
Q Consensus       338 ~~v~~Ll~~~a~  349 (442)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999873

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.1e-21  Score=151.33  Aligned_cols=92  Identities=42%  Similarity=0.586  Sum_probs=87.3

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 013471          241 GVTSLLVKEGAS  252 (442)
Q Consensus       241 ~iv~~Ll~~g~~  252 (442)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=5.8e-21  Score=184.43  Aligned_cols=125  Identities=26%  Similarity=0.267  Sum_probs=96.3

Q ss_pred             CChHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCC
Q 013471          194 GRSPLHLATSR-GYEDITLFLIQKGVDINIKD--KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD  270 (442)
Q Consensus       194 g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~--~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~  270 (442)
                      +.|+||.|+.. |+.++++.|+++|++++..+  ..|.||                               ||+|+..|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~Tp-------------------------------Lh~Aa~~g~  247 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATP-------------------------------LIQATAANS  247 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCH-------------------------------HHHHHHTTC
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCH-------------------------------HHHHHHCCC
Confidence            44555555555 55555555555555555544  444455                               555555555


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++..
T Consensus       248 ~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            5666666666777888899999999999999999999999999999999999999999999999999999999998864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.6e-21  Score=155.28  Aligned_cols=109  Identities=36%  Similarity=0.469  Sum_probs=86.8

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHc
Q 013471          189 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR  268 (442)
Q Consensus       189 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~  268 (442)
                      .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|                  
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g------------------   65 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG------------------   65 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT------------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC------------------
Confidence            45777888888888888888888888888888888888888888887777766666666554                  


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHH
Q 013471          269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL  328 (442)
Q Consensus       269 g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl  328 (442)
                                   ++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||-
T Consensus        66 -------------~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           66 -------------ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             -------------CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             -------------CCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence                         45566777889999999999999999999999999998888888874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=3.8e-20  Score=148.47  Aligned_cols=102  Identities=36%  Similarity=0.512  Sum_probs=95.2

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  236 (442)
                      .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCC
Q 013471          237 CGHDGVTSLLVKEGASLNVDDA  258 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~~  258 (442)
                      .++.+++++|+++|++++..+.
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~  106 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSW  106 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSC
T ss_pred             CCCHHHHHHHHHcCCCCCcCCc
Confidence            9999999999999888776543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=2.1e-18  Score=137.14  Aligned_cols=94  Identities=29%  Similarity=0.484  Sum_probs=85.7

Q ss_pred             ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471          153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  232 (442)
Q Consensus       153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~  232 (442)
                      .....+..|.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            33456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 013471          233 EAIKCGHDGVTSLL  246 (442)
Q Consensus       233 ~A~~~~~~~iv~~L  246 (442)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=4.3e-18  Score=135.37  Aligned_cols=87  Identities=39%  Similarity=0.612  Sum_probs=78.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Q 013471          257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  336 (442)
Q Consensus       257 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  336 (442)
                      ++.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            34577777777888888888888888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 013471          337 KNLIKLL  343 (442)
Q Consensus       337 ~~~v~~L  343 (442)
                      .+++++|
T Consensus       103 ~~~~~~L  109 (110)
T 2zgd_A          103 EDLAEIL  109 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=97.83  E-value=3.6e-05  Score=66.86  Aligned_cols=75  Identities=17%  Similarity=0.445  Sum_probs=71.5

Q ss_pred             hhhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           62 IDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        62 ~d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      -.++..+|..+..+|..+.+.+++.++++|++++++++.+++..+....++|++.++.+|+..+.+|++.+|.+.
T Consensus        50 ~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~  124 (198)
T 2ptm_A           50 RHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD  124 (198)
T ss_dssp             HHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEE
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEE
Confidence            467889999999999999999999999999999999999999999999999999999999999999999999973

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=97.76  E-value=3.4e-05  Score=67.34  Aligned_cols=76  Identities=24%  Similarity=0.461  Sum_probs=72.0

Q ss_pred             hhhhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           61 IIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        61 ~~d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      --.++..+|..+..+|..+.+.+++.++++|.+++++++.+++..+....++|++.++.+|+..+.+|++.+|.+.
T Consensus        50 e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~  125 (202)
T 3bpz_A           50 EDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS  125 (202)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEE
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEE
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999999973

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=97.71  E-value=7.5e-05  Score=65.61  Aligned_cols=73  Identities=26%  Similarity=0.589  Sum_probs=69.3

Q ss_pred             hhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        63 d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      .++..+|..+..+|..+++..+. ++++|++++++++..++..+....++|++.++.+|+....+|++.+|.+.
T Consensus        56 ~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~  128 (212)
T 3ukn_A           56 ELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSME  128 (212)
T ss_dssp             CTTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEE
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEE
Confidence            47889999999999999999987 89999999999999999999999999999999999999999999999873

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=97.39  E-value=0.00019  Score=59.58  Aligned_cols=74  Identities=24%  Similarity=0.385  Sum_probs=63.8

Q ss_pred             hhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        63 d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      +++..+|..+..++..+++..+++++++|++.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus         7 ~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~   80 (160)
T 4f8a_A            7 KVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLE   80 (160)
T ss_dssp             --------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEE
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999974

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=95.95  E-value=0.0065  Score=48.86  Aligned_cols=69  Identities=20%  Similarity=0.202  Sum_probs=59.6

Q ss_pred             CcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           68 LPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        68 ~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      +|.....+.....+..++.++++|++.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus         8 ~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~   76 (139)
T 3ocp_A            8 LPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE   76 (139)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEE
T ss_pred             CCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEE
Confidence            333333345566778888999999999999999999999999999999999999999999999999874

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=95.64  E-value=0.0055  Score=54.05  Aligned_cols=51  Identities=14%  Similarity=0.217  Sum_probs=43.5

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhhhhhhhhhhcCcHHHHH
Q 013471            9 LPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY   74 (442)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~~~~~d~~~~~p~~~~~   74 (442)
                      ....|.++|.+++++|.+|++++|+++.          +    .++|+++ +++|+++.+|.....
T Consensus        37 ~~~~l~~~d~~~~~iF~~e~~lr~~~~~----------~----~~~y~~~-~iiDllailP~~~~~   87 (223)
T 1orq_C           37 YLVRLYLVDLILVIILWADYAYRAYKSG----------D----PAGYVKK-TLYEIPALVPAGLLA   87 (223)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHTTS----------C----HHHHHHH-HHHHCTTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccc----------c----HHHHHHH-hHHHHHHHHHHHHHH
Confidence            3455899999999999999999999962          1    4799998 999999999997654

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=95.45  E-value=0.02  Score=45.69  Aligned_cols=54  Identities=20%  Similarity=0.477  Sum_probs=50.6

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      .++.++++|.+.+++.+.++...+....+++++.++.+++....+|++.+|.+.
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~   59 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE   59 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCE
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEE
Confidence            457889999999999999999999999999999999999999999999999874

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=95.28  E-value=0.025  Score=45.10  Aligned_cols=55  Identities=24%  Similarity=0.414  Sum_probs=51.3

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus        10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~   64 (138)
T 1vp6_A           10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVS   64 (138)
T ss_dssp             HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEE
T ss_pred             HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEE
Confidence            4567899999999999999999999999999999999999999999999999973

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=94.94  E-value=0.041  Score=44.93  Aligned_cols=59  Identities=24%  Similarity=0.352  Sum_probs=53.8

Q ss_pred             HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ...+..++.++++|.+.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus        33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~   91 (154)
T 3pna_A           33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD   91 (154)
T ss_dssp             HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEE
T ss_pred             HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEE
Confidence            34456678899999999999999999999999999999999999999999999999974

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=94.93  E-value=0.022  Score=45.56  Aligned_cols=54  Identities=20%  Similarity=0.351  Sum_probs=50.8

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..++.++++|++.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v   58 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGV   58 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEE
Confidence            356789999999999999999999999999999999999999999999999987

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=94.91  E-value=0.042  Score=44.29  Aligned_cols=54  Identities=20%  Similarity=0.364  Sum_probs=51.2

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v   57 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKV   57 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCE
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEE
Confidence            457789999999999999999999999999999999999999999999999997

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=94.70  E-value=0.038  Score=45.50  Aligned_cols=60  Identities=22%  Similarity=0.399  Sum_probs=54.8

Q ss_pred             HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ....+..++.++++|++.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus        32 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~   91 (161)
T 3idb_B           32 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD   91 (161)
T ss_dssp             HHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEE
T ss_pred             HHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEE
Confidence            345566788999999999999999999999999999999999999999999999999873

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=94.61  E-value=0.051  Score=44.07  Aligned_cols=54  Identities=15%  Similarity=0.306  Sum_probs=50.8

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..+++++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus        11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v   64 (154)
T 2z69_A           11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCV   64 (154)
T ss_dssp             HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred             HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEE
Confidence            356789999999999999999999999999999999999999999999999987

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=94.52  E-value=0.028  Score=51.70  Aligned_cols=69  Identities=17%  Similarity=0.124  Sum_probs=60.9

Q ss_pred             CcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           68 LPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        68 ~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      +|.....+.........++++++|++.+++.+.+++..+....+++++.++.+|+..+.+|++.+|.+.
T Consensus        24 ~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~   92 (299)
T 3shr_A           24 FRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE   92 (299)
T ss_dssp             CCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEE
T ss_pred             CCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEE
Confidence            444444456677788889999999999999999999999999999999999999999999999999874

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=94.23  E-value=0.068  Score=45.33  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=53.6

Q ss_pred             HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ......+++++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus        34 ~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v   91 (187)
T 3gyd_A           34 FEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV   91 (187)
T ss_dssp             HHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred             HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence            4445678899999999999999999999999999999999999999999999999987

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=93.23  E-value=0.091  Score=45.41  Aligned_cols=50  Identities=24%  Similarity=0.461  Sum_probs=46.6

Q ss_pred             hcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           86 EKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        86 ~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         2 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v   51 (216)
T 4ev0_A            2 KGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKV   51 (216)
T ss_dssp             --CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCE
T ss_pred             CCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEE
Confidence            57899999999999999999999999999999999999999999999987

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=93.14  E-value=0.11  Score=45.86  Aligned_cols=55  Identities=24%  Similarity=0.305  Sum_probs=51.5

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ...++++++|++.+++.+.++...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus         6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~   60 (246)
T 3of1_A            6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVD   60 (246)
T ss_dssp             HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEE
T ss_pred             HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEE
Confidence            4567899999999999999999999999999999999999999999999999873

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=93.03  E-value=0.072  Score=42.19  Aligned_cols=55  Identities=16%  Similarity=0.398  Sum_probs=50.4

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhccccccc-CcceeeecCcccceeEEEeecccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFL-PGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~-p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ..++.++++|.+.+++.+..+...+....++ +++.++.+++....+|++.+|.+.
T Consensus        15 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~   70 (134)
T 2d93_A           15 LEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVE   70 (134)
T ss_dssp             HHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEE
T ss_pred             HHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEE
Confidence            3456789999999999999999999999999 999999999999999999999873

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=92.85  E-value=0.12  Score=45.01  Aligned_cols=55  Identities=15%  Similarity=0.294  Sum_probs=51.2

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus         8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~   62 (227)
T 3dkw_A            8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVK   62 (227)
T ss_dssp             HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEE
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEE
Confidence            3567899999999999999999999999999999999999999999999999873

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=92.81  E-value=0.1  Score=45.26  Aligned_cols=53  Identities=15%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      .+++++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v   55 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQL   55 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCE
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceE
Confidence            45788999999999999999999999999999999999999999999999987

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=92.69  E-value=0.13  Score=48.05  Aligned_cols=55  Identities=18%  Similarity=0.378  Sum_probs=51.4

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ..+++++++|++.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus        12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~   66 (333)
T 4ava_A           12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAE   66 (333)
T ss_dssp             HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEE
T ss_pred             HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEE
Confidence            3567899999999999999999999999999999999999999999999999973

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=92.47  E-value=0.12  Score=43.93  Aligned_cols=55  Identities=18%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             hhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        81 ~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +..+++.+++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v   59 (194)
T 3dn7_A            5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCL   59 (194)
T ss_dssp             CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeE
Confidence            4567788999999999999999999999999999999999999999999999987

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=92.32  E-value=0.11  Score=45.49  Aligned_cols=53  Identities=25%  Similarity=0.421  Sum_probs=50.2

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      .++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         6 ~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v   58 (231)
T 3e97_A            6 DDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVV   58 (231)
T ss_dssp             HHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEE
T ss_pred             HHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEE
Confidence            46789999999999999999999999999999999999999999999999987

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=91.88  E-value=0.22  Score=43.66  Aligned_cols=55  Identities=27%  Similarity=0.424  Sum_probs=50.8

Q ss_pred             hhhhhhcccCccCCCHHHHHHHHHh--cccccccCcceeeecCcccceeEEEeeccc
Q 013471           81 YMPYIEKVSLFKGCSSEFINQIVIR--VHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        81 ~~~~v~~~~lf~~~s~~~l~~lv~~--~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ....+.++++|.+.+++.+.++...  .....+++++.++.+|+....+|++.+|.+
T Consensus        16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v   72 (232)
T 1zyb_A           16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI   72 (232)
T ss_dssp             HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred             HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEE
Confidence            4456789999999999999999998  899999999999999999999999999987

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=91.35  E-value=0.13  Score=45.20  Aligned_cols=55  Identities=11%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             hhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        81 ~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ...++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v   63 (237)
T 3fx3_A            9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWV   63 (237)
T ss_dssp             HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEE
T ss_pred             HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEE
Confidence            3456789999999999999999999999999999999999999999999999987

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=91.32  E-value=0.19  Score=45.66  Aligned_cols=58  Identities=24%  Similarity=0.363  Sum_probs=52.9

Q ss_pred             HhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        79 ~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ......+.++++|.+.+++.+.++...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus        35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~   92 (291)
T 2qcs_B           35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD   92 (291)
T ss_dssp             HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEE
T ss_pred             HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEE
Confidence            3456677889999999999999999999999999999999999999999999999873

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=91.29  E-value=0.12  Score=45.14  Aligned_cols=54  Identities=19%  Similarity=0.415  Sum_probs=50.5

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v   58 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKV   58 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCE
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEE
Confidence            346789999999999999999999999999999999999999999999999987

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=91.02  E-value=0.19  Score=43.93  Aligned_cols=49  Identities=8%  Similarity=0.195  Sum_probs=47.1

Q ss_pred             cccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        87 ~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ++++|.+.+++.+..+........+++++.++.+|+..+.+|++.+|.+
T Consensus        14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v   62 (232)
T 2gau_A           14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKI   62 (232)
T ss_dssp             SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCE
T ss_pred             ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEE
Confidence            7889999999999999999999999999999999999999999999987

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=90.79  E-value=0.36  Score=42.39  Aligned_cols=58  Identities=16%  Similarity=0.415  Sum_probs=53.5

Q ss_pred             HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ...+..++.++++|...++..+..+...+....+++++.++.+|+....+|++.+|.+
T Consensus       120 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v  177 (246)
T 3of1_A          120 RLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAV  177 (246)
T ss_dssp             HHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEE
T ss_pred             HHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEE
Confidence            4556677789999999999999999999999999999999999999999999999987

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=90.42  E-value=0.24  Score=47.96  Aligned_cols=59  Identities=22%  Similarity=0.405  Sum_probs=54.5

Q ss_pred             HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ........+.++++|++.+++.+.+++..+....+++++.++.+|+....+|++.+|.+
T Consensus       139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v  197 (416)
T 3tnp_B          139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF  197 (416)
T ss_dssp             HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEE
T ss_pred             HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEE
Confidence            34556778899999999999999999999999999999999999999999999999987

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=90.34  E-value=0.25  Score=47.18  Aligned_cols=58  Identities=26%  Similarity=0.320  Sum_probs=53.6

Q ss_pred             HhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        79 ~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ......+.++++|++.+++.+..++..+....+++++.++.+|+....+|++.+|.+.
T Consensus       126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~  183 (381)
T 4din_B          126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVD  183 (381)
T ss_dssp             HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEE
T ss_pred             HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEE
Confidence            4456778899999999999999999999999999999999999999999999999873

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=90.33  E-value=0.27  Score=42.82  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=40.8

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ...++..++|.+.+++.+..+...+....+++++.++.+|+....+|++.+|.+
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v   63 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSV   63 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEE
Confidence            456788999999999999999999999999999999999999999999999987

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=88.60  E-value=0.11  Score=51.78  Aligned_cols=49  Identities=20%  Similarity=0.409  Sum_probs=41.6

Q ss_pred             CChhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhh-hhhhhhhhcCcHHHH
Q 013471           11 ENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDVI   73 (442)
Q Consensus        11 ~~~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~-~~~~d~~~~~p~~~~   73 (442)
                      ..|.++|.++.++|.+|++++|.++.     .         .++|+++ |+++|+++.+|..+.
T Consensus       239 ~~l~~ie~i~~~iFtiE~ilR~~~~~-----~---------k~~Y~ks~wniiDli~iip~~i~  288 (514)
T 2r9r_B          239 DPFFIVETLCIIWFSFEFLVRFFACP-----S---------KAGFFTNIMNIIDIVAIIPYYVT  288 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSS-----C---------SSSSTTSHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC-----c---------HHHHHhchhHHHHHHHHHHHHHH
Confidence            34899999999999999999999852     1         2489998 999999999998654

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=88.35  E-value=0.78  Score=41.49  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ...++..++.++++|...+...+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus       151 ~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v  209 (291)
T 2qcs_B          151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSA  209 (291)
T ss_dssp             HHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEE
Confidence            45566677889999999999999999999999999999999999999999999999987

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=87.95  E-value=0.88  Score=44.47  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             HHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        75 ~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +.........+.++++|.+.+++.+.++...+....+++++.++.+|+....+|++.+|.+
T Consensus        34 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v   94 (469)
T 1o7f_A           34 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL   94 (469)
T ss_dssp             HHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred             HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEE
Confidence            4445556677889999999999999999999999999999999999999999999999987

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=87.71  E-value=0.11  Score=49.20  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=0.9

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      .+.++++++|++.+++.+.++...++...++|++.+..+|+..+.+|++.+|.+
T Consensus       227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v  280 (355)
T 3beh_A          227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV  280 (355)
T ss_dssp             HC----------------------------------------------------
T ss_pred             chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEE
Confidence            346788999999999999999999999999999999999999999999999987

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=86.54  E-value=0.44  Score=43.42  Aligned_cols=59  Identities=24%  Similarity=0.505  Sum_probs=54.2

Q ss_pred             HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ....+..++.++++|...++..+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus       151 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v  209 (299)
T 3shr_A          151 KHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV  209 (299)
T ss_dssp             HHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEE
T ss_pred             HHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEE
Confidence            34566778889999999999999999999999999999999999999999999999987

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=84.78  E-value=0.97  Score=42.99  Aligned_cols=59  Identities=22%  Similarity=0.340  Sum_probs=54.3

Q ss_pred             HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ...++..++.++++|...+...+..+...+....+.+++.++.+|+....+|++.+|.+
T Consensus       242 ~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v  300 (381)
T 4din_B          242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTA  300 (381)
T ss_dssp             HHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCE
T ss_pred             HHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEE
Confidence            45566778889999999999999999999999999999999999999999999999987

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=84.35  E-value=0.17  Score=43.87  Aligned_cols=54  Identities=11%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      .++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus         4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~   57 (220)
T 2fmy_A            4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVR   57 (220)
T ss_dssp             TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEE
T ss_pred             hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEE
Confidence            456788999999999999999999999999999999999999999999999873

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=83.44  E-value=0.99  Score=43.54  Aligned_cols=58  Identities=22%  Similarity=0.441  Sum_probs=53.6

Q ss_pred             HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..++..++.++++|...+...+..+...+....+.+++.++.+|+....+|++.+|.+
T Consensus       262 ~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v  319 (416)
T 3tnp_B          262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEV  319 (416)
T ss_dssp             SSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred             HHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEE
Confidence            4456678889999999999999999999999999999999999999999999999987

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=83.02  E-value=0.14  Score=44.46  Aligned_cols=52  Identities=10%  Similarity=0.077  Sum_probs=48.0

Q ss_pred             hhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        85 v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      +.++++|.+.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus         2 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~   53 (222)
T 1ft9_A            2 PPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLR   53 (222)
T ss_dssp             CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEE
T ss_pred             cccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEE
Confidence            5678999999999999999999999999999999999999999999999873

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=81.14  E-value=1.2  Score=37.95  Aligned_cols=47  Identities=17%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             cCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           89 SLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        89 ~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      .+++..+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v   48 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSV   48 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEE
Confidence            46788999999999999999999999999999999999999999987

>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=80.43  E-value=1.4  Score=33.54  Aligned_cols=48  Identities=13%  Similarity=0.345  Sum_probs=40.9

Q ss_pred             cCcHHHHHHHHhhhcCCCC--CCcccccCCceeeEeeeeecCCeEEEeecC
Q 013471          393 PHNIEELIKLAVDKLDFPD--GHSILSEDGGKILDVDMINDGQKLYLISET  441 (442)
Q Consensus       393 p~~~~~ll~~~~~k~~~~~--~~~~~~~~~~~i~~i~~ird~d~~~~~~~~  441 (442)
                      ..+++.+|+...++.+.+.  -.++.+.+|.+|.+++=+.||| .|+..+.
T Consensus        39 ~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~-~YVa~g~   88 (108)
T 2dnf_A           39 LNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQ-FYVAVGR   88 (108)
T ss_dssp             HTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSC-BEEEECS
T ss_pred             ccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCC-EEEEeCC
Confidence            3799999999999998864  4788999999999999999998 7776653

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=80.28  E-value=2  Score=41.83  Aligned_cols=55  Identities=15%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccc-cccCcceeeecCcccceeEEEeecccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEE-FFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e-~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ...+..+++|.+.++..+..+...+..+ .+++++.++.+|+....+|++.+|.+.
T Consensus       336 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~  391 (469)
T 1o7f_A          336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN  391 (469)
T ss_dssp             HHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEE
T ss_pred             HHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEE
Confidence            4567889999999999999999999754 899999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-25
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-16
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	1e-06
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	1e-06
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	1e-06
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	4e-06
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	2e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	5e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	2e-04
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	4e-04
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 3e-33
 Identities = 54/254 (21%), Positives = 86/254 (33%), Gaps = 36/254 (14%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           A++ G L  +K L++ GA PN ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLN--------------------------------- 254
            TPL  A + GH  +  LL++  A+ N                                 
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 255 -VDDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312
            +   G   L  A   G     + +L     P++   +  TPLHVA       + KLLL 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 313 AGASVFTKDRWGNTPLDEGRMCGNK-NLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCT 371
            G S  +    G TPL              LL+             +   +         
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 246

Query: 372 VFPFHPWDEKVHRR 385
           V          +  
Sbjct: 247 VALLLSKQANGNLG 260

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 3e-26
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 170 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 229
               +   + L++ G   N     G +PLHLA   G+ ++   L+ K  + N+ +K G T
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 230 PLLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           PL    + GH  V  +L+K G  ++       + L  A   G+   +K +L +  D +++
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
                +PLH AA +G   +  LLL+ GAS       G TPL   +  G  ++  +L+
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 1e-23
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA +G +   + L+   A PN    +G +PLH+A      DI   L+ +G   +     G
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A K     V   L++ G S N +       L  A   G ++ +  +LS   + +
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 258

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342
             +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K 
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 315

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 9e-23
 Identities = 49/187 (26%), Positives = 72/187 (38%), Gaps = 35/187 (18%)

Query: 197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 256
           PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V   L++  A +N  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 257 DAGSF--LCTAVARGDSDFLKRVLSNGVDP------------------------------ 284
                  L  A   G ++ +K +L N  +P                              
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 285 ---SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 341
              +       TPLHVAA  G   +A+LLLE  A      + G TPL       N +++K
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 342 LLEDAEC 348
           LL     
Sbjct: 183 LLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 4e-20
 Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 2/228 (0%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   K G
Sbjct: 106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 165

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A+   +  +  LL+  G S +      +  L  A  +   +  + +L  G   +
Sbjct: 166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 225

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           +      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +L  
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 346 AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVP 393
                 +        +    H     +  F    +        + + P
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 333

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 3e-17
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 262 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 321
           L  A   G    +K +L  G  P+  +    TPLH+AA  G   +AK LL+  A V  K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 322 RWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEK 381
           +   TPL      G+ N++KLL +               +                  E 
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 382 V------HRRHGIVLWVPHNIEELIKLAVDK 406
                       + +   +    + +L +++
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLER 154

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 2e-15
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 170 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 229
           ++G++  +K L++  AD N     G SPLH A  +G+ DI   L++ G   N     G T
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 365

Query: 230 PLLEAIKCGHDGVTSLL---VKEGASLNVDD 257
           PL  A + G+  VT +L     E + + V D
Sbjct: 366 PLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 2e-14
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 34/162 (20%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
            A  G +     LI+ G   + T   G +PLH+A+  G   +  FL+Q   D+N K K G
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
            +PL +A + GH  + +LL                               L NG  P+  
Sbjct: 331 YSPLHQAAQQGHTDIVTLL-------------------------------LKNGASPNEV 359

Query: 288 DYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNT 326
             D  TPL +A   G   +  +L    +  + V   D+   +
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 19/51 (37%), Positives = 25/51 (49%)

Query: 293 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           TPLHVA+  G   + K LL+ GAS    +    TPL      G+  + K L
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 52

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 9e-25
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 37/217 (17%)

Query: 163 LRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYED------------- 208
           L V + AY G L +LK  I A  +   +TD D R+ LH A S G+ +             
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 209 --------------------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 248
                               I   L+ KG  +N  ++ G TPL  A       +  +L++
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 249 EGASLNVDDA--GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 306
            GA+ +  D    + +  A A+G+   +  +L      + +D +  TPLH+A  E     
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 307 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           AKLL+  GAS++ +++   TPL   +  G   ++K +
Sbjct: 185 AKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 7e-22
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
           L+  GA  N  + +G +PLH A S+   +I + L++ G + + KD +  T +  A   G+
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

Query: 240 DGVTSLLVKEGASLNVDDA--GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 297
             +  +L+   AS N+ D    + L  A      +  K ++S G      + + +TPL V
Sbjct: 149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

Query: 298 AASEGLYLMAKLLLE 312
           A   GL L+ K ++E
Sbjct: 209 AK-GGLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 5e-21
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 187 PNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAI----KCGHDG 241
             +    G + L  A  +G+ ++   L+ + G D+N  D  G   L+ A+        + 
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 242 VTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVA 298
           +T LL+  GA +NV        L  AV +     ++R+L    ++ +  D D +T L +A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 299 ASEGLYLMAKLLLEAGASVFTKD 321
               L  +A+LL + GAS    D
Sbjct: 261 VELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 3e-19
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 178 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIK 236
             L+  GAD N     G++PL LA  + +  +   L+ Q+ ++IN  D  G T LL A++
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 237 CGHDGVTSLLVKEGASLNVDD 257
                +  LL K GAS +  D
Sbjct: 263 LKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 7e-19
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 18/194 (9%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD--- 224
           AA  G +  LK  +  GAD N+ D+ G +    A   G      FL ++G ++N++    
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138

Query: 225 -------KFGNTPLLEAIKCGHDGVTSLLVKE-GASLN-VDDAGSFLCTAVARGDSDFL- 274
                  K G T L++A + GH  V  +L+ E GA +N  D+ G            D   
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 275 ----KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLD 329
                 +L +G D + R    +TPL +A  +    + + LLE     +   D  G T L 
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 330 EGRMCGNKNLIKLL 343
                  K + +LL
Sbjct: 259 LAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 8e-16
 Identities = 52/227 (22%), Positives = 81/227 (35%), Gaps = 51/227 (22%)

Query: 168 AAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           A  + D+  ++ L+  GA+ N + +  G +PLH A     EDI   L++ G D  ++ K 
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDP 284
           G TP L A   G   +  L + +GA +N  D    +    A   G    LK +   G + 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 285 SSRDYDH----------RTPLHVAASEGLYLMAKLLL----------------------- 311
           + R               T L  AA +G   + K+LL                       
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 312 ---------------EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                          + GA V  +   G TPL       +  L++ L
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 3e-12
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGA 251
           +    L  A      D+   L++ G ++N ++ + G TPL  A++   + +  LL++ GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 252 SLNVDDAGSFLCT--AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309
              +           A   G    LK  LS G D +  D+   T    AA  G     K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 310 LLEAGASVFTKDRW----------GNTPLDEGRMCGNKNLIKLL 343
           L + GA+V  + +           G T L +    G+  ++K+L
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.9 bits (211), Expect = 3e-19
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 26/186 (13%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIK 223
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 224 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGAS-LNVDDAGSFLCTAVARGD 270
           D    T L              A K   D +   +VK+    +               G+
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 271 SDF-------LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW 323
                     LK +++N ++  ++D +  T L++AA  G   +   LL+ GA  F  ++ 
Sbjct: 234 RKDSILENLDLKWIIANMLN--AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS 291

Query: 324 GNTPLD 329
           G  P+D
Sbjct: 292 GLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (183), Expect = 1e-15
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 24/201 (11%)

Query: 167 SAAYHGDLYQLK-GLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
             ++   L ++         + N   D  G +PLH  TS    ++   L++ G +    D
Sbjct: 78  HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 137

Query: 225 KFGNTPLLEAI-------KCGHDGVTSLLVKEGASLN----------VDDAGSFLCTAVA 267
             G + L++A+           + +   L       +          +  +G   C+A A
Sbjct: 138 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 197

Query: 268 RGDSDFLKRVL--SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL---EAGASVFTKDR 322
           +   D L   +         S   +  +  +    E    + + L         +  +D 
Sbjct: 198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 257

Query: 323 WGNTPLDEGRMCGNKNLIKLL 343
            G+T L+     GN +++  L
Sbjct: 258 NGDTCLNIAARLGNISIVDAL 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 4e-12
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 138 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIR-AGADPNKTDYDGRS 196
           +  +     K +     G +E E      +      + +   L        N  D +G +
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 235
            L++A   G   I   L+  G D  I +K G  P+    
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 7e-11
 Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 34/151 (22%)

Query: 152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITL 211
            H     + +     +A Y+ D+     + +          +  S  +       + I  
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 212 FLIQK---GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 268
            L  K      +N +D  G+T L  A + G+  +   L                      
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL---------------------- 278

Query: 269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
                    L  G DP   +     P+   A
Sbjct: 279 ---------LDYGADPFIANKSGLRPVDFGA 300

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 79.9 bits (196), Expect = 4e-17
 Identities = 36/235 (15%), Positives = 62/235 (26%), Gaps = 30/235 (12%)

Query: 135 LGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLK---GLIRAGADPNKTD 191
                N   KQL SD   H    ++E+   V  AA  G    L     L+ +        
Sbjct: 68  YYAHYNRNAKQLWSDA--HKKGIKSEVICFV--AAITGCSSALDTLCLLLTSDEIVKVIQ 123

Query: 192 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK--FGNTPLLEAIKCGHDGVTSLLVKE 249
            +      LA   G+  +   L +      +             A + GH  V + L + 
Sbjct: 124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183

Query: 250 GASLNVDDAGS-----FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 304
             +       +     F   AV RG  + +  +L   V  +  +           +  + 
Sbjct: 184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIA 243

Query: 305 LMAKLLLE----------------AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
                L E                   S   +  +    L         + I+ L
Sbjct: 244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.6 bits (177), Expect = 1e-14
 Identities = 24/202 (11%), Positives = 49/202 (24%), Gaps = 19/202 (9%)

Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLL 246
           N  +Y+    L L     +E++    I      +          +        + V  LL
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 247 VKEGASLNVDDA-------------GSFLCTAVARGDSDFLKRV---LSNGVDPSSRDYD 290
               A  N +                     A   G S  L  +   L++         +
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 291 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDR--WGNTPLDEGRMCGNKNLIKLLEDAEC 348
           +     +AA  G   +   L E   +                    G+ +++  L +   
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 349 TQLSEFHYCSQGMIDKMHPRKC 370
           T+ +           +      
Sbjct: 186 TEATAMIQAENYYAFRWAAVGR 207

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 70.3 bits (171), Expect = 7e-14
 Identities = 33/204 (16%), Positives = 52/204 (25%), Gaps = 28/204 (13%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDIN---I 222
           AA +G L+ L  L              +      LA   G+  +   L +         I
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAV-------ARGDSDF 273
           + +        A+  GH  V + L+     L   +     +    V            + 
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 274 ---LKRVLSNGV------DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-----SVFT 319
               K    +GV          + +     L     E L    + LL            T
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 320 KDRWGNTPLDEGRMCGNKNLIKLL 343
                N  L      GN+    LL
Sbjct: 313 IPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 6e-09
 Identities = 25/174 (14%), Positives = 45/174 (25%), Gaps = 34/174 (19%)

Query: 169 AYHGDLYQLKGLIRAGADPN---KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
           A +G L+ L  L               +  +    A  RG+ ++  FL+   V +   + 
Sbjct: 169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI 228

Query: 226 F----------------------GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 263
                                   +     +   G   +    V +   L        L 
Sbjct: 229 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL----VTKSECLQGFYMLRNLI 284

Query: 264 TAVARGDSDFLKRVLSNGVDP-----SSRDYDHRTPLHVAASEGLYLMAKLLLE 312
                   D ++ +LS          ++   D    L +A   G      LLL 
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 17/176 (9%)

Query: 81  YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQL----YFVCHGVLG 136
              ++  ++     +      ++   +   F    V     NV++ L      + +  + 
Sbjct: 170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 229

Query: 137 KESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRS 196
           +                    E   A ++++     DL                 +    
Sbjct: 230 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL--------VTKSECLQGFYMLR 281

Query: 197 PLHLATSRGYEDITLFLIQKG-----VDINIKDKFGNTPLLEAIKCGHDGVTSLLV 247
            L         D   FL+                  N  L  A++ G+ G  +LL+
Sbjct: 282 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 5/53 (9%)

Query: 168 AAYHGDLYQLKGLIRAGADP-----NKTDYDGRSPLHLATSRGYEDITLFLIQ 215
                 L  ++ L+                D    L LA   G +     L+ 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (190), Expect = 8e-17
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 53/232 (22%)

Query: 168 AAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224
           A  H     L  L+   A     +  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 225 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT----------------AVAR 268
           + G+T L  A +        +L++   S   D + ++L                  +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 269 GDSDFLKRVLSNGVDPSSRDYD----------------------------------HRTP 294
            +++   R     +   + +YD                                   RTP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 295 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
           LH+A       + +LLL+AGA    +   G TPL    +  N  L +LL   
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.0 bits (162), Expect = 4e-13
 Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 19/198 (9%)

Query: 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVTS 244
                DG + LHLA    +E    FL+        +++++  G T L  A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 245 LLVKEGASLNVDDAGSFLCTAVA--RGDSDFLKRVLSNGVDPS--------------SRD 288
            L   GA + V + G      +A           +L                     + D
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 348
             H      +             +    +  ++  G+TPL    +  +  +++LL DA  
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 349 TQLSEFHYCSQGMIDKMH 366
                   C +  +    
Sbjct: 183 DLNKPEPTCGRTPLHLAV 200

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSP--------------LHLATSRGYEDITLFL 213
           A           L++      +   D                     +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 214 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG---SFLCTAVARGD 270
               + +  ++  G+TPL  A+      +  LL   GA LN  +     + L  AV    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315
           +  L+ +L  G DP++R Y  RTPL  A      ++A+LL   GA
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 20/65 (30%), Positives = 28/65 (43%)

Query: 192 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 251
             GR+PLHLA       +   L++ G D   +   G TPL  A+   +  +  LL   GA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 252 SLNVD 256
               D
Sbjct: 250 PEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 22/183 (12%), Positives = 50/183 (27%), Gaps = 7/183 (3%)

Query: 220 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-----SFLCTAVARGDSDFL 274
                + G+T L  A+   H+     L+   A     D       + L  A   G++  +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 275 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 334
           +++ + G      +    T LH+A     +  A +LL+   S             +    
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 335 GNKNLIKLLEDAECTQLSEFHYCSQG--MIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWV 392
              +    ++     +  E          ++  +    T        +       +    
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 393 PHN 395
              
Sbjct: 182 ADL 184

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.8 bits (182), Expect = 4e-16
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 37/205 (18%)

Query: 177 LKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 235
           +  L+  GA+ N   D  G + LHLA      D    L+  G D N +D  G TPL  A+
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 236 KCGHDGVTSL----------------------------------LVKEGASLNVDDAG-- 259
                GV  +                                  L+   A +N  D    
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 260 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 319
           + L  A A  +++ +  +L +  +  ++D    TPL +AA EG Y  +K LL+  A+   
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 184

Query: 320 KDRWGNTPLDEGRMCGNKNLIKLLE 344
            D     P D      + ++++LL+
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.0 bits (128), Expect = 5e-09
 Identities = 16/77 (20%), Positives = 28/77 (36%)

Query: 170 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 229
              +   +  L+   A+ +  D    +PL LA   G  + +  L+    +  I D     
Sbjct: 132 AVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRL 191

Query: 230 PLLEAIKCGHDGVTSLL 246
           P   A +  H  +  LL
Sbjct: 192 PRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 306 MAKLLLEAGASV-FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDK 364
           +   LL  GA +  T D+ G T L         +  K L DA     S+ +     +   
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 365 MHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 395
           +      VF     +   +    +       
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPL 94

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 274 LKRVLSNGVDPSSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 332
           +  +L+ G + ++  D    T LH+AA       AK LL+AGA   ++D  G TPL    
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 333 MCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD 379
                 + ++L     T L+   +     +                 
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 111

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.7 bits (174), Expect = 1e-14
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 243
           G++ +K D DG++P+ LA   G  ++ ++LIQ+G  +   D   +T    A    H  + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 244 SLLVK 248
            +  +
Sbjct: 271 DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
            G +   +D D +TP+ +AA EG   +   L++ GASV   D   +T     +   + N+
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 269

Query: 340 IKLLE 344
           + + +
Sbjct: 270 VDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 26/204 (12%)

Query: 196 SPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 254
           SP+ L T + G   IT  + ++ V+I    +   T L           +  L+   A   
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA--- 57

Query: 255 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 314
                               K  ++ G D ++ D D  TPL +A       +   L++AG
Sbjct: 58  --------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 97

Query: 315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMH-PRKCTVF 373
           A     ++   + L +     +  ++  + ++   +         GM   M         
Sbjct: 98  ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 157

Query: 374 PFHPWDEKVHRRHGIVLWVPHNIE 397
                   V +   +        +
Sbjct: 158 QVASAKLLVEKGAKVDYDGAARKD 181

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 32/134 (23%)

Query: 181 IRAGADPNKTDYDGRSPLHLATSRGYED-ITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239
               A  +   Y GR+ LH A        +   + +KG + + +D+ G TP++ A + G 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299
             V   L                               +  G    + D    T   +A 
Sbjct: 234 IEVVMYL-------------------------------IQQGASVEAVDATDHTARQLAQ 262

Query: 300 SEGLYLMAKLLLEA 313
           +   + +  +    
Sbjct: 263 ANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ 215
           AA  G +  +  LI+ GA     D    +   LA +  + +I     +
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 38/234 (16%), Positives = 61/234 (26%), Gaps = 59/234 (25%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVD 219
               G     + + R   +        R+ LH   S    + +  L        I  G D
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 220 INIKDKFGNTPLLEAI---------------------------------KCGHDGVTSLL 246
           +N  D   NTPL+ A+                                      G+   +
Sbjct: 67  VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

Query: 247 VKEG----------------ASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD 290
           +                     +   + G     +         K          S  Y 
Sbjct: 127 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186

Query: 291 HRTPLHVAASEGLYLMAK-LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
            RT LH AA      + K L+ E G++   +D  G TP+      G   ++  L
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 5e-14
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 44/218 (20%)

Query: 168 AAYHGDLYQLKGLI----RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 223
           A   G+L  +  L+    + G + +  +   ++PLHLA       +   L+  G      
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 69

Query: 224 DKFGNTPLLEAIKCGHDGVTSLLVKEGA-------------------------------- 251
           D+ G T    A +         L+   A                                
Sbjct: 70  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

Query: 252 --------SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 303
                   ++++    S L  AV       ++ +L +G + +++ Y   + LH A+  GL
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 341
             + + L+ +GA    K+   +TPL   R     ++++
Sbjct: 190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 193 DGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGH 239
           DG +PLH+A  +G       L+    Q G +++I +    TPL  A+    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 4/106 (3%)

Query: 290 DHRTPLHVAASEGLYLMAKLLL----EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           D  TPLH+A  +G       L+    + G  +   +    TPL    +    ++++LL  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 346 AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLW 391
           A  + ++   +           R  T                    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 107

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 27/177 (15%)

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G+TPL  A+  G+      L                           +      G +   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRL---------------------------VNLFQQGGRELDI 35

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
            +   +TPLH+A    L  + +LL+ AGAS    DR G T         +   ++ L D+
Sbjct: 36  YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

Query: 347 ECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLA 403
                 +    +   +  +H    T                  + +      LI   
Sbjct: 96  AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 152

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.7 bits (161), Expect = 6e-13
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 31/159 (19%)

Query: 152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITL 211
             + +   ++                + L     +  +    G + LH+A ++GY ++  
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 212 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271
            LIQ   D+NIKD  G TPL  A   G +    +L                         
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL------------------------- 251

Query: 272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310
                 + N  D  + +   +T   VA  + L  + +L 
Sbjct: 252 ------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.2 bits (152), Expect = 9e-12
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 35/161 (21%)

Query: 187 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 246
            N+   D  +           D   +L    ++     K G T L  A   G+  V  LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 247 VKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 306
           ++    +N+                               +DYD  TPLH AA  G    
Sbjct: 219 IQARYDVNI-------------------------------KDYDGWTPLHAAAHWGKEEA 247

Query: 307 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347
            ++L+E    +   ++ G T  D      +++++  LE+ +
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFD----VADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 29/211 (13%)

Query: 167 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           +A   GD  ++  L+  GAD N  + DG + LH A      D+  FL++ G +IN  D  
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------------------- 257
           G  PL  A  CG+  +   L+ +GA +   +                             
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165

Query: 258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317
             +           D  + + S  ++         T LHVAA++G   + KLL++A   V
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 348
             KD  G TPL      G +   ++L +  C
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.7 bits (130), Expect = 5e-09
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 189 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 242
           K  +D  +    A S G  +  L L+++G DIN  +  G T L +A    +  +
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 15/91 (16%), Positives = 28/91 (30%)

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347
            +D       A S G       LLE GA +   +  G T L +  +  N +++K L +  
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 348 CTQLSEFHYCSQGMIDKMHPRKCTVFPFHPW 378
                  +     +          +  +   
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 6/164 (3%)

Query: 232 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH 291
           L+        +   +VK   +    D G+    A + GD++ + R+L  G D +  + D 
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 292 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351
            T LH A  +    M K L+E GA++   D  G  PL     CG  ++ + L        
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA--- 130

Query: 352 SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 395
              H  +                     +    R G+ +     
Sbjct: 131 ---HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 222
           AA+ G     + L+    D    +  G++   +A     EDI  +L +     N+
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 5/175 (2%)

Query: 223 KDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLS 279
           K KF      L A   G       L++ GA +N  +    + L  A    + D +K ++ 
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 339
           NG + +  D +   PLH AAS G   +A+ L+  GA V   +  G+TPLD       + L
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 340 IKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPH 394
           ++   + +   +       +     +   +  +   H  D +  +  G  L V  
Sbjct: 155 LQNEVNRQGVDI--EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (158), Expect = 6e-13
 Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 46/207 (22%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCGH--------- 239
           DG S LHLA     + +T+ +I+        +N ++    TPL  A+             
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 240 --------------------------------DGVTSLLVKEGASLNVDDAGSFLCTAVA 267
                                              T+  +         +  + L  A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 268 RGDSDFLKRVLSNGVDP-SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 326
            G    ++ ++S G D  +    + RT LH+A       +  LLL+ GA V      G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 327 PLDEGRMCGNKNLIKLLEDAECTQLSE 353
           P        +  + + L       L  
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 46/195 (23%)

Query: 168 AAYHGD----LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 223
           A  H +    +  ++ +    A  N  +   ++PLHLA      +I   L+  G D  ++
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 68

Query: 224 DKFG---------------------------------------NTPLLEAIKCGHDGVTS 244
           D  G                                       +T L  A   G+ G+  
Sbjct: 69  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128

Query: 245 LLVKEGAS---LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 301
           LLV  GA        +  + L  AV   + D +  +L  G D +   Y   +P  +    
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 188

Query: 302 GLYLMAKLLLEAGAS 316
               + + L +    
Sbjct: 189 PSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 4/118 (3%)

Query: 290 DHRTPLHVAASEG----LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           D  + LH+A           + + +    A +  ++    TPL    +     + + L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 346 AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLA 403
           A C         +  +                        H I+    +N    + LA
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 118

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 21/56 (37%)

Query: 170 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
              +   +  L++ GAD N+  Y G SP  L   R    I   L Q  ++      
Sbjct: 154 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 28/169 (16%)

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 286
           G++ L  AI      +T  +++                           +V  +    + 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIR---------------------------QVKGDLAFLNF 34

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
           ++   +TPLH+A       +A+ LL AG     +D  GNTPL      G    + +L  +
Sbjct: 35  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 94

Query: 347 ECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 395
             T             +            +    ++    G  +     
Sbjct: 95  CTTP-HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 142

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 14/142 (9%)

Query: 193 DGRSPLHL---ATSRGYEDITLFLIQKGVDINIK------DKFGNTPLLEAIKCGHDG-- 241
           D  + LH    A         L     GVD+  K       +   T L  A++       
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 242 -VTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 298
            +   LV+   +L+       + L       +++ LK +L         +    TPL +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 299 ASEGLYLMAKLLLEAGASVFTK 320
                    +LL +A +  F  
Sbjct: 122 KRLKHEHCEELLTQALSGRFNS 143

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 21/209 (10%)

Query: 197 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  ++N+
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 256 DDAGSFLCTAV-------ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 308
           DD                   +            D +       T LH+A  +  + +++
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPR 368
            L+E GASV  KD++   PL      G+  LI                C  G        
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLI-------------ELLCGLGKSAVNWQD 169

Query: 369 KCTVFPFHPWDEKVHRRHGIVLWVPHNIE 397
           K    P      + H    ++L   +  E
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAE 198

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 168 AAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 226
           A    + ++++ L+ +  +   + D DGR PLH + S    +IT FL+ K  ++N+ D  
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-------SFLCTAVARGDSDFLKRVLS 279
            ++           G   ++          D         + L  AV +   +  + ++ 
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 280 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKN 338
           NG     +D  ++ PLH AAS G   + +LL   G ++V  +D+ G TPL      G+ +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 339 LIKLL 343
              LL
Sbjct: 187 AAVLL 191

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 33/137 (24%), Positives = 41/137 (29%), Gaps = 34/137 (24%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCG 238
           LI  GA     D   + PLH A S G   +   L   G   +N +DK G TPL  A+  G
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 239 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 298
           H     LLV                                 G +    D        VA
Sbjct: 184 HGDAAVLLV------------------------------EKYGAEYDLVDNKGAKAEDVA 213

Query: 299 ASEGLYLMAKLLLEAGA 315
            +E    + K  L    
Sbjct: 214 LNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 1/105 (0%)

Query: 293 TPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351
            PLH A  E  +   + LL +  + +  KD+ G  PL          +   L        
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 352 SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 396
            + +    G                        +  +       +
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 106

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 180 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 219
           + + GA+ +  D  G     +A +   E +  F +   VD
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 19/159 (11%), Positives = 36/159 (22%), Gaps = 30/159 (18%)

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 287
           N PL +A           L+                               S       +
Sbjct: 1   NYPLHQACMENEFFKVQELLH------------------------------SKPSLLLQK 30

Query: 288 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347
           D D R PLH + S   + +   LL    +V   D   ++      +  +   +++++   
Sbjct: 31  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 90

Query: 348 CTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRH 386
              L                       F      +    
Sbjct: 91  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 129

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 287 RDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343
           +D    TPL  A +EG    A LL+E  GA     D  G    D   +  N+ + K  
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFF 222

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (129), Expect = 1e-09
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK--EG 250
           D    L  A   G +D    L+  G      D  G +PL  A + GH   T +L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 251 ASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310
                    + L  A + G ++ ++ +L +G D +++D    T LH A       + +LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 344
           ++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  G   +++ L+  GA        G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDPS 285
            TPL  A   GH  +  +L+K GA +N  D    + L  A      + ++ ++  G D  
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLL 310
           ++    +T   ++   G   +A++L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 290 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349
           D    L  AA  G     ++L+  GA   T D  G +PL      G+ +  ++L  A  +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 350 QLSEFHYCSQGMIDKMHPRKCTVFPFHPW 378
           + +        +          +      
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLK 88

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 8e-09
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           + L  A +RG  +    L+Q  V++N ++ FG T L        +    LL++       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 256 DDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG-LYLMAKLLLEA 313
           D  G + +  A   G  D L+ +L    D +  D +   PLH+AA EG L ++  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 314 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346
            ++V  ++  G+T  D  R+ G   ++ L++  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 4/150 (2%)

Query: 168 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 227
           AA  GDL QL  L++   + N  +  GR+ L +      E     L+ +G + ++KD+ G
Sbjct: 8   AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIAR-RLLLRGANPDLKDRTG 66

Query: 228 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD---SDFLKRVLSNGVDP 284
              + +A + G       L++  A +N++D    L   +A  +         V     + 
Sbjct: 67  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 126

Query: 285 SSRDYDHRTPLHVAASEGLYLMAKLLLEAG 314
             R++   T   +A   G   +  L+   G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 16/103 (15%), Positives = 31/103 (30%)

Query: 293 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352
             L  AA+ G       LL+   +V  ++ +G T L   ++   +   +LL       L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 353 EFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 395
           +    +            T+     +   V+          H 
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL 105

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-08
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 167 SAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 225
            AA  GD+ +++ L+ R    P+  +  G++ L +            L Q          
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTS 67

Query: 226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 285
             +     A     D +  L+         D  G+       +     +   L+   D  
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127

Query: 286 SRDYDHRTPLHVAASEGLYLMAKLLLE 312
            RD    TPL +A   G   +  +L  
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-08
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 197 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-LN 254
            L  A +RG  +++   L ++ V  +  ++FG T L   +         LL +  +  + 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 255 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 314
                S +  A   G  D LK ++ +G D +  D     P+H+A  EG   +   L  A 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAE 123

Query: 315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345
           + +  +D  G TPL+     G ++L+ +L+ 
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 1/105 (0%)

Query: 293 TPLHVAASEG-LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351
             L  AA+ G +  + +LL          +R+G T L           ++LL+      +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 352 SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 396
            +    S            T+         V+   G      H  
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           +  V LF+      + +IV  +       G VI   G   D+++FV  G
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG 61

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G
Sbjct: 22  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG 70

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G
Sbjct: 18  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRG 66

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           +IE +   K        ++V  +  + +  GE I+ QG+  D  + V  G
Sbjct: 3   FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESG 52

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 10/50 (20%), Positives = 21/50 (42%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           ++ KVS+ +         +   +    F  G+ I+ QG   D+ + +  G
Sbjct: 3   FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEG 52

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 255
           + L  ++  G  D+   +I +  D ++ +  G T L  A+  GH  +   LV+ G ++N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 256 DDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHR---TPLHVAASEGLYLMAKLL 310
            D+  +     A   ++    K ++ +G    +  Y              EG    ++ L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 311 LEAGA 315
                
Sbjct: 123 YGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 229 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 288
             LL++   G   +   ++ E    ++ +         A                 +   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 289 YDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLD--EGRMCGNKNLIKLL 343
            D    TPLH AAS     + K L+E+GA+VF        T  D  E    G     + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 344 EDAE 347
              +
Sbjct: 123 YGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 9/53 (16%)

Query: 178 KGLIRAGADPN-KTDYDGRSPLHL--ATSRGYEDITLFLIQKGVDINIKDKFG 227
           K L+ +GA     T  D ++          GY   + FL        +++K G
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL------YGVQEKMG 130

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 80  LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           +    ++ V  F+      + QI +  + E    G  +  QG++    Y V  G
Sbjct: 21  IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAG 74

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 2e-04
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 197 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 256
            L  A +RG  +    L++ G + N  + +G  P+   +         LL+        D
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 257 DAGSFLCTAVARGDSDFLKR--VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA 313
            A        A  +        +   G     RD   R P+ +A   G   +A+ L  A
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 10/49 (20%), Positives = 24/49 (48%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG 133
           + +V LF+      ++ I  R+    F     ++ +G+ V+++ F+  G
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRG 56

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 85  IEKVSLFKGCSSEFINQIVIR-VHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135
           +  +      S+    ++    + E     G V+  QG      Y +  G +
Sbjct: 12  LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSV 63

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 10/67 (14%), Positives = 25/67 (37%)

Query: 97  EFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLGKESNLRLKQLKSDITFHIGK 156
           + +++++   H   +     I+  G+  + L+F+  G +         +       + G 
Sbjct: 3   KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGD 62

Query: 157 HEAELAL 163
              EL L
Sbjct: 63  FFGELGL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	97.97
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	97.35
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	96.87
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	96.79
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	96.78
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	96.62
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	96.47
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	96.16
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	95.67
d1zyba2	147	Probable transcription regulator BT4300, N-termina	95.6
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	88.03
d1f2ri_	100	Inhibitor of caspase-activated DNase (ICAD), DFF45	84.45
d1d4ba_	122	Cell death-inducing effector B (CIDE-B), N-termina	80.44
d1ibxa_	81	Caspase-activated DNase (CAD), DFF40, N-terminal d	80.09

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-37  Score=283.94  Aligned_cols=193  Identities=24%  Similarity=0.235  Sum_probs=177.0

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGAD---PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  233 (442)
                      -+..|.||||+||..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            456789999999999999999999999988   56788999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC-------------------------------------------------cCCCChHHHH
Q 013471          234 AIKCGHDGVTSLLVKEGASLN-------------------------------------------------VDDAGSFLCT  264 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~-------------------------------------------------~~~~~~~L~~  264 (442)
                      |+..++.+++++|++.+....                                                 ..++.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            999999999999976432111                                                 0135689999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471          265 AVARGDSDFLKRVLSNGVDPSSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       265 A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                      |+..++.+++++|++++++.+.. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999988864 67899999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCC
Q 013471          344 EDAECT  349 (442)
Q Consensus       344 l~~~a~  349 (442)
                      +++||+
T Consensus       245 l~~Ga~  250 (255)
T d1oy3d_         245 RAHGAP  250 (255)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            999995

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=265.75  Aligned_cols=202  Identities=26%  Similarity=0.359  Sum_probs=188.4

Q ss_pred             HHhhhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013471          143 LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI  222 (442)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  222 (442)
                      ++.+.......++..|..|.||||+|+..|+.+++++|++.+.+....+..+.++++.|+..|+.+++++|+++|++++.
T Consensus        19 v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~   98 (223)
T d1uoha_          19 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA   98 (223)
T ss_dssp             HHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEe
Confidence            33444445566778889999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 013471          223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS  300 (442)
Q Consensus       223 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~  300 (442)
                      +|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..++.+++++|.+.|.+++.+|.+|+||||+|+.
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~  178 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD  178 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccc
Confidence            99999999999999999999999999999988755  4589999999999999999999999999999999999999999


Q ss_pred             hChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          301 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       301 ~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      .|+.++|++|+++|++++.+|..|+||||+| ..|+.+++++|++
T Consensus       179 ~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         179 EERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999999999999999999999999998 4799999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=256.82  Aligned_cols=207  Identities=31%  Similarity=0.355  Sum_probs=190.1

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      .+.|+.+|..|+++.++.+++. +..++.+|..|+||||+||..|+.+++++|++.+.+....+..+.++++.|+..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            4678999999999999877754 577899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471          241 GVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  318 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~  318 (442)
                      +++++|+++|++++..+  +.||||+|+.+|+.+++++|+++|++++.++..|.||||+|+..++.+++++|.++|.+++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~  163 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN  163 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee
Confidence            99999999999988755  4699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          319 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       319 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      .+|..|+||||+|+..|+.+++++|+++|++..              .++..+.+|+|.|. +++
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~--------------~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIY--------------IENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCTTSCCHHHHCC-TTH
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCCCCCC--------------CCCCCCCCHHHHHH-CCC
Confidence            999999999999999999999999999998533              34456677888874 455

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=256.96  Aligned_cols=191  Identities=23%  Similarity=0.212  Sum_probs=172.2

Q ss_pred             hhHHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471          161 LALRVNSAAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       161 ~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  236 (442)
                      |.||||+|+..|+.    ++++++...|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||.|+.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999996    44556667899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCc--------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHH
Q 013471          237 CGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMA  307 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~--------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~iv  307 (442)
                      .++.++++.|++.+.....        .++.+||+.|+..++.+++++|++.|+.++.++ .+|+||||+|+..|+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence            9999999999998765443        235699999999999999999999999998765 6799999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471          308 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  351 (442)
Q Consensus       308 ~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~  351 (442)
                      ++|+++|+|++.+|..|+||||+|+..++.+++++|.+.+.+..
T Consensus       162 ~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~  205 (221)
T d1iknd_         162 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  205 (221)
T ss_dssp             HHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            99999999999999999999999999999999999999877543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.7e-33  Score=258.92  Aligned_cols=186  Identities=23%  Similarity=0.285  Sum_probs=167.9

Q ss_pred             hhhHHHHHHHhcCCHHHHHHH--------HHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471          160 ELALRVNSAAYHGDLYQLKGL--------IRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  231 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL  231 (442)
                      .|.||||+||..|+.++++.|        +++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            488999999999999999877        467999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCC-------------------------------------------------CCCcCCCChHH
Q 013471          232 LEAIKCGHDGVTSLLVKEGA-------------------------------------------------SLNVDDAGSFL  262 (442)
Q Consensus       232 ~~A~~~~~~~iv~~Ll~~g~-------------------------------------------------~~~~~~~~~~L  262 (442)
                      ++|+..++.++++++...+.                                                 +.....+.|+|
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99999999888887754310                                                 00112345789


Q ss_pred             HHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 013471          263 CTAVARGDSDFLKRVL-SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  341 (442)
Q Consensus       263 ~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~  341 (442)
                      |.++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+++|+.++|+
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999755 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 013471          342 LLED  345 (442)
Q Consensus       342 ~Ll~  345 (442)
                      +|++
T Consensus       272 lL~~  275 (277)
T d2fo1e1         272 IFDR  275 (277)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-32  Score=267.27  Aligned_cols=219  Identities=22%  Similarity=0.252  Sum_probs=173.0

Q ss_pred             ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHH--------------------
Q 013471          151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDIT--------------------  210 (442)
Q Consensus       151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v--------------------  210 (442)
                      +..++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++                    
T Consensus        23 g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~  102 (408)
T d1n11a_          23 GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP  102 (408)
T ss_dssp             TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccch
Confidence            455666777788889998888888899988888888888888888898888877766544                    


Q ss_pred             ----------------------------------------------HHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 013471          211 ----------------------------------------------LFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS  244 (442)
Q Consensus       211 ----------------------------------------------~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~  244 (442)
                                                                    ++|+++|++++..+..|.+|||+|+..|+.++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~  182 (408)
T d1n11a_         103 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK  182 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHH
Confidence                                                          4455556666777777888888888888888888


Q ss_pred             HHHHcCCCCCcC--------------------------------------------------------------------
Q 013471          245 LLVKEGASLNVD--------------------------------------------------------------------  256 (442)
Q Consensus       245 ~Ll~~g~~~~~~--------------------------------------------------------------------  256 (442)
                      +|+++|++++..                                                                    
T Consensus       183 ~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  262 (408)
T d1n11a_         183 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK  262 (408)
T ss_dssp             HHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             HHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccC
Confidence            888887765421                                                                    


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Q 013471          257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  336 (442)
Q Consensus       257 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  336 (442)
                      .+.+|++.|+..++.+++++|+++|++++..+..+.||||.|+..++.+++++++++|++++.+|.+|+||||+|+++|+
T Consensus       263 ~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~  342 (408)
T d1n11a_         263 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH  342 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCC
Confidence            11235566666677777777777777777777778888888888888888888888889999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          337 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       337 ~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      .++|++|+++||++.              ..+..+.+|+|.|...++
T Consensus       343 ~~iv~~Ll~~GAd~n--------------~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         343 TDIVTLLLKNGASPN--------------EVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHHHHHHHHTTCCSC--------------CCCSSSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCC--------------CCCCCCCCHHHHHHHcCC
Confidence            999999999999643              334567778999888877

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5e-32  Score=252.54  Aligned_cols=207  Identities=28%  Similarity=0.367  Sum_probs=186.8

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  239 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~  239 (442)
                      .+.|+|+.||..|+.++|++|+++|+++|.+|.+|.||||+|+..|+.+++++|+++|+++...+..+.+||+.|+..++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcC--CCChHHHHHHHcCCHHHHHHHHHC-C--------------------------CCCCCCCCC
Q 013471          240 DGVTSLLVKEGASLNVD--DAGSFLCTAVARGDSDFLKRVLSN-G--------------------------VDPSSRDYD  290 (442)
Q Consensus       240 ~~iv~~Ll~~g~~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~-g--------------------------~~~~~~~~~  290 (442)
                      .++++.|+++|+..+..  ++.+++++|+..++.+.++.++.. +                          .+....+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            99999999999887765  455899999999988888888753 2                          334567788


Q ss_pred             CCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcc
Q 013471          291 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKC  370 (442)
Q Consensus       291 g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~  370 (442)
                      |.||||.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|++..              ..+..
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~--------------~~d~~  264 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--------------AVNKV  264 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------CCCTT
T ss_pred             CCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------------CcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999643              23345


Q ss_pred             eecCCCCCCc
Q 013471          371 TVFPFHPWDE  380 (442)
Q Consensus       371 ~~~~~h~~~~  380 (442)
                      +.+|+|.|+.
T Consensus       265 G~TaL~~A~e  274 (291)
T d1s70b_         265 GQTAFDVADE  274 (291)
T ss_dssp             SCCTTTSCCS
T ss_pred             CCCHHHHHHH
Confidence            6679999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-31  Score=241.01  Aligned_cols=204  Identities=24%  Similarity=0.246  Sum_probs=182.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHcC
Q 013471          163 LRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN---IKDKFGNTPLLEAIKCG  238 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---~~~~~g~tpL~~A~~~~  238 (442)
                      +|||+||..|+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++   ..+..|.+|+|+|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            699999999999999999885 57899999999999999999999999999999999986   45678999999999999


Q ss_pred             CHHHHHHHHHcCCCCCcC----CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC
Q 013471          239 HDGVTSLLVKEGASLNVD----DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  314 (442)
Q Consensus       239 ~~~iv~~Ll~~g~~~~~~----~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g  314 (442)
                      ..++++.++..+...+..    ...++++.++..++.+++++|++.|.+.+.++..|+||||+|+..|+.+++++|+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            999999999988765542    3458999999999999999999999999999999999999999999999999999987


Q ss_pred             -CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccccccchhhcccCCCcceecCCCCCCc
Q 013471          315 -ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE  380 (442)
Q Consensus       315 -a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  380 (442)
                       .+++.+|..|+||||+|+.+|+.+++++|++ .|++...              .+..+.+|+|.|..
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~--------------~d~~g~t~l~~A~~  215 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--------------VDNKGAKAEDVALN  215 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--------------CCTTSCCTGGGCSC
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCC--------------cCCCCCCHHHHHhh
Confidence             6889999999999999999999999999996 5875332              23445678888753

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.7e-31  Score=247.72  Aligned_cols=193  Identities=27%  Similarity=0.295  Sum_probs=161.9

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCC----------------
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINI----------------  222 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~----------------  222 (442)
                      ++.|+||.|++.|+.++|++|+++|+++|.++ ..|.||||+|+..|+.+++++|++.+..+..                
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            46789999999999999999999999998765 4799999999999999999999988765311                


Q ss_pred             ------------------------------------------------------------CCCCCCcHHHHHHHcCCHHH
Q 013471          223 ------------------------------------------------------------KDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       223 ------------------------------------------------------------~~~~g~tpL~~A~~~~~~~i  242 (442)
                                                                                  .+..|.||||+|++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                        11336788888888888888


Q ss_pred             HHHHHHc-CCCCCcCCC--ChHHHHHHH----cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH-CC
Q 013471          243 TSLLVKE-GASLNVDDA--GSFLCTAVA----RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AG  314 (442)
Q Consensus       243 v~~Ll~~-g~~~~~~~~--~~~L~~A~~----~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~-~g  314 (442)
                      +++|+++ |++++..+.  .++...+..    .+..+++++|+++|++++.++..|.||||.|+..|+.+++++|++ .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            8888865 677766543  344333322    234568888999999999999999999999999999999999998 48


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471          315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  352 (442)
Q Consensus       315 a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~  352 (442)
                      ++++.+|.+|+||||+|++.|+.+++++|+++||++..
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            99999999999999999999999999999999998654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-31  Score=234.89  Aligned_cols=182  Identities=21%  Similarity=0.293  Sum_probs=150.3

Q ss_pred             hhhHHHHHHHhcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013471          160 ELALRVNSAAYHGDLYQLKGLIR----AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  235 (442)
Q Consensus       160 ~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  235 (442)
                      .|.||||+||..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            48999999999999999999875    79999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC----------------------------------------cCCCChHHHHHHHcCCHHHHH
Q 013471          236 KCGHDGVTSLLVKEGASLN----------------------------------------VDDAGSFLCTAVARGDSDFLK  275 (442)
Q Consensus       236 ~~~~~~iv~~Ll~~g~~~~----------------------------------------~~~~~~~L~~A~~~g~~~~v~  275 (442)
                      ..++.++++.+........                                        ...+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9998888877765422110                                        012346777777777777888


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 013471          276 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  341 (442)
Q Consensus       276 ~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~  341 (442)
                      .++++|.+.+.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+++|+.++||
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            887777777777777888888888888888888888888888877777888888887777777764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.1e-31  Score=243.38  Aligned_cols=195  Identities=23%  Similarity=0.229  Sum_probs=169.6

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHH
Q 013471          188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFL  262 (442)
Q Consensus       188 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L  262 (442)
                      +..+.+|.||||+||++|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|+++|++++..+  +.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            34678999999999999999999999999988   56788999999999999999999999999999998854  56999


Q ss_pred             HHHHHcCCHHHHHHHHHCCC-----------------------------------------------CCCCCCCCCCcHH
Q 013471          263 CTAVARGDSDFLKRVLSNGV-----------------------------------------------DPSSRDYDHRTPL  295 (442)
Q Consensus       263 ~~A~~~g~~~~v~~Ll~~g~-----------------------------------------------~~~~~~~~g~t~L  295 (442)
                      |+|+..++.+++++|++.+.                                               +++.++..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            99999999999999976431                                               2345778899999


Q ss_pred             HHHHHhChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecC
Q 013471          296 HVAASEGLYLMAKLLLEAGASVFTK-DRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFP  374 (442)
Q Consensus       296 h~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (442)
                      |+|+..|+.+++++|++++++.+.. +..|.||||+|++.|+.+++++|+++|++...              .+..+.+|
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~--------------~d~~g~t~  228 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA--------------RMYGGRTP  228 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------------CCTTSCCH
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCC--------------CCCCCCCH
Confidence            9999999999999999999998764 67899999999999999999999999986432              33456678


Q ss_pred             CCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471          375 FHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  405 (442)
Q Consensus       375 ~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~  405 (442)
                      +|.|...++         ++.++-|++.|++
T Consensus       229 L~~A~~~~~---------~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         229 LGSALLRPN---------PILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTSSC---------HHHHHHHHHTTCC
T ss_pred             HHHHHHCCC---------HHHHHHHHHcCCC
Confidence            999888887         7788888887775

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-30  Score=232.64  Aligned_cols=201  Identities=22%  Similarity=0.182  Sum_probs=180.7

Q ss_pred             hhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCC---CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC--
Q 013471          146 LKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPN---KTDYDGRSPLHLATSRGYEDITLFLIQKGVDI--  220 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--  220 (442)
                      +.......++..+..|.||||+|+..|+.+++++|+++|++++   ..+..|.||+|+|+..+..++++.++..+...  
T Consensus        19 Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (229)
T d1ixva_          19 LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL   98 (229)
T ss_dssp             HHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCT
T ss_pred             HHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccc
Confidence            3333445667788899999999999999999999999999986   45678999999999999999999999987754  


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHH
Q 013471          221 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHV  297 (442)
Q Consensus       221 ~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~  297 (442)
                      ...+..+.||++.++..++.+++++|++.|.+.+..+  ++||||+|+..|+.+++++|++.| .+++.+|.+|+||||+
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~  178 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  178 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhh
Confidence            4567889999999999999999999999999887654  569999999999999999999987 6889999999999999


Q ss_pred             HHHhChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          298 AASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  349 (442)
Q Consensus       298 A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~  349 (442)
                      |+..|+.++|++|++ .|++++.+|..|+||||+|+   +.+++++|+++|++
T Consensus       179 A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             hcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999999999999997 59999999999999999998   46899999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.8e-30  Score=238.97  Aligned_cols=195  Identities=27%  Similarity=0.371  Sum_probs=176.2

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  229 (442)
                      ....++..+..|.||||+|+..|+.+++++|+++|++.+..+..+.|||+.|+..++.++++.|+++|+..+..+..+.+
T Consensus        62 ~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  141 (291)
T d1s70b_          62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT  141 (291)
T ss_dssp             HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCcc
Confidence            34566778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHc-CC----------------------------CCCcCCCChHHHHHHHcCCHHHHHHHHHC
Q 013471          230 PLLEAIKCGHDGVTSLLVKE-GA----------------------------SLNVDDAGSFLCTAVARGDSDFLKRVLSN  280 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~-g~----------------------------~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  280 (442)
                      |+++|+..+..++++.++.. +.                            ......+.||||.|+..|+.++++.|+++
T Consensus       142 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  221 (291)
T d1s70b_         142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (291)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             ccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccc
Confidence            99999999999888888753 22                            11224466999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          281 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       281 g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      |++++.++.+|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++    +++++|.+.++
T Consensus       222 g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~~  285 (291)
T d1s70b_         222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQK  285 (291)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHHH
T ss_pred             eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999975    57777776543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.1e-28  Score=216.39  Aligned_cols=192  Identities=26%  Similarity=0.340  Sum_probs=174.9

Q ss_pred             ccccc-chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCc
Q 013471          152 FHIGK-HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNT  229 (442)
Q Consensus       152 ~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t  229 (442)
                      ..++. .+..|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++............. .......|.+
T Consensus        13 ~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (209)
T d1ot8a_          13 AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT   92 (209)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44544 477899999999999999999999999999999999999999999999999888777765433 3445567889


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA  307 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv  307 (442)
                      +.+.+.........+.|.+.+++++..+  +.|||+.++..+..++++.+++.+.+++..|..|.||||+|+..|+.++|
T Consensus        93 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v  172 (209)
T d1ot8a_          93 PLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEAS  172 (209)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHH
Confidence            9999999999999999999999887754  56999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471          308 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       308 ~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                      ++|+++|+|++.+|..|+||||+|+++|+.++|++|
T Consensus       173 ~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         173 KALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-28  Score=238.29  Aligned_cols=185  Identities=27%  Similarity=0.352  Sum_probs=156.8

Q ss_pred             hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471          161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  240 (442)
Q Consensus       161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~  240 (442)
                      +.||+|.++..++.+....++..+......+..|.||||+|+..++.++++++++.+...+..+..|.||++.|+..++.
T Consensus       198 ~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~  277 (408)
T d1n11a_         198 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV  277 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcH
Confidence            33334443333333333333333333334455677888888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471          241 GVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  318 (442)
Q Consensus       241 ~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~  318 (442)
                      +++++|+++|++++...  ..|||+.++..++.++++++++.|++++.+|.+|.||||+|++.|+.++|++|+++|||++
T Consensus       278 ~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         278 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999988754  4589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          319 TKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       319 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                      .+|.+|+||||+|+++|+.++|++|..
T Consensus       358 ~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         358 EVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             CCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999987754

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.7e-29  Score=208.85  Aligned_cols=153  Identities=27%  Similarity=0.408  Sum_probs=118.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i  242 (442)
                      ++||.||..|+.++|+.|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++.++..|.+|++.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            5788888888888888888888888888888888888765 678888888888888888887777777777777777666


Q ss_pred             HHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCC-CCCCCC
Q 013471          243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKD  321 (442)
Q Consensus       243 v~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga-~~~~~~  321 (442)
                      ++.|++.+.                               +++..+..|.+|||+|+..++.+++++|+++|+ +++.+|
T Consensus        82 ~~~l~~~~~-------------------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d  130 (156)
T d1ihba_          82 LQTLLEFQA-------------------------------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  130 (156)
T ss_dssp             HHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             ccccccccc-------------------------------cccccccccccccccccccccccccccccccccccccccC
Confidence            666665554                               455666677788888888888888888877765 677777


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471          322 RWGNTPLDEGRMCGNKNLIKLLEDAE  347 (442)
Q Consensus       322 ~~g~tpl~~A~~~~~~~~v~~Ll~~~  347 (442)
                      ..|+||||+|++.++.+++++|+++|
T Consensus       131 ~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         131 HKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            78888888888888888888887776

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.7e-29  Score=208.52  Aligned_cols=126  Identities=26%  Similarity=0.351  Sum_probs=110.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHH
Q 013471          196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK  275 (442)
Q Consensus       196 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~  275 (442)
                      +|||+||..|+.++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++                          
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~--------------------------   55 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR--------------------------   55 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHT--------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccc--------------------------
Confidence            7999999999999999999999999999999999998764 5666666666555                          


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471          276 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  353 (442)
Q Consensus       276 ~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~  353 (442)
                           |++++.++..|.++++.++..++.++++.|++++.+++..+..|.+|+++|+..++.+++++|+++++.....
T Consensus        56 -----~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  128 (156)
T d1ihba_          56 -----GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH  128 (156)
T ss_dssp             -----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred             -----ccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 4556677889999999999999999999999999999999999999999999999999999999999854433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-28  Score=206.12  Aligned_cols=151  Identities=26%  Similarity=0.441  Sum_probs=125.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  241 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~  241 (442)
                      ..|+.||..|++++|++|+++ +++++.+|..|+||||+|+ .|+.+++++|++++++++..+..|.+|++.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            358888888999999988875 6788888888899998876 47888888888888888888888888888877777766


Q ss_pred             HHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCC
Q 013471          242 VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  321 (442)
Q Consensus       242 iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~  321 (442)
                      +++++++.|                               ++++.+|..|+||||+|+..|+.+++++|+ .|++++.+|
T Consensus        83 ~~~~~l~~~-------------------------------~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d  130 (156)
T d1bd8a_          83 TLKVLVEHG-------------------------------ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD  130 (156)
T ss_dssp             HHHHHHHTT-------------------------------CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCC
T ss_pred             ccccccccc-------------------------------cccccccCCCCeeecccccccccccccccc-ccccccccC
Confidence            666666554                               455667778899999999999999998877 688999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc
Q 013471          322 RWGNTPLDEGRMCGNKNLIKLLEDA  346 (442)
Q Consensus       322 ~~g~tpl~~A~~~~~~~~v~~Ll~~  346 (442)
                      ..|+||||+|+..|+.+++++|++|
T Consensus       131 ~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         131 ARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.9e-28  Score=203.80  Aligned_cols=149  Identities=30%  Similarity=0.409  Sum_probs=105.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i  242 (442)
                      |||+.|++.|+.++|++|+++|++++ .|..|+||||+|+..++.++++.++.........+..+.              
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------   68 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--------------   68 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCC--------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccc--------------
Confidence            55555555555555555555555444 345555555555555555555555554444444444444              


Q ss_pred             HHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC
Q 013471          243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  322 (442)
Q Consensus       243 v~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~  322 (442)
                                       ++++.++...+.++++++.++|++.+.++.+|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        69 -----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~  131 (153)
T d1awcb_          69 -----------------TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             -----------------CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -----------------cccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCC
Confidence                             455555555566666666666777778889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHH
Q 013471          323 WGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       323 ~g~tpl~~A~~~~~~~~v~~L  343 (442)
                      .|+||||+|+.+|+.+++++|
T Consensus       132 ~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         132 FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.1e-29  Score=234.51  Aligned_cols=206  Identities=22%  Similarity=0.218  Sum_probs=170.5

Q ss_pred             HHHHHHHh-cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHH--------HHcCCCCCCCCCCCCcHHHH
Q 013471          163 LRVNSAAY-HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       163 t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L--------l~~ga~~~~~~~~g~tpL~~  233 (442)
                      ||||.|+. .|+.++++.|.+.+++... +..|+||||+||..|+.++|++|        +++|+|+|.+|..|.||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            45664433 5777788778777766533 24699999999999999988776        56799999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCC---C--------------------------
Q 013471          234 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG---V--------------------------  282 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g---~--------------------------  282 (442)
                      |+..|+.+++++|+++|++++..+  +.||++.|+..++.++++++...+   .                          
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  160 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccc
Confidence            999999999999999999998764  569999999999998888886532   0                          


Q ss_pred             ------------------CCCCCCCCCCcHHHHHHHhChHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471          283 ------------------DPSSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  343 (442)
Q Consensus       283 ------------------~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll-~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L  343 (442)
                                        ..+..+..|+||||+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.+++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~L  240 (277)
T d2fo1e1         161 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL  240 (277)
T ss_dssp             HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                              11235567999999999999999998755 67899999999999999999999999999999


Q ss_pred             HHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          344 EDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       344 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +++|++..              ..+..+.+|+|.|...++
T Consensus       241 l~~gadin--------------~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         241 IQQGASVE--------------AVDATDHTARQLAQANNH  266 (277)
T ss_dssp             HHTTCCSS--------------CCCSSSCCHHHHHHHTTC
T ss_pred             HHCcCCCC--------------CcCCCCCCHHHHHHHcCC
Confidence            99998643              334556678998888877

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.4e-30  Score=248.97  Aligned_cols=192  Identities=18%  Similarity=0.072  Sum_probs=157.6

Q ss_pred             ccchhhhhHHHHHHHhcCCHHHHHH---HHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCc
Q 013471          155 GKHEAELALRVNSAAYHGDLYQLKG---LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD--KFGNT  229 (442)
Q Consensus       155 ~~~~~~~~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--~~g~t  229 (442)
                      ...+..|.|+|++||..|+.+++++   |++.|+++|.++..|.||||+||+.|+.++|++|+++|++++..+  .+|.|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            3445678999999999999887766   789999999999999999999999999999999999999998765  46999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCc-----CCCChHHHHHHHcCCHHHHHHHHHCCCCCCC------------------
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNV-----DDAGSFLCTAVARGDSDFLKRVLSNGVDPSS------------------  286 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~-----~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------  286 (442)
                      |||+|+..|+.+++++|++.|++...     .++.+|++.|+.+|+.+++++|+++|++++.                  
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHH
Confidence            99999999999999999999976532     2344778889999999999999987743321                  


Q ss_pred             ---------------CCCC----------------CCcHHHHHHHhChHHHHHHHHHCCCC-----CCCCCCCCCCHHHH
Q 013471          287 ---------------RDYD----------------HRTPLHVAASEGLYLMAKLLLEAGAS-----VFTKDRWGNTPLDE  330 (442)
Q Consensus       287 ---------------~~~~----------------g~t~Lh~A~~~g~~~iv~~Ll~~ga~-----~~~~~~~g~tpl~~  330 (442)
                                     ...+                +.++|+.|+..|+.+++++|++.+..     .+..+.+|+||||+
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence                           0111                23678888889999999999998754     34455689999999


Q ss_pred             HHHcCCHHHHHHHHHc
Q 013471          331 GRMCGNKNLIKLLEDA  346 (442)
Q Consensus       331 A~~~~~~~~v~~Ll~~  346 (442)
                      |++.|+.++|++|++.
T Consensus       324 A~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         324 ALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHTCTTHHHHHTTS
T ss_pred             HHHcCcHHHHHHHhCC
Confidence            9999999999999974

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.3e-27  Score=211.13  Aligned_cols=196  Identities=25%  Similarity=0.264  Sum_probs=175.1

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013471          174 LYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS  252 (442)
Q Consensus       174 ~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~  252 (442)
                      .++|++|+++|+++|. .|.+|.||||+||..|+.+++++|+++|++++.++..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4799999999999987 589999999999999999999999999999999999999999999999998887777765443


Q ss_pred             CCc---CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHH
Q 013471          253 LNV---DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD  329 (442)
Q Consensus       253 ~~~---~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~  329 (442)
                      ...   ..+.++.+.+.........+.|.+.+++++.++..|+|||+.|+..+..++++.|++++++++..|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence            322   33457888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          330 EGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       330 ~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      +|+..|+.+++++|+++|++..              .++..+.+|+|.|...++
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n--------------~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANRE--------------ITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT--------------CCCTTSCCHHHHHHHTTC
T ss_pred             hhccccHHHHHHHHHHCCCCCC--------------CcCCCCCCHHHHHHHcCC
Confidence            9999999999999999998633              234456678888888777

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.1e-26  Score=193.08  Aligned_cols=123  Identities=29%  Similarity=0.374  Sum_probs=108.1

Q ss_pred             chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471          157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  236 (442)
Q Consensus       157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  236 (442)
                      .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.++++++.++|++++.++..|.||||+|+.
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhh
Confidence            47779999999999999999999999988888888889999999999999999999999999999999999999999988


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471          237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  310 (442)
Q Consensus       237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L  310 (442)
                      .|+.+++++|++.|+                               +++.+|.+|.||||+|+.+|+.+++++|
T Consensus       110 ~g~~~iv~~ll~~ga-------------------------------d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         110 HNHQEVVELLIKYGA-------------------------------DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchhheeeecccccc-------------------------------CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            887777766666554                               5556777888888888888888888876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-27  Score=211.05  Aligned_cols=191  Identities=21%  Similarity=0.234  Sum_probs=159.9

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHH
Q 013471          193 DGRSPLHLATSRGYED----ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAV  266 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~  266 (442)
                      +|.||||+|+..|+.+    +++.+...|++++.+|.+|.||||+|+..|+.+++++|++.|++++..+  +.+||+.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            5999999999999864    4556667899999999999999999999999999999999999998754  458999999


Q ss_pred             HcCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHH
Q 013471          267 ARGDSDFLKRVLSNGVDPS------SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNKNL  339 (442)
Q Consensus       267 ~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~tpl~~A~~~~~~~~  339 (442)
                      ..++.++++.|++.+....      .....|.||||.|+..++.+++++|++.|+.++.++ ..|.||||+|++.|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            9999999999999876543      345678999999999999999999999999988776 579999999999999999


Q ss_pred             HHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhhh
Q 013471          340 IKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDK  406 (442)
Q Consensus       340 v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~k  406 (442)
                      +++|+++|++..              ..+..+.+|+|.|...+.         .+.++.+++...+.
T Consensus       161 v~~Ll~~gad~~--------------~~~~~G~tpl~~A~~~~~---------~~~~~~l~~~~~~~  204 (221)
T d1iknd_         161 VSLLLKCGADVN--------------RVTYQGYSPYQLTWGRPS---------TRIQQQLGQLTLEN  204 (221)
T ss_dssp             HHHHHTTTCCSC--------------CCCTTCCCGGGGCTTSSC---------HHHHHHHHTTSCGG
T ss_pred             HHHHHhcCCccc--------------ccCCCCCCHHHHHHHCCC---------HHHHHHHHHcCCcc
Confidence            999999998543              334557789999888776         55666666654443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.4e-25  Score=193.96  Aligned_cols=177  Identities=25%  Similarity=0.276  Sum_probs=151.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHH
Q 013471          193 DGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAV  266 (442)
Q Consensus       193 ~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~  266 (442)
                      +|.||||+||..|+.++++.|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++.+...  +.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999998875    799999999999999999999999999999999999887744  447788887


Q ss_pred             HcCCHHHHHHHHHC-------------------------------------CCCC-CCCCCCCCcHHHHHHHhChHHHHH
Q 013471          267 ARGDSDFLKRVLSN-------------------------------------GVDP-SSRDYDHRTPLHVAASEGLYLMAK  308 (442)
Q Consensus       267 ~~g~~~~v~~Ll~~-------------------------------------g~~~-~~~~~~g~t~Lh~A~~~g~~~iv~  308 (442)
                      ..++.++++.+...                                     ..+. ......|.++|+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            77777766666542                                     1111 224456899999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471          309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  383 (442)
Q Consensus       309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  383 (442)
                      .++++|.+++.+|..|.||||+|+..|+.+++++|+++|++..              ..+..+.+|+|.|...++
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n--------------~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--------------LKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--------------CCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC--------------CCCCCCCCHHHHHHhCCC
Confidence            9999999999999999999999999999999999999998643              234567789999987766

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.5e-25  Score=201.79  Aligned_cols=172  Identities=26%  Similarity=0.341  Sum_probs=147.5

Q ss_pred             cccccc-chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCC---------------------------------------
Q 013471          151 TFHIGK-HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKT---------------------------------------  190 (442)
Q Consensus       151 ~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------------------------------------  190 (442)
                      ...++. .+..|.||||+|+..|+.+++++|++.+...+..                                       
T Consensus        28 G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (285)
T d1wdya_          28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT  107 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred             CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCc
Confidence            344443 3346889999999999999999999876543111                                       


Q ss_pred             -------------------------------------CCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHH
Q 013471          191 -------------------------------------DYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLL  232 (442)
Q Consensus       191 -------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~  232 (442)
                                                           +..|.||||+|++.|+.+++++|+++ |++++..+..|.++++
T Consensus       108 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~  187 (285)
T d1wdya_         108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  187 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH
T ss_pred             hhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccc
Confidence                                                 12378999999999999999999975 9999999999999988


Q ss_pred             HHHHcCC----HHHHHHHHHcCCCCCcC--CCChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHhChHH
Q 013471          233 EAIKCGH----DGVTSLLVKEGASLNVD--DAGSFLCTAVARGDSDFLKRVLSN-GVDPSSRDYDHRTPLHVAASEGLYL  305 (442)
Q Consensus       233 ~A~~~~~----~~iv~~Ll~~g~~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~  305 (442)
                      .+...+.    .+++++|+++|++++..  .+.||||.|+..|+.+++++|++. |++++.+|.+|.||||+|++.|+.+
T Consensus       188 ~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            7765543    57999999999999875  456999999999999999999985 9999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCC
Q 013471          306 MAKLLLEAGASVFTKDR  322 (442)
Q Consensus       306 iv~~Ll~~ga~~~~~~~  322 (442)
                      +|++|+++|||+|.+|.
T Consensus       268 iv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         268 IAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHHCCCCCCcccC
Confidence            99999999999999874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.4e-26  Score=212.19  Aligned_cols=176  Identities=19%  Similarity=0.194  Sum_probs=124.5

Q ss_pred             cccccc-hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC-------HHHHHHHHHcCCCCCCC
Q 013471          152 FHIGKH-EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY-------EDITLFLIQKGVDINIK  223 (442)
Q Consensus       152 ~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~ga~~~~~  223 (442)
                      ..++.. +..|.||||+||..|+.++|++|+++|++++.+|..|+||||.||..++       .+++++|.+   .+..+
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~  173 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILE  173 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEE
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhc
Confidence            344433 6788999999999999999999999999999999999999999998765       244555443   45667


Q ss_pred             CCCCCcHHHHHHHcCC----HH--------HHHHHHHcCCCCCcC---CCChHHHHHHHcCCHHHHH-----HHHHCCCC
Q 013471          224 DKFGNTPLLEAIKCGH----DG--------VTSLLVKEGASLNVD---DAGSFLCTAVARGDSDFLK-----RVLSNGVD  283 (442)
Q Consensus       224 ~~~g~tpL~~A~~~~~----~~--------iv~~Ll~~g~~~~~~---~~~~~L~~A~~~g~~~~v~-----~Ll~~g~~  283 (442)
                      |..|+||||.++..+.    ..        ++.++...+......   ...++++.+........+.     .++.  ..
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  251 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NM  251 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cC
Confidence            8889999998886554    22        334444544433221   1223333333332222222     2222  33


Q ss_pred             CCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q 013471          284 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  332 (442)
Q Consensus       284 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~  332 (442)
                      +|.+|.+|+||||+|++.|+.++|++|+++||+++.+|+.|+|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            7889999999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-25  Score=180.54  Aligned_cols=120  Identities=28%  Similarity=0.437  Sum_probs=84.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHH
Q 013471          194 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDF  273 (442)
Q Consensus       194 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~  273 (442)
                      +.++||+|+..|+.++|++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|+++                    
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~--------------------   61 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP--------------------   61 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC--------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccc--------------------
Confidence            457788888888888888888888888887777777777553 46666666655555444                    


Q ss_pred             HHHHHHCCCCCCCCCCCCC-cHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471          274 LKRVLSNGVDPSSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  345 (442)
Q Consensus       274 v~~Ll~~g~~~~~~~~~g~-t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~  345 (442)
                                 +.++..|. ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|+.+++++|++
T Consensus        62 -----------~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          62 -----------NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -----------CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -----------ccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                       44444443 57777777777777777777777777777777777777777777777777754

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=7.7e-26  Score=180.91  Aligned_cols=106  Identities=32%  Similarity=0.351  Sum_probs=78.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHH
Q 013471          195 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL  274 (442)
Q Consensus       195 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v  274 (442)
                      .|||++|++.|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|++.                         
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-------------------------   57 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-------------------------   57 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS-------------------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccc-------------------------
Confidence            4677777777777777777777777777777777777777766665555555444                         


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q 013471          275 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  331 (442)
Q Consensus       275 ~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A  331 (442)
                            |++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|
T Consensus        58 ------g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          58 ------GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             ------SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ------cceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence                  444556677788888888888888888888888888888888888888877

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=176.15  Aligned_cols=99  Identities=24%  Similarity=0.299  Sum_probs=89.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCC
Q 013471          258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEGRMCGN  336 (442)
Q Consensus       258 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~-tpl~~A~~~~~  336 (442)
                      ..++||.|+.+|+.+++++|+++|++++.++..|.||||.|+ .|+.+++++|+++|++++.++..|. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            347899999999999999999999999999999999999775 7999999999999999999999876 69999999999


Q ss_pred             HHHHHHHHHcCCCcccccccc
Q 013471          337 KNLIKLLEDAECTQLSEFHYC  357 (442)
Q Consensus       337 ~~~v~~Ll~~~a~~~~~~~~~  357 (442)
                      .+++++|+++|++........
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G  102 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWG  102 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTC
T ss_pred             ccccccccccccccccccCCC
Confidence            999999999999876655443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=176.61  Aligned_cols=121  Identities=29%  Similarity=0.306  Sum_probs=72.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHH
Q 013471          196 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK  275 (442)
Q Consensus       196 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~  275 (442)
                      ++|+.||..|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++|++.|                         
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-------------------------   57 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-------------------------   57 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccc-------------------------
Confidence            4555666666666666666666666666666666655555555544444444333                         


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC-CCCCHHHHH--HHcCCHHHHHHHHHcC
Q 013471          276 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEG--RMCGNKNLIKLLEDAE  347 (442)
Q Consensus       276 ~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~tpl~~A--~~~~~~~~v~~Ll~~~  347 (442)
                            ++++.+|.+|+||||+|+..|+.+++++|+++|++++..+. .|+||+++|  ..+|+.+++++|++.+
T Consensus        58 ------~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          58 ------VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             ------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ------cccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence                  33445555666666666666777777777777777666553 466665544  4556677777776643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=1.5e-27  Score=227.60  Aligned_cols=221  Identities=11%  Similarity=-0.053  Sum_probs=161.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCC-----------CCCCCCChHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCC
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPN-----------KTDYDGRSPLHLATSRGYEDITLF---LIQKGVDINIKDKFGN  228 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~ga~~~~~~~~g~  228 (442)
                      +.++.+...+..++.+.+...+++.+           .++..|.||||+||++|+.+++++   |++.|++++.++..|+
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~  127 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY  127 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCC
Confidence            33444444444555555554443332           345679999999999999887766   7889999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCChHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHh
Q 013471          229 TPLLEAIKCGHDGVTSLLVKEGASLNVD----DAGSFLCTAVARGDSDFLKRVLSNGVDPS---SRDYDHRTPLHVAASE  301 (442)
Q Consensus       229 tpL~~A~~~~~~~iv~~Ll~~g~~~~~~----~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~Lh~A~~~  301 (442)
                      ||||+|++.|+.++|++|++.|++++..    ++.||||+|+.+|+.+++++|++.|++..   ..+.+|.||+|.|+.+
T Consensus       128 taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~  207 (346)
T d2ajaa1         128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  207 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc
Confidence            9999999999999999999999998764    36699999999999999999999997653   3445677888999999


Q ss_pred             ChHHHHHHHHHCCCCCCCC---------------------------------CCCC----------------CCHHHHHH
Q 013471          302 GLYLMAKLLLEAGASVFTK---------------------------------DRWG----------------NTPLDEGR  332 (442)
Q Consensus       302 g~~~iv~~Ll~~ga~~~~~---------------------------------~~~g----------------~tpl~~A~  332 (442)
                      |+.++|++|+++|++++..                                 ...|                .++++.|+
T Consensus       208 g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~  287 (346)
T d2ajaa1         208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN  287 (346)
T ss_dssp             CCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHh
Confidence            9999999999988654321                                 1111                25677788


Q ss_pred             HcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHH
Q 013471          333 MCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIK  401 (442)
Q Consensus       333 ~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~  401 (442)
                      ..++.+++++|++.++.....         ........+.+|+|.|...++         .+.++-|++
T Consensus       288 ~~~~ld~v~~Ll~~~~~~~~~---------~~~~~~~~g~T~LhlA~~~Gn---------~e~v~lLL~  338 (346)
T d2ajaa1         288 DEVLLDDIRFLLSIPGIKALA---------PTATIPGDANELLRLALRLGN---------QGACALLLS  338 (346)
T ss_dssp             CGGGHHHHHHHHTSTTTGGGS---------SCCSSTTCCCHHHHHHHHHTC---------TTHHHHHTT
T ss_pred             cCChHHHHHHHHhCcChhhhc---------ccccCCCCCCcHHHHHHHcCc---------HHHHHHHhC
Confidence            888899999999877643221         111222345678999988888         555555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3e-25  Score=177.44  Aligned_cols=107  Identities=38%  Similarity=0.499  Sum_probs=95.9

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 013471          162 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  241 (442)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~  241 (442)
                      .|||++|++.|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 013471          242 VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA  299 (442)
Q Consensus       242 iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~  299 (442)
                      ++++|+++|+                               +++.+|.+|+||||+|.
T Consensus        83 ~v~~Ll~~Ga-------------------------------d~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGA-------------------------------DKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCC-------------------------------CSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccc-------------------------------cceeeCCCCCCHHHHHh
Confidence            7777766654                               45566777888888773

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-24  Score=172.85  Aligned_cols=93  Identities=30%  Similarity=0.444  Sum_probs=88.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  242 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i  242 (442)
                      ++|+.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCc
Q 013471          243 TSLLVKEGASLNV  255 (442)
Q Consensus       243 v~~Ll~~g~~~~~  255 (442)
                      +++|+++|++++.
T Consensus        83 v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          83 CKFLVESGAAVFA   95 (130)
T ss_dssp             HHHHHHTTCCTTC
T ss_pred             HHHHHHcCCCccc
Confidence            8888888877664

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.9e-23  Score=171.51  Aligned_cols=84  Identities=21%  Similarity=0.208  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471          269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  348 (442)
Q Consensus       269 g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a  348 (442)
                      ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++
T Consensus        59 ~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          59 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             TTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            45567777777778888899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             Cccc
Q 013471          349 TQLS  352 (442)
Q Consensus       349 ~~~~  352 (442)
                      ....
T Consensus       139 ~~~~  142 (154)
T d1dcqa1         139 GRFN  142 (154)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            6443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.4e-22  Score=166.85  Aligned_cols=123  Identities=20%  Similarity=0.199  Sum_probs=103.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCC------CCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471          163 LRVNSAAYHGDLYQLKGLIRAGADPNKT------DYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLLE  233 (442)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  233 (442)
                      ..|+.|+..+++..+..++..|++++..      +..|+||||+|++.   |+.+++++|+++|++++.+|..|.||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            4578999999999999999999887654      67799999999974   67899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC
Q 013471          234 AIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  313 (442)
Q Consensus       234 A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  313 (442)
                      |+..|+.+++++|+++|                               ++++.+|..|+||||+|++.|+.+++++|++.
T Consensus        88 A~~~~~~~~v~~Ll~~g-------------------------------ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGK-------------------------------ASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccC-------------------------------ccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            88887777776666555                               55566778889999999999999999999887


Q ss_pred             CCC
Q 013471          314 GAS  316 (442)
Q Consensus       314 ga~  316 (442)
                      ++.
T Consensus       137 ~~~  139 (154)
T d1dcqa1         137 LSG  139 (154)
T ss_dssp             HTT
T ss_pred             CCC
Confidence            654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-22  Score=168.89  Aligned_cols=131  Identities=28%  Similarity=0.391  Sum_probs=115.9

Q ss_pred             cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471          150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  229 (442)
                      .....+..+..|.||||+|+. |+.+++++|++++.+++..+..|.+|++.|+..++.+++++++++|++++.++..|.|
T Consensus        25 ~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t  103 (156)
T d1bd8a_          25 ELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL  103 (156)
T ss_dssp             TCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCe
Confidence            345567778889999999875 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471          230 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  309 (442)
Q Consensus       230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~  309 (442)
                      |||+|+..|+.+++++|+ .                               |++++.+|.+|+||||+|+..|+.+++++
T Consensus       104 ~L~~A~~~~~~~i~~~L~-~-------------------------------~~~~~~~d~~G~TpL~~A~~~g~~~iv~~  151 (156)
T d1bd8a_         104 PIHLAVQEGHTAVVSFLA-A-------------------------------ESDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHH-T-------------------------------TSCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             eecccccccccccccccc-c-------------------------------cccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999888888777665 3                               34566778889999999999999999999


Q ss_pred             HHHC
Q 013471          310 LLEA  313 (442)
Q Consensus       310 Ll~~  313 (442)
                      |++|
T Consensus       152 Ll~h  155 (156)
T d1bd8a_         152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.4e-22  Score=189.33  Aligned_cols=148  Identities=12%  Similarity=0.020  Sum_probs=96.5

Q ss_pred             ccccccccchhhhhHHHHHHHhcCCH-------HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC----HH--------H
Q 013471          149 DITFHIGKHEAELALRVNSAAYHGDL-------YQLKGLIRAGADPNKTDYDGRSPLHLATSRGY----ED--------I  209 (442)
Q Consensus       149 ~~~~~~~~~~~~~~t~L~~A~~~g~~-------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~----~~--------~  209 (442)
                      +....++..+..|.||||.|+..++.       ++++++.   ..++.+|..|+||||+|+..+.    ..        +
T Consensus       128 ~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~  204 (301)
T d1sw6a_         128 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL  204 (301)
T ss_dssp             HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHH
Confidence            44566777888899999999987652       4444443   3456678889999999987554    22        3


Q ss_pred             HHHHHHcCCCC-CCCCCCCCcHHHHHHHcCCHHHH-----HHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 013471          210 TLFLIQKGVDI-NIKDKFGNTPLLEAIKCGHDGVT-----SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVD  283 (442)
Q Consensus       210 v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~iv-----~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~  283 (442)
                      +.++++.+... ......+.++++.+........+     ..++....+....+|+||||+|++.|+.+++++|+++|++
T Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd  284 (301)
T d1sw6a_         205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD  284 (301)
T ss_dssp             HHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            34555554433 34445566666666555543333     3334444444456678999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHH
Q 013471          284 PSSRDYDHRTPLHVAA  299 (442)
Q Consensus       284 ~~~~~~~g~t~Lh~A~  299 (442)
                      ++.+|..|+|||++|+
T Consensus       285 ~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         285 PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCCCHHHHcC
Confidence            9999999999999986

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=7.1e-06  Score=69.12  Aligned_cols=75  Identities=23%  Similarity=0.456  Sum_probs=71.3

Q ss_pred             hhhhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           61 IIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        61 ~~d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      --.++..+|+.+..++..+++.+++.++|+|++++..++.+++..+....++|++.++.+|+..+.+|++..|.+
T Consensus        46 ~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v  120 (193)
T d1q3ea_          46 EDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV  120 (193)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCE
T ss_pred             HHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeE
Confidence            345678899999999999999999999999999999999999999999999999999999999999999999987

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.35  E-value=9.9e-05  Score=58.08  Aligned_cols=53  Identities=21%  Similarity=0.491  Sum_probs=50.9

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +.++++|+|+++++..+.+++..++...++|++.++.+++..+.+|++..|.+
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v   58 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRL   58 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCC
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCce
Confidence            56789999999999999999999999999999999999999999999999987

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=96.87  E-value=0.00062  Score=52.88  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=51.5

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..+++++|+|++++++.+.++...+....++|++.++.+|+..+.+|++.+|.+
T Consensus        10 ~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v   63 (133)
T d1vp6a_          10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV   63 (133)
T ss_dssp             HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCE
T ss_pred             HHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeecccc
Confidence            366899999999999999999999999999999999999999999999999987

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.79  E-value=0.00078  Score=52.58  Aligned_cols=55  Identities=25%  Similarity=0.387  Sum_probs=51.7

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG  136 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~  136 (442)
                      ...+++.++|++++++.+.+++..+....++|++.++.+|+.++.+|++.+|.+.
T Consensus        19 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~   73 (136)
T d1ne6a1          19 AKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD   73 (136)
T ss_dssp             HHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEE
T ss_pred             HHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCcee
Confidence            4577889999999999999999999999999999999999999999999999873

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.00069  Score=53.58  Aligned_cols=53  Identities=23%  Similarity=0.401  Sum_probs=50.8

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      .+++++|+|++.++..+.++...+....++|++.++.+|+.++.+|++.+|.+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v   54 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEV   54 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEE
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceE
Confidence            46789999999999999999999999999999999999999999999999987

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.62  E-value=0.0011  Score=51.21  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=50.7

Q ss_pred             hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      .+++++|+|+++++..+.+++..+....|++++.++.+|+..+.+|++..|.+
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v   54 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSA   54 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCE
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999987

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.0021  Score=49.85  Aligned_cols=54  Identities=24%  Similarity=0.442  Sum_probs=51.5

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ...+.++++|++.+++.+..++..+....++|++.++.+|+..+.+|++..|.+
T Consensus        15 ~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v   68 (136)
T d1cx4a1          15 QEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF   68 (136)
T ss_dssp             HHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEE
T ss_pred             HHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhhee
Confidence            467789999999999999999999999999999999999999999999999987

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0038  Score=49.64  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             HHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        75 ~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ..........+.++++|..++++.+.+++..+..+.++|++.++.+|+..+.+|++.+|.+
T Consensus        16 ~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v   76 (155)
T d1o7fa2          16 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL   76 (155)
T ss_dssp             HHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred             HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccch
Confidence            3334445556689999999999999999999999999999999999999999999999986

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.008  Score=45.56  Aligned_cols=55  Identities=13%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             hhhhhhcccCccCCCHHHHHHHHHhccc-ccccCcceeeecCcccceeEEEeeccc
Q 013471           81 YMPYIEKVSLFKGCSSEFINQIVIRVHE-EFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        81 ~~~~v~~~~lf~~~s~~~l~~lv~~~~~-e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      ....+.++|+|+..+++.+.+++..+.. .++++++.++.+|+....+|++.+|.+
T Consensus         8 i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v   63 (124)
T d1o7fa3           8 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSV   63 (124)
T ss_dssp             HHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEE
T ss_pred             HHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceE
Confidence            4456689999999999999999999986 556789999999999999999999987

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.60  E-value=0.0099  Score=46.49  Aligned_cols=54  Identities=28%  Similarity=0.416  Sum_probs=48.3

Q ss_pred             hhhhhcccCccCCCHHHHHHHHHhccc--ccccCcceeeecCcccceeEEEeeccc
Q 013471           82 MPYIEKVSLFKGCSSEFINQIVIRVHE--EFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~--e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      .+.+.++|+|++++++.+.+++..++.  ..+.+++.++.+|+..+.+|++.+|.+
T Consensus         5 ~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v   60 (147)
T d1zyba2           5 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI   60 (147)
T ss_dssp             HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred             HHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceE
Confidence            456689999999999999999988764  458999999999999999999999987

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=88.03  E-value=0.25  Score=37.60  Aligned_cols=46  Identities=9%  Similarity=0.234  Sum_probs=44.1

Q ss_pred             CccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471           90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (442)
Q Consensus        90 lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~  135 (442)
                      +|+..+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus         8 lf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v   53 (142)
T d2gaua2           8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKI   53 (142)
T ss_dssp             HHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCE
T ss_pred             HHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecce
Confidence            5899999999999999999999999999999999999999999987

>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.45  E-value=0.29  Score=34.48  Aligned_cols=55  Identities=20%  Similarity=0.202  Sum_probs=43.5

Q ss_pred             eEEEccCcHHHHHHHHhhhcCCCCC----CcccccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          388 IVLWVPHNIEELIKLAVDKLDFPDG----HSILSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       388 ~~~~lp~~~~~ll~~~~~k~~~~~~----~~~~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      +.-..-.++++|+.-+.++|+...+    +-++.+||-+||+   ...+-|+=.|.++..+|
T Consensus        31 r~GV~A~SL~eL~~K~~~~l~i~~~~~~v~lvLeeDGTeVd~EeYF~tLp~nT~lm~L~~gq   92 (100)
T d1f2ri_          31 QHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALACNE   92 (100)
T ss_dssp             EEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECSSS
T ss_pred             eeeEEcCCHHHHHHHHHHHhCCCCCccceEEEEeCCCcEEccHHHHhcCCCCCEEEEECCCC
Confidence            3445678999999999999999643    2356789999977   77888888888887665

>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Cell death-inducing effector B (CIDE-B), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.28  Score=35.73  Aligned_cols=56  Identities=20%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             ceEEEccCcHHHHHHHHhhhcCCCCCCcc-cccCCceeeE---eeeeecCCeEEEeecCC
Q 013471          387 GIVLWVPHNIEELIKLAVDKLDFPDGHSI-LSEDGGKILD---VDMINDGQKLYLISETQ  442 (442)
Q Consensus       387 ~~~~~lp~~~~~ll~~~~~k~~~~~~~~~-~~~~~~~i~~---i~~ird~d~~~~~~~~~  442 (442)
                      .+.-..-.+++||+.-|.++|+...+.++ +.+||-+|||   ...+-|+=.|.+++.+|
T Consensus        47 ~rkGV~A~SL~EL~~K~~~~L~i~~~~~lvLeeDGT~Vd~EeYFqtL~~nT~lmvL~~gq  106 (122)
T d1d4ba_          47 IRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQ  106 (122)
T ss_dssp             CEEEEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSC
T ss_pred             eeeeEEcCCHHHHHHHHHHHhCCCCCeEEEEeCCCCEECchhHhhccCCCCEEEEECCCC
Confidence            34445678999999999999999877655 6689999977   77777888877777654

>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.09  E-value=0.92  Score=30.51  Aligned_cols=51  Identities=20%  Similarity=0.386  Sum_probs=40.8

Q ss_pred             ccCcHHHHHHHHhhhcCCCCC-Cc-ccccCCceeeE--eeeeecCCeEEEeecCC
Q 013471          392 VPHNIEELIKLAVDKLDFPDG-HS-ILSEDGGKILD--VDMINDGQKLYLISETQ  442 (442)
Q Consensus       392 lp~~~~~ll~~~~~k~~~~~~-~~-~~~~~~~~i~~--i~~ird~d~~~~~~~~~  442 (442)
                      .-.|+++|+.-+.++|+.+.+ .+ ++.+||-+|++  ...+-|+=.|.++..+|
T Consensus        22 ~A~sL~eL~~K~~~~l~~~~~~~~lvLeeDGT~V~EeYF~tLp~nT~lm~L~~ge   76 (81)
T d1ibxa_          22 AGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELTEDYFPSVPDNAELVLLTLGQ   76 (81)
T ss_dssp             CCSSHHHHHHHHHHHTTCCTTTSEEEESSSCSCCCSSSCSSCCSCCCEEEECSSS
T ss_pred             EcCCHHHHHHHHHHHhCCCCcCcEEEEecCCcEeeHHHHhcCCCCcEEEEECCCC
Confidence            468899999999999998554 33 46789999966  77888888888887665