Citrus Sinensis ID: 013476

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQINDSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHccccEEEEccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEcHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHHHHHHHcccEEEccEEEcEEEEcccccEEEEEEEEEcccccEEEEEEcEEEEcccccHHHHcccccccccccEEEccccEEEEcccccccccEEEEcccccccEEEEEEccccEEEEcccccccccccccccHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccccccccEEEEEcccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccccccccHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHcccEEEEEEcHHccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccHHccHHHHHHHHHHHHHHHccccccccEEEcHHHHHHHccHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEEEEcccccHHHHHHcccccccccEcccccEEEEEcccccccccEEEcccccccEEEEEEcccccEEEEcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccHHHHHcccEEEEccccEEEEEcccEEEccc
Coil and Loop (DISEMBL)
MSATRIRRFGAVLAAAAGGTSillftrpsiagndrgpspdlvrsqindskavvpsrvVQESALiaannsnpldILVIGGGATGCGVALDAATRGLRVGLveredfssgtssrstklihGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIrnaphlsnalpcmtpcfdWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGArirnnlsgkefdTYAKVVVNAAGPFCDSVRKLAdqnvqpmicpssgvhivlpdyyspegmglivpktkdgrvVFMLpwlgrtvagttdsdtvitllpephedEIQFILDAISDYLNVKVRRTDVLsawsgirplamdpsakntesisrdhvvcedfpglvtitggkwttyrr
Flexible Loop (DISEMBL)
MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQINDSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVeredfssgtssrstklihgGVRYLEKAVFNLDYGQLKLVFHALEERKQVIrnaphlsnalpcmtpCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIkdeasnriigarirnnlsgkeFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLgrtvagttdSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSawsgirplamdpsAKNTESIsrdhvvcedfpglvtitggkwttyrr
Low Complexity Region (SEG)
MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQINDSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRlnvglaltaalagaavlnhaEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR
Disordered region (IsUnstruct)
*****IRRFGAVLAAAAGGTSILLFTRP****************************VVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVER***********TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLA***********SRDHVVCEDFPGLVTITGGKWTTY**
Disordered Region (DISOPRED)
********FGAVLAAAAGGTSILLFTR*******************************************PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL********ICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIR******************VVCEDFPGLVTITGGKWTTYRR
Disordered Region (DISEMBL)
MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQINDSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVER************KLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR
Disordered Region (DISPRO)
*SATRIRRFGAVLAAAAGGTSILLFTRPSI******************SKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQINDSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q9SS48	629	Glycerol-3-phosphate dehy	yes	no	0.997	0.701	0.803	0.0
P43304	727	Glycerol-3-phosphate dehy	yes	no	0.861	0.524	0.563	1e-122
A7DZP8	727	Glycerol-3-phosphate dehy	N/A	no	0.859	0.522	0.574	1e-122
A6QLU1	727	Glycerol-3-phosphate dehy	yes	no	0.861	0.524	0.555	1e-121
P35571	727	Glycerol-3-phosphate dehy	yes	no	0.861	0.524	0.581	1e-119
Q64521	727	Glycerol-3-phosphate dehy	yes	no	0.861	0.524	0.578	1e-119
Q4R755	727	Glycerol-3-phosphate dehy	N/A	no	0.861	0.524	0.560	1e-118
P90795	722	Probable glycerol-3-phosp	yes	no	0.866	0.530	0.512	1e-106
Q8SR40	614	Probable glycerol-3-phosp	yes	no	0.850	0.612	0.429	5e-91
O14400	649	Glycerol-3-phosphate dehy	yes	no	0.904	0.616	0.455	5e-91

>sp|Q9SS48|SDP6_ARATH Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial OS=Arabidopsis thaliana GN=SDP6 PE=1 SV=1

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/443 (80%), Positives = 393/443 (88%), Gaps = 2/443 (0%)

Query: 1   MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSP--DLVRSQINDSKAVVPSRVV 58
           MS   IRR  A  A  A  +   ++  PS+A +D+G  P  D +R ++ D  A VPSR  
Sbjct: 1   MSLASIRRLAAGAAVIAAASGGAVYLSPSVASSDKGGGPILDSLRRRLGDPTASVPSRSA 60

Query: 59  QESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118
           QESALIAA  S+PLD+LVIGGGATG GVALDA TRGLRVGLVEREDFSSGTSSRSTKLIH
Sbjct: 61  QESALIAATASDPLDVLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLIH 120

Query: 119 GGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVG 178
           GGVRYLEKAVFNLDYGQLKLVFHALEERKQ+I NAPHL +ALPCMTPCFDWFEV+Y+W+G
Sbjct: 121 GGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFEVIYFWMG 180

Query: 179 LKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGL 238
           LKMYDLVAG  LLHLSRYYSA+ES ELFPTLA K KD++L+G VVYYDGQMNDSRLNVGL
Sbjct: 181 LKMYDLVAGPRLLHLSRYYSAKESIELFPTLARKGKDKNLRGTVVYYDGQMNDSRLNVGL 240

Query: 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298
           A TAALAGAAVLNHAEV+SLI D+A+ RIIGARIRNNL+G+EF++YAKVVVNAAGPFCDS
Sbjct: 241 ACTAALAGAAVLNHAEVVSLITDDATKRIIGARIRNNLTGQEFNSYAKVVVNAAGPFCDS 300

Query: 299 VRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 358
           +RK+ D++ +PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD
Sbjct: 301 IRKMIDEDTKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 360

Query: 359 SDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISR 418
           S+T IT LPEPHEDEIQFILDAISDYLN+KVRRTDVLSAWSGIRPLAMDP+AK+TESISR
Sbjct: 361 SNTSITSLPEPHEDEIQFILDAISDYLNIKVRRTDVLSAWSGIRPLAMDPTAKSTESISR 420

Query: 419 DHVVCEDFPGLVTITGGKWTTYR 441
           DHVV E+ PGLVTITGGKWTTYR
Sbjct: 421 DHVVFEENPGLVTITGGKWTTYR 443

Required for glycerol catabolism and involved in NADH/NAD(+) homeostasis. Essential for postgerminative growth and seedling establishment.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 5EC: .EC: 3

>sp|P43304|GPDM_HUMAN Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Homo sapiens GN=GPD2 PE=1 SV=3

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/394 (56%), Positives = 281/394 (71%), Gaps = 13/394 (3%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           PSR   E+ L+   N++  DILVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct: 55  PSR---EAQLLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
           TKLIHGGVRYL+KA+  LD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct: 112 TKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPVYKWWQLP 171

Query: 174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
           YYWVG+K+YDLVAG + L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct: 172 YYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPML---QKDK-LVGAIVYYDGQHNDAR 227

Query: 234 LNVGLALTAALAGAAVLNHAEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
           +N+ +ALTAA  GAA  N+ EV+SL+K         R+ GAR ++ L+G+EFD  AK V+
Sbjct: 228 MNLAIALTAARYGAATANYMEVVSLLKKTDPQTGKVRVSGARCKDVLTGQEFDVRAKCVI 287

Query: 290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
           NA GPF DSVRK+ D++   +  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct: 288 NATGPFTDSVRKMDDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQ 347

Query: 350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAMD 407
             T+AGTTD+ T +T  P P E++I FIL+ + +YL  +V+VRR DVL+AWSGIRPL  D
Sbjct: 348 KMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query: 408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
           P + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct: 408 PKSADTQSISRNHVVDISESGLITIAGGKWTTYR 441

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|A7DZP8|GPDM_MESAU Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=GPD2 PE=1 SV=1

 Score =  440 bits (1131), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/395 (57%), Positives = 282/395 (71%), Gaps = 15/395 (3%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           PSR   E+ L+   N++  DILVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct: 55  PSR---EAQLLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
           TKLIHGGVRYL+KA+  LD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct: 112 TKLIHGGVRYLQKAIMKLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPIYKWWQLP 171

Query: 174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
           YYWVG+K+YDLVAG + L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct: 172 YYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPML---QKDK-LVGAIVYYDGQHNDAR 227

Query: 234 LNVGLALTAALAGAAVLNHAEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
           +N+ +ALTAA  GAA  N+ EV+SL+K    +    R+ GAR ++ L+G EFD  AK V+
Sbjct: 228 MNLAIALTAARYGAATANYREVVSLLKKTDPETGKERVSGARCKDVLTGLEFDVRAKCVI 287

Query: 290 NAAGPFCDSVRKLADQNVQPMIC-PSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW 348
           NA GPF DSVRK+ D N  P IC PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW
Sbjct: 288 NATGPFTDSVRKM-DDNKAPAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPW 346

Query: 349 LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAM 406
              T+AGTTDS T  T  P P E++I FIL+ + +YL  +V+VRR DVL+AWSGIRPL +
Sbjct: 347 ENMTIAGTTDSPTKNTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVI 406

Query: 407 DPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
           DP + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct: 407 DPKSADTQSISRNHVVDVSESGLITIAGGKWTTYR 441

Mesocricetus auratus (taxid: 10036)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|A6QLU1|GPDM_BOVIN Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Bos taurus GN=GPD2 PE=2 SV=1

 Score =  437 bits (1123), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/394 (55%), Positives = 281/394 (71%), Gaps = 13/394 (3%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           PSR   E+ ++   N++  D+LVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct: 55  PSR---EAQILTLKNTSEFDVLVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
           TKLIHGGVRYL+KA+  LD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct: 112 TKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPIYKWWQLP 171

Query: 174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
           YYWVG+K+YDLVAG + L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct: 172 YYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPML---QKDK-LVGAIVYYDGQHNDAR 227

Query: 234 LNVGLALTAALAGAAVLNHAEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
           +N+ +ALTAA  GAA  N+ EV+SL+K         R+ GAR ++ L+G+EFD  AK V+
Sbjct: 228 MNLAIALTAARYGAATANYMEVMSLLKKTDPQTGKERVSGARCKDVLTGEEFDVRAKCVI 287

Query: 290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
           NA GPF D+VRK+ D++   +  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct: 288 NATGPFTDTVRKMDDKDTTAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQ 347

Query: 350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAMD 407
             T+AGTTD+ T +T  P P E++I FIL+ + +YL  +V+VRR DVL+AWSGIRPL  D
Sbjct: 348 KMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query: 408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
           P + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct: 408 PKSADTKSISRNHVVDISESGLITIAGGKWTTYR 441

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|P35571|GPDM_RAT Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Gpd2 PE=1 SV=1

 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/394 (58%), Positives = 283/394 (71%), Gaps = 13/394 (3%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           PSR   E+ L+   N++  DILVIGGGATGCG ALDA TRGL+  LVER DF+SGTSSRS
Sbjct: 55  PSR---EAQLMTLQNTSEFDILVIGGGATGCGCALDAVTRGLKTALVERNDFASGTSSRS 111

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
           TKLIHGGVRYL+KA+ NLD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct: 112 TKLIHGGVRYLQKAITNLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLP 171

Query: 174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
           YYWVG+KMYDLVAG H L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct: 172 YYWVGIKMYDLVAGSHCLKSSYVLSKSRALEHFPML---QKDK-LVGAIVYYDGQHNDAR 227

Query: 234 LNVGLALTAALAGAAVLNHAEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
           +N+ +ALTAA  GAA  N+ EV+SL+K    +    R+ GAR ++ L+G EF+  AK V+
Sbjct: 228 MNLAIALTAARYGAATANYMEVVSLLKKTDPETGKERVSGARCKDVLTGHEFNVRAKCVI 287

Query: 290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
           NA GPF DSVRK+ D +V P+  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct: 288 NATGPFTDSVRKMDDNDVVPICQPSAGVHIVMPGYYSPENMGLLDPATSDGRVIFFLPWE 347

Query: 350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAMD 407
             T+AGTTDS T +T  P P ED+I FIL+ + +YL  +V+VRR DVL+AWSGIRPL  D
Sbjct: 348 KMTIAGTTDSPTDVTHHPIPSEDDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query: 408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
           P + NT+SISR+HVV     GL+TI GGKWTTYR
Sbjct: 408 PKSANTQSISRNHVVEVSDSGLITIAGGKWTTYR 441

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|Q64521|GPDM_MOUSE Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Mus musculus GN=Gpd2 PE=1 SV=2

 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/394 (57%), Positives = 285/394 (72%), Gaps = 13/394 (3%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           PSR   E+ L+   N+   DILVIGGGATGCG ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct: 55  PSR---EAQLMTLKNTPEFDILVIGGGATGCGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
           TKLIHGGVRYL+KA+ NLD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct: 112 TKLIHGGVRYLQKAIMNLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLP 171

Query: 174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
           YYWVG+KMYDLVAG   L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct: 172 YYWVGIKMYDLVAGSQCLKSSYVLSKSRALEHFPML---QKDK-LVGAIVYYDGQHNDAR 227

Query: 234 LNVGLALTAALAGAAVLNHAEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
           +N+ +ALTAA  GAA  N+ EV+SL+K    +    R+ GAR ++ L+G+EFD  AK V+
Sbjct: 228 MNLAIALTAARYGAATANYMEVVSLLKKTDPETGKERVSGARCKDVLTGQEFDVRAKCVI 287

Query: 290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
           NA+GPF DSVRK+ D+NV P+  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct: 288 NASGPFTDSVRKMDDKNVVPICQPSAGVHIVMPGYYSPENMGLLDPATSDGRVIFFLPWE 347

Query: 350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAMD 407
             T+AGTTD+ T +T  P P E++I FIL+ + +YL  +V+VRR DVL+AWSGIRPL  D
Sbjct: 348 KMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSSDVEVRRGDVLAAWSGIRPLVTD 407

Query: 408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
           P + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct: 408 PKSADTQSISRNHVVDISDSGLITIAGGKWTTYR 441

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|Q4R755|GPDM_MACFA Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GPD2 PE=2 SV=1

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/394 (56%), Positives = 281/394 (71%), Gaps = 13/394 (3%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           PSR   E+ L+   N++  DILVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct: 55  PSR---EAQLLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
           TKLIHGGVRYL+KA+  LD  Q ++V  AL ER  ++  APHLS  LP + P + W+++ 
Sbjct: 112 TKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIVLPVYKWWQLP 171

Query: 174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
           YYWVG+K+YDLVAG + L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct: 172 YYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPML---QKDK-LVGAIVYYDGQHNDAR 227

Query: 234 LNVGLALTAALAGAAVLNHAEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
           +N+ +ALTAA  GAA  N+ EV+SL+K         R+ GAR ++ L+G+EFD  AK V+
Sbjct: 228 MNLAIALTAARYGAATANYMEVVSLLKKTDPQTGKVRVSGARCKDVLTGQEFDVRAKCVI 287

Query: 290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
           NA GPF DSVRK+ D++   +  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct: 288 NATGPFTDSVRKMDDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQ 347

Query: 350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAMD 407
             T+AGTTD+ T +T  P P E++I FIL+ + +YL  +V+VRR DVL+AWSGIRPL  D
Sbjct: 348 KMTIAGTTDTPTDVTPHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query: 408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
           P + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct: 408 PKSADTQSISRNHVVDISESGLITIAGGKWTTYR 441

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|P90795|GPDM_CAEEL Probable glycerol-3-phosphate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T25G3.4 PE=3 SV=2

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/394 (51%), Positives = 273/394 (69%), Gaps = 11/394 (2%)

Query: 51  AVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS 110
           + +P+R   +  L   +     D+L+IGGGATG GVALDA TRGL+  LVE +DFSSGTS
Sbjct: 57  SALPTR---KDILTNLSKGEEFDVLIIGGGATGAGVALDAQTRGLKTALVELDDFSSGTS 113

Query: 111 SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWF 170
           SRSTKLIHGGVRYL+ A+  LD  Q ++V  AL ER  ++  APHLS+ LP M P +  +
Sbjct: 114 SRSTKLIHGGVRYLQAAIMKLDLEQYRMVKEALFERHNLLEIAPHLSSPLPIMLPIYKLW 173

Query: 171 EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230
           +V YYW G+K YD V+G+ +L  S + +  ++ E FP L    ++ SLKGA++YYDGQ N
Sbjct: 174 QVPYYWSGIKAYDFVSGKRVLKNSFFINKSQALERFPML----RNESLKGALIYYDGQHN 229

Query: 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN 290
           D+R+N+ + LTA   GAA  NH  V  L KDE + ++IGA +R+ ++G E+D  AK V+N
Sbjct: 230 DARMNLAIILTAIRHGAACANHVRVEKLNKDE-TGKVIGAHVRDMVTGGEWDIKAKAVIN 288

Query: 291 AAGPFCDSVRKLAD-QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
           A GPF DS+R + D +  +P+  PSSGVHI LP YYSP   GL+ P T DGRV+F LPW 
Sbjct: 289 ATGPFTDSIRLMGDPETARPICAPSSGVHITLPGYYSPSNTGLLDPDTSDGRVIFFLPWE 348

Query: 350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAMD 407
             T+AGTTD+ + +TL P+P + +I+FIL  I  YL  +V VRR DV+SAWSG+RPL  D
Sbjct: 349 RMTIAGTTDAPSDVTLSPQPTDHDIEFILQEIRGYLSKDVSVRRGDVMSAWSGLRPLVRD 408

Query: 408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
           P+ K+T+S++R+H++     GL+TI GGKWTTYR
Sbjct: 409 PNKKDTKSLARNHIIEVGKSGLITIAGGKWTTYR 442

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|Q8SR40|GPDH_ENCCU Probable glycerol-3-phosphate dehydrogenase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU10_0870 PE=3 SV=1

 Score =  335 bits (858), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 165/384 (42%), Positives = 244/384 (63%), Gaps = 8/384 (2%)

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
            A+I    S   D++V+GGG+TG G ALD ATRGL+V LV+  DF SGTSS+STKL+HGG
Sbjct: 45  EAMIERLRSEVFDLVVVGGGSTGAGCALDGATRGLKVALVDAGDFGSGTSSKSTKLVHGG 104

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
           VRYL KAV NLD+ Q KLV+ AL ER  +   +P+L+N++  M P +    + YY+VGLK
Sbjct: 105 VRYLAKAVSNLDWSQYKLVWQALGERTTMFEISPYLTNSIKIMVPIYSKILIPYYYVGLK 164

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLAL 240
           +YD ++G   L  S +   +E+ + FP +  K    +L GA+VY+DGQ +D+R NV + +
Sbjct: 165 LYDWISGFKSLGKSYFIDRKEAVDAFPHINKK----NLCGAMVYFDGQQDDARNNVMIVM 220

Query: 241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300
           TA   GA   NH    SL+ +    +I+G R R+ ++G E +     V+N+ G   D +R
Sbjct: 221 TAVCHGAVAANHVSARSLMIE--GGKIVGVRCRDEITGSEIEIRGTGVINSTGNLADDLR 278

Query: 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSD 360
           ++ D + + +I  SSG HIV+P  Y+P+ MG + P T D R+ F +PW+G+T+ G+TD  
Sbjct: 279 RMDDADAREIIVQSSGTHIVIPKEYAPKEMGFLDPLTSDNRIAFFMPWMGKTIVGSTDIK 338

Query: 361 TVITLLPEPHEDEIQFILDAISDY--LNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISR 418
           T   L P P E++++F++  +  Y  ++ K+ R +V + W+GIRPL  DP   +T SI R
Sbjct: 339 TKTELSPSPTEEDLEFLIHEVQAYTSMHPKLTRDEVSAVWTGIRPLVKDPDVSDTGSIVR 398

Query: 419 DHVVCEDFPGLVTITGGKWTTYRR 442
            H V  +  GL+T+TGGKWT YR+
Sbjct: 399 KHFVRIEKNGLLTVTGGKWTIYRK 422

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

>sp|O14400|GPDM_SCHPO Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gut2 PE=3 SV=1

 Score =  335 bits (858), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/430 (45%), Positives = 260/430 (60%), Gaps = 30/430 (6%)

Query: 35  RGPSPDLVRSQIN---DSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAA 91
           + P+P     Q      S A  PSR   E+ L    + +  D+L+IGGGATG GVA+DA+
Sbjct: 31  KRPAPSHFNPQFTPFTKSLAPPPSR---ETLLKNVEDISKFDVLIIGGGATGTGVAVDAS 87

Query: 92  TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIR 151
           TRGL V L+E+ DF+S TSS+STK+ HGGVRYLEKAVF L   QL LV  AL ER  ++R
Sbjct: 88  TRGLNVCLLEKTDFASETSSKSTKMAHGGVRYLEKAVFQLSKAQLDLVIEALNERANMLR 147

Query: 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAM 211
            APHL   LP M P + W++V Y++VG K+YD VAG   L  S  +S + +  + P L  
Sbjct: 148 TAPHLCTVLPIMIPVYKWWQVPYFFVGCKIYDWVAGSKNLRASTIFSKETTVAIAPML-- 205

Query: 212 KAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 271
              D +LK + VY+DG  ND+R+N  LA+TA   GA VLN+ EV  L+K +  N++ G  
Sbjct: 206 --DDSNLKASCVYHDGSFNDTRMNTTLAVTAIDNGATVLNYMEVKKLLKSK-DNKLEGVL 262

Query: 272 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNVQP--------MICPSSGVHIVLP 322
             +  +GKE+   A  VVNA GPF D + ++ AD   +P        M+ PS+GVH+VLP
Sbjct: 263 AIDRETGKEYQIKATSVVNATGPFSDKILEMDADPQGEPPKTAQFPRMVVPSAGVHVVLP 322

Query: 323 DYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSD-TVITLLPEPHEDEIQFILDAI 381
           +YY P  +G++ P T D RV+F LPW G+ +AGTTD   + +   P P ED+IQ IL  +
Sbjct: 323 EYYCPPNIGILDPSTSDNRVMFFLPWQGKVIAGTTDKPLSSVPTNPTPSEDDIQLILKEL 382

Query: 382 SDYLNVKVRRTDVLSAWSGIRPLAMDPS---------AKNTESISRDHVVCEDFPGLVTI 432
             YL   V R DVLSAW GIRPL  DPS            T+ + R H + +   GL+TI
Sbjct: 383 QKYLVFPVDREDVLSAWCGIRPLVRDPSTVPPGTDPTTGETQGLVRSHFIFKSDTGLLTI 442

Query: 433 TGGKWTTYRR 442
           +GGKWTTYR 
Sbjct: 443 SGGKWTTYRE 452

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
225448978	629	PREDICTED: glycerol-3-phosphate dehydrog	0.993	0.697	0.845	0.0
296085983	644	unnamed protein product [Vitis vinifera]	0.993	0.681	0.845	0.0
224109816	631	predicted protein [Populus trichocarpa]	0.988	0.692	0.821	0.0
449444901	644	PREDICTED: glycerol-3-phosphate dehydrog	0.984	0.675	0.827	0.0
147865194	619	hypothetical protein VITISV_023568 [Viti	0.970	0.693	0.832	0.0
15228273	629	glycerol-3-phosphate dehydrogenase SDP6	0.997	0.701	0.803	0.0
255577446	631	glycerol-3-phosphate dehydrogenase, puta	0.988	0.692	0.831	0.0
343172054	626	glycerol-3-phosphate dehydrogenase, part	0.986	0.696	0.787	0.0
356500417	629	PREDICTED: glycerol-3-phosphate dehydrog	0.990	0.696	0.819	0.0
343172056	626	glycerol-3-phosphate dehydrogenase, part	0.986	0.696	0.782	0.0

>gi|225448978|ref|XP_002273219.1| PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial-like [Vitis vinifera]

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/441 (84%), Positives = 397/441 (90%), Gaps = 2/441 (0%)

Query: 2   SATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRG-PSPDLVRSQINDSKAVVPSRVVQE 60
           ++TR+RR G V AA A    + L   P I+ +DRG PS D VR +I DS  VVPSR VQE
Sbjct: 4   TSTRLRRLGTVAAAVALSAGVTL-RDPPISSSDRGGPSLDAVRRKIADSNGVVPSRAVQE 62

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
           SALI ++  NPLDILV+GGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKL+HGG
Sbjct: 63  SALIGSSAVNPLDILVVGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLLHGG 122

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
           VRYLEKAVFNLDYGQLKLVFHALEERKQVI NAPHL  ALPCMTPCFDWFEVVYYW+GLK
Sbjct: 123 VRYLEKAVFNLDYGQLKLVFHALEERKQVIENAPHLCQALPCMTPCFDWFEVVYYWMGLK 182

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLAL 240
           +YDLVAG  LLHLSRYYSAQES ELFPTLA   KDRSL+G VVYYDGQMNDSRLNV LA 
Sbjct: 183 LYDLVAGSRLLHLSRYYSAQESVELFPTLARNGKDRSLRGTVVYYDGQMNDSRLNVALAC 242

Query: 241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300
           TAALAGAAVLNHAEV+SL+ DE SN+IIGARIR+NLSGKEFDTYAKVVVNAAGPFCDSVR
Sbjct: 243 TAALAGAAVLNHAEVVSLLMDEVSNQIIGARIRDNLSGKEFDTYAKVVVNAAGPFCDSVR 302

Query: 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSD 360
           K+AD+  QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS+
Sbjct: 303 KMADKESQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSN 362

Query: 361 TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDH 420
           T IT+LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLA+DP AK+TESISRDH
Sbjct: 363 TSITMLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAVDPKAKSTESISRDH 422

Query: 421 VVCEDFPGLVTITGGKWTTYR 441
           VVCED PGLVTITGGKWTTYR
Sbjct: 423 VVCEDHPGLVTITGGKWTTYR 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085983|emb|CBI31424.3| unnamed protein product [Vitis vinifera]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/441 (84%), Positives = 397/441 (90%), Gaps = 2/441 (0%)

Query: 2   SATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRG-PSPDLVRSQINDSKAVVPSRVVQE 60
           ++TR+RR G V AA A    + L   P I+ +DRG PS D VR +I DS  VVPSR VQE
Sbjct: 4   TSTRLRRLGTVAAAVALSAGVTL-RDPPISSSDRGGPSLDAVRRKIADSNGVVPSRAVQE 62

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
           SALI ++  NPLDILV+GGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKL+HGG
Sbjct: 63  SALIGSSAVNPLDILVVGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLLHGG 122

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
           VRYLEKAVFNLDYGQLKLVFHALEERKQVI NAPHL  ALPCMTPCFDWFEVVYYW+GLK
Sbjct: 123 VRYLEKAVFNLDYGQLKLVFHALEERKQVIENAPHLCQALPCMTPCFDWFEVVYYWMGLK 182

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLAL 240
           +YDLVAG  LLHLSRYYSAQES ELFPTLA   KDRSL+G VVYYDGQMNDSRLNV LA 
Sbjct: 183 LYDLVAGSRLLHLSRYYSAQESVELFPTLARNGKDRSLRGTVVYYDGQMNDSRLNVALAC 242

Query: 241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300
           TAALAGAAVLNHAEV+SL+ DE SN+IIGARIR+NLSGKEFDTYAKVVVNAAGPFCDSVR
Sbjct: 243 TAALAGAAVLNHAEVVSLLMDEVSNQIIGARIRDNLSGKEFDTYAKVVVNAAGPFCDSVR 302

Query: 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSD 360
           K+AD+  QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS+
Sbjct: 303 KMADKESQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSN 362

Query: 361 TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDH 420
           T IT+LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLA+DP AK+TESISRDH
Sbjct: 363 TSITMLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAVDPKAKSTESISRDH 422

Query: 421 VVCEDFPGLVTITGGKWTTYR 441
           VVCED PGLVTITGGKWTTYR
Sbjct: 423 VVCEDHPGLVTITGGKWTTYR 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109816|ref|XP_002315321.1| predicted protein [Populus trichocarpa] gi|222864361|gb|EEF01492.1| predicted protein [Populus trichocarpa]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/447 (82%), Positives = 394/447 (88%), Gaps = 10/447 (2%)

Query: 2   SATRIRRF-----GAVLAAAAGGTSILLFTRPSIAGNDRGPSPDL--VRSQINDSKAVVP 54
           SA R+RR           A+ GG+ IL    P+++ NDRG    L  VRS+IND  A VP
Sbjct: 3   SAARLRRVCAAALATATVASVGGSIIL---SPNLSSNDRGSGTVLEAVRSKINDPYANVP 59

Query: 55  SRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRST 114
           SR VQESALI A+ +NPLDILV+GGGATGCGVA DA TRGLRVGLVEREDFSSGTSSRST
Sbjct: 60  SRAVQESALIGASQANPLDILVVGGGATGCGVAFDAVTRGLRVGLVEREDFSSGTSSRST 119

Query: 115 KLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVY 174
           KLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVI NAPHL +ALPCMTPCFDWFEVVY
Sbjct: 120 KLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIENAPHLCHALPCMTPCFDWFEVVY 179

Query: 175 YWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRL 234
           YW GLKMYDLVAG  LLH SRYYSA+ES ELFPTLA K  DR+L+G VVYYDGQMNDSR+
Sbjct: 180 YWAGLKMYDLVAGARLLHFSRYYSAKESIELFPTLAKKGNDRNLRGTVVYYDGQMNDSRV 239

Query: 235 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294
           NVGLA +AALAGAAVLNHAEVIS +KDEA+ RIIGARIR+N SGKEF+TYAKVVVNAAGP
Sbjct: 240 NVGLACSAALAGAAVLNHAEVISFLKDEATGRIIGARIRDNFSGKEFETYAKVVVNAAGP 299

Query: 295 FCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVA 354
           FCDSVRKLAD+    MICPSSGVHIVLPDYYSP+GMGLIVPKTKDGRVVFMLPWLGRTVA
Sbjct: 300 FCDSVRKLADKEATSMICPSSGVHIVLPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVA 359

Query: 355 GTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTE 414
           GTTDS+TVIT LPEPHEDEIQFILDAISDYL+VKVRRTDVLSAWSGIRPLA+DPSAK+TE
Sbjct: 360 GTTDSNTVITPLPEPHEDEIQFILDAISDYLSVKVRRTDVLSAWSGIRPLAVDPSAKSTE 419

Query: 415 SISRDHVVCEDFPGLVTITGGKWTTYR 441
           SISRDHVVCED+PGLVTITGGKWTTYR
Sbjct: 420 SISRDHVVCEDYPGLVTITGGKWTTYR 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444901|ref|XP_004140212.1| PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial-like, partial [Cucumis sativus] gi|449490504|ref|XP_004158624.1| PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial-like, partial [Cucumis sativus]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/440 (82%), Positives = 391/440 (88%), Gaps = 5/440 (1%)

Query: 5   RIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSP---DLVRSQINDSKAVVPSRVVQES 61
           R+ +      A A G SILL  +PS++ NDRG S    D  R++IND  AVVP R VQES
Sbjct: 21  RLSKLAVAAVATAVGGSILL--QPSLSSNDRGTSGHALDSYRNKINDPTAVVPPRSVQES 78

Query: 62  ALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV 121
           ALI A+  NPLDILV+GGGATGCGVALDA TRGLRVGLVEREDFSSGTSSRSTKLIHGGV
Sbjct: 79  ALIGASPVNPLDILVVGGGATGCGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLIHGGV 138

Query: 122 RYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKM 181
           RYLEKAVFNLDY QLKLVFHALEERKQ I NAPHL +ALPCMTPCFDWFEV+YYW+GLKM
Sbjct: 139 RYLEKAVFNLDYKQLKLVFHALEERKQFIENAPHLCHALPCMTPCFDWFEVIYYWIGLKM 198

Query: 182 YDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALT 241
           YDLVAGR LLHLSRYYSAQES ELFPTLA     RSLKG VVYYDGQMNDSR+NVGLA T
Sbjct: 199 YDLVAGRRLLHLSRYYSAQESVELFPTLARNGGGRSLKGTVVYYDGQMNDSRVNVGLACT 258

Query: 242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 301
           AALAGAAVLNHAEV+  +KD+AS+RIIGARIR+ LSG+EFDTYAKV+VNAAGPFCDSVRK
Sbjct: 259 AALAGAAVLNHAEVVGFLKDDASDRIIGARIRDKLSGREFDTYAKVIVNAAGPFCDSVRK 318

Query: 302 LADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDT 361
           +AD+    MICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS+T
Sbjct: 319 MADKEAVSMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSNT 378

Query: 362 VITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHV 421
            IT+LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLA+DPSA+NTESISRDHV
Sbjct: 379 GITMLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAIDPSAQNTESISRDHV 438

Query: 422 VCEDFPGLVTITGGKWTTYR 441
           VCED+PGLVTITGGKWTTYR
Sbjct: 439 VCEDYPGLVTITGGKWTTYR 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865194|emb|CAN81960.1| hypothetical protein VITISV_023568 [Vitis vinifera]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/441 (83%), Positives = 389/441 (88%), Gaps = 12/441 (2%)

Query: 2   SATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRG-PSPDLVRSQINDSKAVVPSRVVQE 60
           ++TR+RR G V AA A    + L   P I+ +DRG PS D VR +I DS  VVPSR VQE
Sbjct: 4   TSTRLRRLGTVAAAVALSAGVTL-RDPXISSSDRGGPSLDAVRRKIADSNGVVPSRAVQE 62

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
           SALI ++  NPLDILV+GGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKL+HGG
Sbjct: 63  SALIGSSAVNPLDILVVGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLLHGG 122

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
           VRYLEKAVFNLDYGQLKLVFHALEERKQVI NAPHL  ALPCMTPCFDWFEVVYYW+GLK
Sbjct: 123 VRYLEKAVFNLDYGQLKLVFHALEERKQVIENAPHLCQALPCMTPCFDWFEVVYYWMGLK 182

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLAL 240
           +YDLVAG  LLHLSRYYSAQES ELFPTLA   KDRSL+G VVYYDGQMNDSRLNV LA 
Sbjct: 183 LYDLVAGSRLLHLSRYYSAQESVELFPTLARNGKDRSLRGTVVYYDGQMNDSRLNVALAC 242

Query: 241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300
           TAALAGAAVLNHAEV+SL+ DE SN+IIGARIR+NLSGKEFDTYAKVVVNAAGPFCDS  
Sbjct: 243 TAALAGAAVLNHAEVVSLLMDEVSNQIIGARIRDNLSGKEFDTYAKVVVNAAGPFCDS-- 300

Query: 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSD 360
                   PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS+
Sbjct: 301 --------PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSN 352

Query: 361 TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDH 420
           T IT+LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLA+DP AK+TESISRDH
Sbjct: 353 TSITMLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAVDPKAKSTESISRDH 412

Query: 421 VVCEDFPGLVTITGGKWTTYR 441
           VVCED PGLVTITGGKWTTYR
Sbjct: 413 VVCEDHPGLVTITGGKWTTYR 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228273|ref|NP_187648.1| glycerol-3-phosphate dehydrogenase SDP6 [Arabidopsis thaliana] gi|75266244|sp|Q9SS48.1|SDP6_ARATH RecName: Full=Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial; AltName: Full=Protein SUGAR-DEPENDENT 6; Flags: Precursor gi|6056190|gb|AAF02807.1|AC009400_3 putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana] gi|17380778|gb|AAL36219.1| putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana] gi|20465281|gb|AAM20004.1| putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana] gi|332641376|gb|AEE74897.1| glycerol-3-phosphate dehydrogenase SDP6 [Arabidopsis thaliana]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/443 (80%), Positives = 393/443 (88%), Gaps = 2/443 (0%)

Query: 1   MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSP--DLVRSQINDSKAVVPSRVV 58
           MS   IRR  A  A  A  +   ++  PS+A +D+G  P  D +R ++ D  A VPSR  
Sbjct: 1   MSLASIRRLAAGAAVIAAASGGAVYLSPSVASSDKGGGPILDSLRRRLGDPTASVPSRSA 60

Query: 59  QESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118
           QESALIAA  S+PLD+LVIGGGATG GVALDA TRGLRVGLVEREDFSSGTSSRSTKLIH
Sbjct: 61  QESALIAATASDPLDVLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLIH 120

Query: 119 GGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVG 178
           GGVRYLEKAVFNLDYGQLKLVFHALEERKQ+I NAPHL +ALPCMTPCFDWFEV+Y+W+G
Sbjct: 121 GGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFEVIYFWMG 180

Query: 179 LKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGL 238
           LKMYDLVAG  LLHLSRYYSA+ES ELFPTLA K KD++L+G VVYYDGQMNDSRLNVGL
Sbjct: 181 LKMYDLVAGPRLLHLSRYYSAKESIELFPTLARKGKDKNLRGTVVYYDGQMNDSRLNVGL 240

Query: 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298
           A TAALAGAAVLNHAEV+SLI D+A+ RIIGARIRNNL+G+EF++YAKVVVNAAGPFCDS
Sbjct: 241 ACTAALAGAAVLNHAEVVSLITDDATKRIIGARIRNNLTGQEFNSYAKVVVNAAGPFCDS 300

Query: 299 VRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 358
           +RK+ D++ +PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD
Sbjct: 301 IRKMIDEDTKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 360

Query: 359 SDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISR 418
           S+T IT LPEPHEDEIQFILDAISDYLN+KVRRTDVLSAWSGIRPLAMDP+AK+TESISR
Sbjct: 361 SNTSITSLPEPHEDEIQFILDAISDYLNIKVRRTDVLSAWSGIRPLAMDPTAKSTESISR 420

Query: 419 DHVVCEDFPGLVTITGGKWTTYR 441
           DHVV E+ PGLVTITGGKWTTYR
Sbjct: 421 DHVVFEENPGLVTITGGKWTTYR 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577446|ref|XP_002529602.1| glycerol-3-phosphate dehydrogenase, putative [Ricinus communis] gi|223530935|gb|EEF32794.1| glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/444 (83%), Positives = 398/444 (89%), Gaps = 7/444 (1%)

Query: 2   SATRIRRFG--AVLAAAAGGTSILLFTRPSIAGNDRG--PSPDLVRSQINDSKAVVPSRV 57
           SA R RR G  A+++A +GG  +L    P+I+ +DRG  P+ D VR +IND  AVVPSR 
Sbjct: 6   SAIRFRRLGTAAIISAVSGGAILL---SPNISSSDRGGGPALDAVRQRINDFNAVVPSRA 62

Query: 58  VQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117
            QESALIAA  +NPLD+LVIGGGATG G ALDA TRGLRVGLVEREDFSSGTSSRSTKLI
Sbjct: 63  AQESALIAAGANNPLDVLVIGGGATGSGAALDAVTRGLRVGLVEREDFSSGTSSRSTKLI 122

Query: 118 HGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWV 177
           HGGVRYLEKAVFNLDYGQLKLVFHALEERKQVI NAPH+ +ALPCMTPCF WFE +YYW+
Sbjct: 123 HGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIDNAPHMCHALPCMTPCFSWFETLYYWM 182

Query: 178 GLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVG 237
           GLKMYDLVAG  LLHLSRYYSA+ES ELFPTLA K KDRSL G VVYYDGQMNDSR+NV 
Sbjct: 183 GLKMYDLVAGPRLLHLSRYYSARESLELFPTLAKKGKDRSLWGTVVYYDGQMNDSRVNVS 242

Query: 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297
           LA TAALAGAAVLNHAEV+SL+KDEA   IIGARIR+NLSGKEFDTYAKVVVNAAGPFCD
Sbjct: 243 LACTAALAGAAVLNHAEVLSLLKDEAHGHIIGARIRDNLSGKEFDTYAKVVVNAAGPFCD 302

Query: 298 SVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTT 357
           SVRK+ +++VQPMI PSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTT
Sbjct: 303 SVRKMVNKDVQPMIAPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTT 362

Query: 358 DSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESIS 417
           DS+TVIT LPEPHEDEIQFILDAISDYL+VKVRRTDVLSAWSGIRPLA+DPSAKNTESIS
Sbjct: 363 DSNTVITALPEPHEDEIQFILDAISDYLSVKVRRTDVLSAWSGIRPLAVDPSAKNTESIS 422

Query: 418 RDHVVCEDFPGLVTITGGKWTTYR 441
           RDHVVCED+PGLVTITGGKWTTYR
Sbjct: 423 RDHVVCEDYPGLVTITGGKWTTYR 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172054|gb|AEL98731.1| glycerol-3-phosphate dehydrogenase, partial [Silene latifolia]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/442 (78%), Positives = 389/442 (88%), Gaps = 6/442 (1%)

Query: 2   SATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDL--VRSQINDSKAVVPSRVVQ 59
           +A R+RR G   AA A   SI L    S++ N+R P+ +   ++ +I D KAVVP R   
Sbjct: 4   AALRLRRIGITAAAVATAASISLTY--SVSSNER-PAAEAGSIQKRIADPKAVVPPRKAH 60

Query: 60  ESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG 119
            S+LI++   NPLD+L++GGGATGCGVALDA TRGLRVGLVEREDFSSGTSSRSTKL+HG
Sbjct: 61  TSSLISSTKDNPLDLLIVGGGATGCGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLVHG 120

Query: 120 GVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGL 179
           GVRYLEKAVFN+DYGQLKLVFHAL+ERKQVI NAPHL ++LPCMTPCF+WFEVVYYW GL
Sbjct: 121 GVRYLEKAVFNVDYGQLKLVFHALKERKQVIDNAPHLCHSLPCMTPCFEWFEVVYYWAGL 180

Query: 180 KMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLA 239
           K+YDLVAG  LLHLSRYYSAQES ELFPTL+   + +SLKG VVYYDGQMNDSRLNVGLA
Sbjct: 181 KLYDLVAGARLLHLSRYYSAQESIELFPTLSKTGQGKSLKGTVVYYDGQMNDSRLNVGLA 240

Query: 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299
            TAALAGA+VLN+AEV+SL+KDE + RIIGARI +NLSG++FDTYAKVVVNAAGPFCD V
Sbjct: 241 CTAALAGASVLNYAEVVSLLKDE-NGRIIGARIHDNLSGEKFDTYAKVVVNAAGPFCDFV 299

Query: 300 RKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS 359
           RKLAD+    MICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRT+AGTTDS
Sbjct: 300 RKLADKTTPAMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTLAGTTDS 359

Query: 360 DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRD 419
           +T++T+LPEPHEDEIQFIL+AISDYLNVKVRRTDVLSAWSGIRPLAMDP AKNTESISRD
Sbjct: 360 NTILTMLPEPHEDEIQFILEAISDYLNVKVRRTDVLSAWSGIRPLAMDPRAKNTESISRD 419

Query: 420 HVVCEDFPGLVTITGGKWTTYR 441
           HVVCEDFPGLVTITGGKWTTYR
Sbjct: 420 HVVCEDFPGLVTITGGKWTTYR 441

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500417|ref|XP_003519028.1| PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial-like [Glycine max]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/442 (81%), Positives = 392/442 (88%), Gaps = 4/442 (0%)

Query: 4   TRIRRFGAVLAAAAG---GTSILLFTRPSIAGNDRGPSP-DLVRSQINDSKAVVPSRVVQ 59
           TR+RR GA + AA     G +IL+ T  S + +  G S    VR +I+D  AVVP+R VQ
Sbjct: 2   TRLRRLGAAVGAAMATAYGGAILVSTPVSASDHSVGGSHLAAVREKIHDPFAVVPAREVQ 61

Query: 60  ESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG 119
            SAL  A+ +NPLD+LVIGGGATG GVALDA TRGLRVGLVEREDFSSGTSSRSTKLIHG
Sbjct: 62  RSALTGASAANPLDMLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLIHG 121

Query: 120 GVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGL 179
           GVRYLEKAVF LDYGQLKLVFHALEERKQ+I NAPHL +ALPCMTPCFDWFEVVYYW+GL
Sbjct: 122 GVRYLEKAVFKLDYGQLKLVFHALEERKQLIDNAPHLCHALPCMTPCFDWFEVVYYWMGL 181

Query: 180 KMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLA 239
           KMYDLVAG  LLHLSRYYSA+ES ELFPTLA + K RSL+G VVYYDGQMNDSRLNVGLA
Sbjct: 182 KMYDLVAGARLLHLSRYYSAKESVELFPTLAKEGKGRSLRGTVVYYDGQMNDSRLNVGLA 241

Query: 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299
            TAALAGAAVLNHAEV+SL+KDEAS RIIGARIR+NL+GKEFDTYAKV+VNAAGPFCDSV
Sbjct: 242 CTAALAGAAVLNHAEVVSLLKDEASERIIGARIRDNLTGKEFDTYAKVIVNAAGPFCDSV 301

Query: 300 RKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS 359
           RK+AD++ + MI PSSGVHI+LPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS
Sbjct: 302 RKMADKSARDMISPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS 361

Query: 360 DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRD 419
           +T IT LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDP+AKNTESISRD
Sbjct: 362 NTSITFLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPTAKNTESISRD 421

Query: 420 HVVCEDFPGLVTITGGKWTTYR 441
           HVV ED PGLVTITGGKWTTYR
Sbjct: 422 HVVFEDHPGLVTITGGKWTTYR 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172056|gb|AEL98732.1| glycerol-3-phosphate dehydrogenase, partial [Silene latifolia]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/442 (78%), Positives = 389/442 (88%), Gaps = 6/442 (1%)

Query: 2   SATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDL--VRSQINDSKAVVPSRVVQ 59
           +A R+RR G   AA A   SI L    S++ N+R P+ +   ++ +I D KAVVP R   
Sbjct: 4   AALRLRRIGITAAAVATAASISLTY--SVSSNER-PAAEAGSIQKRIADPKAVVPPRKAH 60

Query: 60  ESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG 119
            S+LI++   NPLD+L++GGGATGCGVALDA TRGLRVGLVEREDFSSGTSSRSTKL+HG
Sbjct: 61  TSSLISSTKDNPLDLLIVGGGATGCGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLVHG 120

Query: 120 GVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGL 179
           GVRYLEKAVFN+DYGQLKLVFHAL+ERKQVI NAPHL ++LPCMTPCF+WFEVVYYW GL
Sbjct: 121 GVRYLEKAVFNVDYGQLKLVFHALKERKQVIDNAPHLCHSLPCMTPCFEWFEVVYYWAGL 180

Query: 180 KMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLA 239
           K+YDLVAG  LLHLSRYYSAQES ELFPTL+   +++SLKG VVY+DGQMNDSRLNVGLA
Sbjct: 181 KLYDLVAGPRLLHLSRYYSAQESIELFPTLSRTGQEKSLKGTVVYHDGQMNDSRLNVGLA 240

Query: 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299
            TAALAGA+VLN+AEV+SL+KDE + RIIGARI +NLSG+EFDT AKVVVNAAGPFCD V
Sbjct: 241 CTAALAGASVLNYAEVVSLLKDE-NGRIIGARIHDNLSGEEFDTCAKVVVNAAGPFCDFV 299

Query: 300 RKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS 359
           RKLAD+    MICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRT+AGTTDS
Sbjct: 300 RKLADKTTPAMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTLAGTTDS 359

Query: 360 DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRD 419
           +T++T+LPEPHEDEIQFIL+AISDYLNVKVRRTDVLSAWSGIRPLA+DP AKNTESISRD
Sbjct: 360 NTILTMLPEPHEDEIQFILEAISDYLNVKVRRTDVLSAWSGIRPLAIDPRAKNTESISRD 419

Query: 420 HVVCEDFPGLVTITGGKWTTYR 441
           HVVCEDFPGLVTITGGKWTTYR
Sbjct: 420 HVVCEDFPGLVTITGGKWTTYR 441

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2076314	629	SDP6 "SUGAR-DEPENDENT 6" [Arab	0.990	0.696	0.764	1e-180
RGD|2726	727	Gpd2 "glycerol-3-phosphate deh	0.861	0.524	0.555	1.1e-108
MGI|MGI:99778	727	Gpd2 "glycerol phosphate dehyd	0.861	0.524	0.553	1.9e-108
FB|FBgn0022160	724	Gpo-1 "Glycerophosphate oxidas	0.961	0.587	0.492	3.1e-106
UNIPROTKB|F1NCA2	726	GPD2 "Uncharacterized protein"	0.857	0.522	0.543	3.6e-105
UNIPROTKB|P43304	727	GPD2 "Glycerol-3-phosphate deh	0.861	0.524	0.540	5.8e-105
UNIPROTKB|A6QLU1	727	GPD2 "Glycerol-3-phosphate deh	0.861	0.524	0.530	4.1e-104
UNIPROTKB|F1RPU0	729	MGPD "Uncharacterized protein"	0.861	0.522	0.523	1.3e-102
ZFIN|ZDB-GENE-030131-4869	729	gpd2 "glycerol-3-phosphate deh	0.871	0.528	0.518	3.3e-102
UNIPROTKB|F1LNI0	727	Gpd2 "Glycerol-3-phosphate deh	0.861	0.524	0.515	2.4e-99

TAIR|locus:2076314 SDP6 "SUGAR-DEPENDENT 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1754 (622.5 bits), Expect = 1.0e-180, P = 1.0e-180
 Identities = 341/446 (76%), Positives = 379/446 (84%)

Query:     1 MSATRIRRFGA---VLAAAAGGTSILLFTRPSIAGNDRGPSP--DLVRSQINDSKAVVPS 55
             MS   IRR  A   V+AAA+GG    ++  PS+A +D+G  P  D +R ++ D  A VPS
Sbjct:     1 MSLASIRRLAAGAAVIAAASGGA---VYLSPSVASSDKGGGPILDSLRRRLGDPTASVPS 57

Query:    56 RVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTK 115
             R  QESALIAA  S+PLD+LVIGGGATG GVALDA TRGLRVGLVEREDFSSGTSSRSTK
Sbjct:    58 RSAQESALIAATASDPLDVLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTK 117

Query:   116 LIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYY 175
             LIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ+I NAPHL +ALPCMTPCFDWFEV+Y+
Sbjct:   118 LIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFEVIYF 177

Query:   176 WVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRXX 235
             W+GLKMYDLVAG  LLHLSRYYSA+ES ELFPTLA K KD++L+G VVYYDGQMNDSR  
Sbjct:   178 WMGLKMYDLVAGPRLLHLSRYYSAKESIELFPTLARKGKDKNLRGTVVYYDGQMNDSRLN 237

Query:   236 XXXXXXXXXXXXXXXXXXEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295
                               EV+SLI D+A+ RIIGARIRNNL+G+EF++YAKVVVNAAGPF
Sbjct:   238 VGLACTAALAGAAVLNHAEVVSLITDDATKRIIGARIRNNLTGQEFNSYAKVVVNAAGPF 297

Query:   296 CDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAG 355
             CDS+RK+ D++ +PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAG
Sbjct:   298 CDSIRKMIDEDTKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAG 357

Query:   356 TTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTES 415
             TTDS+T IT LPEPHEDEIQFILDAISDYLN+KVRRTDVLSAWSGIRPLAMDP+AK+TES
Sbjct:   358 TTDSNTSITSLPEPHEDEIQFILDAISDYLNIKVRRTDVLSAWSGIRPLAMDPTAKSTES 417

Query:   416 ISRDHVVCEDFPGLVTITGGKWTTYR 441
             ISRDHVV E+ PGLVTITGGKWTTYR
Sbjct:   418 ISRDHVVFEENPGLVTITGGKWTTYR 443

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=IEA;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006071 "glycerol metabolic process" evidence=ISS

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006127 "glycerophosphate shuttle" evidence=IMP;TAS

GO:0019563 "glycerol catabolic process" evidence=IMP;TAS

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

RGD|2726 Gpd2 "glycerol-3-phosphate dehydrogenase 2, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 219/394 (55%), Positives = 269/394 (68%)

Query:    54 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
             PSR   E+ L+   N++  DILVIGGGATGCG ALDA TRGL+  LVER DF+SGTSSRS
Sbjct:    55 PSR---EAQLMTLQNTSEFDILVIGGGATGCGCALDAVTRGLKTALVERNDFASGTSSRS 111

Query:   114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
             TKLIHGGVRYL+KA+ NLD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct:   112 TKLIHGGVRYLQKAITNLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLP 171

Query:   174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
             YYWVG+KMYDLVAG H L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct:   172 YYWVGIKMYDLVAGSHCLKSSYVLSKSRALEHFPMLQ---KDK-LVGAIVYYDGQHNDAR 227

Query:   234 XXXXXXXXXXXXXXXXXXXXEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
                                 EV+SL+K    +    R+ GAR ++ L+G EF+  AK V+
Sbjct:   228 MNLAIALTAARYGAATANYMEVVSLLKKTDPETGKERVSGARCKDVLTGHEFNVRAKCVI 287

Query:   290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
             NA GPF DSVRK+ D +V P+  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct:   288 NATGPFTDSVRKMDDNDVVPICQPSAGVHIVMPGYYSPENMGLLDPATSDGRVIFFLPWE 347

Query:   350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSGIRPLAMD 407
               T+AGTTDS T +T  P P ED+I FIL+ + +YL+  V+VRR DVL+AWSGIRPL  D
Sbjct:   348 KMTIAGTTDSPTDVTHHPIPSEDDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query:   408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
             P + NT+SISR+HVV     GL+TI GGKWTTYR
Sbjct:   408 PKSANTQSISRNHVVEVSDSGLITIAGGKWTTYR 441

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISO;IDA

GO:0006094 "gluconeogenesis" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0052591 "sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity" evidence=IEA

MGI|MGI:99778 Gpd2 "glycerol phosphate dehydrogenase 2, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 218/394 (55%), Positives = 271/394 (68%)

Query:    54 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
             PSR   E+ L+   N+   DILVIGGGATGCG ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct:    55 PSR---EAQLMTLKNTPEFDILVIGGGATGCGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query:   114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
             TKLIHGGVRYL+KA+ NLD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct:   112 TKLIHGGVRYLQKAIMNLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLP 171

Query:   174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
             YYWVG+KMYDLVAG   L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct:   172 YYWVGIKMYDLVAGSQCLKSSYVLSKSRALEHFPMLQ---KDK-LVGAIVYYDGQHNDAR 227

Query:   234 XXXXXXXXXXXXXXXXXXXXEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
                                 EV+SL+K    +    R+ GAR ++ L+G+EFD  AK V+
Sbjct:   228 MNLAIALTAARYGAATANYMEVVSLLKKTDPETGKERVSGARCKDVLTGQEFDVRAKCVI 287

Query:   290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
             NA+GPF DSVRK+ D+NV P+  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct:   288 NASGPFTDSVRKMDDKNVVPICQPSAGVHIVMPGYYSPENMGLLDPATSDGRVIFFLPWE 347

Query:   350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSGIRPLAMD 407
               T+AGTTD+ T +T  P P E++I FIL+ + +YL+  V+VRR DVL+AWSGIRPL  D
Sbjct:   348 KMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSSDVEVRRGDVLAAWSGIRPLVTD 407

Query:   408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
             P + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct:   408 PKSADTQSISRNHVVDISDSGLITIAGGKWTTYR 441

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISO;IMP

GO:0006094 "gluconeogenesis" evidence=IMP

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052590 "sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity" evidence=IEA

GO:0052591 "sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

FB|FBgn0022160 Gpo-1 "Glycerophosphate oxidase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 219/445 (49%), Positives = 293/445 (65%)

Query:     4 TRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQI--NDSKAVVPSRVVQES 61
             +R+ +FG   A+A  G+ +  +T       DR  +P +V +       K  +P R  Q  
Sbjct:     3 SRMFKFGVTAASACVGSVLASYTL------DRWNTPHVVNNATVPPKRKRTLPPRADQIK 56

Query:    62 ALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV 121
             +L++       D+L+IGGGATG G ALD+ TRGL+  LVE +DF+SGTSSRSTKLIHGGV
Sbjct:    57 SLMSGEE---FDVLIIGGGATGAGCALDSVTRGLKTALVELDDFASGTSSRSTKLIHGGV 113

Query:   122 RYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKM 181
             RYL+KA+  LD  Q ++V  AL ER  ++ +APHL++ LP M P + W++V YYWVG+K 
Sbjct:   114 RYLQKAILGLDLEQYRMVKEALAERATMLESAPHLTHPLPIMLPVYTWWQVPYYWVGIKA 173

Query:   182 YDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRXXXXXXXX 241
             YDLVAG   +  S Y S +++ ELFP L    KD+ L GA+VYYDGQ +D+R        
Sbjct:   174 YDLVAGDRNVKSSYYLSKKDALELFPMLK---KDK-LCGAIVYYDGQQDDARMCLAVALT 229

Query:   242 XXXXXXXXXXXXEVISLIK-DEASNR--IIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298
                         EV  L+K D+ + +  + GA++++++SGKEF   AK +VNAAGPF DS
Sbjct:   230 AARHGATVCNHVEVKELLKKDDGTGKQVLCGAKVKDHISGKEFTVKAKCIVNAAGPFTDS 289

Query:   299 VRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 358
             +RK+ +  V+ + CPSSGVHIVLP YYSP+ MGL+ P T DGRV+F LPW  +T+AGTTD
Sbjct:   290 IRKMDNPTVKSICCPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWQRQTIAGTTD 349

Query:   359 SDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSGIRPLAMDPSAKNTESI 416
                 IT  P P EDEIQFIL+ I +YLN  V+VRR DVLSAWSGIRPL  DP+  +T+S+
Sbjct:   350 LPCEITHNPTPTEDEIQFILNEIKNYLNADVEVRRGDVLSAWSGIRPLVSDPNKDDTQSL 409

Query:   417 SRDHVVCEDFPGLVTITGGKWTTYR 441
             +R+H+V      L+TI GGKWTTYR
Sbjct:   410 ARNHIVHVSPSNLITIAGGKWTTYR 434

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IC;ISS;IDA

GO:0007629 "flight behavior" evidence=IMP

GO:0006127 "glycerophosphate shuttle" evidence=IMP

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=ISS;IMP

GO:0006071 "glycerol metabolic process" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NCA2 GPD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 217/399 (54%), Positives = 268/399 (67%)

Query:    54 PSRVVQESALIAANNSNP-LDILVIGGGATGCGVALDAATRG---LRVGLVEREDFSSGT 109
             P+R  Q S L     S P  D+L+IGGGATGCG ALDA TRG   L+  L+ER+DFSSGT
Sbjct:    51 PTREEQISTL----KSTPEFDVLIIGGGATGCGCALDAVTRGNTGLKTALLERDDFSSGT 106

Query:   110 SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDW 169
             SSRSTKLIHGGVRYL+KA+  LD+ Q K+V  AL+ER  ++  APHLS  LP M P + W
Sbjct:   107 SSRSTKLIHGGVRYLQKAIMKLDFEQYKMVKEALQERANLLEIAPHLSAPLPIMLPVYKW 166

Query:   170 FEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229
             +++ YYW+G+K+YDLVAG   L  S   S   + E FP L    KD+ L GA+VYYDGQ 
Sbjct:   167 WQLPYYWIGIKLYDLVAGSQCLKRSYVLSKSRALEHFPMLR---KDK-LVGAIVYYDGQH 222

Query:   230 NDSRXXXXXXXXXXXXXXXXXXXXEVISLIK----DEASNRIIGARIRNNLSGKEFDTYA 285
             ND+R                    EV+ L+K         R+ GAR R+ L+G+EFD  A
Sbjct:   223 NDARMNLAIALTAARYGAATANYTEVLRLLKRTEPGSGKQRVCGARCRDVLTGQEFDVKA 282

Query:   286 KVVVNAAGPFCDSVRKLADQNVQPMIC-PSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVF 344
             K V+NA GPF DSVRK+ DQ V P IC PS+GVHIV+P YYSP+ MGL+ P T DGRV+F
Sbjct:   283 KCVINATGPFTDSVRKMDDQEV-PNICQPSAGVHIVMPGYYSPDNMGLLDPATSDGRVIF 341

Query:   345 MLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNV--KVRRTDVLSAWSGIR 402
              LPW   T+AGTTDS T +T  P P E++I FIL  + +YL+V  +VRR DVL+AWSGIR
Sbjct:   342 FLPWEKMTIAGTTDSPTDVTSHPIPTEEDINFILSEVRNYLSVDVEVRRGDVLAAWSGIR 401

Query:   403 PLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
             PL  DP++K+T+SI R+HVV     GLVTI GGKWTTYR
Sbjct:   402 PLVTDPNSKDTQSICRNHVVAVSDSGLVTIAGGKWTTYR 440

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

UNIPROTKB|P43304 GPD2 "Glycerol-3-phosphate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 213/394 (54%), Positives = 269/394 (68%)

Query:    54 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
             PSR   E+ L+   N++  DILVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct:    55 PSR---EAQLLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query:   114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
             TKLIHGGVRYL+KA+  LD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct:   112 TKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPVYKWWQLP 171

Query:   174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
             YYWVG+K+YDLVAG + L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct:   172 YYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPMLQ---KDK-LVGAIVYYDGQHNDAR 227

Query:   234 XXXXXXXXXXXXXXXXXXXXEVISLIK--DEASN--RIIGARIRNNLSGKEFDTYAKVVV 289
                                 EV+SL+K  D  +   R+ GAR ++ L+G+EFD  AK V+
Sbjct:   228 MNLAIALTAARYGAATANYMEVVSLLKKTDPQTGKVRVSGARCKDVLTGQEFDVRAKCVI 287

Query:   290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
             NA GPF DSVRK+ D++   +  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct:   288 NATGPFTDSVRKMDDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQ 347

Query:   350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSGIRPLAMD 407
               T+AGTTD+ T +T  P P E++I FIL+ + +YL+  V+VRR DVL+AWSGIRPL  D
Sbjct:   348 KMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query:   408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
             P + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct:   408 PKSADTQSISRNHVVDISESGLITIAGGKWTTYR 441

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0052591 "sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A6QLU1 GPD2 "Glycerol-3-phosphate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 209/394 (53%), Positives = 267/394 (67%)

Query:    54 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
             PSR   E+ ++   N++  D+LVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRS
Sbjct:    55 PSR---EAQILTLKNTSEFDVLVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRS 111

Query:   114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
             TKLIHGGVRYL+KA+  LD  Q ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct:   112 TKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPIYKWWQLP 171

Query:   174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
             YYWVG+K+YDLVAG + L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct:   172 YYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPMLQ---KDK-LVGAIVYYDGQHNDAR 227

Query:   234 XXXXXXXXXXXXXXXXXXXXEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
                                 EV+SL+K         R+ GAR ++ L+G+EFD  AK V+
Sbjct:   228 MNLAIALTAARYGAATANYMEVMSLLKKTDPQTGKERVSGARCKDVLTGEEFDVRAKCVI 287

Query:   290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
             NA GPF D+VRK+ D++   +  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct:   288 NATGPFTDTVRKMDDKDTTAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQ 347

Query:   350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSGIRPLAMD 407
               T+AGTTD+ T +T  P P E++I FIL+ + +YL+  V+VRR DVL+AWSGIRPL  D
Sbjct:   348 KMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query:   408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
             P + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct:   408 PKSADTKSISRNHVVDISESGLITIAGGKWTTYR 441

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0052591 "sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1RPU0 MGPD "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 208/397 (52%), Positives = 266/397 (67%)

Query:    54 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRG---LRVGLVEREDFSSGTS 110
             PSR   E+ ++   N+   D+LVIGGGATG G ALDA TRG   L+  LVER+DFSSGTS
Sbjct:    55 PSR---EAQILTLKNTTEFDVLVIGGGATGSGCALDAVTRGYTGLKTALVERDDFSSGTS 111

Query:   111 SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWF 170
             SRSTKLIHGGVRYL+KA+  LD  Q ++V  AL ER  ++  APHLS  LP M P + W+
Sbjct:   112 SRSTKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPIYKWW 171

Query:   171 EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230
             ++ YYWVG+K+YDLVAG + L  S   S   + E FP L    KD+ L GA+VYYDGQ N
Sbjct:   172 QLPYYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPMLQ---KDK-LVGAIVYYDGQHN 227

Query:   231 DSRXXXXXXXXXXXXXXXXXXXXEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAK 286
             D+R                    EV+SL+K         R+ GAR ++ L+G+EFD  AK
Sbjct:   228 DARMNLAIALTAARYGAATANYMEVVSLLKKTDPQTGKERVSGARCKDVLTGQEFDVRAK 287

Query:   287 VVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFML 346
              V+NA GPF D+VR++ D++   +  PS+GVHIV+P YYSPE MGL+ P T DGRV+F L
Sbjct:   288 CVINATGPFTDTVRRMDDKDATAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFL 347

Query:   347 PWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSGIRPL 404
             PW   T+AGTTD+ T +T  P P E++I FIL+ + +YL+  V+VRR DVL+AWSGIRPL
Sbjct:   348 PWQKMTIAGTTDTPTDVTNHPIPSEEDINFILNEVRNYLSSDVEVRRGDVLAAWSGIRPL 407

Query:   405 AMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
               DP + +T+SISR+HVV     GL+TI GGKWTTYR
Sbjct:   408 VTDPKSADTQSISRNHVVDISESGLITIAGGKWTTYR 444

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-4869 gpd2 "glycerol-3-phosphate dehydrogenase 2 (mitochondrial)" [Danio rerio (taxid:7955)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 208/401 (51%), Positives = 262/401 (65%)

Query:    50 KAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109
             K  +P+R  Q S L    N+   D+LV+GGGATG G ALDA TR L+  LVER DFSSGT
Sbjct:    50 KDALPTREEQLSTL---RNTEEFDVLVVGGGATGSGCALDAVTRNLKTALVERSDFSSGT 106

Query:   110 SSRSTKLIHGGVRYLEKAVFNLDY---GQLKLVFHALEERKQVIRNAPHLSNALPCMTPC 166
             SSRSTKLIHGGVRYL+KA+  LDY    Q  +V  AL ER  ++  APHLS  LP M P 
Sbjct:   107 SSRSTKLIHGGVRYLQKAIMKLDYEQHSQYMMVKEALHERANLLEIAPHLSAPLPIMLPV 166

Query:   167 FDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226
             + W+++ YYW G+KMYDLVAG   L  S   S  ++ E FP L    KD+ L GA+VYYD
Sbjct:   167 YKWWQLPYYWAGIKMYDLVAGSQCLKSSYVLSKSKALEFFPMLK---KDK-LVGAIVYYD 222

Query:   227 GQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDE----ASNRIIGARIRNNLSGKEFD 282
             GQ ND+R                    EV+ L+K         ++ GAR R+ ++G+EFD
Sbjct:   223 GQHNDARMNLAIALTAARHGAAIANYTEVVHLLKKPDPKTGQEKVCGARCRDVVTGQEFD 282

Query:   283 TYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRV 342
               AK V+NA GPF DS+RK+ +Q    +  PS+GVHIV+P YYSP+ MGL+ P T DGRV
Sbjct:   283 IRAKCVINATGPFTDSLRKMDNQKTANICQPSAGVHIVIPGYYSPDNMGLLDPATSDGRV 342

Query:   343 VFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSG 400
             +F LPW   T+AGTTD+ T +T  P P ED+I FIL  + +YL+  V+VRR DVL+AWSG
Sbjct:   343 IFFLPWEKMTIAGTTDTPTEVTAHPIPMEDDINFILSEVRNYLSPDVEVRRGDVLAAWSG 402

Query:   401 IRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
             IRPL  DPS+K+T+SI R+H+V     GL+TI GGKWTTYR
Sbjct:   403 IRPLVTDPSSKDTQSICRNHIVNVSDSGLITIAGGKWTTYR 443

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

UNIPROTKB|F1LNI0 Gpd2 "Glycerol-3-phosphate dehydrogenase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
 Identities = 203/394 (51%), Positives = 258/394 (65%)

Query:    54 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
             PSR   E+ L+   N++  DILVIGGGATGCG ALDA TRG R  L+E+ +F+S T   S
Sbjct:    55 PSR---EAQLMTLQNTSEFDILVIGGGATGCGCALDAVTRGERTILLEKNNFASSTLRIS 111

Query:   114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVV 173
               LIHGG++Y++  + NL     ++V  AL ER  ++  APHLS  LP M P + W+++ 
Sbjct:   112 EHLIHGGLKYIQMPLVNLSIETYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLP 171

Query:   174 YYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSR 233
             YYWVG+KMYDLVAG H L  S   S   + E FP L    KD+ L GA+VYYDGQ ND+R
Sbjct:   172 YYWVGIKMYDLVAGSHCLKSSYVLSKSRALEHFPMLQ---KDK-LVGAIVYYDGQHNDAR 227

Query:   234 XXXXXXXXXXXXXXXXXXXXEVISLIK----DEASNRIIGARIRNNLSGKEFDTYAKVVV 289
                                 EV+SL+K    +    R+ GAR ++ L+G EF+  AK V+
Sbjct:   228 MNLAIALTAARYGAATANYMEVVSLLKKTDPETGKERVSGARCKDVLTGHEFNVRAKCVI 287

Query:   290 NAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349
             NA GPF DSVRK+ D +V P+  PS+GVHIV+P YYSPE MGL+ P T DGRV+F LPW 
Sbjct:   288 NATGPFTDSVRKMDDNDVVPICQPSAGVHIVMPGYYSPENMGLLDPATSDGRVIFFLPWE 347

Query:   350 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSGIRPLAMD 407
               T+AGTTDS T +T  P P ED+I FIL+ + +YL+  V+VRR DVL+AWSGIRPL  D
Sbjct:   348 KMTIAGTTDSPTDVTHHPIPSEDDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTD 407

Query:   408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441
             P + NT+SISR+HVV     GL+TI GGKWTTYR
Sbjct:   408 PKSANTQSISRNHVVEVSDSGLITIAGGKWTTYR 441

GO:0004368 "glycerol-3-phosphate dehydrogenase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SS48	SDP6_ARATH	1, ., 1, ., 5, ., 3	0.8036	0.9977	0.7011	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.5.3	0.946
3rd Layer	1.1.5	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
PLN02464	627	PLN02464, PLN02464, glycerol-3-phosphate dehydroge	0.0
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	1e-126
PRK12266	508	PRK12266, glpD, glycerol-3-phosphate dehydrogenase	2e-73
PRK13369	502	PRK13369, PRK13369, glycerol-3-phosphate dehydroge	9e-62
PRK11101	546	PRK11101, glpA, sn-glycerol-3-phosphate dehydrogen	2e-35
TIGR03377	516	TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate d	3e-35
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-28
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	9e-14
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	5e-11
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	8e-06
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	3e-05
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	2e-04
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	2e-04
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	2e-04
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	4e-04
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	4e-04
PRK07121	492	PRK07121, PRK07121, hypothetical protein; Validate	0.001
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	0.001
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.001
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.001
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	0.001
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.002
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.003
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	0.003
PRK06854	608	PRK06854, PRK06854, adenylylsulfate reductase subu	0.003
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	0.004
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	0.004

>gnl|CDD|215257 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase

 Score =  827 bits (2139), Expect = 0.0
 Identities = 353/442 (79%), Positives = 384/442 (86%)

Query: 1   MSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQINDSKAVVPSRVVQE 60
           MS  R+RR  A  AA A G ++ L  +P+ +    GP+ D +R +I D  A VPSR  QE
Sbjct: 1   MSLARLRRLAAGAAATAAGGAVYLSPQPASSDKGGGPALDSLRDRIADPNASVPSRSAQE 60

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
           SALI A  + PLD+LV+GGGATG GVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG
Sbjct: 61  SALIGATAAEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
           VRYLEKAVF LDYGQLKLVFHALEERKQ+I NAPHL +ALP MTPC+DWFEV YYW GLK
Sbjct: 121 VRYLEKAVFQLDYGQLKLVFHALEERKQLIENAPHLCHALPIMTPCYDWFEVPYYWAGLK 180

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLAL 240
            YDLVAG  LLHLSRYYSA+ES ELFPTLA K KD SLKG VVYYDGQMNDSRLNV LA 
Sbjct: 181 AYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMNDSRLNVALAC 240

Query: 241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300
           TAALAGAAVLN+AEV+SLIKDE++ RI+GAR+R+NL+GKEFD YAKVVVNAAGPFCD VR
Sbjct: 241 TAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVR 300

Query: 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSD 360
           K+AD   +PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS 
Sbjct: 301 KMADGKAKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSK 360

Query: 361 TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDH 420
           T IT+LPEPHEDEIQFILDAISDYLNVKVRR+DVLSAWSGIRPLA+DPSAK+TESISRDH
Sbjct: 361 TPITMLPEPHEDEIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDH 420

Query: 421 VVCEDFPGLVTITGGKWTTYRR 442
           VVCE+  GLVTITGGKWTTYR 
Sbjct: 421 VVCEEPDGLVTITGGKWTTYRS 442

Length = 627

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score =  377 bits (969), Expect = e-126
 Identities = 158/380 (41%), Positives = 223/380 (58%), Gaps = 27/380 (7%)

Query: 72  LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNL 131
            D++VIGGG TG G+A DAA RGL+V LVE+ D +SGTSSRSTKLIHGG+RYLE      
Sbjct: 13  FDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLE------ 66

Query: 132 DYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYW-VGLKMYDLVAG-RH 189
              +  LV  AL ER+ ++R APHL   LP + P        +    GL +YD +AG R 
Sbjct: 67  -QYEFSLVREALAEREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRK 125

Query: 190 LLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAV 249
           LL  SR    +E+  L P L    K   LKGA  Y DG ++D+RL    A  AA  GA +
Sbjct: 126 LLPASRVLDPKEALPLEPAL----KKDGLKGAFRYPDGVVDDARLVAANARDAAEHGAEI 181

Query: 250 LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD--QNV 307
           L +  V SL ++     + G  + +  +G+ ++  A+ VVNAAGP+ D + ++A   Q+ 
Sbjct: 182 LTYTRVESLRRE---GGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSP 238

Query: 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLP 367
              + PS G H+V+   + P    +I    KDGR+VF +P+ G+T+ GTT  DT     P
Sbjct: 239 HIGVRPSKGSHLVVDKKF-PINQAVINRCRKDGRIVFAIPYEGKTLIGTT--DTDYDGDP 295

Query: 368 E---PHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVC- 423
           E     E+EI ++LDA++ YL   + R D+LS ++G+RPL +D    +T +ISRDHV+  
Sbjct: 296 EDPRITEEEIDYLLDAVNRYLAPPLTREDILSTYAGVRPL-VDDGDDDTSAISRDHVLFD 354

Query: 424 -EDFPGLVTITGGKWTTYRR 442
             +  GL+T+ GGK TTYR+
Sbjct: 355 HAELAGLLTVAGGKLTTYRK 374

Length = 532

>gnl|CDD|237027 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed

 Score =  238 bits (611), Expect = 2e-73
 Identities = 128/417 (30%), Positives = 183/417 (43%), Gaps = 91/417 (21%)

Query: 66  ANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE 125
                  D+LVIGGG  G G+A DAA RGL V L E++D +S TSS STKLIHGG+RYLE
Sbjct: 1   MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLE 60

Query: 126 KAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNAL-------PCMTPCFDWFEVVYYW-- 176
                  + + +LV  AL ER+ ++R APH+   +       P + P          W  
Sbjct: 61  -------HYEFRLVREALAEREVLLRMAPHIIWPMRFVLPHRPHLRP---------AWMI 104

Query: 177 -VGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMK--AKDRSLKG----AVVYYDGQM 229
             GL +YD +  R  L  SR             L +        LK        Y D  +
Sbjct: 105 RAGLFLYDHLGKRKSLPGSR------------GLDLGRDPAGSPLKPEITRGFEYSDCWV 152

Query: 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVV 289
           +D+RL V  A  AA  GA +L    V+S       N +    + +  +GK +   A+ +V
Sbjct: 153 DDARLVVLNARDAAERGAEILTRTRVVSA---RRENGLWHVTLEDTATGKRYTVRARALV 209

Query: 290 NAAGPFCDSV-RKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK-----------T 337
           NAAGP+                I    G HIV             VP+            
Sbjct: 210 NAAGPWVKQFLDDGLGLPSPYGIRLVKGSHIV-------------VPRLFDHDQAYILQN 256

Query: 338 KDGRVVFMLPWLGR-TVAGTTD-------SDTVITLLPEPHEDEIQFILDAISDYLNVKV 389
            DGR+VF +P+    T+ GTTD       +   I+      E+EI ++   ++ Y   ++
Sbjct: 257 PDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAIS------EEEIDYLCKVVNRYFKKQL 310

Query: 390 RRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPG----LVTITGGKWTTYRR 442
              DV+  +SG+RPL  D S      I+RD+ +  D       L+++ GGK TTYR+
Sbjct: 311 TPADVVWTYSGVRPLCDDESDSAQA-ITRDYTLELDDENGGAPLLSVFGGKITTYRK 366

Length = 508

>gnl|CDD|237365 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase; Provisional

 Score =  207 bits (530), Expect = 9e-62
 Identities = 134/390 (34%), Positives = 197/390 (50%), Gaps = 44/390 (11%)

Query: 69  SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV 128
               D+ VIGGG  G G+A DAA RGL+V L E++D + GTSSRS KL+HGG+RYLE   
Sbjct: 4   PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLE--- 60

Query: 129 FNLDYGQLKLVFHALEERKQVIRNAPH----LSNALPCMTPCFDWFEVVYYWV---GLKM 181
               Y + +LV  AL ER+ ++  APH    +   LP         E    W+   GL +
Sbjct: 61  ----YYEFRLVREALIEREVLLAAAPHIIWPMRFVLPHSP------EDRPAWLVRLGLFL 110

Query: 182 YDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALT 241
           YD + GR  L  +R      + +L                  Y D  ++D+RL V  AL 
Sbjct: 111 YDHLGGRKRLPGTR------TLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALD 164

Query: 242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV-R 300
           AA  GA +L     +S  ++    R+     R+   G+     A+ +VNAAGP+   V  
Sbjct: 165 AAERGATILTRTRCVSARREGGLWRV---ETRDA-DGETRTVRARALVNAAGPWVTDVIH 220

Query: 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR-TVAGTTDS 359
           ++A  N    +    G HIV+P ++  +G    + +  D RV+F  P+ G  T+ GTTD 
Sbjct: 221 RVAGSNSSRNVRLVKGSHIVVPKFW--DGAQAYLFQNPDKRVIFANPYEGDFTLIGTTDI 278

Query: 360 DTVITLLPEP---HEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESI 416
                  PE     E+EI ++LDA + Y   K+RR DV+ ++SG+RPL  D  A N  ++
Sbjct: 279 A--YEGDPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGVRPLF-DDGAGNPSAV 335

Query: 417 SRDHVVCEDFPG----LVTITGGKWTTYRR 442
           +RD+V   D       L+++ GGK TT+R+
Sbjct: 336 TRDYVFDLDAETGGAPLLSVFGGKITTFRK 365

Length = 502

>gnl|CDD|236847 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

 Score =  137 bits (347), Expect = 2e-35
 Identities = 119/396 (30%), Positives = 185/396 (46%), Gaps = 73/396 (18%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D+++IGGGATG G+A D A RGLR  LVER D ++G + R+  L+H G RY   AV + +
Sbjct: 8   DVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARY---AVTDAE 64

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
             +       + E + + R A H      C+ P    F      + L   DL      + 
Sbjct: 65  SAR-----ECISENQILKRIARH------CVEPTDGLF------ITLPEDDLAFQATFIR 107

Query: 193 LSRYYSAQESAELFPTLAMK---AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAV 249
                +  E+  + P  A+    A + +L GAV   DG ++  RL     L A   GA +
Sbjct: 108 ACE-EAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQI 166

Query: 250 LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309
           L + EV  LI++   + + G R+R++L+G+  + +A VVVNAAG +   + + AD  ++ 
Sbjct: 167 LTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIR- 223

Query: 310 MICPSSGVHIVLPDY----------YSPEGMGLIVPKTKDGRVVFMLPWLGRTVA--GTT 357
           M  P+ G  +++ D+            P    ++VP              G T++  GTT
Sbjct: 224 MF-PAKGSLLIM-DHRINNHVINRCRKPADADILVP--------------GDTISLIGTT 267

Query: 358 ----DSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM---DPSA 410
               D D +        E +   IL    + L   + +T +L A++G+RPL     DPS 
Sbjct: 268 STRIDYDQIDDNRVTAEEVD---ILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSG 324

Query: 411 KNTESISR-----DHVVCEDFPGLVTITGGKWTTYR 441
           +N   +SR     DH   +   G +TITGGK  TYR
Sbjct: 325 RN---VSRGIVLLDHAERDGLDGFITITGGKLMTYR 357

Length = 546

>gnl|CDD|234191 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

 Score =  136 bits (344), Expect = 3e-35
 Identities = 99/364 (27%), Positives = 166/364 (45%), Gaps = 43/364 (11%)

Query: 89  DAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148
           D A RGLR  L+E+ D + GT+ R+  L+H G RY        D    +     +EE + 
Sbjct: 3   DLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVT-----DQESAR---ECIEENRI 54

Query: 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPT 208
           + R A H      C+      F      + L   DL   +  L   R  +   + E+ P 
Sbjct: 55  LKRIARH------CVEDTGGLF------ITLPEDDLEFQKQFLAACRE-AGIPAEEIDPA 101

Query: 209 LAMKAKDR---SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASN 265
            A++ +      L GAV   DG ++  RL     L A   GA +  + +V  LI++    
Sbjct: 102 EALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GG 159

Query: 266 RIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY 325
           R+ G ++ ++ +G+E    A+VV+NAAG +   + + A  +++  + P+ G  +++    
Sbjct: 160 RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIR--MFPAKGALLIMNHRI 217

Query: 326 SPEGMGLIVPKTKDGRVVFMLPWLGRTVA--GTTDSDTV-ITLLPEPHEDEIQFILDAIS 382
           +   +      + D  ++  +P  G T++  GTT         LP   E E+  +L   +
Sbjct: 218 NNTVINRCRKPS-DADIL--VP--GDTISIIGTTSERIDDPDDLPVTQE-EVDVLLREGA 271

Query: 383 DYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISR-----DHVVCEDFPGLVTITGGKW 437
             L   + +T +L A++G+RPL       +  +ISR     DH   +  PG +TITGGK 
Sbjct: 272 K-LAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGKL 330

Query: 438 TTYR 441
           TTYR
Sbjct: 331 TTYR 334

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase [Energy metabolism, Anaerobic]. Length = 516

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score =  112 bits (282), Expect = 1e-28
 Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 38/228 (16%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++VIGGG  G   A + A RGL V L+ER D +SG S R+  L+H G+R     +    
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLL--- 57

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
               +L   + +  +++I                 D+       +     +L A R L  
Sbjct: 58  ---ARLALESRDLWRELIEELGI----------DCDFRRTGVLVLARDEAELDALRRLAA 104

Query: 193 L-------SRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAAL 244
                        A+E  EL P L+       ++G + Y   G ++ +RL   LA  A  
Sbjct: 105 ALRALGLPVELLDAEELRELEPGLS-----PGIRGGLFYPDGGHVDPARLLRALARAAEA 159

Query: 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 292
            G  +L   EV  L ++       G  +       E    A  VVNA 
Sbjct: 160 LGVEILEGTEVTGLERE-------GGGVTVETEDGEI--RADKVVNAD 198

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 72.2 bits (177), Expect = 9e-14
 Identities = 66/345 (19%), Positives = 102/345 (29%), Gaps = 44/345 (12%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D+++IGGG  G   A   A RG  V ++E  +   G + R+   I          +    
Sbjct: 6   DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRP 65

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
              L L        +            L                +               
Sbjct: 66  LADLSLALWRELSEELGTGAGLRRRGLLDL------AAREGLKGLAQLERLAAELEAAGE 119

Query: 193 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVY-YDGQMNDSRLNVGLALTAALAGAA-VL 250
            +    A E+AEL P L        + G +     G ++   L   LA  A   G   + 
Sbjct: 120 DAELLDAAEAAELEPALGP----DFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIE 175

Query: 251 NHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPM 310
               V SL   E   R++G               A  VV AAG +   +     +   P+
Sbjct: 176 GGTPVTSL---ERDGRVVGVETDGG------TIEADKVVLAAGAWAGELAATLGELPLPL 226

Query: 311 ---------ICPSSGVH---IVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 358
                      P  G+    +        +G G I P   DGR+            GT +
Sbjct: 227 RPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRP-RGDGRLRV---------GGTDE 276

Query: 359 SDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRP 403
                   PE  +  I  +L      L   +    + +AW+G+RP
Sbjct: 277 EGGDDPSDPEREDLVIAELLRVARALLPG-LADAGIEAAWAGLRP 320

Length = 387

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 91/392 (23%), Positives = 143/392 (36%), Gaps = 75/392 (19%)

Query: 73  DILVIGGGATGC--GVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLE---K 126
           D+++IGGG  G      L      L V L+E+ED  +  +SS ++ +IH G+ Y     K
Sbjct: 5   DVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLK 64

Query: 127 AVFNLDYGQLKLVFHALEERKQVIR---NAPHLSNALPCMTPCFDWFEVVYYWVGLKM-Y 182
           A   +     +         KQ+     N   LS A           EV      L+  Y
Sbjct: 65  AKLCVAGNINEFAIC-----KQLGIPFINCGKLSVA-------TGEEEVER----LEKLY 108

Query: 183 DLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTA 242
           +      +  L      +E  EL P L   A       A++   G + D        LT 
Sbjct: 109 ERGKANGVFDLEI-LDKEEIKELEPLLNEGA-----VAALLVPSGGIVDPG-----ELTR 157

Query: 243 ALAGAAV-------LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295
           ALA  A        LN  EV  + K      ++      N S  E    AK V+NAAG +
Sbjct: 158 ALAEEAQANGVELRLNT-EVTGIEKQSDGVFVL------NTSNGEETLEAKFVINAAGLY 210

Query: 296 CDSVRKLADQNVQPMICPSSGVHIVL---------------PDYYSPEGMGLIVPKTKDG 340
            D + ++A       I P  G ++VL               P+   P G+G+    T DG
Sbjct: 211 ADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLP-GLGVHHTPTIDG 269

Query: 341 RVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSG 400
            ++F     G     +         +     D +  +  A S  +     + +VL+ ++G
Sbjct: 270 SLLF-----GPNALDSPKFLKGDRGV---DFDLLDSVRKANSRGMPDLGIKNNVLANYAG 321

Query: 401 IRPLAMDPSAKNTESISRDHVVCEDFPGLVTI 432
           IRP+  +P     + I  +    + F  +  I
Sbjct: 322 IRPILKEPRLPALDFIIPEAKDEDWFINVAGI 353

Length = 429

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           S L         D++VIG GA G   AL AA  GL+V LVER ++  GT++ S
Sbjct: 6   SELSPERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58

Length = 578

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 51/265 (19%), Positives = 78/265 (29%), Gaps = 52/265 (19%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI--------HGGVRYL 124
           D++VIG G  G   AL+AA  GL+V +VE+     G ++ S+  I          G+   
Sbjct: 1   DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSP 60

Query: 125 EKAVF----NLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
           +         LD              +  +  AP             DW E     V   
Sbjct: 61  DLHPTDTLKGLDE------LADHPYVEAFVEAAPEA----------VDWLE--ALGV--- 99

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM-NDSRLNVGLA 239
            +        + L               L   A  R+         G +     L   L 
Sbjct: 100 PFSRSTEDGHIDLRP----------LGGL--SATWRTPHDVADRRRGTLGTGHALLARLL 147

Query: 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV-VVNAAGPFCDS 298
             A   G           LI ++   R+ G  + N  +G+E    A   V+ A G F  +
Sbjct: 148 EGALKRGIDFQPRHPADDLIVED--GRVTGVVVENRRNGREVRIRAIAGVLLATGGFGRN 205

Query: 299 VRKLADQNVQPMICPSSGVHIVLPD 323
              L           ++G      D
Sbjct: 206 AELLLPAAGYAD---TTGPPANTGD 227

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV 121
           D+LVIG GA G   A+ A   GL V ++E+E    GT++ S     GGV
Sbjct: 11  DVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFS-----GGV 54

Length = 574

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 46/246 (18%), Positives = 76/246 (30%), Gaps = 75/246 (30%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++VIGGG  G   A++AA  GL+V L+ +     G +  +     GG+           
Sbjct: 8   DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQ----GGI----------- 52

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
                              NA  L N +       +             YD V G     
Sbjct: 53  -------------------NAA-LGNTVDVEGDSPELH----------FYDTVKG----- 77

Query: 193 LSRYYSAQESAELFPTLAMKA----------KDRSLKGAVV--YYDGQMNDSRLNVGLAL 240
                  Q++ E F   A +A            R+  G +    + G             
Sbjct: 78  -GDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKT 136

Query: 241 TAAL-----------AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVV 289
              L           +G  + +   V+ L+ D+    + G   R+  +G+ +   AK V+
Sbjct: 137 GHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRAKAVI 195

Query: 290 NAAGPF 295
            A G  
Sbjct: 196 LATGGA 201

Length = 562

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDF 105
           D++V+G G  G   A   A +GLRV L+E++ F
Sbjct: 2   DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 57  VVQESALIAAN---NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           +  E A +       S P  ++V+GGG  GC  A++AA+ G +V L+E+E    G S+++
Sbjct: 392 IATEDAEMRKKRIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKA 451

Query: 114 TKLIHG-GVR 122
           T  I+G G R
Sbjct: 452 TSGINGWGTR 461

Length = 1167

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSS 111
           D++V+GGG  G   A+ AA  G +V LVER  +  G ++
Sbjct: 1   DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGGMAT 39

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYL 124
           D++V+G GA G   A++AA  G RV ++ER   + G ++ S     GGV YL
Sbjct: 22  DVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALS-----GGVIYL 68

Length = 492

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117
            +LVIGGG  G   AL+ A  G +V LVE+E    G  ++  K  
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTF 170

Length = 622

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109
           D++VIG G  G   A+ AA  GL+V LVE+ +   GT
Sbjct: 6   DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT 42

Length = 454

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 65  AANNSNPLDILVIGGGATGCGVALDAATRGLRVGLV 100
           A    +P D+LV+GGG  G   A+ AA +GLR  +V
Sbjct: 206 ALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMV 241

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 69  SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104
           +   D++VIG G  G   A+ AA  GL+V +VE+E 
Sbjct: 2   AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37

Length = 462

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 40.5 bits (96), Expect = 0.002
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 67  NNSNPLDILVIGGGATGCGVALDAATRGLRVGLV-ER 102
           N  +P D+LV+GGG  G   A+ AA +G+R G+V ER
Sbjct: 207 NAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER 243

Length = 517

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 46  INDSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104
           I+D + VV  R+ +++  +      P D++V+G G  G   A  AA RG +V L+E  D
Sbjct: 111 ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169

Length = 415

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           D+LVIG GA G   A+ AA  GL+V +VE++    GT++ S
Sbjct: 14  DVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS 54

Length = 581

>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha; Validated

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 73  DILVIGGGATGCGVALDAAT--RGLRVGLVER 102
           DIL+IGGG  GCG A +A      L+V +VE+
Sbjct: 13  DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK 44

Length = 608

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 71  PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA 127
            LD+ ++G G  G  +AL  A  GL V L+ER         R   L    +R LE+ 
Sbjct: 2   MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL 58

Length = 387

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA 127
           DI VIGGG  G   A+  A  G  V LV  E        R+T L+   +R+LE+ 
Sbjct: 9   DIAVIGGGPAGLAAAIALARAGASVALVAPE--PPYADLRTTALLGPSIRFLERL 61

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	100.0
PLN02464	627	glycerol-3-phosphate dehydrogenase	100.0
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	100.0
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	100.0
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	100.0
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	100.0
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	100.0
PRK11728	393	hydroxyglutarate oxidase; Provisional	100.0
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	100.0
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	100.0
COG0579	429	Predicted dehydrogenase [General function predicti	99.98
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.98
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.98
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.97
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.97
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.97
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.96
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.96
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.96
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.95
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	99.95
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.94
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	99.94
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.94
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.94
PRK05257	494	malate:quinone oxidoreductase; Validated	99.93
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	99.93
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.93
KOG2853	509	consensus Possible oxidoreductase [General functio	99.91
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.84
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	99.82
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.81
KOG2852	380	consensus Possible oxidoreductase [General functio	99.79
PRK07121	492	hypothetical protein; Validated	99.79
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.75
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.74
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.73
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.72
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.72
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.71
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.71
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.71
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.71
PRK08274	466	tricarballylate dehydrogenase; Validated	99.71
PRK12839	572	hypothetical protein; Provisional	99.7
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.7
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.69
PLN02815	594	L-aspartate oxidase	99.69
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.69
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.69
PRK07804	541	L-aspartate oxidase; Provisional	99.68
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.67
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.67
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.67
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.67
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.67
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.67
COG2081	408	Predicted flavoproteins [General function predicti	99.66
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.66
PRK06185	407	hypothetical protein; Provisional	99.66
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.66
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.66
PRK07395	553	L-aspartate oxidase; Provisional	99.65
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.65
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.65
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.65
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.64
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.64
PRK06175	433	L-aspartate oxidase; Provisional	99.64
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.64
PRK08071	510	L-aspartate oxidase; Provisional	99.63
PRK09077	536	L-aspartate oxidase; Provisional	99.63
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.63
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.62
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.62
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.62
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.61
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.61
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.6
PRK08275	554	putative oxidoreductase; Provisional	99.6
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.59
PRK07512	513	L-aspartate oxidase; Provisional	99.58
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.57
PLN02697	529	lycopene epsilon cyclase	99.57
PRK06184	502	hypothetical protein; Provisional	99.56
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.56
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.55
PRK08244	493	hypothetical protein; Provisional	99.55
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.53
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.52
PRK06126	545	hypothetical protein; Provisional	99.52
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.51
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.51
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.5
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.5
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.5
PRK06834	488	hypothetical protein; Provisional	99.48
PRK10157	428	putative oxidoreductase FixC; Provisional	99.48
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.48
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.48
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.47
PRK08401	466	L-aspartate oxidase; Provisional	99.47
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.47
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.47
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.47
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.47
PRK08013	400	oxidoreductase; Provisional	99.46
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.46
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.46
PRK08294	634	phenol 2-monooxygenase; Provisional	99.45
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.45
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.45
PLN02463	447	lycopene beta cyclase	99.44
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.44
PRK10015	429	oxidoreductase; Provisional	99.44
PRK07045	388	putative monooxygenase; Reviewed	99.44
PRK07190	487	hypothetical protein; Provisional	99.42
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.42
PLN02985	514	squalene monooxygenase	99.41
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.41
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.4
PRK06847	375	hypothetical protein; Provisional	99.4
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.4
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.4
PLN02661	357	Putative thiazole synthesis	99.4
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.39
PRK11445	351	putative oxidoreductase; Provisional	99.38
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.37
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.37
PRK09126	392	hypothetical protein; Provisional	99.36
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.36
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.35
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.35
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.34
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.34
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.34
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.33
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.33
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.33
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.32
PRK08163	396	salicylate hydroxylase; Provisional	99.31
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.3
PRK07538	413	hypothetical protein; Provisional	99.29
PRK07588	391	hypothetical protein; Provisional	99.27
PRK06996	398	hypothetical protein; Provisional	99.27
PRK02106	560	choline dehydrogenase; Validated	99.26
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.26
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.24
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	99.22
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.22
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.21
PRK06753	373	hypothetical protein; Provisional	99.21
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.21
PRK06475	400	salicylate hydroxylase; Provisional	99.19
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.19
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.19
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.18
PRK05868	372	hypothetical protein; Validated	99.18
PTZ00367	567	squalene epoxidase; Provisional	99.17
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.16
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.16
PRK07208	479	hypothetical protein; Provisional	99.15
COG3573	552	Predicted oxidoreductase [General function predict	99.14
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.13
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.09
PRK07236	386	hypothetical protein; Provisional	99.08
PLN02785	587	Protein HOTHEAD	99.05
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.04
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.03
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.03
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.02
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.02
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.99
PRK07233	434	hypothetical protein; Provisional	98.99
PLN02612	567	phytoene desaturase	98.96
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.94
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.93
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.92
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.9
PRK06370	463	mercuric reductase; Validated	98.88
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.88
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.88
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.87
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.87
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.87
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.86
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.86
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.86
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.85
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.85
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.84
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.84
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.83
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.83
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.83
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.83
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.82
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.82
PRK06116	450	glutathione reductase; Validated	98.82
PTZ00058	561	glutathione reductase; Provisional	98.81
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.79
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.79
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.78
PLN02507	499	glutathione reductase	98.78
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.77
PRK10262	321	thioredoxin reductase; Provisional	98.76
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.76
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.75
PRK14694	468	putative mercuric reductase; Provisional	98.75
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.75
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.75
PLN02487	569	zeta-carotene desaturase	98.75
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.69
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.66
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.66
PLN02546	558	glutathione reductase	98.65
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.64
PRK09897	534	hypothetical protein; Provisional	98.62
PRK13748	561	putative mercuric reductase; Provisional	98.61
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.59
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.58
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.58
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.55
PLN02529	738	lysine-specific histone demethylase 1	98.55
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.54
PTZ00052	499	thioredoxin reductase; Provisional	98.54
PRK12831	464	putative oxidoreductase; Provisional	98.53
PLN02676	487	polyamine oxidase	98.53
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.52
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.52
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.51
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.49
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.46
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.46
PRK14727	479	putative mercuric reductase; Provisional	98.45
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.45
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.39
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.37
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.36
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.35
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.35
PRK07846	451	mycothione reductase; Reviewed	98.34
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.33
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.33
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.33
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.33
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.32
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.31
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.29
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.27
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.25
PLN02576	496	protoporphyrinogen oxidase	98.21
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.19
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.19
TIGR02053	463	MerA mercuric reductase. This model represents the	98.18
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.18
PLN02268	435	probable polyamine oxidase	98.18
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.15
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.15
COG3349	485	Uncharacterized conserved protein [Function unknow	98.15
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.13
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.12
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	98.12
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.12
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.1
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.08
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.08
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.07
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.06
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.05
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.02
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.02
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.01
PLN02568	539	polyamine oxidase	97.99
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.98
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.96
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.93
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.92
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.91
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.91
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.9
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.89
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.89
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.88
TIGR02053	463	MerA mercuric reductase. This model represents the	97.86
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.83
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.83
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.82
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.81
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.81
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.78
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.77
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.77
PRK06370	463	mercuric reductase; Validated	97.77
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.76
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.76
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.74
PLN02852	491	ferredoxin-NADP+ reductase	97.74
PRK06116	450	glutathione reductase; Validated	97.7
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.68
PRK10262	321	thioredoxin reductase; Provisional	97.67
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.66
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.66
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.65
PF10518	26	TAT_signal: TAT (twin-arginine translocation) path	97.64
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.64
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.63
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.61
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.61
PRK14727	479	putative mercuric reductase; Provisional	97.59
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.58
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.56
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.54
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.52
PLN02507	499	glutathione reductase	97.5
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.5
PRK14694	468	putative mercuric reductase; Provisional	97.5
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.49
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.48
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.48
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.47
PTZ00058	561	glutathione reductase; Provisional	97.46
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.44
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.44
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.43
PLN03000	881	amine oxidase	97.42
PRK13748	561	putative mercuric reductase; Provisional	97.41
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.39
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.38
PTZ00188	506	adrenodoxin reductase; Provisional	97.37
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.37
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.36
PTZ00052	499	thioredoxin reductase; Provisional	97.32
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.32
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.31
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.31
PRK07846	451	mycothione reductase; Reviewed	97.29
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.28
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.28
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	97.27
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.25
PLN02976	1713	amine oxidase	97.25
PLN02546	558	glutathione reductase	97.18
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.12
PRK13984	604	putative oxidoreductase; Provisional	97.09
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.04
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.97
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.97
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.84
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.68
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.66
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.43
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.37
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.36
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.28
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.27
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.23
TIGR02811	66	formate_TAT formate dehydrogenase region TAT targe	96.21
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.18
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.1
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.05
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.95
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.83
TIGR01409	29	TAT_signal_seq Tat (twin-arginine translocation) p	95.82
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.8
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.79
PLN02852	491	ferredoxin-NADP+ reductase	95.71
PRK13984	604	putative oxidoreductase; Provisional	95.54
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.37
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.28
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	95.13
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	95.12
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.05
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.01
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	94.87
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.83
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.78
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.76
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.72
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.7
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.69
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.64
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.6
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	94.59
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	94.54
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.53
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.46
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.38
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.32
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	94.32
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	94.32
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.32
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.28
KOG2755	334	consensus Oxidoreductase [General function predict	94.23
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.18
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.17
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.11
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.11
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.07
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.01
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.98
PRK04148	134	hypothetical protein; Provisional	93.85
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.81
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.78
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.77
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.77
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.69
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.66
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.66
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.62
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.47
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.39
PRK12831	464	putative oxidoreductase; Provisional	93.35
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.29
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.28
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.16
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.08
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.98
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.95
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	92.95
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	92.93
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.91
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.76
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.74
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	92.74
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.71
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	92.68
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	92.65
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.57
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.55
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.49
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.47
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.46
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.39
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.28
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.28
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.24
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	92.12
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.11
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.09
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	92.07
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.04
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.03
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.03
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.02
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	91.94
PLN02353	473	probable UDP-glucose 6-dehydrogenase	91.85
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	91.65
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.55
PRK08328	231	hypothetical protein; Provisional	91.55
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.53
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	91.41
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	91.4
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	91.36
PRK08223	287	hypothetical protein; Validated	91.36
PTZ00082	321	L-lactate dehydrogenase; Provisional	91.35
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.28
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	91.26
PRK07417	279	arogenate dehydrogenase; Reviewed	91.23
PRK12548	289	shikimate 5-dehydrogenase; Provisional	91.22
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.18
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	91.16
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.06
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.05
PRK06223	307	malate dehydrogenase; Reviewed	90.72
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	90.67
PRK08306	296	dipicolinate synthase subunit A; Reviewed	90.65
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	90.59
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	90.48
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.42
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	90.39
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.36
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	90.35
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.35
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.34
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	90.32
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.3
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.28
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.23
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.14
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.12
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.01
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	89.99
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.85
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	89.76
PTZ00117	319	malate dehydrogenase; Provisional	89.65
PRK05562	223	precorrin-2 dehydrogenase; Provisional	89.63
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.57
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.56
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	89.53
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.51
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	89.49
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	89.45
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	89.45
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.43
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	89.29
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	89.2

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=8e-59  Score=426.23  Aligned_cols=382  Identities=60%  Similarity=1.017  Sum_probs=357.3

Q ss_pred             CCChHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccC
Q 013476           53 VPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD  132 (442)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~  132 (442)
                      .|.|+.....+.   .+.++||+|||||..|.-+|+-++-+|++|.|+|++++++|+|++++.++|+|.+|++.+..+++
T Consensus        52 ~PsRe~~l~~l~---~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD  128 (680)
T KOG0042|consen   52 LPSREDLLEALK---STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLD  128 (680)
T ss_pred             CCCHHHHHHHhh---cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcC
Confidence            456777666666   67889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccc
Q 013476          133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMK  212 (442)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  212 (442)
                      .++.+.+++.+.|+..+.+..|+++..++.+.|.+.||+.++++.|.++|++++....+....++++++..+.+|.+   
T Consensus       129 ~~qyrlV~eaL~ER~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL---  205 (680)
T KOG0042|consen  129 YEQYRLVKEALNERANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPML---  205 (680)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccc---
Confidence            99999999999999999999999999999999999999999999999999999876666668999999999999999   


Q ss_pred             cccCCceeEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEcc
Q 013476          213 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA  292 (442)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAt  292 (442)
                       ..+...|.+.+++|+.|...+...++-.|..+|+.+....+|.+|..+++| +|.|+.+++..+|+...|+||.||+||
T Consensus       206 -~~~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~-kv~Ga~~rD~iTG~e~~I~Ak~VVNAT  283 (680)
T KOG0042|consen  206 -RKDNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG-KVIGARARDHITGKEYEIRAKVVVNAT  283 (680)
T ss_pred             -cccCceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC-ceeeeEEEEeecCcEEEEEEEEEEeCC
Confidence             788899999999999999999999988999999999999999999999888 999999999889999999999999999


Q ss_pred             CCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHH
Q 013476          293 GPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHED  372 (442)
Q Consensus       293 G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~  372 (442)
                      |.|+..++++-....+..+.|..|.+++++.-++|...+++.|.+.||+.+|++||.|..+.|.++.+.+.+.+|.|+++
T Consensus       284 GpfsDsIr~Mdd~~~~~i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWqg~TIaGTTD~pt~v~~~P~PtE~  363 (680)
T KOG0042|consen  284 GPFSDSIRKMDDEDAKPICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQGKTIAGTTDIPTSVTHSPTPTED  363 (680)
T ss_pred             CCccHHHHhhcccccCceeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccCCceeeccCCCCCCCCCCCCCCHH
Confidence            99999999998777667788999999999999999999999998999999999999999999999999777788999999


Q ss_pred             HHHHHHHHhhhhcCC--CCCCCCeeeeeeeccccccCCC-CCCCCCcccceeeEecCCCeEEEeccccccccC
Q 013476          373 EIQFILDAISDYLNV--KVRRTDVLSAWSGIRPLAMDPS-AKNTESISRDHVVCEDFPGLVTITGGKWTTYRR  442 (442)
Q Consensus       373 ~~~~~~~~~~~~~~~--~l~~~~~~~~~~G~r~~t~D~~-~~~~~~~~~~~~i~~~~~~~~~~~gg~~~~~~~  442 (442)
                      .++.|++.++.++..  .+...++...|+|+||+..|++ +.++.+.+|+.+|...++|+++++||||||||+
T Consensus       364 dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTTyR~  436 (680)
T KOG0042|consen  364 DIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTTYRH  436 (680)
T ss_pred             HHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCcchhHHH
Confidence            999999999999943  4778899999999999999994 577889999999999999999999999999995

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=100.00  E-value=2.2e-50  Score=404.57  Aligned_cols=389  Identities=85%  Similarity=1.314  Sum_probs=320.4

Q ss_pred             CCccCCCChHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHh
Q 013476           48 DSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA  127 (442)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~  127 (442)
                      ...+..+.+......+.......++||||||||+.|+++|+.|+++|++|+||||+++++|+|+++.+++|++++++...
T Consensus        48 ~~~~~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~  127 (627)
T PLN02464         48 DPNASVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA  127 (627)
T ss_pred             ccCCCCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHHHH
Confidence            34444566665555542111245699999999999999999999999999999999999999999999999999998876


Q ss_pred             hhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCC
Q 013476          128 VFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP  207 (442)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  207 (442)
                      ....++..+..+++.+.+...+....+++...+..+.+...++.....+.+...++.+....+++..++++.+++.+.+|
T Consensus       128 ~~~~~~~~~~l~~e~l~er~~l~~~ap~l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P  207 (627)
T PLN02464        128 VFQLDYGQLKLVFHALEERKQLIENAPHLCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFP  207 (627)
T ss_pred             hhCCCccceeehHHHHHHHHHHHhhChhhccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCC
Confidence            55555556667778888777777788888887777777777766666666777777776555555568999999999999


Q ss_pred             ccccccccC----CceeEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEE
Q 013476          208 TLAMKAKDR----SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFD  282 (442)
Q Consensus       208 ~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~  282 (442)
                      .+    ...    ...+++.+.+++++|..++..|++.++++|++++.+++|++|..++ ++ ++++|++.+..+++...
T Consensus       208 ~L----~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g-~v~gV~v~d~~tg~~~~  282 (627)
T PLN02464        208 TL----AKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTG-RIVGARVRDNLTGKEFD  282 (627)
T ss_pred             CC----CccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCC-cEEEEEEEECCCCcEEE
Confidence            98    544    4677788889999999999999999999999999999999998874 36 89999887644555557


Q ss_pred             EEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCC
Q 013476          283 TYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV  362 (442)
Q Consensus       283 i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~  362 (442)
                      +.||.||+|+|.|+..|+++++....+.+.|.+|.+++++....+.....+++...+++.+|++|+.|.+++|+++++.+
T Consensus       283 i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hlvl~~~~~~~~~~~i~~~~~dgr~~~~~P~~g~~liGtTd~~~~  362 (627)
T PLN02464        283 VYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSKTP  362 (627)
T ss_pred             EEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeEEEecccccCCCCceEEecCCCCCCEEEEEecCCcEEEecCCCCCC
Confidence            89999999999999999999875544458999999999876554544456666567889999999988899999988765


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhcCC-CCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEecccccccc
Q 013476          363 ITLLPEPHEDEIQFILDAISDYLNV-KVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR  441 (442)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~~~~~  441 (442)
                      .+.++.++++.++.|++.+.+++ + .+...++.+.|+|+||+++|+..+...+.+|+++|..+.+|++.++||||||||
T Consensus       363 ~~~~~~~t~~ei~~Ll~~a~~~~-~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk~Tt~R  441 (627)
T PLN02464        363 ITMLPEPHEDEIQFILDAISDYL-NVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITGGKWTTYR  441 (627)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhh-CCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEEEECChHHHHH
Confidence            55677888999999999999999 5 788899999999999999997766778889999998877899999999999998


Q ss_pred             C
Q 013476          442 R  442 (442)
Q Consensus       442 ~  442 (442)
                      +
T Consensus       442 ~  442 (627)
T PLN02464        442 S  442 (627)
T ss_pred             H
Confidence            4

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=9.3e-48  Score=365.38  Aligned_cols=358  Identities=44%  Similarity=0.687  Sum_probs=317.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||+||||||.|+-+|+.||.+|++|+|+|++++++|+|+++.+++|+|.+|+..       ..+..+.+.+.|...
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-------~e~~lvrEal~Er~v   82 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-------YEFSLVREALAEREV   82 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhh-------cchHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999999999876       345578899999999


Q ss_pred             HHHhCCcccccCCCcccCCc-hhhHHHHHHHHHHHHHHhc-cCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          149 VIRNAPHLSNALPCMTPCFD-WFEVVYYWVGLKMYDLVAG-RHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      +....|+.......+.+... ++.......+..+++.+.. ....+..+.++..+.....|.+    +++...|++.+.+
T Consensus        83 L~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l----~~~~l~ga~~y~D  158 (532)
T COG0578          83 LLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPAL----KKDGLKGAFRYPD  158 (532)
T ss_pred             HHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCccc----chhhccceEEEcc
Confidence            99999999999999888877 4556677788889999975 4455567888888888899999    7788888999999


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +++++..++...+..+.++|.+++..++|+++.+++   .|+||.+++..+|+...++|+.||+|||.|+.+++++.+..
T Consensus       159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~---~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~  235 (532)
T COG0578         159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREG---GVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE  235 (532)
T ss_pred             ceechHHHHHHHHHHHHhcccchhhcceeeeeeecC---CEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence            999999999999999999999999999999999987   39999999977888889999999999999999999998765


Q ss_pred             CC--CcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCC-CCCCCCCHHHHHHHHHHhhh
Q 013476          307 VQ--PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVI-TLLPEPHEDEIQFILDAISD  383 (442)
Q Consensus       307 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  383 (442)
                      ..  ..+.|.+|.+++++. ..+....++++...|++++|++|+.+..++|.|+...+. ++++.++++.++.+++.+..
T Consensus       236 ~~~~~~vr~skGsHlVv~~-~~~~~~a~~~~~~~d~r~~f~iP~~~~~liGTTD~~~~~~~~~~~~~~eEidyll~~~~~  314 (532)
T COG0578         236 QSPHIGVRPSKGSHLVVDK-KFPINQAVINRCRKDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEIDYLLDAVNR  314 (532)
T ss_pred             CCCCccceeccceEEEecc-cCCCCceEEeecCCCCceEEEecCCCCEEeeccccccCCCcccCCCCHHHHHHHHHHHHh
Confidence            43  259999999999998 555566777775559999999999999999999988654 67789999999999999997


Q ss_pred             hcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccccccccC
Q 013476          384 YLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWTTYRR  442 (442)
Q Consensus       384 ~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~~~~~~  442 (442)
                      ++.+.+...+|.+.|+|+||+..|+. .++..++|+++|..+.  +|+++++||||||||+
T Consensus       315 ~~~~~l~~~dI~~syaGVRPL~~~~~-~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR~  374 (532)
T COG0578         315 YLAPPLTREDILSTYAGVRPLVDDGD-DDTSAISRDHVLFDHAELAGLLTVAGGKLTTYRK  374 (532)
T ss_pred             hhhccCChhheeeeeeeeeeccCCCC-CchhhccCceEEEecCCCCCeEEEecchhHHhHH
Confidence            77788999999999999999999743 3688999999999988  9999999999999995

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=9e-42  Score=336.64  Aligned_cols=354  Identities=35%  Similarity=0.500  Sum_probs=268.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||||||||++|+++|+.|+++|++|+||||+++++|+|+++.+++|++.++...       ..+....+.+.++..+
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~-------~~~~l~~e~l~er~~l   77 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH-------YEFRLVREALAEREVL   77 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh-------ccHHHHHHHHHHHHHH
Confidence            459999999999999999999999999999999999999999999999999988654       1345677778888887


Q ss_pred             HHhCCcccccCCCcccCCchh-hHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          150 IRNAPHLSNALPCMTPCFDWF-EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                      ....+++...+.+..+..... .......+..+++.+.....+...+.+...... ..|.+    . +...+++.+.+++
T Consensus        78 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~-~~~~L----~-~~l~g~~~~~dg~  151 (508)
T PRK12266         78 LRMAPHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDP-AGSPL----K-PEITRGFEYSDCW  151 (508)
T ss_pred             HHhCCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcc-cCCCc----c-hhhcEEEEEcCcc
Confidence            788888777665544433211 111123344556554322222222222222111 11344    2 3356677788999


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-hCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~g~~~  307 (442)
                      ++|..++..+.+.++++|++++++++|+++..++ + . ++|.+.+..+|+..++.||.||+|+|.|+..++++ +|...
T Consensus       152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~  228 (508)
T PRK12266        152 VDDARLVVLNARDAAERGAEILTRTRVVSARREN-G-L-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS  228 (508)
T ss_pred             cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C-E-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence            9999999999999999999999999999998875 3 3 45666643456566899999999999999999875 46654


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCC-CCCCCCCCCHHHHHHHHHHhhhhc
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDT-VITLLPEPHEDEIQFILDAISDYL  385 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  385 (442)
                      ..++.|.+|++++++..... ....+++ ..+++++|++|+ .+..++|+++.+. ..+.+..++++.++.+++.+.+++
T Consensus       229 ~~~i~p~kG~~lvl~~~~~~-~~~~~~~-~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~  306 (508)
T PRK12266        229 PYGIRLVKGSHIVVPRLFDH-DQAYILQ-NPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYF  306 (508)
T ss_pred             CcceeeeeeEEEEECCcCCC-CcEEEEe-CCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence            55799999999988754332 2223334 678899999999 5788899987653 234567889999999999999999


Q ss_pred             CCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec----CCCeEEEeccccccccC
Q 013476          386 NVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGGKWTTYRR  442 (442)
Q Consensus       386 ~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~----~~~~~~~~gg~~~~~~~  442 (442)
                      ++.+...++.+.|+|+||+++|+.. ++.+.+|+|+|..+    .+|+|+++||||||||+
T Consensus       307 p~~l~~~~ii~~waG~RPl~~d~~~-~~~~~sr~~~i~~~~~~g~~gli~v~Ggk~Tt~r~  366 (508)
T PRK12266        307 KKQLTPADVVWTYSGVRPLCDDESD-SAQAITRDYTLELDDENGGAPLLSVFGGKITTYRK  366 (508)
T ss_pred             CCCCCHHHEEEEeeeeEeeCCCCCC-CcccCCcceEEEecccCCCCCeEEEEcChHHHHHH
Confidence            4479999999999999999999743 57888999999876    47899999999999984

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-41  Score=335.36  Aligned_cols=354  Identities=36%  Similarity=0.529  Sum_probs=268.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||+|||||++|+++|+.|+++|++|+||||+++++|+|+++++++|++.++....       ..+.+.+.+.+...
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~-------~~~l~~e~~~e~~~   76 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYY-------EFRLVREALIEREV   76 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhc-------cHHHHHHHHHHHHH
Confidence            45599999999999999999999999999999999999999999999999998886432       34466677777776


Q ss_pred             HHHhCCcccccCCCcccCCch-hhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          149 VIRNAPHLSNALPCMTPCFDW-FEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      +....+++........+.... ........+..+++.+.....++..+.++..+.....| +    . +...+++.+.++
T Consensus        77 l~~~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l----~-~~~~~a~~~~dg  150 (502)
T PRK13369         77 LLAAAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-L----K-PEYTKGFEYSDC  150 (502)
T ss_pred             HHHhCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCC-c----h-HhcCEEEEEcCe
Confidence            666667665554433332211 11122334556666654334444456666655544444 3    1 345677778899


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-hCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~g~~  306 (442)
                      ++++..++..+...++++|++++.+++|+++..++   ..++|.+.+ ..|+...++||.||+|+|.|+..+.++ +|..
T Consensus       151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~---~~~~v~~~~-~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~  226 (502)
T PRK13369        151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG---GLWRVETRD-ADGETRTVRARALVNAAGPWVTDVIHRVAGSN  226 (502)
T ss_pred             eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC---CEEEEEEEe-CCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence            99999999999999999999999999999998875   334567665 235556799999999999999999884 4655


Q ss_pred             CCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEEccCCCCCC-CCCCCCCCHHHHHHHHHHhhhh
Q 013476          307 VQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDY  384 (442)
Q Consensus       307 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  384 (442)
                      ...++.|.+|++++++...... ...+++ ..+++.+|++|+. +..++|+++.+.+ .+++..++++.++.+++.+.++
T Consensus       227 ~~~~v~p~kG~~lv~~~~~~~~-~~~~~~-~~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~  304 (502)
T PRK13369        227 SSRNVRLVKGSHIVVPKFWDGA-QAYLFQ-NPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRY  304 (502)
T ss_pred             CCcceEEeeEEEEEeCCccCCC-ceEEEe-CCCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHh
Confidence            4356899999999887543321 223333 5678889999996 5778899986633 3457788999999999999999


Q ss_pred             cCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC----CCeEEEeccccccccC
Q 013476          385 LNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF----PGLVTITGGKWTTYRR  442 (442)
Q Consensus       385 ~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~----~~~~~~~gg~~~~~~~  442 (442)
                      +++.+...++.+.|+|+||+++|+. +++.+.+|+|.|..+.    +|+|++.||||||||.
T Consensus       305 ~~~~l~~~~i~~~waGlRPl~~d~~-~~~~~~sR~~~i~~~~~~g~~gli~i~Ggk~Tt~r~  365 (502)
T PRK13369        305 FKEKLRREDVVHSFSGVRPLFDDGA-GNPSAVTRDYVFDLDAETGGAPLLSVFGGKITTFRK  365 (502)
T ss_pred             hCCCCCHhHEEEEeeceEEcCCCCC-CCcccCCcceEEeeccccCCCCeEEEeCChHhhHHH
Confidence            9448999999999999999999863 4567788999998653    7899999999999984

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=100.00  E-value=2e-40  Score=329.59  Aligned_cols=346  Identities=28%  Similarity=0.417  Sum_probs=252.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||+|||||+.|+++|+.|+++|++|+||||++++.++|+++.|++|++.+|....        .......+.+...
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~--------~~~~~~~~~e~~~   75 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTD--------AESARECISENQI   75 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccC--------HHHHHHHHHHHHH
Confidence            44699999999999999999999999999999999999999999999999987764311        1112222222222


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                      +....+++......+.......+..+.   ...++.. ...|++ .++++.+++...+|.+    . +...+++++.+++
T Consensus        76 l~~~a~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~Gi~-~~~l~~~e~~~~eP~l----~-~~~~ga~~~~dg~  145 (546)
T PRK11101         76 LKRIARHCVEPTDGLFITLPEDDLAFQ---ATFIRAC-EEAGIE-AEAIDPQQALILEPAV----N-PALIGAVKVPDGT  145 (546)
T ss_pred             HHHhchHhhcccCCceEEeccccHHHH---HHHHHHH-HHcCCC-cEEECHHHHHHhCCCc----C-ccceEEEEecCcE
Confidence            222222222111111111111111111   1122222 256776 7899999999999998    4 3456777766899


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ  308 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~  308 (442)
                      ++|..++.++...++++|++++++++|++|..++ + +|+||++.+..+++...|+||.||+|+|.|+..|.++.+..  
T Consensus       146 vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~-~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~--  221 (546)
T PRK11101        146 VDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG-D-TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR--  221 (546)
T ss_pred             ECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-C-eEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC--
Confidence            9999999999999999999999999999999876 5 89999987644565678999999999999999999988764  


Q ss_pred             CcccCCCeeEEEeCCCCCCCCceEEeee--cCCCcEEEEEecCCcEEEccCCCCC--CCCCCCCCCHHHHHHHHHHhhhh
Q 013476          309 PMICPSSGVHIVLPDYYSPEGMGLIVPK--TKDGRVVFMLPWLGRTVAGTTDSDT--VITLLPEPHEDEIQFILDAISDY  384 (442)
Q Consensus       309 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~g~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  384 (442)
                      .++.|.||++++++.....   ..+.+.  ..++  .++.|+++.+++|++.+..  +..++..++++.++.+++.+.++
T Consensus       222 ~~i~p~kG~~lv~~~~~~~---~vi~~~~~~~~~--~~~vp~~~~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l  296 (546)
T PRK11101        222 IRMFPAKGSLLIMDHRINN---HVINRCRKPADA--DILVPGDTISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKL  296 (546)
T ss_pred             CceeecceEEEEECCccCc---eeEeccCCCCCC--CEEEecCCEEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999753321   122221  1233  3467887888999988653  23345788999999999999999


Q ss_pred             cCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec-----CCCeEEEeccccccccC
Q 013476          385 LNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-----FPGLVTITGGKWTTYRR  442 (442)
Q Consensus       385 ~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~-----~~~~~~~~gg~~~~~~~  442 (442)
                      + |.+...++.+.|+|+||++.+....+..+.+|+++|..+     .+|+|+++|||+||||.
T Consensus       297 ~-P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGkltt~r~  358 (546)
T PRK11101        297 A-PVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL  358 (546)
T ss_pred             C-CCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECChHHHHHH
Confidence            8 899999999999999999653211235667888766543     27899999999999983

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=100.00  E-value=2.6e-34  Score=285.64  Aligned_cols=330  Identities=26%  Similarity=0.359  Sum_probs=242.2

Q ss_pred             HHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcccC
Q 013476           87 ALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPC  166 (442)
Q Consensus        87 A~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (442)
                      |+.|+++|++|+||||++++.|+|++|+|++|++.+|....        ...+...+.+...+....++.......+...
T Consensus         1 ArdLa~rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~~--------~~~a~~~~~~~~~l~~~a~~~~~~~g~L~va   72 (516)
T TIGR03377         1 MRDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTD--------QESARECIEENRILKRIARHCVEDTGGLFIT   72 (516)
T ss_pred             ChhHHHCCCCEEEEeCCCcccccccccccCcCcchhhhccC--------HHHHHHHHHHHHHHHHhChHhccCCCceEEe
Confidence            67899999999999999999999999999999998775321        1122222333322222222222222211111


Q ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccChHHHHHHHHHHHHHcC
Q 013476          167 FDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG  246 (442)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G  246 (442)
                      ....+.....   ..+... +..|++ .++++++++.+.+|.+    .. ...+++++.++.++|..++..+.+.++++|
T Consensus        73 ~~~~~~~~~~---~~~~~~-~~~gi~-~~~l~~~e~~~~~P~l----~~-~~~ga~~~~dg~vdp~~l~~al~~~A~~~G  142 (516)
T TIGR03377        73 LPEDDLEFQK---QFLAAC-REAGIP-AEEIDPAEALRLEPNL----NP-DLIGAVKVPDGTVDPFRLVAANVLDAQEHG  142 (516)
T ss_pred             cCcccHHHHH---HHHHHH-HHCCCC-ceEECHHHHHHHCCCC----Ch-hheEEEEeCCcEECHHHHHHHHHHHHHHcC
Confidence            1111111110   122222 356776 7899999999999998    43 456677767899999999999999999999


Q ss_pred             ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCC
Q 013476          247 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS  326 (442)
Q Consensus       247 v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~  326 (442)
                      ++|+++++|++|..++ + ++++|++.+..+|+...++|+.||+|+|.|+..|.+++|..  .++.|.+|++++++....
T Consensus       143 a~i~~~t~V~~i~~~~-~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~~~~~~  218 (516)
T TIGR03377       143 ARIFTYTKVTGLIREG-G-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD--IRMFPAKGALLIMNHRIN  218 (516)
T ss_pred             CEEEcCcEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC--CceecceEEEEEECCccc
Confidence            9999999999999876 5 89999987544565668999999999999999999998874  478999999999975432


Q ss_pred             CCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeecccccc
Q 013476          327 PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM  406 (442)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~  406 (442)
                      ......... ..++  .|++|+.+.+++|++.+..+.+++..++++.++.+++.+.+++ |.+...++.+.|+|+||++.
T Consensus       219 ~~~~~~~~~-~~~g--~~~~P~~~~~liGtT~~~~~~~~~~~~~~~~v~~ll~~~~~~~-P~l~~~~i~~~~aGvRPl~~  294 (516)
T TIGR03377       219 NTVINRCRK-PSDA--DILVPGDTISIIGTTSERIDDPDDLPVTQEEVDVLLREGAKLA-PMLAQTRILRAFAGVRPLVA  294 (516)
T ss_pred             ccccccccC-CCCC--cEEEECCCeEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhC-cccccCCEEEEEeecccccC
Confidence            211111111 2344  3578998888999998765445567789999999999999999 89999999999999999987


Q ss_pred             CCCCCCCCCcccceeeEec-----CCCeEEEeccccccccC
Q 013476          407 DPSAKNTESISRDHVVCED-----FPGLVTITGGKWTTYRR  442 (442)
Q Consensus       407 D~~~~~~~~~~~~~~i~~~-----~~~~~~~~gg~~~~~~~  442 (442)
                      ++...+..+.+|+|+|..+     .+|+|+++|||+||||.
T Consensus       295 ~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGkltt~r~  335 (516)
T TIGR03377       295 VDDDPSGRNISRGIVLLDHAERDGLPGFITITGGKLTTYRL  335 (516)
T ss_pred             CCCCCCccccCCCeEEeecccccCCCCeEEEecchHHHHHH
Confidence            6433456788999977543     38899999999999984

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=100.00  E-value=1.3e-31  Score=258.38  Aligned_cols=331  Identities=18%  Similarity=0.183  Sum_probs=223.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCccCCCCcccchhhhhHHh-hhccCcchHHHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKA-VFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  146 (442)
                      ++||+|||||++|+++|++|+++  |++|+||||.. ++.++|+++.|+++++..+.... ...+.....+.+.++..+ 
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-   80 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ-   80 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHH-
Confidence            48999999999999999999999  99999999996 78889999999988764332111 111111111111111111 


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                         ...  .+ .....+....+..+....   .+.++.. +..+++ .++++.+++.+.+|.+    .  ...+.+.+.+
T Consensus        81 ---~~~--~~-~~~G~l~~~~~~~~~~~l---~~~~~~~-~~~g~~-~~~l~~~el~~~~P~l----~--~~~al~~p~~  143 (393)
T PRK11728         81 ---HGI--PY-EECGKLLVATSELELERM---EALYERA-RANGIE-VERLDAEELREREPNI----R--GLGAIFVPST  143 (393)
T ss_pred             ---cCC--Cc-ccCCEEEEEcCHHHHHHH---HHHHHHH-HHCCCc-EEEeCHHHHHHhCCCc----c--ccceEEcCCc
Confidence               011  11 111111111111111111   1222333 256666 8899999999999987    3  3444455678


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +++++..++..|.+.+++.|++++++++|+++..+++  .+ .|..   .+   .++.||.||+|+|.|+..+++.+|+.
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~---~~---g~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN--GV-VVRT---TQ---GEYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC--eE-EEEE---CC---CEEEeCEEEECCCcchHHHHHHhCCC
Confidence            8999999999999999999999999999999987664  43 3433   12   26899999999999999999999887


Q ss_pred             CCCcccCCCeeEEEeCCCCCCCCceEEeeecCC---CcEEEEEec-CCcEEEccCCCCCC--CCCCCC-C----------
Q 013476          307 VQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPE-P----------  369 (442)
Q Consensus       307 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~-~g~~~~g~~~~~~~--~~~~~~-~----------  369 (442)
                      .+.++.|.+|+++.+...........+++....   ...+|+.|. +|++++|++.....  ..++.. .          
T Consensus       215 ~~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~  294 (393)
T PRK11728        215 PDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILT  294 (393)
T ss_pred             CCCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHh
Confidence            556799999999988754322222344442111   234788896 67899997543321  111211 1          


Q ss_pred             -----------CHHHHHHH---------HHHhhhhcCCCCCCCCeeeeeeeccc--cccCCCCCCCCCcccceeeEecCC
Q 013476          370 -----------HEDEIQFI---------LDAISDYLNVKVRRTDVLSAWSGIRP--LAMDPSAKNTESISRDHVVCEDFP  427 (442)
Q Consensus       370 -----------~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~G~r~--~t~D~~~~~~~~~~~~~~i~~~~~  427 (442)
                                 +.+.++++         ++.+.+++ |.+...++.+.|+|+||  +++|+..      ..||+|... +
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-P~l~~~~i~~~~~G~Rp~~~~~d~~~------~~d~~i~~~-~  366 (393)
T PRK11728        295 YPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYC-PSLTLSDLQPYPAGVRAQAVSRDGKL------VDDFLFVET-P  366 (393)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhC-CCCCHHHcccCCCceeeeeeCCCCCc------cCceEEecC-C
Confidence                       34455555         58899999 99999999999999999  8999653      369977654 8


Q ss_pred             CeEEEeccc
Q 013476          428 GLVTITGGK  436 (442)
Q Consensus       428 ~~~~~~gg~  436 (442)
                      +++++.|..
T Consensus       367 ~~~~~~~~~  375 (393)
T PRK11728        367 RSLHVCNAP  375 (393)
T ss_pred             CEEEEcCCC
Confidence            888888764

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=100.00  E-value=1.1e-30  Score=253.58  Aligned_cols=327  Identities=18%  Similarity=0.237  Sum_probs=220.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR-GL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~-G~-~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      ...+||+|||||++|+++|++|+++ |. +|+||||+.++.++|+++.++++.+......  ..    ......+.+.+.
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~--~~----~~~~s~~l~~~l  101 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPES--AE----LYEHAMKLWEGL  101 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccc--cH----HHHHHHHHHHHH
Confidence            4569999999999999999999995 95 8999999998889999999988654322110  00    001111112211


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC-----CceeE
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-----SLKGA  221 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~~~~  221 (442)
                      .........+.. ...+.......+....   .+.++.. +..|++ .++++.+++.+.+|.+    ..+     ...++
T Consensus       102 ~~~~~~~~~~~~-~G~l~~a~~~~~~~~l---~~~~~~~-~~~g~~-~~~l~~~el~~~~P~l----~~~~~~~~~~~ga  171 (407)
T TIGR01373       102 SQDLNYNVMFSQ-RGVLNLCHSTADMDDG---ARRVNAM-RLNGVD-AELLSPEQVRRVIPIL----DFSPDARFPVVGG  171 (407)
T ss_pred             HHHhCCCcCEEe-ccEEEEeCCHHHHHHH---HHHHHHH-HHcCCC-eEEeCHHHHHHhCCCC----ccccccccceeEE
Confidence            111111111111 1111111111111111   1222222 256776 7899999999999988    322     23444


Q ss_pred             EE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476          222 VV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR  300 (442)
Q Consensus       222 ~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~  300 (442)
                      ++ +..+.++|..+...|++.++++|++++.+++|++++.++++ ++++|.+.   +   ..+.|+.||+|+|+|+..+.
T Consensus       172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~~~v~t~---~---g~i~a~~vVvaagg~~~~l~  244 (407)
T TIGR01373       172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGG-RVIGVETT---R---GFIGAKKVGVAVAGHSSVVA  244 (407)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-cEEEEEeC---C---ceEECCEEEECCChhhHHHH
Confidence            44 55788999999999999999999999999999999865435 77666653   2   26999999999999999999


Q ss_pred             hhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHH
Q 013476          301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILD  379 (442)
Q Consensus       301 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  379 (442)
                      +++++..  ++.+.+++.++.+.....  ...++. . ++..+|++|. +|++++|+..+.. ...+..++.+..+.+++
T Consensus       245 ~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~~y~~p~~~g~~~ig~~~~~~-~~~~~~~~~~~~~~l~~  317 (407)
T TIGR01373       245 AMAGFRL--PIESHPLQALVSEPLKPI--IDTVVM-S-NAVHFYVSQSDKGELVIGGGIDGY-NSYAQRGNLPTLEHVLA  317 (407)
T ss_pred             HHcCCCC--CcCcccceEEEecCCCCC--cCCeEE-e-CCCceEEEEcCCceEEEecCCCCC-CccCcCCCHHHHHHHHH
Confidence            8887763  577888776655432211  111221 1 2234788897 4678888764321 12233456778889999


Q ss_pred             HhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC-CCeEEEeccc
Q 013476          380 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF-PGLVTITGGK  436 (442)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~-~~~~~~~gg~  436 (442)
                      .+.+++ |.+....+.+.|+|+||+|+|          +.|+|.+.+ +|+|+++|-.
T Consensus       318 ~~~~~~-P~l~~~~~~~~w~G~~~~t~D----------~~PiIg~~~~~gl~~a~G~~  364 (407)
T TIGR01373       318 AILEMF-PILSRVRMLRSWGGIVDVTPD----------GSPIIGKTPLPNLYLNCGWG  364 (407)
T ss_pred             HHHHhC-CCcCCCCeEEEeccccccCCC----------CCceeCCCCCCCeEEEeccC
Confidence            999999 889888899999999999999          689998864 8999999843

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=100.00  E-value=1.9e-31  Score=254.94  Aligned_cols=328  Identities=27%  Similarity=0.355  Sum_probs=223.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhh-hhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVR-YLEKAVFNLDYGQLKLVFHALEERKQVIR  151 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (442)
                      ||+|||||++|+++|++|+++|++|+|||++.+++++|+++.+++++... .....       ..+...+.+..+..+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~   73 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQ-------YARLARESVEFWRELAE   73 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHH-------HHHHHHHHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccccccccccccccccccccccccc-------ccchhhhhccchhhhhh
Confidence            89999999999999999999999999999999899999999999987631 11111       11122222222222222


Q ss_pred             hCC--cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476          152 NAP--HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM  229 (442)
Q Consensus       152 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  229 (442)
                      ...  ........+............   .+..+.+ +..+++ .+.++.+++...+|.+    ......+.+.+.++.+
T Consensus        74 ~~~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~g~i  144 (358)
T PF01266_consen   74 EYGIPVGFRPCGSLYLAEDEEDAESL---ERLLDRL-RRNGIP-YELLSPEELRELFPFL----NPRIEGGVFFPEGGVI  144 (358)
T ss_dssp             HTTSSCEEEECEEEEEESSHHHHHHH---HHHHHHH-HHTTTT-EEEEEHHHHHHHSTTS----STTTEEEEEETTEEEE
T ss_pred             hcCcccccccccccccccchhhhhhc---ccccccc-cccccc-ccccchhhhhhhhccc----ccchhhhhcccccccc
Confidence            211  111111111111111111111   1222333 256664 8999999999999988    5223344444567779


Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP  309 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~  309 (442)
                      ++..++..|.+.+++.|++|+.+++|++|..+++  +|+||.+.   +  . .++||.||+|+|.|+..|++.++...  
T Consensus       145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~v~gv~~~---~--g-~i~ad~vV~a~G~~s~~l~~~~~~~~--  214 (358)
T PF01266_consen  145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG--RVTGVRTS---D--G-EIRADRVVLAAGAWSPQLLPLLGLDL--  214 (358)
T ss_dssp             EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT--EEEEEEET---T--E-EEEECEEEE--GGGHHHHHHTTTTSS--
T ss_pred             cccchhhhhHHHHHHhhhhccccccccchhhccc--cccccccc---c--c-ccccceeEecccccceeeeecccccc--
Confidence            9999999999999999999999999999999884  88888773   2  2 49999999999999999999887764  


Q ss_pred             cccCCCeeEEEeCCCCCCCCceEEeee--cCCCcEEEEEecCCcEEEccCCCCCCCCCC--------CCCCHHHHHHHHH
Q 013476          310 MICPSSGVHIVLPDYYSPEGMGLIVPK--TKDGRVVFMLPWLGRTVAGTTDSDTVITLL--------PEPHEDEIQFILD  379 (442)
Q Consensus       310 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~  379 (442)
                      ++.+.+++++.++..............  ..+....|++|+.+.+++|.+.........        ....++ ++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~  293 (358)
T PF01266_consen  215 PLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRPGGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLE  293 (358)
T ss_dssp             TEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEETTEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHH
T ss_pred             cccccceEEEEEccCCcccccccccccccccccccceecccccccccccccccccccccccccccccccccHH-HHHhHH
Confidence            688999998888754443322332211  223356888998888889844422111101        011222 568999


Q ss_pred             HhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec--CCCeEEEeccccc
Q 013476          380 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGGKWT  438 (442)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~--~~~~~~~~gg~~~  438 (442)
                      .+.+++ |.+...++.+.|+|+||+|+|          +.|+|...  .+++|.++|..+.
T Consensus       294 ~~~~~~-p~l~~~~v~~~~~g~r~~t~d----------~~p~ig~~~~~~~l~~~~g~~~~  343 (358)
T PF01266_consen  294 RLARLL-PGLGDAEVVRSWAGIRPFTPD----------GRPIIGELPGSPNLYLAGGHGGH  343 (358)
T ss_dssp             HHHHHS-GGGGGSEEEEEEEEEEEEETT----------SECEEEEESSEEEEEEEECETTC
T ss_pred             HHHHHH-HHhhhccccccccceeeeccC----------CCeeeeecCCCCCEEEEECCCch
Confidence            999999 899999999999999999999          68999986  4889998877644

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.98  E-value=3.7e-30  Score=240.94  Aligned_cols=339  Identities=23%  Similarity=0.260  Sum_probs=237.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC--CeEEEEeccC-CCCCCccCCCCcccchhhhhHHhh-hccCcchHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAV-FNLDYGQLKLVFHALEE  145 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  145 (442)
                      .++||||||||+.|+++|++|++.+  ++|+||||.. ++.++|.+|+|.+|.++.+..... .++....-..++++..+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999998  9999999996 888999999999999976644311 11111111111111111


Q ss_pred             HHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEee
Q 013476          146 RKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY  225 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  225 (442)
                      .    ..  .+... ..+.......+.....   ++++... .+++...+.++.+++.++.|.+    ......+.+.+.
T Consensus        82 ~----~~--~f~~~-g~l~vA~~e~e~~~L~---~l~~~~~-~ngv~~~~~ld~~~i~~~eP~l----~~~~~aal~~p~  146 (429)
T COG0579          82 L----GI--PFINC-GKLSVATGEEEVERLE---KLYERGK-ANGVFDLEILDKEEIKELEPLL----NEGAVAALLVPS  146 (429)
T ss_pred             h----CC--ccccc-CeEEEEEChHHHHHHH---HHHHHHh-hCCCcceeecCHHHHHhhCccc----cccceeeEEcCC
Confidence            1    11  11111 2223333333333322   3344443 6777778999999999999998    434444555577


Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      .+.+++..++.+|.+.++++|+++++|++|+.|+++++|  ++-+..   .+|+.. ++||.||+|+|.++..|+++.|+
T Consensus       147 ~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg--~~~~~~---~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~  220 (429)
T COG0579         147 GGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG--VFVLNT---SNGEET-LEAKFVINAAGLYADPLAQMAGI  220 (429)
T ss_pred             CceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc--eEEEEe---cCCcEE-EEeeEEEECCchhHHHHHHHhCC
Confidence            889999999999999999999999999999999998864  332333   344433 99999999999999999999999


Q ss_pred             CCCCcccCCCeeEEEeCCCCCCCCceEEeeecCC---CcEEEEEec-CCcEEEccCCCCCC--CCCCCCCCHHHHHHHHH
Q 013476          306 NVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPEPHEDEIQFILD  379 (442)
Q Consensus       306 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~-~g~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~  379 (442)
                      .....+.|++|++++++..........+++....   +..+.++|. +|.+++|++.....  ...+...+.+..+.+..
T Consensus       221 ~~~~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~  300 (429)
T COG0579         221 PEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRK  300 (429)
T ss_pred             CcccccCccceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhccccccccchhhhHHH
Confidence            8667889999999999875444445566653322   345667775 67899999987642  22234556666777777


Q ss_pred             HhhhhcCCCCC-CCCeeeeeeeccccccCCCCCCCCCcccceeeEec--CCCeEEEecc
Q 013476          380 AISDYLNVKVR-RTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG  435 (442)
Q Consensus       380 ~~~~~~~~~l~-~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~--~~~~~~~~gg  435 (442)
                      ...+.+ +++. .......+.|.||+..++     .....+|+|...  .++++.++|-
T Consensus       301 ~~~~~~-~~~~~~~~~~~~y~~~r~~~~~~-----~~~~~~~~ip~~~~~~~~~~~aGi  353 (429)
T COG0579         301 ANSRGM-PDLGIKNNVLANYAGIRPILKEP-----RLPALDFIIPEAKDEDWFINVAGI  353 (429)
T ss_pred             hhhhhc-ccccccccchhhhheeccccccc-----cccccceecccccCCCCceeeeeE
Confidence            788888 6766 455667789999987442     333478888743  4777777664

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.98  E-value=4.7e-30  Score=250.06  Aligned_cols=329  Identities=17%  Similarity=0.115  Sum_probs=215.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHH----------hhh----------cc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEK----------AVF----------NL  131 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~----------~~~----------~~  131 (442)
                      ||+|||||++|+++|++|+++|.+|+|||+.. ++.++|++|+|++++++.+...          ...          ..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG   81 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCCC
Confidence            89999999999999999999999999999985 7889999999998876532110          000          00


Q ss_pred             CcchHH-------------------HHHHHHHH----HHHHHHh---CCcccccCCCcccCCchhhHHHHHHHHHHHHHH
Q 013476          132 DYGQLK-------------------LVFHALEE----RKQVIRN---APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLV  185 (442)
Q Consensus       132 ~~~~~~-------------------~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (442)
                      ......                   .+.+....    +..+.+.   ...+ .....+....+.......   .+..+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~-~~~G~l~~a~~~~~~~~l---~~~~~~~  157 (416)
T PRK00711         82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEG-RQGGTLQLFRTQQQLDAA---AKDIAVL  157 (416)
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc-ccCcEEEEECCHHHHHHH---HHHHHHH
Confidence            000000                   01111111    1111110   0000 000111111111111111   1222333


Q ss_pred             hccCCCCcceecCHhhHHhhCCcccccccc--CCceeEEE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC
Q 013476          186 AGRHLLHLSRYYSAQESAELFPTLAMKAKD--RSLKGAVV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE  262 (442)
Q Consensus       186 ~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~  262 (442)
                       +..|++ .++++.+++.+.+|.+    ..  ....++++ +.++.++|..++..|.+.++++|++|+++++|++++.++
T Consensus       158 -~~~g~~-~~~l~~~e~~~~~P~l----~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~  231 (416)
T PRK00711        158 -EEAGVP-YELLDRDELAAVEPAL----AGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG  231 (416)
T ss_pred             -HHcCCC-ceecCHHHHHHhCCCc----cCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC
Confidence             256776 8899999999999987    31  34445544 567899999999999999999999999999999998876


Q ss_pred             CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcE
Q 013476          263 ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRV  342 (442)
Q Consensus       263 ~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (442)
                       + ++++|+..      ..++.||.||+|+|.|+..+++.+|..  .++.|.+++.+.++..... ..+.... ......
T Consensus       232 -~-~~~~v~t~------~~~~~a~~VV~a~G~~~~~l~~~~g~~--~pi~p~rg~~~~~~~~~~~-~~p~~~~-~~~~~~  299 (416)
T PRK00711        232 -G-RITGVQTG------GGVITADAYVVALGSYSTALLKPLGVD--IPVYPLKGYSLTVPITDED-RAPVSTV-LDETYK  299 (416)
T ss_pred             -C-EEEEEEeC------CcEEeCCEEEECCCcchHHHHHHhCCC--cccCCccceEEEEecCCCC-CCCceeE-EecccC
Confidence             4 66666542      237899999999999999998888765  3688999987766432211 1111111 111212


Q ss_pred             EEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceee
Q 013476          343 VFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV  422 (442)
Q Consensus       343 ~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i  422 (442)
                      +++.+.++++++|+..+.  ...+..+++...+.+.+.+.+++ |.+....+.+.|+|+||+|+|          +.|+|
T Consensus       300 ~~~~~~~~~~~iG~~~~~--~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G~r~~t~D----------~~PiI  366 (416)
T PRK00711        300 IAITRFDDRIRVGGMAEI--VGFDLRLDPARRETLEMVVRDLF-PGGGDLSQATFWTGLRPMTPD----------GTPIV  366 (416)
T ss_pred             EEEeecCCceEEEEEEEe--cCCCCCCCHHHHHHHHHHHHHHC-CCcccccccceeeccCCCCCC----------CCCEe
Confidence            233334678888876544  22344566777888888999999 888888899999999999999          68899


Q ss_pred             EecC-CCeEEEeccc
Q 013476          423 CEDF-PGLVTITGGK  436 (442)
Q Consensus       423 ~~~~-~~~~~~~gg~  436 (442)
                      ...+ +|+|+++|-.
T Consensus       367 G~~~~~gl~~a~G~~  381 (416)
T PRK00711        367 GATRYKNLWLNTGHG  381 (416)
T ss_pred             CCcCCCCEEEecCCc
Confidence            8764 8999888743

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.98  E-value=1.4e-29  Score=246.00  Aligned_cols=333  Identities=18%  Similarity=0.173  Sum_probs=211.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhh-------hHHhh-h------------c
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRY-------LEKAV-F------------N  130 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~-------~~~~~-~------------~  130 (442)
                      +||+|||||++|+++|++|+++|++|+||||+. ++.++|++|+|++.+....       ..... .            .
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPK   81 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecCC
Confidence            699999999999999999999999999999997 7889999999988653210       00000 0            0


Q ss_pred             cCcchHHH-----------------HHHHHHHHHH----HHHh---CCcccccCCCcccCCchhhHHHHHHHHHHHHHHh
Q 013476          131 LDYGQLKL-----------------VFHALEERKQ----VIRN---APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA  186 (442)
Q Consensus       131 ~~~~~~~~-----------------~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (442)
                      .......+                 .++...+...    +.+.   ...+. ....+....+.......   .+..+.+ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~G~l~~a~~~~~~~~l---~~~~~~~-  156 (410)
T PRK12409         82 PSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLE-RRGILHIYHDKAGFDHA---KRVNALL-  156 (410)
T ss_pred             CCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceee-cCcEEEEECCHHHHHhc---cHHHHHH-
Confidence            00000000                 1111111111    1111   01111 01111111111111111   1222333 


Q ss_pred             ccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCC
Q 013476          187 GRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASN  265 (442)
Q Consensus       187 ~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~  265 (442)
                      +..+++ .++++.+++.+.+|.+    .. ...++++ +.++++++..++..|.+.+++.|++|+++++|+++..+++  
T Consensus       157 ~~~g~~-~~~l~~~e~~~~~P~l----~~-~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~--  228 (410)
T PRK12409        157 AEGGLE-RRAVTPEEMRAIEPTL----TG-EYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGG--  228 (410)
T ss_pred             HhcCCC-eEEcCHHHHHHhCCCC----cc-ccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--
Confidence            255665 7899999999999987    43 3344444 5677899999999999999999999999999999987663  


Q ss_pred             eEEEEEEEECCCC-ceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCC--CCCCceEEeeecCCCcE
Q 013476          266 RIIGARIRNNLSG-KEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY--SPEGMGLIVPKTKDGRV  342 (442)
Q Consensus       266 ~v~gV~~~~~~~g-~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~  342 (442)
                      .++ +.+.+ .++ +...++||.||+|+|.|+..+.++++..  .++.|++|+++.++...  .....+.+.....+..+
T Consensus       229 ~~~-v~~~~-~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~--~~i~p~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  304 (410)
T PRK12409        229 GVV-LTVQP-SAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR--VNVYPVKGYSITVNLDDEASRAAAPWVSLLDDSAKI  304 (410)
T ss_pred             EEE-EEEEc-CCCCccceEecCEEEECCCcChHHHHHHhCCC--CccccCCceEEEeecCCccccccCCceeeeecCCcE
Confidence            443 33432 111 0246899999999999999999888754  46889999877664321  11112221111122222


Q ss_pred             EEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceee
Q 013476          343 VFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV  422 (442)
Q Consensus       343 ~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i  422 (442)
                      .+..+..+++++|++.+.  ...+..++++.++.+++.+.+++ |.+....+. .|+|+|++|+|          +.|+|
T Consensus       305 ~~~~~~~~~~~igg~~~~--~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~-~w~G~r~~t~D----------~~Pii  370 (410)
T PRK12409        305 VTSRLGADRFRVAGTAEF--NGYNRDIRADRIRPLVDWVRRNF-PDVSTRRVV-PWAGLRPMMPN----------MMPRV  370 (410)
T ss_pred             EEEecCCCcEEEEEEEEe--cCCCCCCCHHHHHHHHHHHHHhC-CCCCccccc-eecccCCCCCC----------CCCee
Confidence            222223467778877654  22345567778999999999999 888877766 79999999999          68899


Q ss_pred             Eec-CCCeEEEecc
Q 013476          423 CED-FPGLVTITGG  435 (442)
Q Consensus       423 ~~~-~~~~~~~~gg  435 (442)
                      ... .||+|+++|=
T Consensus       371 G~~~~~~l~~~~G~  384 (410)
T PRK12409        371 GRGRRPGVFYNTGH  384 (410)
T ss_pred             CCCCCCCEEEecCC
Confidence            875 4899988873

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.97  E-value=1.2e-28  Score=235.88  Aligned_cols=321  Identities=17%  Similarity=0.126  Sum_probs=202.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIR  151 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (442)
                      +||+|||||++|+++|++|+++|++|+|||+...+.++|+++.|++.+..... ..       ..++..+....+..+..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~-~~-------~~~l~~~~~~~~~~l~~   72 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAP-GP-------AWDRARRSREIWLELAA   72 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCC-cc-------HHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999888899999998875421110 00       01111111111111111


Q ss_pred             hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-eeCcccC
Q 013476          152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMN  230 (442)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~  230 (442)
                      ...........+............   .+..+.. +..+.+ .++++.+++.+.+|.+    ..+...++++ +.+++++
T Consensus        73 ~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~g~~-~~~l~~~~~~~~~p~l----~~~~~~~~~~~~~~g~v~  143 (365)
T TIGR03364        73 KAGIWVRENGSLHLARTEEELAVL---EEFAATR-EPAEYR-VELLTPAEVAAKFPAL----RLDGLRGGLHSPDELRVE  143 (365)
T ss_pred             HcCCCEEeCCEEEEeCCHHHHHHH---HHHHHhh-hhcCCC-eEEECHHHHHHhCCCC----CccCceEEEEcCCCeeEC
Confidence            110001111111111111111111   0111111 234544 7899999999999977    4345555554 5688999


Q ss_pred             hHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476          231 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP  309 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~  309 (442)
                      |..++..|.+.+.++ |++|+++++|++|..   + .   |.+   ..|   .+.||.||+|+|.|+..|++.++..  .
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~-~---v~t---~~g---~i~a~~VV~A~G~~s~~l~~~~~~~--~  208 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G-T---VRT---SRG---DVHADQVFVCPGADFETLFPELFAA--S  208 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C-e---EEe---CCC---cEEeCEEEECCCCChhhhCcchhhc--c
Confidence            999999999988876 999999999999953   2 2   333   122   4689999999999999888766443  3


Q ss_pred             cccCCCeeEEEeCCCCCCC-------CceEEe---------------------ee-cCCCcEEEEEec-CCcEEEccCCC
Q 013476          310 MICPSSGVHIVLPDYYSPE-------GMGLIV---------------------PK-TKDGRVVFMLPW-LGRTVAGTTDS  359 (442)
Q Consensus       310 ~~~~~~g~~~~~~~~~~~~-------~~~~~~---------------------~~-~~~~~~~~~~p~-~g~~~~g~~~~  359 (442)
                      ++.|++++++.++......       ......                     +. ...+..+|++|. +|++++|++.+
T Consensus       209 ~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~  288 (365)
T TIGR03364       209 GVRRCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHE  288 (365)
T ss_pred             CcceEEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCccc
Confidence            6889999988765422100       000000                     00 012335788997 56799998875


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEecccc
Q 013476          360 DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKW  437 (442)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~  437 (442)
                      ... ..+...+....+.+.+.+.+++  .+.+.++.+.|+|+||+|+|          ..|++....+|+|.++|-.+
T Consensus       289 ~~~-~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~w~G~r~~t~d----------~~~v~~~~~~g~~~a~G~~g  353 (365)
T TIGR03364       289 YGL-APDPFDDEEIDNLILAEAKTIL--GLPDLDIVERWQGVYASSPP----------APIFLERPDDGVTVVVVTSG  353 (365)
T ss_pred             ccC-CCCCcchHHHHHHHHHHHHHhc--CCCCCceEEEEeEEecCCCC----------CCceecCCCCCeEEEEecCC
Confidence            422 1122234444556777777665  57778899999999999998          57777544689998888443

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.97  E-value=2.2e-28  Score=240.02  Aligned_cols=331  Identities=15%  Similarity=0.081  Sum_probs=202.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHH----HH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVF----HA  142 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~  142 (442)
                      +.++||+|||||++|+++|++|+++  |.+|+|||++.++.|+|++|+|++.+...........+..+....+.    +.
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  101 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQA  101 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHH
Confidence            3459999999999999999999998  99999999998899999999997643211111000001111111111    11


Q ss_pred             HHHHHHHH---HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCce
Q 013476          143 LEERKQVI---RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK  219 (442)
Q Consensus       143 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  219 (442)
                      +.....+.   .....+.. ...+.......+....   .+..+.+. +.|++..++++.+++.+.+|..      ....
T Consensus       102 ~~~~~~l~~~~~i~~~~~~-~G~l~~a~~~~~~~~l---~~~~~~~~-~~G~~~~~~l~~~e~~~~~~~~------~~~~  170 (460)
T TIGR03329       102 VLEIAAFCEQHNIDAQLRL-DGTLYTATNPAQVGSM---DPVVDALE-RRGINSWQRLSEGELARRTGSA------RHLE  170 (460)
T ss_pred             HHHHHHHHHHhCCCCCccc-CCEEEEecCHHHHHHH---HHHHHHHH-HhCCCCeEEcCHHHHHHHhCCC------cceE
Confidence            11111111   11111111 1111111111111111   12223332 4666535899999998887642      2233


Q ss_pred             eEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          220 GAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       220 ~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      +.+.+.++.++|.+++..|.+.+++.|++|+++++|++|.. +   ....|..   ..   ..+.|+.||+|||.|+..+
T Consensus       171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~~~~v~t---~~---g~v~A~~VV~Atga~s~~l  240 (460)
T TIGR03329       171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G---QPAVVRT---PD---GQVTADKVVLALNAWMASH  240 (460)
T ss_pred             EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C---CceEEEe---CC---cEEECCEEEEccccccccc
Confidence            44556789999999999999999999999999999999975 3   2223333   12   3689999999999999888


Q ss_pred             hhhhCCCCCCcccCCCeeEEEeCCCCCC-----CCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCC--CCCCC--CC
Q 013476          300 RKLADQNVQPMICPSSGVHIVLPDYYSP-----EGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTV--ITLLP--EP  369 (442)
Q Consensus       300 ~~~~g~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~--~~~~~--~~  369 (442)
                      ++.++.    .+.|++++++...+....     ......+. .......|++|. +|++++|.......  ...++  ..
T Consensus       241 ~~~~~~----~~~p~~~~~~~t~pl~~~~~~~~~~~~~~~~-d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~  315 (460)
T TIGR03329       241 FPQFER----SIAIVSSDMVITEPAPDLLAATGLDHGTSVL-DSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQ  315 (460)
T ss_pred             ChhhcC----eEEEeccceEecCCCcHHHHhhcCCCCceEe-cchhhhhheeECCCCcEEEcCCccccccCcccccccCC
Confidence            876543    345566665554321110     00011111 111112467775 45688886532211  00011  12


Q ss_pred             CHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec--CCCeEEEeccc
Q 013476          370 HEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGGK  436 (442)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~--~~~~~~~~gg~  436 (442)
                      .....+.+.+.+.++| |.+.+.++.+.|+|++++|+|          +.|+|...  .+|+|.++|=.
T Consensus       316 ~~~~~~~l~~~~~~~f-P~L~~~~i~~~W~G~~~~t~D----------~~P~iG~~~~~~gl~~a~G~~  373 (460)
T TIGR03329       316 PSPYEALLTRSLRKFF-PALAEVPIAASWNGPSDRSVT----------GLPFFGRLNGQPNVFYGFGYS  373 (460)
T ss_pred             chHHHHHHHHHHHHhC-CCcCCCeeeEEEeceeCCCCC----------CCceeeeecCCCCEEEEeCcC
Confidence            2334567888899999 889999999999999999999          68999875  48999998833

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.97  E-value=4.4e-28  Score=233.19  Aligned_cols=323  Identities=18%  Similarity=0.125  Sum_probs=204.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC--CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +++||+|||||++|+++|++|+++|++|+||||+..+.  +++..+.+++....... .....+.....+.    +.+..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~-~~~~~l~~~s~~~----~~~l~   76 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEG-PAYVPLVLRAQEL----WRELE   76 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCC-chhhHHHHHHHHH----HHHHH
Confidence            46999999999999999999999999999999987543  34444444433211100 0000011111111    11111


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCC-ceeEEEeeC
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRS-LKGAVVYYD  226 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~  226 (442)
                      ..... ..+... ..+......  .....   +..+.+ ++.+++ .++++.+++.+.+|.+    .... ..+.+.+.+
T Consensus        77 ~~~~~-~~~~~~-G~l~~~~~~--~~~~~---~~~~~~-~~~g~~-~~~l~~~~~~~~~P~l----~~~~~~~a~~~~~~  143 (376)
T PRK11259         77 RESGE-PLFVRT-GVLNLGPAD--SDFLA---NSIRSA-RQHGLP-HEVLDAAEIRRRFPQF----RLPDGYIALFEPDG  143 (376)
T ss_pred             HHhCC-ccEEEE-CCEEEcCCC--CHHHH---HHHHHH-HHcCCC-cEEECHHHHHHhCCCC----cCCCCceEEEcCCC
Confidence            11111 011111 111111111  11110   122222 256765 7899999999999988    4333 334455668


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +.++|..++..+.+.+.+.|++++++++|+++..+++  .+ .|..   .++   .+.||.||+|+|.|+..|+..+   
T Consensus       144 g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~---~~g---~~~a~~vV~A~G~~~~~l~~~~---  211 (376)
T PRK11259        144 GFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD--GV-TVTT---ADG---TYEAKKLVVSAGAWVKDLLPPL---  211 (376)
T ss_pred             CEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC--eE-EEEe---CCC---EEEeeEEEEecCcchhhhcccc---
Confidence            8999999999999999999999999999999998764  33 2333   222   6899999999999998888763   


Q ss_pred             CCCcccCCCeeEEEeCCCCC---CCCceEEeeecCCCcEEEEEec-CCc-EEEccCCCCC----CCCCCCCC-CHHHHHH
Q 013476          307 VQPMICPSSGVHIVLPDYYS---PEGMGLIVPKTKDGRVVFMLPW-LGR-TVAGTTDSDT----VITLLPEP-HEDEIQF  376 (442)
Q Consensus       307 ~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~-~g~-~~~g~~~~~~----~~~~~~~~-~~~~~~~  376 (442)
                       ..++.|.+++++.+.....   ....+.+.....++..+|++|. +++ +++|++....    ....+... .+...+.
T Consensus       212 -~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (376)
T PRK11259        212 -ELPLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAE  290 (376)
T ss_pred             -cCCceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHH
Confidence             2467888898887754211   1112333322345556888897 556 8898776411    01111122 3566888


Q ss_pred             HHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccc
Q 013476          377 ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGK  436 (442)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~  436 (442)
                      +++.+.+++ |.+..  +.+.|+|+|++|||          +.|+|..++  +|+++++|-.
T Consensus       291 l~~~~~~~~-P~~~~--~~~~~~g~~~~t~D----------~~P~ig~~~~~~gl~~~~G~~  339 (376)
T PRK11259        291 LRPFLRNYL-PGVGP--CLRGAACTYTNTPD----------EHFIIDTLPGHPNVLVASGCS  339 (376)
T ss_pred             HHHHHHHHC-CCCCc--cccceEEecccCCC----------CCceeecCCCCCCEEEEeccc
Confidence            999999999 77665  78889999999999          689999864  8999998844

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.96  E-value=4e-27  Score=226.84  Aligned_cols=324  Identities=15%  Similarity=0.124  Sum_probs=203.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC--CCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS--SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      +||+|||||++|+++|++|+++|++|+|||+....  .+++..+++++....  .......+...+.+. |+.+.+.   
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~--~~~~~~~l~~~s~~~-~~~l~~~---   74 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY--PEDFYTPMMLECYQL-WAQLEKE---   74 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeecc--CchhHhHHHHHHHHH-HHHHHHH---
Confidence            69999999999999999999999999999998643  233433444433211  000011111111111 1111111   


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCce-eEEEeeCcc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK-GAVVYYDGQ  228 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~  228 (442)
                      ... ..... ...+.......  ...   .+..+.+ +..+++ .+.++.+++.+.+|.+    ...... +.+.+.++.
T Consensus        75 ~~~-~~~~~-~G~l~~~~~~~--~~~---~~~~~~~-~~~g~~-~~~l~~~e~~~~~P~l----~~~~~~~~~~~~~~g~  141 (380)
T TIGR01377        75 AGT-KLHRQ-TGLLLLGPKEN--QFL---KTIQATL-SRHGLE-HELLSSKQLKQRFPNI----RVPRNEVGLLDPNGGV  141 (380)
T ss_pred             hCC-eeEee-cCeEEEcCCCc--HHH---HHHHHHH-HHcCCC-eEEcCHHHHHHhCCCC----cCCCCceEEEcCCCcE
Confidence            010 00111 11111111111  111   1223333 256665 7899999999999987    433333 444567889


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ  308 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~  308 (442)
                      ++|..++..|.+.+++.|++++++++|+++..+++  .+. |.+.   +   .++.||.||+|+|.|+..|++++|+.. 
T Consensus       142 i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~--~~~-v~~~---~---~~i~a~~vV~aaG~~~~~l~~~~g~~~-  211 (380)
T TIGR01377       142 LYAEKALRALQELAEAHGATVRDGTKVVEIEPTEL--LVT-VKTT---K---GSYQANKLVVTAGAWTSKLLSPLGIEI-  211 (380)
T ss_pred             EcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCC--eEE-EEeC---C---CEEEeCEEEEecCcchHHHhhhcccCC-
Confidence            99999999999999999999999999999988763  442 4432   2   268999999999999999999888664 


Q ss_pred             CcccCCCeeEEEeCCCCCC-----CCceEEeeecCCCcEEEEEecC--CcEEEccCCCCC-----CCCCCCCCCHHHHHH
Q 013476          309 PMICPSSGVHIVLPDYYSP-----EGMGLIVPKTKDGRVVFMLPWL--GRTVAGTTDSDT-----VITLLPEPHEDEIQF  376 (442)
Q Consensus       309 ~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~--g~~~~g~~~~~~-----~~~~~~~~~~~~~~~  376 (442)
                       ++.|.+++...+......     ...+.++....+ ..+|++|..  ++++++......     ....+..+++..++.
T Consensus       212 -~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (380)
T TIGR01377       212 -PLQPLRINVCYWREKEPGSYGVSQAFPCFLVLGLN-PHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQI  289 (380)
T ss_pred             -CceEEEEEEEEEecCCccccCccCCCCEEEEeCCC-CceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHH
Confidence             677888876655432211     122333331222 247888863  245555322110     011123466778899


Q ss_pred             HHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccccc
Q 013476          377 ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWT  438 (442)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~~  438 (442)
                      +.+.+.+++ |.+.... .+.|.|+|++|||          ..|+|...+  +|+++++|..+.
T Consensus       290 l~~~~~~~~-P~l~~~~-~~~~~~~~~~t~D----------~~piIg~~p~~~~l~va~G~~g~  341 (380)
T TIGR01377       290 LRKFVRDHL-PGLNGEP-KKGEVCMYTNTPD----------EHFVIDLHPKYDNVVIGAGFSGH  341 (380)
T ss_pred             HHHHHHHHC-CCCCCCc-ceeeEEEeccCCC----------CCeeeecCCCCCCEEEEecCCcc
Confidence            999999999 8887544 5679999999999          699999864  899999986543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.96  E-value=2.2e-28  Score=249.93  Aligned_cols=309  Identities=19%  Similarity=0.144  Sum_probs=195.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .+||+|||||++|+++|++|+++|++|+|||+.. ++.++|+++.|++++...........+.........+.+.+... 
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~-  338 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPA-  338 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence            4899999999999999999999999999999985 78899999999887643211110000000000011111111110 


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  229 (442)
                      ......+ .....+....+..+..      ...+.+.........++++.++....++..      ....+.+.+.++++
T Consensus       339 ~~~~~~~-~~~G~l~~a~~~~~~~------~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~------~~~~g~~~p~~G~v  405 (662)
T PRK01747        339 AGVAFDH-DWCGVLQLAWDEKSAE------KIAKMLALGLPAELARALDAEEAEELAGLP------VPCGGIFYPQGGWL  405 (662)
T ss_pred             cCCCCCC-CCCceEEeecCchHHH------HHHHHHhccCchHhhhhCCHHHHHHHhCCC------CCCCcEEeCCCCee
Confidence            0000000 0001111111111111      111222111111125678888887776532      22344555678899


Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP  309 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~  309 (442)
                      +|..++.+|.+.+++ |++++++++|+++..+++  .+. |..   .++  ..+.|+.||+|+|.++..+....    ..
T Consensus       406 ~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~--~~~-v~t---~~g--~~~~ad~VV~A~G~~s~~l~~~~----~l  472 (662)
T PRK01747        406 CPAELCRALLALAGQ-QLTIHFGHEVARLEREDD--GWQ-LDF---AGG--TLASAPVVVLANGHDAARFAQTA----HL  472 (662)
T ss_pred             CHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC--EEE-EEE---CCC--cEEECCEEEECCCCCcccccccc----CC
Confidence            999999999999999 999999999999988764  443 333   222  35789999999999998877642    34


Q ss_pred             cccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEe-c-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCC
Q 013476          310 MICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLP-W-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNV  387 (442)
Q Consensus       310 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (442)
                      ++.|+||+++.++..........++.  .+   .|++| . +|.+++|++.+.  ...+..++++..+++++.+.+++ |
T Consensus       473 pl~p~RGqv~~~~~~~~~~~~~~~~~--~~---~Y~~p~~~~g~~~iGat~~~--~~~~~~~~~~~~~~~~~~l~~~~-P  544 (662)
T PRK01747        473 PLYSVRGQVSHLPTTPALSALKQVLC--YD---GYLTPQPANGTHCIGASYDR--DDTDTAFREADHQENLERLAECL-P  544 (662)
T ss_pred             CcccccceEEeecCCccccccCceeE--CC---ceeCCCCCCCceEeCcccCC--CCCCCCCCHHHHHHHHHHHHHhC-C
Confidence            68999999888764321111111121  12   47888 4 567889988865  23455677888889999999999 7


Q ss_pred             CC-----CCCCeeeeeeeccccccCCCCCCCCCcccceeeEe
Q 013476          388 KV-----RRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE  424 (442)
Q Consensus       388 ~l-----~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~  424 (442)
                      .+     ....+.+.|+|+||+|||          +.|+|..
T Consensus       545 ~l~~~~~~~~~~~~~~aG~R~~tpD----------~~PiIG~  576 (662)
T PRK01747        545 QALWAKEVDVSALQGRVGFRCASRD----------RLPMVGN  576 (662)
T ss_pred             CchhhhccCccccCceEEEeccCCC----------cccccCC
Confidence            65     456778899999999999          5677765

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.96  E-value=1.4e-26  Score=223.78  Aligned_cols=336  Identities=22%  Similarity=0.208  Sum_probs=214.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhH-H-hhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE-K-AVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  146 (442)
                      ++++||||||||++|+++||+|+++|.+|+|+|+...+.++|+++.+.+........ . ......... ...|+.+.+.
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   80 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLS-LALWRELSEE   80 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHH-HHHHHHHHHH
Confidence            356999999999999999999999999999999999888888888777654432211 0 000000011 1122222221


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-ee
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YY  225 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~  225 (442)
                      .   .....+.......  +................+.+. ..... .+.++..+..+..|.+    ..+...++++ +.
T Consensus        81 ~---~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~p~l----~~~~~~~a~~~~~  149 (387)
T COG0665          81 L---GTGAGLRRRGLLD--LAAREGLKGLAQLERLAAELE-AAGED-AELLDAAEAAELEPAL----GPDFVCGGLFDPT  149 (387)
T ss_pred             h---Ccchhcchhhhhh--hhhccccchHHHHHHHHHHHH-hcCCC-ceeCCHHHHHHhCCCC----CcccceeeEecCC
Confidence            1   1110011100000  000000000000001112221 22221 2578888888999988    4454555544 66


Q ss_pred             CcccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          226 DGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      .+.++|..++..|.+.++++| ..+..++++..+..+  + ++.+|.+.   .   ..+.|+.||+|+|.|+..+...++
T Consensus       150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~---~---g~i~a~~vv~a~G~~~~~l~~~~~  220 (387)
T COG0665         150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETD---G---GTIEADKVVLAAGAWAGELAATLG  220 (387)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeC---C---ccEEeCEEEEcCchHHHHHHHhcC
Confidence            889999999999999999999 566679999999886  2 34444442   2   249999999999999999999888


Q ss_pred             CCCCCcccCCCeeEEEeCCCCCCCCceEE-eeecCCCcEEEEEec-CCcEEEccCCCCCC-CCCCCCCCHHHHHHHHHHh
Q 013476          305 QNVQPMICPSSGVHIVLPDYYSPEGMGLI-VPKTKDGRVVFMLPW-LGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAI  381 (442)
Q Consensus       305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~  381 (442)
                       ....++.|.+++.+.++........... ..........|++|. ++.+++|.+.+... ...+.........++++.+
T Consensus       221 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  299 (387)
T COG0665         221 -ELPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVA  299 (387)
T ss_pred             -CCcCccccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHH
Confidence             4445799999998888754322111000 111122334788886 78899999876642 2222222221467899999


Q ss_pred             hhhcCCCCCCCCeeeeeeeccccc-cCCCCCCCCCcccceeeEe-c-CCCeEEEecccc
Q 013476          382 SDYLNVKVRRTDVLSAWSGIRPLA-MDPSAKNTESISRDHVVCE-D-FPGLVTITGGKW  437 (442)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~G~r~~t-~D~~~~~~~~~~~~~~i~~-~-~~~~~~~~gg~~  437 (442)
                      .+++ |.+....+.+.|+|+||+| ||          +.|+|.. . .||++.++|-.+
T Consensus       300 ~~~~-P~l~~~~~~~~w~g~~~~t~pd----------~~P~iG~~~~~~~l~~a~G~~~  347 (387)
T COG0665         300 RALL-PGLADAGIEAAWAGLRPPTTPD----------GLPVIGRAAPLPNLYVATGHGG  347 (387)
T ss_pred             HHhC-ccccccccceeeeccccCCCCC----------CCceeCCCCCCCCEEEEecCCC
Confidence            9999 8999888999999999988 99          6889984 4 489999988653

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.95  E-value=2.2e-25  Score=217.73  Aligned_cols=352  Identities=14%  Similarity=0.117  Sum_probs=205.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCcc--CCCCcccchh---hhhHHhhhc-cCcchHHHHHHH
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSS--RSTKLIHGGV---RYLEKAVFN-LDYGQLKLVFHA  142 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~--~~~g~~~~~~---~~~~~~~~~-~~~~~~~~~~~~  142 (442)
                      +||+|||||++|+++|++|++.  |++|+|+||.. ++.++|+  +|.|.+|.+.   .|....... ..........+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~   80 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ   80 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence            6999999999999999999997  99999999975 7778887  5777777665   221110000 000000011111


Q ss_pred             HHHHHHHH---HhC------CcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCC-ccee-cCHhhHHhhCCcccc
Q 013476          143 LEERKQVI---RNA------PHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH-LSRY-YSAQESAELFPTLAM  211 (442)
Q Consensus       143 ~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~p~~~~  211 (442)
                      +.....++   ...      ..+......+.......+.....   +.++.+ +..++. ..++ ++.+++.+++|.+..
T Consensus        81 ~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~---~~~~~~-~~~g~~~~~~~~l~~~el~~~eP~l~~  156 (483)
T TIGR01320        81 FQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLK---KRYEAL-KGHPLFEGMEFSEDPATFAEWLPLMAA  156 (483)
T ss_pred             HHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHH---HHHHHH-hcCCCccCceEeCCHHHHHHhCCCccc
Confidence            11111111   110      00011111111222222222211   222332 245552 2454 799999999999821


Q ss_pred             ccccCCceeE-EEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEE
Q 013476          212 KAKDRSLKGA-VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN  290 (442)
Q Consensus       212 ~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVl  290 (442)
                      ........++ +.+.++.+||..++.+|.+.++++|++|+++++|+++..++++ .+. |.+.+..+++...+.|++||+
T Consensus       157 ~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~-~v~-v~~~~~~~g~~~~i~A~~VV~  234 (483)
T TIGR01320       157 GRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG-SWT-VTVKNTRTGGKRTLNTRFVFV  234 (483)
T ss_pred             CCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-eEE-EEEeeccCCceEEEECCEEEE
Confidence            0001123344 4566889999999999999999999999999999999986543 322 333321334445799999999


Q ss_pred             ccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCCC-CCCCCceEEeeecCCCcEEEEEec------CCcEE--EccCCC
Q 013476          291 AAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDY-YSPEGMGLIVPKTKDGRVVFMLPW------LGRTV--AGTTDS  359 (442)
Q Consensus       291 AtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~------~g~~~--~g~~~~  359 (442)
                      |+|+|+..|++++|+..  ...+.|++|+++.++.. ........+++..+.+...|.+|+      +|..+  +|++..
T Consensus       235 AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~  314 (483)
T TIGR01320       235 GAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAG  314 (483)
T ss_pred             CCCcchHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCC
Confidence            99999999999999862  45789999999998654 222223445653222222556664      33444  888877


Q ss_pred             --CCCC--CC--C--CCCCHHH-------------------------HHHHHHHhhhhcCCCCCCCCeeeeeeecccccc
Q 013476          360 --DTVI--TL--L--PEPHEDE-------------------------IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM  406 (442)
Q Consensus       360 --~~~~--~~--~--~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~  406 (442)
                        +.-.  ..  |  ...+...                         ....++.+++++ |.+...++....+|+|+..-
T Consensus       315 ~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-p~~~~~d~~~~~~GiR~Q~i  393 (483)
T TIGR01320       315 WSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFY-PEAIDSDWELIVAGQRVQVI  393 (483)
T ss_pred             cchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCHHHcEEccCceEEEEE
Confidence              3111  11  1  0111000                         112345567888 89988888888999999988


Q ss_pred             CCCCCC--CCCcccceeeEecCCCeE
Q 013476          407 DPSAKN--TESISRDHVVCEDFPGLV  430 (442)
Q Consensus       407 D~~~~~--~~~~~~~~~i~~~~~~~~  430 (442)
                      |.+.+.  -.-..++|+|...+..+.
T Consensus       394 ~~~~~~~~g~l~~g~~~i~~~~~~~~  419 (483)
T TIGR01320       394 KKDPEKGGGVLEFGTTLIADADGSIA  419 (483)
T ss_pred             ecCCCCCcCEEecCCeEEECCCCeEE
Confidence            743100  012224667765433333

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=99.95  E-value=1.2e-25  Score=213.14  Aligned_cols=308  Identities=23%  Similarity=0.283  Sum_probs=201.3

Q ss_pred             HHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhh--hHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCccc
Q 013476           88 LDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY--LEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTP  165 (442)
Q Consensus        88 ~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (442)
                      ++|+++|.+|+||||..++.++|++++|++++....  .......+.....+.+.+..++.......... ......+..
T Consensus         1 ~~La~~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~-~~~~G~l~~   79 (337)
T TIGR02352         1 WELAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTG-YHQCGTLVV   79 (337)
T ss_pred             ChHHHCCCceEEEcCCCCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcC-eEEccEEEE
Confidence            579999999999999988899999999988653311  01111111111111111111111000000111 111111111


Q ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-eeCcccChHHHHHHHHHHHHH
Q 013476          166 CFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMNDSRLNVGLALTAAL  244 (442)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~  244 (442)
                      ..+........   +..+.. +..+.+ .++++.+++.+.+|.+    .. ...++++ +.++.++|..++..|.+.+++
T Consensus        80 a~~~~~~~~l~---~~~~~~-~~~~~~-~~~l~~~e~~~~~p~l----~~-~~~~g~~~~~~g~v~p~~l~~~l~~~~~~  149 (337)
T TIGR02352        80 AFDEDDVEHLR---QLADLQ-SATGME-VEWLSGRALRRLEPYL----SG-GIRGAVFYPDDAHVDPRALLKALEKALEK  149 (337)
T ss_pred             eCCHHHHHHHH---HHHHHH-HhcCCc-eEEcCHHHHHHhCCCC----Cc-ccceEEEcCCCceEChHHHHHHHHHHHHH
Confidence            11111111111   122222 245554 8999999999999987    43 3445554 568999999999999999999


Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCC
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDY  324 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~  324 (442)
                      +|++++.+++|++|..++ + ++++|...   .   ..+.||.||+|+|.|+..|.+       .++.|.+++++.++..
T Consensus       150 ~g~~~~~~~~v~~i~~~~-~-~~~~v~~~---~---g~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~~~~~~~  214 (337)
T TIGR02352       150 LGVEIIEHTEVQHIEIRG-E-KVTAIVTP---S---GDVQADQVVLAAGAWAGELLP-------LPLRPVRGQPLRLEAP  214 (337)
T ss_pred             cCCEEEccceEEEEEeeC-C-EEEEEEcC---C---CEEECCEEEEcCChhhhhccc-------CCccccCceEEEeecc
Confidence            999999999999999876 4 77777542   2   278999999999999988755       2578999988887543


Q ss_pred             CCCC-CceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeecc
Q 013476          325 YSPE-GMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIR  402 (442)
Q Consensus       325 ~~~~-~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r  402 (442)
                      ..+. ..+.... . .....|++|. ++++++|++....  ..+..++++.++.+++.+.+++ |.+...++.+.|+|+|
T Consensus       215 ~~~~~~~~~~~~-~-~~~~~y~~p~~~g~~~iG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~~~g~r  289 (337)
T TIGR02352       215 AVPLLNRPLRAV-V-YGRRVYIVPRRDGRLVVGATMEES--GFDTTPTLGGIKELLRDAYTIL-PALKEARLLETWAGLR  289 (337)
T ss_pred             ccccCCcccceE-E-EcCCEEEEEcCCCeEEEEEecccc--CccCCCCHHHHHHHHHHHHHhC-CCcccCcHHHheecCC
Confidence            2111 1111111 1 1224688896 4568999887653  2345677888999999999999 8888889999999999


Q ss_pred             ccccCCCCCCCCCcccceeeEecC--CCeEEEeccc
Q 013476          403 PLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGK  436 (442)
Q Consensus       403 ~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~  436 (442)
                      |+|+|          +.|+|...+  +|+|.++|-.
T Consensus       290 ~~t~D----------~~piig~~~~~~~~~~~~g~~  315 (337)
T TIGR02352       290 PGTPD----------NLPYIGEHPEDRRLLIATGHY  315 (337)
T ss_pred             CCCCC----------CCCEeCccCCCCCEEEEcccc
Confidence            99999          789998753  7888887743

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.94  E-value=3.6e-24  Score=207.45  Aligned_cols=343  Identities=16%  Similarity=0.155  Sum_probs=201.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEec-cCCCCCCcc--CCCCcccchhhhhHHhh-h---ccCcchHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVER-EDFSSGTSS--RSTKLIHGGVRYLEKAV-F---NLDYGQLKLV  139 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk-~~~~~g~s~--~~~g~~~~~~~~~~~~~-~---~~~~~~~~~~  139 (442)
                      ...+|||||||||+|+++|+.|++.  |++|+|+|| ..++.++|+  +|+|.+|.+.-...-.. .   .........+
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i   83 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI   83 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence            4558999999999999999999998  899999999 668888885  46666665542111000 0   0001100011


Q ss_pred             HHHHHHHHHHHHhCC---------cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCC-Ccceec-CHhhHHhhCCc
Q 013476          140 FHALEERKQVIRNAP---------HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLL-HLSRYY-SAQESAELFPT  208 (442)
Q Consensus       140 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~-~~~~~~~~~p~  208 (442)
                      .+.+.....++...+         .+....+.+.......+..+..   +.++.+. ..++ +.++++ +.+++.+++|.
T Consensus        84 ~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~---~r~~~~~-~~~~f~~~~~~~d~~el~~~~P~  159 (497)
T PRK13339         84 NEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLK---KRYEALK-QHPMFDNIEYTEDIEVMAKWMPL  159 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHH---HHHHHhh-ccCCCCCcEEecCHHHHHHhCCc
Confidence            111111111111111         1111222222222222222221   2233332 4444 347888 79999999999


Q ss_pred             cccccccCC-ceeEEEeeCcccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEc-CCCCeEEEEEEEECCCCceEEEEc
Q 013476          209 LAMKAKDRS-LKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKD-EASNRIIGARIRNNLSGKEFDTYA  285 (442)
Q Consensus       209 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~-~~g~~v~gV~~~~~~~g~~~~i~a  285 (442)
                      +........ ..+.+.+.++.+++..++++|.+.+++. |++++++++|++|.++ +++|.+   .+.+..+++...+.|
T Consensus       160 l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v---~v~~t~~g~~~~i~A  236 (497)
T PRK13339        160 MMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEV---TVKDRNTGEKREQVA  236 (497)
T ss_pred             ccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEE---EEEecCCCceEEEEc
Confidence            821001113 3344446677899999999999999754 8999999999999887 544433   332112332236899


Q ss_pred             CEEEEccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCCCCCCCC-ceEEeeecCCCcEEEEEecC------Cc--EEE
Q 013476          286 KVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSPEG-MGLIVPKTKDGRVVFMLPWL------GR--TVA  354 (442)
Q Consensus       286 ~~VVlAtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~------g~--~~~  354 (442)
                      |.||+|+|+|+..|++++|+..  ...+.|++|+++.++....... ...+++....+...|..|+.      |.  +.+
T Consensus       237 d~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~  316 (497)
T PRK13339        237 DYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLF  316 (497)
T ss_pred             CEEEECCCcchHHHHHHcCCCccCCCceEeeeEEEEEecCHHHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEE
Confidence            9999999999999999999863  2578999999999875221111 12455532222224556542      32  566


Q ss_pred             ccCCCCCC--CC-CC-------CCC-C---------------HHH-------HHHHHHHhhhhcCCCCCCCCeeeeeeec
Q 013476          355 GTTDSDTV--IT-LL-------PEP-H---------------EDE-------IQFILDAISDYLNVKVRRTDVLSAWSGI  401 (442)
Q Consensus       355 g~~~~~~~--~~-~~-------~~~-~---------------~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~G~  401 (442)
                      |++.....  .. .+       ... .               ...       ....++.+++++ |.+...++....+|+
T Consensus       317 GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~-P~~~~~D~~~~~aGi  395 (497)
T PRK13339        317 GPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFY-PEARAEDWRLYTAGK  395 (497)
T ss_pred             CCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHeeEcCCce
Confidence            76654420  00 00       000 0               000       124456677888 899888888889999


Q ss_pred             cccccCCCCCCCCCcccceeeE
Q 013476          402 RPLAMDPSAKNTESISRDHVVC  423 (442)
Q Consensus       402 r~~t~D~~~~~~~~~~~~~~i~  423 (442)
                      |+..-+.    +.+...+|++.
T Consensus       396 R~Q~i~~----~~~~~~dfl~~  413 (497)
T PRK13339        396 RVQVIKD----TPEHGKGFIQF  413 (497)
T ss_pred             EEEEEeC----CCCccCCEEEe
Confidence            9998873    33344577654

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=99.94  E-value=8.1e-26  Score=195.90  Aligned_cols=341  Identities=20%  Similarity=0.257  Sum_probs=242.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhh-ccCcchHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVF-NLDYGQLKLVFHALE  144 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  144 (442)
                      ...+|+||||||++|++.|.+|.-+  +.+|.|+||.. ++-..|++|+|.+|.|+.|...... .+..+..++.++++.
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~  125 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD  125 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence            4569999999999999999999987  99999999995 7888999999999999988655432 344556667777777


Q ss_pred             HHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEe
Q 013476          145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY  224 (442)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  224 (442)
                      +...-+.....++..       ....+.+..    ........+++++..++++..++.+++|+.      ....+.+.+
T Consensus       126 e~~IpyKk~GKLIVA-------t~~~EiprL----d~L~~~g~qN~v~glrmieg~ei~~~EP~c------rgvkAl~sP  188 (453)
T KOG2665|consen  126 EKKIPYKKTGKLIVA-------TESEEIPRL----DALMHRGTQNGVPGLRMIEGSEIMEMEPYC------RGVKALLSP  188 (453)
T ss_pred             hcCCChhhcceEEEE-------eChhhcchH----HHHHHhhhhcCCCCeeeeccchhhhcChhh------hhhhhhcCC
Confidence            765544444333322       122222211    111112237888899999999999999987      667777788


Q ss_pred             eCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       225 ~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ..|.+|-..++..+.+..+..|.++..|-+++.+.++.++---+-+++.   +++..+++++.||-|+|..+..+..+.|
T Consensus       189 htGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~---ngk~ee~r~~~~vtc~gl~sdr~aa~sg  265 (453)
T KOG2665|consen  189 HTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVL---NGKGEEKRTKNVVTCAGLQSDRCAALSG  265 (453)
T ss_pred             CcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEe---cCccceeEEeEEEEeccccHhHHHHHhC
Confidence            8999999999999999999999999999999999887643001113343   3456689999999999999999999999


Q ss_pred             CCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEE----EEec-CCcEEEccCCCC-------------------
Q 013476          305 QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVF----MLPW-LGRTVAGTTDSD-------------------  360 (442)
Q Consensus       305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~-~g~~~~g~~~~~-------------------  360 (442)
                      .+.++.+.|.+|.++.+.........+.++| .++.++-|    +.|+ ++.+++|.....                   
T Consensus       266 c~~dPriVpfrG~ylll~~ek~h~vk~niyP-vpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e  344 (453)
T KOG2665|consen  266 CELDPRIVPFRGEYLLLKPEKLHLVKGNIYP-VPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVE  344 (453)
T ss_pred             CCCCCeeeeccchhhhcChHHhccccCceee-CCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhh
Confidence            9988889999998777655433333444555 44444322    3443 445555544221                   


Q ss_pred             -CCCC---------CCCCCCH----HHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec-
Q 013476          361 -TVIT---------LLPEPHE----DEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-  425 (442)
Q Consensus       361 -~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~-  425 (442)
                       ....         .+.-.++    .++..-.+.+++++ |++...++.+-.+|+|+.-.|+    +.+.+.||+++-. 
T Consensus       345 ~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyi-Pdlk~~di~rGpaGvRaqald~----~gnlv~DFVfd~g~  419 (453)
T KOG2665|consen  345 WIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYI-PDLKDSDIERGPAGVRAQALDG----DGNLVDDFVFDGGE  419 (453)
T ss_pred             heecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhC-ccccccccccCcccccchhccC----CCCCchheEEecCc
Confidence             1000         1111222    22333448899999 9999999999999999999995    4566789999864 


Q ss_pred             ---CCCeEEEecc
Q 013476          426 ---FPGLVTITGG  435 (442)
Q Consensus       426 ---~~~~~~~~gg  435 (442)
                         .|+++.+-+.
T Consensus       420 g~~~p~llh~rna  432 (453)
T KOG2665|consen  420 GHLVPRLLHVRNA  432 (453)
T ss_pred             cccccceEEecCC
Confidence               3778776543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.94  E-value=4.4e-24  Score=187.28  Aligned_cols=334  Identities=14%  Similarity=0.113  Sum_probs=194.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC--CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      .+..||+|||||+.|+++||+|+++|.+++|||+.+++.  |+|...+.++...  |.+..+.       ..+.+.++++
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~--Y~e~~Y~-------~m~~ea~e~W   75 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPA--YAEDKYM-------SMVLEAYEKW   75 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechh--hhhHHHH-------HHHHHHHHHH
Confidence            456899999999999999999999999999999997543  3333333333322  1111111       1222223332


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCC-ccccccccCCceeEEEee
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP-TLAMKAKDRSLKGAVVYY  225 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~  225 (442)
                      ................+...........    .+....+ +..++. .+.++.+++.+.+| ...   -++...|.....
T Consensus        76 ~~~~~~~g~~~~~~t~~~~~~~~e~~~~----~sv~~~~-k~~~l~-h~~l~seEvrk~fP~~~~---l~d~~~G~~n~~  146 (399)
T KOG2820|consen   76 RNLPEESGVKLHCGTGLLISGDPERQRL----DSVAANL-KRKGLA-HSVLISEEVRKRFPSNIP---LPDGWQGVVNES  146 (399)
T ss_pred             HhChhhhceeecccceeeecCcHHHHHH----HHHHHHH-hhhhhh-hhhhhHHHHHHhCCCCcc---CCcchhhccccc
Confidence            2211111111110000000000000000    0111111 233443 67788999999999 431   235566777788


Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-h
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-A  303 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~  303 (442)
                      +|.+++.+-+.++...+++.|+.|+.+..|..+...+ ++ ..++|.+.   +|  ..+.||.+|+++|.|.+.|++. +
T Consensus       147 gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~-~~v~V~Tt---~g--s~Y~akkiI~t~GaWi~klL~~~~  220 (399)
T KOG2820|consen  147 GGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEG-NHVSVQTT---DG--SIYHAKKIIFTVGAWINKLLPTSL  220 (399)
T ss_pred             ccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCC-ceeEEEec---cC--CeeecceEEEEecHHHHhhcCccc
Confidence            9999999999999999999999999999999887543 23 44444442   33  3799999999999999999985 4


Q ss_pred             CCCCCCcccCCCeeEEEeCCCC------CCCCceEEeeecCCC-cEEEEEec---CCcEEEccC----CCCCCCCCCC--
Q 013476          304 DQNVQPMICPSSGVHIVLPDYY------SPEGMGLIVPKTKDG-RVVFMLPW---LGRTVAGTT----DSDTVITLLP--  367 (442)
Q Consensus       304 g~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~p~---~g~~~~g~~----~~~~~~~~~~--  367 (442)
                      ++..  ++.|.+-....+....      ......+.++..++. -+.|.+|.   .+.+-+-..    ..+. .+..+  
T Consensus       221 ~~~~--Pv~~i~ltvcywk~~~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~-~~~~p~~  297 (399)
T KOG2820|consen  221 AIGF--PVAPIQLTVCYWKTKKNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPI-DPDGPPK  297 (399)
T ss_pred             ccCC--ccceeEeehhhheeecCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCC-CCCCCcc
Confidence            5543  3433332222221110      011122333333444 24555663   222222111    1111 11111  


Q ss_pred             CCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccccccc
Q 013476          368 EPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWTTY  440 (442)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~~~~  440 (442)
                      .+.+. ..++++++.+-+.|.++...+...-.|++.+|||          -+|+|+.++  .++|+.+||.|...
T Consensus       298 ~s~~~-~idl~~~f~~~~~p~l~~~~p~~t~~C~YT~TpD----------~~FviD~~P~~~Nv~Vg~G~SGHGF  361 (399)
T KOG2820|consen  298 RSLPK-AIDLMRRFLRTFGPDLDDRSPINTKMCMYTDTPD----------ANFVIDKHPQYDNVFVGGGGSGHGF  361 (399)
T ss_pred             cCcch-HHHHHHHHHHHhCccccCCCcceeeEEEeeCCCC----------cCeeeecCCCcccEEEecCCCCcce
Confidence            22233 4455555554444899988888888999999999          699999875  77999999988653

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.94  E-value=4.2e-25  Score=208.96  Aligned_cols=324  Identities=23%  Similarity=0.284  Sum_probs=221.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ...||||||+|.+|+.+||+||++|.+ ++++|+.....|+++++.|++.. ++..+............ ....+++.. 
T Consensus        38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~-lr~~dv~~qlia~~~~~-l~~~leeEt-  114 (856)
T KOG2844|consen   38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQ-LFPSDVELQLIAHTSRV-LYRELEEET-  114 (856)
T ss_pred             CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceee-ccCCchhHHHHHHHHHH-HHHHHHHhc-
Confidence            448999999999999999999999999 66667777888899988887754 22211111111111111 111111111 


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHH---hccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-e
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLV---AGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-Y  224 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~  224 (442)
                        .....++.....++ +.++...       ..+..+   ...+|+. .+.+++++..+.+|.+    +.+.+.++++ +
T Consensus       115 --gl~tGwiq~G~~~l-As~~~R~-------de~kR~~S~g~a~g~e-~~lLsPee~~~~~pLL----n~d~v~g~Ly~P  179 (856)
T KOG2844|consen  115 --GLHTGWIQNGGIFL-ASNRQRL-------DEYKRLMSRGKAHGVE-SELLSPEETQELFPLL----NVDDVYGGLYSP  179 (856)
T ss_pred             --CCCcceecCCceEE-ecCHHHH-------HHHHHHHHhhhhccce-eeecCHHHHHHhCccc----chhHheeeeecC
Confidence              11111222211111 1111111       112222   1356765 8999999999999999    7788888776 6


Q ss_pred             eCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       225 ~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      .+|.+||..++++|+..|++.|+.|+++++|++|....+  +..||++.      .+.|+|..||+|||.|+..+-++.|
T Consensus       180 ~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~~gVeT~------~G~iet~~~VNaaGvWAr~Vg~m~g  251 (856)
T KOG2844|consen  180 GDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--KFGGVETP------HGSIETECVVNAAGVWAREVGAMAG  251 (856)
T ss_pred             CCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--Cccceecc------CcceecceEEechhHHHHHhhhhcC
Confidence            799999999999999999999999999999999988775  55577663      3579999999999999999999988


Q ss_pred             CCCCCcccCCCeeEEEeCCCCCCCCce-EEeeecCCCcEEEEEecCCcEEEccCCCCCC---------CCCCCCCCHHHH
Q 013476          305 QNVQPMICPSSGVHIVLPDYYSPEGMG-LIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV---------ITLLPEPHEDEI  374 (442)
Q Consensus       305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~---------~~~~~~~~~~~~  374 (442)
                      ++  .+++|+...+++......-.... ..++ ..|++ +|++-+.+++..|+.....-         .....+++-+..
T Consensus       252 vk--vPL~p~~H~YvvT~~IeGi~s~t~p~ir-D~DgS-vylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F  327 (856)
T KOG2844|consen  252 VK--VPLVPMHHAYVVTSRIEGVSSLTRPNIR-DLDGS-VYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHF  327 (856)
T ss_pred             Cc--ccceeeeeeEEEecccCCccCCCcccee-cccce-EEEEecCCceeccccccCceeccccCCccccccccccHhhh
Confidence            65  47899998877776543221111 1222 34553 67777778888887754321         011233666777


Q ss_pred             HHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEec
Q 013476          375 QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITG  434 (442)
Q Consensus       375 ~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~g  434 (442)
                      ...++.+...+ |.+++..+...-.|...+|||          ..|++.+++  .|+++.+|
T Consensus       328 ~~hlesai~r~-P~l~k~~i~~~v~gpe~ftPD----------~~p~mGe~p~~~gy~v~~G  378 (856)
T KOG2844|consen  328 EPHLEAAIERV-PVLEKAGIKSLVNGPETFTPD----------HLPIMGESPEVRGYWVACG  378 (856)
T ss_pred             HHHHHHHHHhC-chhhhcCccceecCccccCCc----------cccccCCCccccceEEeec
Confidence            88888888888 899999999999999999999          567776654  66666554

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.93  E-value=2.3e-23  Score=203.71  Aligned_cols=354  Identities=14%  Similarity=0.111  Sum_probs=203.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCcc--CCCCcccchhh---hhHHh-hhccCcc-h---
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSS--RSTKLIHGGVR---YLEKA-VFNLDYG-Q---  135 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~--~~~g~~~~~~~---~~~~~-~~~~~~~-~---  135 (442)
                      +..+||||||||++|+++|++|++.  |++|+||||.. ++.++|+  +|+|.+|.+..   |.... ...+... .   
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~   82 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI   82 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence            4558999999999999999999985  88999999986 5666766  68887776631   11100 0000000 0   


Q ss_pred             ---HHHHHHHHHHHHHHHHh---CCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCC-ccee-cCHhhHHhhCC
Q 013476          136 ---LKLVFHALEERKQVIRN---APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH-LSRY-YSAQESAELFP  207 (442)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~p  207 (442)
                         +....+++...... ..   ...+......+.......+.....   +.++.+. ..++. ..++ ++.+++.+++|
T Consensus        83 ~~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~---~~~~~~~-~~g~~~~~~~~~d~~el~e~eP  157 (494)
T PRK05257         83 NEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLK---KRYEALK-ANPLFAGMEFSEDPAQIKEWAP  157 (494)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHH---HHHHHHH-hCCCCCCCEEeCCHHHHHHhCc
Confidence               01111111111110 00   000111111111122222222211   2333332 45542 3556 48899999999


Q ss_pred             ccccccccCCceeE-EEeeCcccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc
Q 013476          208 TLAMKAKDRSLKGA-VVYYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA  285 (442)
Q Consensus       208 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a  285 (442)
                      .+......+...++ +.+.++.+|+..+++.|.+.+++.| ++|+++++|++|..++++ .+. |.+.+..+|+..++.|
T Consensus       158 ~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg-~~~-v~~~~~~~G~~~~i~A  235 (494)
T PRK05257        158 LMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG-SWT-VTVKDLKTGEKRTVRA  235 (494)
T ss_pred             ccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC-CEE-EEEEEcCCCceEEEEc
Confidence            87210011233344 4566889999999999999999987 899999999999986655 332 3333212343346999


Q ss_pred             CEEEEccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCCCCCC-CCceEEeeecCCCcEEEEEec------CCc--EEE
Q 013476          286 KVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPW------LGR--TVA  354 (442)
Q Consensus       286 ~~VVlAtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~------~g~--~~~  354 (442)
                      ++||+|+|+|+..|++++|+..  ..++.|++|+++.++..... .....+++....+...|.+|+      +|.  +.+
T Consensus       236 ~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~  315 (494)
T PRK05257        236 KFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEVVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLF  315 (494)
T ss_pred             CEEEECCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHHHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEE
Confidence            9999999999999999998873  35689999999998754211 111225542221222345554      232  566


Q ss_pred             ccCCCCCC--CC-CC-------CCCC--HHH---------------------HHHHHHHhhhhcCCCCCCCCeeeeeeec
Q 013476          355 GTTDSDTV--IT-LL-------PEPH--EDE---------------------IQFILDAISDYLNVKVRRTDVLSAWSGI  401 (442)
Q Consensus       355 g~~~~~~~--~~-~~-------~~~~--~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~~G~  401 (442)
                      |++.....  .. .+       ....  ...                     ....++.+++++ |.+...++....+|+
T Consensus       316 GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~d~~~~~aG~  394 (494)
T PRK05257        316 GPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFY-PNAKPEDWELIVAGQ  394 (494)
T ss_pred             CCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHceEcCCce
Confidence            76654311  00 00       0000  000                     124456677888 889888888888999


Q ss_pred             cccccCCCCCCCCCcccceeeEecCCCeE
Q 013476          402 RPLAMDPSAKNTESISRDHVVCEDFPGLV  430 (442)
Q Consensus       402 r~~t~D~~~~~~~~~~~~~~i~~~~~~~~  430 (442)
                      |+..-+.+.++-.+...+|.|....++.+
T Consensus       395 R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~  423 (494)
T PRK05257        395 RVQIIKKDPKKGGVLQFGTEVVSSADGSI  423 (494)
T ss_pred             EeEEEccCCCCCCEEECCcEEEecCCCeE
Confidence            99988743211145566753333335544

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=99.93  E-value=2.4e-24  Score=207.02  Aligned_cols=306  Identities=17%  Similarity=0.143  Sum_probs=192.9

Q ss_pred             HHHHHHHCCCeEEEEecc-CCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcc
Q 013476           86 VALDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMT  164 (442)
Q Consensus        86 aA~~La~~G~~V~liEk~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (442)
                      +||+|+++|++|+|||+. .++.++|+++.|++++...........+.........+.+.+.... .....+ .....+.
T Consensus         1 ~A~~La~~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~-~~~G~L~   78 (381)
T TIGR03197         1 TAYSLARRGWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-GFPFDH-EWCGVLQ   78 (381)
T ss_pred             ChHHHHhCCCeeEEEeCCCcccccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCccc-ccCceEE
Confidence            599999999999999996 4788999999999876432211100000000000111111111110 000011 1111111


Q ss_pred             cCCchhhHHHHHHHHHHHHHHhccCCCC--cceecCHhhHHhhCCccccccccCCceeEEEeeCcccChHHHHHHHHHHH
Q 013476          165 PCFDWFEVVYYWVGLKMYDLVAGRHLLH--LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTA  242 (442)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  242 (442)
                      ......+..      .+.+.. +..+++  ..++++.+++...++..      ....+.+.+.++.++|..++..|.+.+
T Consensus        79 ~a~~~~~~~------~l~~~~-~~~~~~~~~~~~l~~~e~~~~~~~~------~~~gal~~~~~g~idp~~~~~~l~~~~  145 (381)
T TIGR03197        79 LAYDEKEAE------RLQKLL-EQLGFPEELARWVDAEQASQLAGIP------LPYGGLFFPQGGWLSPPQLCRALLAHA  145 (381)
T ss_pred             ecCChHHHH------HHHHHH-HhcCCCHHHheeCCHHHHHHhcCCC------CCCCceEeCCCcccChHHHHHHHHhcc
Confidence            111111111      111111 123433  24578888887776432      223344556789999999999999999


Q ss_pred             HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeC
Q 013476          243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLP  322 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~  322 (442)
                      ++ |++|+++++|.+|..+++  + +.|..   .+|  ..++||.||+|+|.|+..|.+.+    ..++.|++|+++.++
T Consensus       146 ~~-G~~i~~~~~V~~i~~~~~--~-~~v~t---~~g--~~~~a~~vV~a~G~~~~~l~~~~----~~pi~p~rg~~~~~~  212 (381)
T TIGR03197       146 GI-RLTLHFNTEITSLERDGE--G-WQLLD---ANG--EVIAASVVVLANGAQAGQLAQTA----HLPLRPVRGQVSHLP  212 (381)
T ss_pred             CC-CcEEEeCCEEEEEEEcCC--e-EEEEe---CCC--CEEEcCEEEEcCCcccccccccc----cCCccccccceeecc
Confidence            99 999999999999988764  4 23433   223  25899999999999998887752    346899999988876


Q ss_pred             CCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCC-----CCCeee
Q 013476          323 DYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR-----RTDVLS  396 (442)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~  396 (442)
                      ........+..+.   .+  .|++|. +|.+++|.+.+..  ..+..++.+.++.+++.+.+++ |.+.     +.++.+
T Consensus       213 ~~~~~~~~~~~~~---~~--~y~~p~~~g~~~iG~t~~~~--~~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~~~~~~  284 (381)
T TIGR03197       213 ATEALSALKTVLC---YD--GYLTPANNGEHCIGASYDRN--DDDLALREADHAENLERLAECL-PALAWASEVDISALQ  284 (381)
T ss_pred             CCCcccccCceEe---CC--ceecccCCCceEeecccCCC--CCCCCcCHHHHHHHHHHHHHhC-cccchhhccCccccC
Confidence            4321111122221   11  478886 4668899877653  2345667778899999999999 7776     678999


Q ss_pred             eeeeccccccCCCCCCCCCcccceeeEec---------------------------CCCeEEEecccc
Q 013476          397 AWSGIRPLAMDPSAKNTESISRDHVVCED---------------------------FPGLVTITGGKW  437 (442)
Q Consensus       397 ~~~G~r~~t~D~~~~~~~~~~~~~~i~~~---------------------------~~~~~~~~gg~~  437 (442)
                      .|+|+||+|||          +.|+|...                           .+|+++++|-.+
T Consensus       285 ~~~G~r~~t~D----------~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g  342 (381)
T TIGR03197       285 GRVGVRCASPD----------HLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGS  342 (381)
T ss_pred             ceEEEeccCCC----------cCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccc
Confidence            99999999999          57777654                           478999988543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.93  E-value=1.4e-23  Score=204.19  Aligned_cols=316  Identities=16%  Similarity=0.194  Sum_probs=187.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC-C-CeEEEEeccC-CCCCCc--cCCCCcccchhhhhHHhhhccCcchHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR-G-LRVGLVERED-FSSGTS--SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHAL  143 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~-G-~~V~liEk~~-~~~g~s--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (442)
                      +..+||||||||++|+++|++|++. + .+|+||||.. ++.++|  .++++.+|.+.....     ..+.......+..
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~-----y~~~kA~~~~~~~  117 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETN-----YTLEKARKVKRQA  117 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhc-----CCHHHHHHHHHHH
Confidence            4569999999999999999999996 3 6999999985 555455  456666665532110     0111111111111


Q ss_pred             HHHHHHHHhCCc-----ccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccc---c
Q 013476          144 EERKQVIRNAPH-----LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK---D  215 (442)
Q Consensus       144 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~---~  215 (442)
                      .....+......     .......+.......+.....   +.++.+. ..+. ..++++.+++.+++|.+.....   .
T Consensus       118 ~~~~~~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~---~~~~~~~-~~~~-~~e~ld~~el~e~eP~v~~~~~~~~~  192 (497)
T PTZ00383        118 DMLRNYLTKLPPSERDSIIFKMQKMVLGVGEKECEFLE---KRYPVFK-ELFP-SMQLLDKKEIHRVEPRVVLKNNHTLR  192 (497)
T ss_pred             HHHHHHHHHhcccccccceeeCCEEEEEECHHHHHHHH---HHHHHHH-ccCC-CeEEECHHHHHHhCcccccCcccccc
Confidence            111111111110     111111111122222222221   2233332 3333 4899999999999998721000   0


Q ss_pred             CCceeEEE-eeC-cccChHHHHHHHHHHHHH----cC--ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCE
Q 013476          216 RSLKGAVV-YYD-GQMNDSRLNVGLALTAAL----AG--AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV  287 (442)
Q Consensus       216 ~~~~~~~~-~~~-~~~~~~~l~~~l~~~~~~----~G--v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~  287 (442)
                      +...++.+ +.+ +.+|+..++..|.+.+++    +|  ++|+++++|++|.++++  .++.|.+.   .   ..+.||.
T Consensus       193 ~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~--~~~~V~T~---~---G~i~A~~  264 (497)
T PTZ00383        193 EEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND--SLYKIHTN---R---GEIRARF  264 (497)
T ss_pred             ccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC--CeEEEEEC---C---CEEEeCE
Confidence            12334444 545 579999999999999999    77  78999999999998753  44445442   2   2699999


Q ss_pred             EEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcE----EEEEec---CCcEEEccCCCC
Q 013476          288 VVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRV----VFMLPW---LGRTVAGTTDSD  360 (442)
Q Consensus       288 VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~---~g~~~~g~~~~~  360 (442)
                      ||+|+|+|+..|++++|+.....+.|++|.++.++.    .....+++.. +...    +...|+   ++.+++|++..+
T Consensus       265 VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~~~~~~----~~~~kVY~v~-~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~  339 (497)
T PTZ00383        265 VVVSACGYSLLFAQKMGYGLEYSCLPVAGSFYFSGN----ILNGKVYTVQ-NPALPFAAVHGDPDIIAKGKTRFGPTALP  339 (497)
T ss_pred             EEECcChhHHHHHHHhCCCCCCCEEecCceEEEcCh----hhcCceecCC-CCCCCCcCccCCCccCCCCeEEEccCccc
Confidence            999999999999999998777889999998877753    1222333311 1111    111122   456778888654


Q ss_pred             CC--CCC------------CCCC-----------CHHHH----------------HHHHHHhhhhcCCCCCCCCeeee--
Q 013476          361 TV--ITL------------LPEP-----------HEDEI----------------QFILDAISDYLNVKVRRTDVLSA--  397 (442)
Q Consensus       361 ~~--~~~------------~~~~-----------~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~--  397 (442)
                      ..  ..+            ....           .....                +.+++.+++++ |.+...++...  
T Consensus       340 ~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~-P~~~~~d~~~~~~  418 (497)
T PTZ00383        340 LPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIV-PSLTRKDLRYCVG  418 (497)
T ss_pred             chHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHHHHHHhC-CCCCHHHeeeccC
Confidence            21  000            0111           01111                23345566888 88887787763  


Q ss_pred             eeeccccccCC
Q 013476          398 WSGIRPLAMDP  408 (442)
Q Consensus       398 ~~G~r~~t~D~  408 (442)
                      +.|+|+..-|.
T Consensus       419 ~~GvR~Q~i~~  429 (497)
T PTZ00383        419 YGGVRPQLIDK  429 (497)
T ss_pred             CCceEEEEEEC
Confidence            56999999874

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.91  E-value=3.3e-22  Score=175.36  Aligned_cols=337  Identities=21%  Similarity=0.208  Sum_probs=209.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC----CCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATR----GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE  144 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (442)
                      ..|||||||||..|+++|++|.++    |++|+|+|+.+ ....++.-+.|.+.-.+...+    +....-  +..+++.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpE----nIqmSL--F~a~Flr  158 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPE----NIQMSL--FTAEFLR  158 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccch----hhhhhh--HHHHHHH
Confidence            469999999999999999999874    79999999997 444444444433322221111    111111  1223343


Q ss_pred             HHHHHHHh----CCcccc-cCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCce
Q 013476          145 ERKQVIRN----APHLSN-ALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK  219 (442)
Q Consensus       145 ~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  219 (442)
                      .....+..    ...+.. ....+..+ ...+......    ...+.++.|.. .+.++++++..++|++    +.+...
T Consensus       159 ~a~ehl~~~d~~~vdl~f~P~GyL~LA-~ee~ae~m~s----~~kvQ~e~GAk-~eLls~d~Lt~rfPwl----ntegVa  228 (509)
T KOG2853|consen  159 NAREHLGILDSEQVDLNFFPTGYLRLA-SEEEAEMMRS----NSKVQNELGAK-VELLSPDELTKRFPWL----NTEGVA  228 (509)
T ss_pred             HHHHhhccccCCCCCcccCCCceEEEc-chhhHHHHHH----hHHHHHhhcch-hcccCHHHHhhhCCcc----ccccee
Confidence            33332222    111111 00001111 1111111111    11222345654 7899999999999999    666554


Q ss_pred             eE-EE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEc---------CCC------CeEEEEEEEECCCCceEE
Q 013476          220 GA-VV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD---------EAS------NRIIGARIRNNLSGKEFD  282 (442)
Q Consensus       220 ~~-~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~---------~~g------~~v~gV~~~~~~~g~~~~  282 (442)
                      -+ +. ..+|++||..++..+.+.+...|+.+. +-+|+.++.+         ++|      .++.+|.++- .++..+.
T Consensus       229 La~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m-~d~~~r~  306 (509)
T KOG2853|consen  229 LASLGVEKEGWFDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRM-NDALARP  306 (509)
T ss_pred             eeecccccccccCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEec-CchhcCc
Confidence            33 32 458999999999999999999999985 5678887765         222      1456666663 4555678


Q ss_pred             EEcCEEEEccCCChHHHhhhhCCC-------CCCcccCCCeeEEEeCCCCCC-CCceEEeeecCCCcEEEEEec--CCcE
Q 013476          283 TYAKVVVNAAGPFCDSVRKLADQN-------VQPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPW--LGRT  352 (442)
Q Consensus       283 i~a~~VVlAtG~~s~~l~~~~g~~-------~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~--~g~~  352 (442)
                      +++..+|+|+|+||.+++++.|+.       ++.|+.|.|.+++++..+..| ...++++.    ...+|++..  .+.+
T Consensus       307 vk~al~V~aAGa~s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~~Pl~iD----psG~f~Rrdglg~nf  382 (509)
T KOG2853|consen  307 VKFALCVNAAGAWSGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLDTPLTID----PSGVFFRRDGLGGNF  382 (509)
T ss_pred             eeEEEEEeccCccHHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCCCCCCceeEC----CCccEEEecCCCCce
Confidence            999999999999999999998763       356789999888777654444 45555552    334777774  3456


Q ss_pred             EEccCCCCCCCC--CCCCCCHHH-HHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--C
Q 013476          353 VAGTTDSDTVIT--LLPEPHEDE-IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--P  427 (442)
Q Consensus       353 ~~g~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~  427 (442)
                      +.|-+....+.+  .+...+.+. .+.+...+..-+ |.++.+++...|+|++..-.         +..+.+|..||  .
T Consensus       383 l~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRV-P~fetakVqsaWaGyyD~Nt---------fD~ngViG~HP~y~  452 (509)
T KOG2853|consen  383 LCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRV-PAFETAKVQSAWAGYYDHNT---------FDDNGVIGEHPLYT  452 (509)
T ss_pred             ecccCCccccCCCccccccChHHHHhhhhHHHHhcc-cccceeeeeehhcccccccc---------cccCCcccCCccee
Confidence            665442211111  122333333 345666666666 88999999999999997632         22678888875  7


Q ss_pred             CeEEEeccccc
Q 013476          428 GLVTITGGKWT  438 (442)
Q Consensus       428 ~~~~~~gg~~~  438 (442)
                      +++.++|=.+-
T Consensus       453 Nly~atGFsgh  463 (509)
T KOG2853|consen  453 NLYMATGFSGH  463 (509)
T ss_pred             eeeeeeccccc
Confidence            78888774443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.84  E-value=2.4e-19  Score=177.52  Aligned_cols=193  Identities=13%  Similarity=0.169  Sum_probs=115.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCccc-chhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      .++||||||+|++|++||++|+++|++|+||||....++++..++|.+. .+..+.......   ...+.+++.+.....
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~---d~~~~~~~~~~~~~~  136 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIA---DSNDKFYEETLKGGG  136 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCC---CCHHHHHHHHHHhcC
Confidence            4699999999999999999999999999999999866666655544432 222222111111   111111111111000


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                            .         .........+........+|+. ..|++ +..+..      ...       ......+.+.++.
T Consensus       137 ------~---------~~d~~l~~~~~~~s~~~i~wl~-~~Gv~-~~~~~~------~~g-------~~~~r~~~p~~g~  186 (506)
T PRK06481        137 ------G---------TNDKALLRYFVDNSASAIDWLD-SMGIK-LDNLTI------TGG-------MSEKRTHRPHDGS  186 (506)
T ss_pred             ------C---------CCCHHHHHHHHhccHHHHHHHH-HcCce-Eeeccc------CCC-------CCCCceeccCCCC
Confidence                  0         0001111122223335566765 45554 221100      000       0011112222333


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      .....++..|.+.+++.|++++++++|++|+.++ | +|+||+++. .+++...+.||.||+|+|+|+.+
T Consensus       187 ~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g-~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n  253 (506)
T PRK06481        187 AVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD-G-KVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN  253 (506)
T ss_pred             CChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-C-EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence            4445688899999999999999999999998765 6 999999875 34455679999999999998753

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=99.82  E-value=1.2e-18  Score=150.77  Aligned_cols=284  Identities=15%  Similarity=0.099  Sum_probs=177.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-------CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRG-------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHA  142 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G-------~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (442)
                      +..+|+|||+|+.||++|+.+.+.+       .+|.|++-.....-+|....|++.+....-..  .   ....++....
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~--~---~~~~~w~k~t   76 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTP--Q---EINRQWGKDT   76 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCc--H---HHHHHHHHHH
Confidence            3479999999999999998888854       68999977665556666667766544211000  0   0011121222


Q ss_pred             HHHHHHHHH--hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCcee
Q 013476          143 LEERKQVIR--NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKG  220 (442)
Q Consensus       143 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  220 (442)
                      +.....+..  ..+..--.   +.+....++..........+..+     +..++.++..++. .+|.        ....
T Consensus        77 f~~l~~l~rs~~a~~aGV~---l~sg~~ls~~e~~~~~~~~w~di-----V~~fr~l~e~EL~-~f~~--------~~~~  139 (342)
T KOG3923|consen   77 FNYLAHLARSEEAGEAGVC---LVSGHILSDSESLDDQQRSWGDI-----VYGFRDLTERELL-GFPD--------YSTY  139 (342)
T ss_pred             HHHHHHHhccccccccceE---EeeeeeeccCCCchhhhhhHHhh-----hhhhhcCCHHHhc-CCCC--------cccc
Confidence            222111111  11100000   00000000000000000111111     1125666666664 3332        2233


Q ss_pred             EEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476          221 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR  300 (442)
Q Consensus       221 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~  300 (442)
                      +..+.....++..++..|.+.+.++|+++. ..+|.+|+.-.                   .-.+|.||+|||.++..|.
T Consensus       140 G~~~Tt~~sE~~~ylpyl~k~l~e~Gvef~-~r~v~~l~E~~-------------------~~~~DVivNCtGL~a~~L~  199 (342)
T KOG3923|consen  140 GIHFTTYLSEGPKYLPYLKKRLTENGVEFV-QRRVESLEEVA-------------------RPEYDVIVNCTGLGAGKLA  199 (342)
T ss_pred             ceeEEEeeccchhhhHHHHHHHHhcCcEEE-EeeeccHHHhc-------------------cCCCcEEEECCcccccccc
Confidence            455556667778999999999999999985 45565553211                   1257899999999998776


Q ss_pred             hhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHH
Q 013476          301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDA  380 (442)
Q Consensus       301 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  380 (442)
                      .      +..++|.||+++.++.   |+....++.   |....|++|-.+++.+|++.++  ...+.+.+++...+|++.
T Consensus       200 g------Dd~~yPiRGqVl~V~A---pWvkhf~~~---D~~~ty~iP~~~~V~lGg~~Q~--g~w~~ei~~~D~~dIl~r  265 (342)
T KOG3923|consen  200 G------DDDLYPIRGQVLKVDA---PWVKHFIYR---DFSRTYIIPGTESVTLGGTKQE--GNWNLEITDEDRRDILER  265 (342)
T ss_pred             C------CcceeeccceEEEeeC---CceeEEEEe---cCCccEEecCCceEEEcccccc--CcccCcCChhhHHHHHHH
Confidence            5      2349999999998864   455556664   2222699999999999999887  445688899999999999


Q ss_pred             hhhhcCCCCCCCCeeeeeeeccccccCCCC
Q 013476          381 ISDYLNVKVRRTDVLSAWSGIRPLAMDPSA  410 (442)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~  410 (442)
                      ..++. |.+...++.+.|+|+||..+--++
T Consensus       266 c~aL~-P~l~~a~ii~E~vGlRP~Rk~vRl  294 (342)
T KOG3923|consen  266 CCALE-PSLRHAEIIREWVGLRPGRKQVRL  294 (342)
T ss_pred             HHHhC-cccccceehhhhhcccCCCCceee
Confidence            99999 999999999999999999987554

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.81  E-value=2.9e-17  Score=152.38  Aligned_cols=248  Identities=16%  Similarity=0.161  Sum_probs=159.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCC--ccCCCCcccchhh---hhHH-hhhccCcc------
Q 013476           70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGT--SSRSTKLIHGGVR---YLEK-AVFNLDYG------  134 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~--s~~~~g~~~~~~~---~~~~-~~~~~~~~------  134 (442)
                      .++|||+|||||+|.+.++.|++.  .++|.|+||.+ ++..+  ..+|.|..|.+..   |-.. .-...+..      
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In   81 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN   81 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence            469999999999999999999986  78999999986 44333  3566777776542   2111 00001111      


Q ss_pred             -hHHHHHHHHHHHHHH--HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceec-CHhhHHhhCCccc
Q 013476          135 -QLKLVFHALEERKQV--IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYY-SAQESAELFPTLA  210 (442)
Q Consensus       135 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~p~~~  210 (442)
                       +++..++++......  ......++...+.+.-.....+..+..   +.++.+.+..-...+++. +.+++.++.|.+.
T Consensus        82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLk---kR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm  158 (488)
T PF06039_consen   82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLK---KRYEALKEHPLFPGMEFSEDPEQIAEWAPLVM  158 (488)
T ss_pred             HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHH---HHHHHHhcCCCCCCcEEccCHHHHHhhCCeec
Confidence             111112222211100  000112333333333333334444443   445555433344556666 5788889999874


Q ss_pred             cccccCC-ceeEEEeeCcccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCC-CeEEEEEEEECCCCceEEEEcCE
Q 013476          211 MKAKDRS-LKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEAS-NRIIGARIRNNLSGKEFDTYAKV  287 (442)
Q Consensus       211 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g-~~v~gV~~~~~~~g~~~~i~a~~  287 (442)
                      ....... ........+..+|-..+.+.|.+.+++. |++++++++|++|.+.++| |.|   .+.+..+++...++||.
T Consensus       159 ~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v---~~~~~~~~~~~~v~a~F  235 (488)
T PF06039_consen  159 EGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEV---KVKDLKTGEKREVRAKF  235 (488)
T ss_pred             CCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEE---EEEecCCCCeEEEECCE
Confidence            3322222 2333333455688899999999999988 9999999999999998877 655   55554677788999999


Q ss_pred             EEEccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCC
Q 013476          288 VVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPD  323 (442)
Q Consensus       288 VVlAtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~  323 (442)
                      |++.+|+++-.|++..|++.  .....|+.|+.++.+.
T Consensus       236 VfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n  273 (488)
T PF06039_consen  236 VFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKN  273 (488)
T ss_pred             EEECCchHhHHHHHHcCChhhcccCCCcccceEEecCC
Confidence            99999999999999999842  3456899999888764

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=99.79  E-value=4.4e-18  Score=146.36  Aligned_cols=314  Identities=15%  Similarity=0.125  Sum_probs=181.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC------CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATRG------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE  144 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G------~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (442)
                      ...|+|||||+.|+++||+|++.+      ..|+|+|+..+++++|+..+|++. .+ ........+..-++++..+.-.
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa-~w-c~~s~~~~La~lsfkLh~~Lsd   87 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA-KW-CQPSIIQPLATLSFKLHEELSD   87 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhH-hh-hCCcccchhhHHHHHHHHHHHH
Confidence            468999999999999999999987      789999999999999999998875 11 1111111222222222222111


Q ss_pred             HHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEe
Q 013476          145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY  224 (442)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  224 (442)
                      +.....+.   -.+.+....-..+|..          +. - .+.+ ...+|+.++...... .+           +-..
T Consensus        88 eydGvnnw---gYRaltTws~ka~~en----------~~-p-~k~p-egldWi~~e~v~~~s-si-----------G~t~  139 (380)
T KOG2852|consen   88 EYDGVNNW---GYRALTTWSCKADWEN----------TN-P-AKVP-EGLDWIQRERVQKCS-SI-----------GSTN  139 (380)
T ss_pred             hhcCcccc---cceeeeEEEEEeeccc----------CC-c-ccCC-cchhhhhhHHhhhhe-ec-----------cCCC
Confidence            11110000   0011100000000000          00 0 0000 012333332222111 00           1123


Q ss_pred             eCcccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          225 YDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       225 ~~~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      ..++++|..|++.++..+++.| |+++++ +|.++..+ ++ |+.+|..+. ..+.........+|+++|.|+..|+..+
T Consensus       140 ttaqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dE-k~-r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskllp~~  215 (380)
T KOG2852|consen  140 TTAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDE-KH-RINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLLPFT  215 (380)
T ss_pred             ccceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecc-cc-cccccchhh-hcCceEEeeeeEEEEecCCCchhhcccc
Confidence            4678999999999999999885 999876 57777633 35 887776542 2233456778999999999999998865


Q ss_pred             CCCCCCcccCCCeeEEEeCCCCCCCCceEEee--ecCCC-----cEEEEEecCCcEEEccCCCCCC---CCCCCCCCHHH
Q 013476          304 DQNVQPMICPSSGVHIVLPDYYSPEGMGLIVP--KTKDG-----RVVFMLPWLGRTVAGTTDSDTV---ITLLPEPHEDE  373 (442)
Q Consensus       304 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~p~~g~~~~g~~~~~~~---~~~~~~~~~~~  373 (442)
                      ++      ...+-..+.++....+-....++.  ...++     ...|.++....++.|.++....   ..++....++.
T Consensus       216 rI------sglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npek  289 (380)
T KOG2852|consen  216 RI------SGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEK  289 (380)
T ss_pred             cc------ceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeCHHH
Confidence            33      222223344443333211111110  01222     1245555545667777765532   23344567777


Q ss_pred             HHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEec
Q 013476          374 IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITG  434 (442)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~g  434 (442)
                      +.++.+.+..+. +.+.+..+...-+|+-|.+.+.         +-|+|...+-|+++++|
T Consensus       290 i~~Lk~~a~~v~-s~l~ks~v~~~qacfLP~sn~t---------g~PvIget~sg~yVaag  340 (380)
T KOG2852|consen  290 IIELKEMADLVS-SELTKSNVLDAQACFLPTSNIT---------GIPVIGETKSGVYVAAG  340 (380)
T ss_pred             HHHHHHHHHHhh-hhhccchhhhhhhccccccCCC---------CCceEeecCCceEEeec
Confidence            777777666665 6677777777788999999883         68999988789998887

>PRK07121 hypothetical protein; Validated

Probab=99.79  E-value=4.4e-18  Score=168.65  Aligned_cols=205  Identities=23%  Similarity=0.234  Sum_probs=119.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccc--hhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG--GVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      +.++||||||+|++|++||++|+++|++|+||||....++++..++|.+..  +...+.......   +.+.+.+.+...
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d---~~~~~~~~~~~~   94 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFED---SPENMYAYLRVA   94 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCC---CHHHHHHHHHHH
Confidence            456999999999999999999999999999999998777777777766532  333332221111   122222222211


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccc----cc---------c
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLA----MK---------A  213 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~----~~---------~  213 (442)
                      ...      .         ........+...+.+..+|+. ..|++........  ...+|.-.    ..         .
T Consensus        95 ~~~------~---------~d~~l~~~~~~~s~~~i~wl~-~~Gv~f~~~~~~~--~~~~p~~~~~~~~~g~~~~~~~~~  156 (492)
T PRK07121         95 VGP------G---------VDEEKLRRYCEGSVEHFDWLE-GLGVPFERSFFPE--KTSYPPNDEGLYYSGNEKAWPFAE  156 (492)
T ss_pred             hCC------C---------CCHHHHHHHHHccHHHHHHHH-HcCcEEEeccCCC--cccCCCCCcccccchhhcchhhhh
Confidence            100      0         001111222333345667775 4555411100000  00011000    00         0


Q ss_pred             ccCCceeEEEee-Cccc-ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEE
Q 013476          214 KDRSLKGAVVYY-DGQM-NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVN  290 (442)
Q Consensus       214 ~~~~~~~~~~~~-~~~~-~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVl  290 (442)
                      ............ .+.. ....++..|.+.+++.|++|++++++++|+.+++| +|+||+++.  +++...++| |.||+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~--~~~~~~i~a~k~VVl  233 (492)
T PRK07121        157 IAKPAPRGHRVQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG-RVVGVEARR--YGETVAIRARKGVVL  233 (492)
T ss_pred             ccCCcccceecCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC-CEEEEEEEe--CCcEEEEEeCCEEEE
Confidence            000000011111 1111 34678889999999999999999999999987657 999999864  455568999 99999


Q ss_pred             ccCCChH
Q 013476          291 AAGPFCD  297 (442)
Q Consensus       291 AtG~~s~  297 (442)
                      |||+|+.
T Consensus       234 AtGg~~~  240 (492)
T PRK07121        234 AAGGFAM  240 (492)
T ss_pred             CCCCcCc
Confidence            9999874

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.75  E-value=4.6e-17  Score=164.66  Aligned_cols=216  Identities=18%  Similarity=0.140  Sum_probs=123.7

Q ss_pred             CCccCCCChHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHH
Q 013476           48 DSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEK  126 (442)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~  126 (442)
                      .++|....+...+.++.   ++.++||||||+|++||+||+.|++.|++|+||||.. ++.+++..+.|.+.......  
T Consensus        15 ~~~~~~~~~~~~~~~~~---~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~--   89 (640)
T PRK07573         15 EEKWDRYKFHLKLVNPA---NKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQ--   89 (640)
T ss_pred             hhhhhhccccccccCCc---cccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhcc--
Confidence            46787887777766666   6778999999999999999999999999999999975 44344444433332111110  


Q ss_pred             hhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhC
Q 013476          127 AVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELF  206 (442)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  206 (442)
                         . ..++...+.+.......      .+         +.......+...+.+..+|+. ..|++.....+.......+
T Consensus        90 ---~-~~Ds~~~~~~d~~~~g~------~~---------~d~~lv~~l~~~s~~~i~wL~-~~GV~f~~~~~g~~~~~~~  149 (640)
T PRK07573         90 ---N-DGDSVYRLFYDTVKGGD------FR---------AREANVYRLAEVSVNIIDQCV-AQGVPFAREYGGLLANRSF  149 (640)
T ss_pred             ---c-cCCCHHHHHHHHHHhcC------CC---------CCHHHHHHHHHHHHHHHHHHH-hcCCccccCCCCceecccc
Confidence               0 01111111111111000      00         001111122333446677775 5676522111100000000


Q ss_pred             CccccccccCCceeEEEeeC--cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEE
Q 013476          207 PTLAMKAKDRSLKGAVVYYD--GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY  284 (442)
Q Consensus       207 p~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~  284 (442)
                      ..       ......++..+  |..-...+...|.+.+++.|++|++++.+++|+.++ | +|+||.+.+..++....+.
T Consensus       150 gg-------hs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g-~V~GV~~~~~~~g~~~~i~  220 (640)
T PRK07573        150 GG-------AQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVD-G-RARGIVARNLVTGEIERHT  220 (640)
T ss_pred             CC-------cccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeC-C-EEEEEEEEECCCCcEEEEE
Confidence            00       01111111111  111012233566667888899999999999999876 6 9999999763466666899


Q ss_pred             cCEEEEccCCChH
Q 013476          285 AKVVVNAAGPFCD  297 (442)
Q Consensus       285 a~~VVlAtG~~s~  297 (442)
                      ||.||+|||+|+.
T Consensus       221 AkaVVLATGG~g~  233 (640)
T PRK07573        221 ADAVVLATGGYGN  233 (640)
T ss_pred             CCEEEECCCCccc
Confidence            9999999999885

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.74  E-value=1.6e-16  Score=155.77  Aligned_cols=191  Identities=18%  Similarity=0.169  Sum_probs=113.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCC-CeEEEEeccCCCCCCccCCCCcccch-hhhhHHhhhccCcchHHHHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRG-LRVGLVEREDFSSGTSSRSTKLIHGG-VRYLEKAVFNLDYGQLKLVFHALEERKQVI  150 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~~~~g~s~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (442)
                      ||||||+|++|++||++|+++| ++|+||||....++.|..+++.+... ..........   ...+.+.+.+.....  
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~--   75 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIE---DSPELFIKDTLKGGR--   75 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCC---CCHHHHHHHHHHhcC--
Confidence            8999999999999999999999 99999999987777777766655332 2221111111   111122111111000  


Q ss_pred             HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccC
Q 013476          151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN  230 (442)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  230 (442)
                          ..         ........+........+|+.  .++. ++...   .  ..+      ..........+..+...
T Consensus        76 ----~~---------~~~~l~~~~~~~~~~~i~wl~--~~~~-~~~~~---~--~~~------~~~~~~~~~~~~~g~~~  128 (439)
T TIGR01813        76 ----GI---------NDPELVRILAEESADAVDWLQ--DGVG-ARLDD---L--IQL------GGHSVPRAHRPTGGAGS  128 (439)
T ss_pred             ----CC---------CCHHHHHHHHhccHHHHHHHH--hCCC-eeecc---c--ccc------CCcCCCccccCCCCCCC
Confidence                00         001111111222224455654  2322 11100   0  000      00001111122233445


Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...++..|.+.+++.|++|+++++|++|+.++++ +|+||++.+ .+++...+.+|.||+|||+++.
T Consensus       129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQG-TVVGVVVKG-KGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCC-cEEEEEEEe-CCCeEEEEecceEEEecCCCCC
Confidence            5778999999999999999999999999987667 999999875 4444456789999999999886

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.73  E-value=1.2e-16  Score=155.80  Aligned_cols=200  Identities=23%  Similarity=0.207  Sum_probs=110.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchh-hhhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-RYLEKAVFNLDYGQLKLVFHALEERKQVIR  151 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (442)
                      ||||||+|++|++||+.|+++|++|+||||....++++..+.+.+.... ..+.....   .++...+.+.+.+..    
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~----   73 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGI---EDSPEEFFQDIMAAG----   73 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTT---TCHHHHHHHHHHHHT----
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccc---cccccccceeeeccc----
Confidence            8999999999999999999999999999999865556655555443221 11111100   011111111111111    


Q ss_pred             hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEe--eC---
Q 013476          152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY--YD---  226 (442)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~---  226 (442)
                        ...         ........+.....+..+|+. ..+++.....+.     .+.....  ...........  .+   
T Consensus        74 --~~~---------~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~g-----~~~~~~~--g~~~~~~~~~~~~~~~~~  134 (417)
T PF00890_consen   74 --GGL---------NDPDLVRAFVENSPEAIDWLE-ELGVPFRRDEDG-----PFAPTPF--GGHSPRWRSPPGNPDPPF  134 (417)
T ss_dssp             --TT----------S-HHHHHHHHHHHHHHHHHHH-HTT--B-BGTTS-----SBCEEEE--TTESSTEEEEESSTTSSS
T ss_pred             --ccc---------cccchhhhhhhcccceehhhh-hhcccccccccc-----ccccccc--CCccccceeeeccccccc
Confidence              000         011122223344456677776 335541110000     0000000  00000100111  01   


Q ss_pred             -cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476          227 -GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR  300 (442)
Q Consensus       227 -~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~  300 (442)
                       ....-..++..|.+.++++|++|++++++++|+.++ + +|+||++++..+++..+|+|+.||+|||+++..++
T Consensus       135 ~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~  207 (417)
T PF00890_consen  135 GGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITED-G-RVTGVVAENPADGEFVRIKAKAVILATGGFGGELL  207 (417)
T ss_dssp             HCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-T-EEEEEEEEETTTCEEEEEEESEEEE----BGGHHH
T ss_pred             cccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-C-ceeEEEEEECCCCeEEEEeeeEEEeccCccccccc
Confidence             011346788999999999999999999999999986 6 99999999656777788999999999999996333

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.72  E-value=3.1e-16  Score=157.13  Aligned_cols=196  Identities=15%  Similarity=0.066  Sum_probs=114.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++|++||+.+++.|++|+||||....++.+..+.|.+.....  ...   ...++.+.+.+.......
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~--~~~---~~~Ds~e~~~~d~~~~g~   77 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIP--GNS---DPNDNPDYMTYDTVKGGD   77 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhcc--ccC---CCcccHHHHHHHHHHhhc
Confidence            466999999999999999999999999999999997555555444433321100  000   001122222111111111


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                      .               .........+...+.+..+|+. .+|++....-+.......+..       .......+..  .
T Consensus        78 ~---------------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~~~~--~  132 (566)
T PRK06452         78 Y---------------LVDQDAAELLSNKSGEIVMLLE-RWGALFNRQPDGRVAVRYFGG-------QTYPRTRFVG--D  132 (566)
T ss_pred             c---------------CCCHHHHHHHHHHHHHHHHHHH-HCCCccccCCCCcEeccCCcC-------ccCCeeEecC--C
Confidence            0               0011112233344456677775 567652111110000000000       0111111111  1


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .....++..|.+.+++.|+++++++.+++|+.++ | +|+||++.+..+++...+.||.||+|||+++
T Consensus       133 ~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        133 KTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDN-K-KVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            1234678888888888899999999999999875 7 9999999864456556899999999999988

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.72  E-value=3.3e-16  Score=157.77  Aligned_cols=203  Identities=13%  Similarity=0.062  Sum_probs=117.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++||+||++|++.|++|+||||....++++..+.|.+......       ...++.+...........
T Consensus        10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~-------~~~Ds~e~~~~d~~~~g~   82 (598)
T PRK09078         10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGN-------MGEDDWRWHMYDTVKGSD   82 (598)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCC-------CCCCCHHHHHHHHHHhcc
Confidence            3569999999999999999999999999999999876555555554444322110       011222221111111000


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceec-CHhhHHhhCCccccc-cccCCceeEEEeeC
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYY-SAQESAELFPTLAMK-AKDRSLKGAVVYYD  226 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~  226 (442)
                            .+         +.......+...+.+..+|+. .+|++ +... +.......+...... ...+......+..+
T Consensus        83 ------~~---------~d~~lv~~l~~~s~~~i~~L~-~~Gv~-f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d  145 (598)
T PRK09078         83 ------WL---------GDQDAIEYMCREAPAAVYELE-HYGVP-FSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAAD  145 (598)
T ss_pred             ------CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCc-ceecCCCceeecccCceecccCCCCccceeEecCC
Confidence                  00         011112223334446667775 47765 2211 110000000000000 00000011111111


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                        ..-..++..|.+.+++.|++|++++.+++|+.+++| +|+||++.+..+|+...+.||.||+|||+++..
T Consensus       146 --~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        146 --RTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGG-VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             --CCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence              112467888999898899999999999999987657 999999865456766789999999999999853

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.71  E-value=4.6e-16  Score=156.98  Aligned_cols=203  Identities=12%  Similarity=0.020  Sum_probs=118.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||||||+|++||+||+++++.|++|+||||....++++..+.|.+......       ...++.+........... 
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~-------~~~Ds~e~~~~D~~~~g~-   99 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGN-------MTEDDWRWHAYDTVKGSD-   99 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecC-------CCCCCHHHHHHHHHHHhC-
Confidence            469999999999999999999999999999999986666555554444322110       001122221111111111 


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccc-cCCceeEEEeeCcc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK-DRSLKGAVVYYDGQ  228 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~  228 (442)
                           .         .+.......+...+.+..+|+. .+|++.....+.......+........ ........+.  ..
T Consensus       100 -----~---------~~d~~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~--~d  162 (617)
T PTZ00139        100 -----W---------LGDQDAIQYMCREAPQAVLELE-SYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAA--AD  162 (617)
T ss_pred             -----C---------CCCHHHHHHHHHHHHHHHHHHH-hcCCceEeCCCCcEeecccCcccccccCCCccceeeec--CC
Confidence                 0         0111122233444556777775 577762211111000000000000000 0000001111  01


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      -.-..++..|.+.+++.|+++++++.+++|+.+++| +|.||.+.+..+|+...+.||.||+|||+++..
T Consensus       163 ~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        163 RTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDG-ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             CcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCC-EEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence            123578889999999999999999999999985447 999999865457777789999999999999753

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.71  E-value=6.3e-16  Score=154.18  Aligned_cols=206  Identities=22%  Similarity=0.250  Sum_probs=118.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccc-hhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG-GVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +.++||||||+| +|++||+.+++.|++|+||||.+..+|++..++|.+.. +...+......   .+.+.+.+++....
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~---ds~e~~~~y~~~~~   89 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAG---DTLERARTYLDSVV   89 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcc---hhHHHHHHHHHHHh
Confidence            456999999999 89999999999999999999998777777777665543 33333222211   12223333333221


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCH-hhHHhhCCcc---ccccccCCc-----
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSA-QESAELFPTL---AMKAKDRSL-----  218 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~p~~---~~~~~~~~~-----  218 (442)
                      ..               .........+...+.++.+|+++..++. +.+... .......|.-   .+...+..+     
T Consensus        90 ~~---------------~~~~~li~~~~~~~~~~i~wl~~~~gv~-~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~  153 (564)
T PRK12845         90 GG---------------SAPAERSAAFLDNGSATVDMLRRTTPMR-FFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVL  153 (564)
T ss_pred             CC---------------CCCHHHHHHHHHhhHHHHHHHHhcCCce-EEECCCCCCCCCCCCCCCCCCCcccCCCCChhHh
Confidence            10               0112223344555667788886544432 111100 0000000000   000000000     


Q ss_pred             -------eeE------EEee------------------------------------C-cccChHHHHHHHHHHHHHcCce
Q 013476          219 -------KGA------VVYY------------------------------------D-GQMNDSRLNVGLALTAALAGAA  248 (442)
Q Consensus       219 -------~~~------~~~~------------------------------------~-~~~~~~~l~~~l~~~~~~~Gv~  248 (442)
                             ...      ..+.                                    . ....-..++..|.+.+++.|++
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv~  233 (564)
T PRK12845        154 GEYRPRLRPGVMEVSIPMPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGIP  233 (564)
T ss_pred             hhHHHhcCCccccccccccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCCE
Confidence                   000      0000                                    0 0011245677888889999999


Q ss_pred             EecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHH
Q 013476          249 VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS  298 (442)
Q Consensus       249 i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~  298 (442)
                      |++++++++|+.++ | +|+||++..  +++...+.| |.||||||+|+.+
T Consensus       234 i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n  280 (564)
T PRK12845        234 IWTETSLVRLTDDG-G-RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHD  280 (564)
T ss_pred             EEecCEeeEEEecC-C-EEEEEEEEE--CCcEEEEEcCCEEEEecCCcccc
Confidence            99999999999764 7 999998874  444556777 7899999999864

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.71  E-value=6.4e-16  Score=155.25  Aligned_cols=203  Identities=13%  Similarity=0.045  Sum_probs=117.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||||||+|++||+||+.|++.|++|+||||....++++..+.|.+......       ...++.+...+........
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~-------~~~Ds~e~~~~D~~~~g~~   78 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGN-------THEDNWEWHMYDTVKGSDY   78 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCC-------CCCCCHHHHHHHHHHHhCC
Confidence            459999999999999999999999999999999975555554443333211100       0112222222221111110


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  229 (442)
                                     .+.......+...+.+..+|+. .+|++....-+.......+...............++..+  -
T Consensus        79 ---------------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~  140 (588)
T PRK08958         79 ---------------IGDQDAIEYMCKTGPEAILELE-HMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD--R  140 (588)
T ss_pred             ---------------CCCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeecccccccccccccccceeEecCC--C
Confidence                           0111122233444556777875 577762111110000000000000000000011111111  1


Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      .-..++..|.+.+++.|+++++++.+++|+.+++| +|+||.+.+..+++...+.||.||+|||+++..
T Consensus       141 ~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        141 TGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDG-AVVGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             CHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCC-EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            22567888888888899999999999999987557 999999865456776789999999999999853

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.71  E-value=5.8e-16  Score=156.19  Aligned_cols=204  Identities=12%  Similarity=0.033  Sum_probs=117.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++||+||++|++.|++|+||||..+.+++|..+.|.+......       ...++.+...+.......
T Consensus        48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~-------~~~Ds~e~~~~Dt~~~g~  120 (635)
T PLN00128         48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-------MTEDDWRWHMYDTVKGSD  120 (635)
T ss_pred             eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCC-------CCCCCHHHHHHHHHHhhC
Confidence            3459999999999999999999999999999999976665555554443321110       011222222211111111


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC-CceeEEEeeCc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-SLKGAVVYYDG  227 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~  227 (442)
                      .               .+.......+...+.+..+|+. .+|++....-+.......+.....+.... ......+  ..
T Consensus       121 ~---------------~~d~~lv~~l~~~s~~~i~~L~-~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~--~~  182 (635)
T PLN00128        121 W---------------LGDQDAIQYMCREAPKAVIELE-NYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCAC--AA  182 (635)
T ss_pred             C---------------CCCHHHHHHHHHhHHHHHHHHH-hCCCccccCCCCceeeccccccccccCCCcceeeeec--cC
Confidence            0               0111112223334446667775 56765221111000000000000000000 0000000  11


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      ...-..++..|.+.+++.|++|+.++.+++|+.+++| +|.||.+.+..+|+...+.||.||+|||+++..
T Consensus       183 d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        183 DRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDG-ACQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCC-EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            1123568889999888899999999999999987557 999999876456777789999999999999854

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.71  E-value=6.9e-16  Score=152.35  Aligned_cols=189  Identities=22%  Similarity=0.199  Sum_probs=109.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC--CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF--SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      .++||||||+|++|++||++|+++|.+|+||||...  .++++..+.|+....... ....  ......+.+++.+....
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~   79 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAP-QDVL--VGAYPEEEFWQDLLRVT   79 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCc-hhhc--cccccHHHHHHHHHHhh
Confidence            459999999999999999999999999999999863  456666665532111100 0000  00011111222221111


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      .      ..         ........+.....+..+|+. ..|++ +........   .+        ..  ....+..+
T Consensus        80 ~------~~---------~~~~~~~~~~~~s~~~~~wl~-~~Gv~-~~~~~~~~~---~~--------~~--~~~~~~g~  129 (466)
T PRK08274         80 G------GR---------TDEALARLLIRESSDCRDWMR-KHGVR-FQPPLSGAL---HV--------AR--TNAFFWGG  129 (466)
T ss_pred             C------CC---------CCHHHHHHHHHcCHHHHHHHH-hCCce-EeecCCCcc---cc--------CC--CCeeecCC
Confidence            0      00         000111112222234556664 45554 221110000   00        00  00111111


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                         ...++..|.+.+++.|++++++++|++|+.++ + +|+||++.+ .+++...++||.||+|||++..
T Consensus       130 ---g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g-~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        130 ---GKALVNALYRSAERLGVEIRYDAPVTALELDD-G-RFVGARAGS-AAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             ---HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-C-eEEEEEEEc-cCCceEEEECCEEEECCCCCCC
Confidence               35688889999999999999999999999875 6 999998864 4555668999999999999764

>PRK12839 hypothetical protein; Provisional

Probab=99.70  E-value=1e-15  Score=153.10  Aligned_cols=69  Identities=26%  Similarity=0.300  Sum_probs=55.8

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      +++..++..|.+.+++.|++|++++++++|+.+++| +|+||++.+ .++....+.+|.||+|||+|+.+.
T Consensus       211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g-~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~  279 (572)
T PRK12839        211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNG-RVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDV  279 (572)
T ss_pred             ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCC-cEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCH
Confidence            356778889999999999999999999999887557 999999875 455433344599999999998643

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.70  E-value=6.8e-16  Score=154.92  Aligned_cols=67  Identities=27%  Similarity=0.343  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcC-EEEEccCCChH--HHhhh
Q 013476          233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD--SVRKL  302 (442)
Q Consensus       233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~-~VVlAtG~~s~--~l~~~  302 (442)
                      .++..|.+.+++.|++|++++++++|+.+++| +|+||+++.  +++...++|+ .||||||+|+.  .+++.
T Consensus       214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g-~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        214 SLVARLRLALKDAGVPLWLDSPMTELITDPDG-AVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HHHHHHHHHHHhCCceEEeCCEEEEEEECCCC-cEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            35556777888889999999999999998668 999999864  5566779996 79999999984  44443

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.69  E-value=7.2e-16  Score=165.87  Aligned_cols=207  Identities=22%  Similarity=0.252  Sum_probs=122.2

Q ss_pred             hHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCccc-chhhhhHHhhhccCcc
Q 013476           56 RVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYLEKAVFNLDYG  134 (442)
Q Consensus        56 ~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~~~  134 (442)
                      ++....+|.   ++.++||||||+|.+|++||+++++.|++|+||||....+|++..+++.+. .+.+.+......   +
T Consensus       397 ~~i~~~~i~---~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~---D  470 (1167)
T PTZ00306        397 AEMRKKRIA---GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVL---D  470 (1167)
T ss_pred             ccccccccc---cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhccc---c
Confidence            344456666   788999999999999999999999999999999999766666655544332 233222211110   1


Q ss_pred             hHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccc
Q 013476          135 QLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK  214 (442)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  214 (442)
                      ..+.+.+...      ....   .     ..........+...+.+..+|+. ..|++ +.....      +..      
T Consensus       471 ~~~~~~~d~~------~~~~---~-----~~~d~~lv~~~~~~s~e~idwL~-~~Gv~-f~~~~~------~gg------  522 (1167)
T PTZ00306        471 GGKFFERDTH------LSGK---G-----GHCDPGLVKTLSVKSADAISWLS-SLGVP-LTVLSQ------LGG------  522 (1167)
T ss_pred             cHHHHHHHHH------Hhcc---C-----CCCCHHHHHHHHHhhHHHHHHHH-HcCCC-ceeeec------cCC------
Confidence            1111111100      0000   0     00111222334444556778886 56665 322110      000      


Q ss_pred             cCCceeEEEee---Cccc--ChHHHHHHHHHHHHH---cCceEecCeEEEEEEEcCC--------CCeEEEEEEEEC--C
Q 013476          215 DRSLKGAVVYY---DGQM--NDSRLNVGLALTAAL---AGAAVLNHAEVISLIKDEA--------SNRIIGARIRNN--L  276 (442)
Q Consensus       215 ~~~~~~~~~~~---~~~~--~~~~l~~~l~~~~~~---~Gv~i~~~~~v~~l~~~~~--------g~~v~gV~~~~~--~  276 (442)
                       ..........   .+..  ....++..|.+.+++   .|++|++++++++|+.+++        + +|+||++++.  .
T Consensus       523 -~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~-~V~Gv~~~~~~~~  600 (1167)
T PTZ00306        523 -ASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREI-RVTGVRYKQASDA  600 (1167)
T ss_pred             -CCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccc-eEEEEEEEecccC
Confidence             0000111111   1111  124466777777665   4999999999999998742        3 8999999862  1


Q ss_pred             CCceEEEEcCEEEEccCCChHH
Q 013476          277 SGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       277 ~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      +|+...++||.||||||+|+.+
T Consensus       601 ~g~~~~i~AkaVILATGGf~~N  622 (1167)
T PTZ00306        601 SGQVMDLLADAVILATGGFSND  622 (1167)
T ss_pred             CCcEEEEEeceEEEecCCcccC
Confidence            6666789999999999999974

>PLN02815 L-aspartate oxidase

Probab=99.69  E-value=1.3e-15  Score=152.34  Aligned_cols=194  Identities=15%  Similarity=0.117  Sum_probs=114.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      ++.++||||||+|++||+||+.|++.| +|+||||....+++|..+.|.+.....         ..++.+.+.+......
T Consensus        26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~---------~~Ds~e~~~~d~~~~g   95 (594)
T PLN02815         26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLD---------PSDSVESHMRDTIVAG   95 (594)
T ss_pred             cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCC---------CCCCHHHHHHHHHHhc
Confidence            355699999999999999999999999 999999998766666655544332110         0112222222111111


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceec-CHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYY-SAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      .      .         .+.......+...+.+..+|+. .+|++ +..- +..-....+..       ......++.  
T Consensus        96 ~------~---------~~d~~lv~~~~~~s~e~i~~L~-~~Gv~-F~~~~~g~~~~~~~gg-------~s~~R~~~~--  149 (594)
T PLN02815         96 A------F---------LCDEETVRVVCTEGPERVKELI-AMGAS-FDHGEDGNLHLAREGG-------HSHHRIVHA--  149 (594)
T ss_pred             c------C---------CCcHHHHHHHHHHHHHHHHHHH-HhCCe-eeecCCCCccccCCCC-------CccCceeec--
Confidence            0      0         0111122233444456677775 56765 2211 00000000000       000011111  


Q ss_pred             cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCe--EEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNR--IIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~--v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +......++..|.+.++++ |++|++++.+++|+.+++|.+  |+||++.+..+++...+.||.||||||+++.
T Consensus       150 ~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        150 ADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            1122356788888888765 899999999999998643313  8999987545676678899999999999984

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.69  E-value=2.3e-15  Score=151.55  Aligned_cols=203  Identities=13%  Similarity=0.088  Sum_probs=115.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      ++.++||||||+|++||+||+.|++.|++|+||||....++.+..+.|.+.......       ..+..+..........
T Consensus         9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~-------~~ds~~~~~~dt~~~g   81 (591)
T PRK07057          9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNM-------SEDNWHYHFYDTIKGS   81 (591)
T ss_pred             ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccc-------cccChhHhHHHHHHhc
Confidence            356699999999999999999999999999999998765555555544433221100       0111111111100000


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccCCceeEEEeeC
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                            ..+         +.......+...+.+..+|+. ..|++ +......... ..+................+.  
T Consensus        82 ------~~~---------~d~~~v~~~~~~a~~~i~~L~-~~Gv~-f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~--  142 (591)
T PRK07057         82 ------DWL---------GDQDAIEFMCREAPNVVYELE-HFGMP-FDRNADGTIYQRPFGGHTANYGEKPVQRACAA--  142 (591)
T ss_pred             ------CCC---------CCHHHHHHHHHHHHHHHHHHH-hcCCc-ceeCCCCcEeeeccCCccccccCCccceeeec--
Confidence                  000         011112223334445667765 56665 2211000000 000000000000001111111  


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +...-..++..|.+.+.+.|+++++++.+++|+.+++| +|.||++.+..+++...+.||.||+|||+++.
T Consensus       143 ~~~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  212 (591)
T PRK07057        143 ADRTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADG-DVLGVTALEMETGDVYILEAKTTLFATGGAGR  212 (591)
T ss_pred             CCCChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCC-eEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence            11112468888988888899999999999999987557 99999986534666567899999999999885

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.69  E-value=2e-15  Score=151.89  Aligned_cols=196  Identities=15%  Similarity=0.058  Sum_probs=113.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      +.+||||||+|++||+||+.|+++|++|+||||....+++|..+.|.+......   ...   .++.+.+.+....... 
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~---~~~---~Ds~e~~~~d~~~~g~-   74 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNT---KGE---GDSPWIHFDDTVYGGD-   74 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCc---CCC---CCCHHHHHHHHHHhcC-
Confidence            458999999999999999999999999999999987666666665544322110   000   1111111111111110 


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  229 (442)
                           .+         +.......+...+.+..+|+. .+|++....-+.......+..       .......+  .+..
T Consensus        75 -----~~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~R~~~--~~~~  130 (589)
T PRK08641         75 -----FL---------ANQPPVKAMCEAAPGIIHLLD-RMGVMFNRTPEGLLDFRRFGG-------TLHHRTAF--AGAT  130 (589)
T ss_pred             -----Cc---------CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCcEeeeccCC-------eecccccc--cCCC
Confidence                 00         011112223333445666765 566652111000000000000       00000001  1112


Q ss_pred             ChHHHHHHHHHHHHHcC----ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          230 NDSRLNVGLALTAALAG----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~G----v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ....++..|.+.+++.+    ++++.++.+++|+.+++| +|+||++.+..+++...+.||.||+|||+++.
T Consensus       131 tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  201 (589)
T PRK08641        131 TGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEG-VCRGIVAQDLFTMEIESFPADAVIMATGGPGI  201 (589)
T ss_pred             cHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCC-EEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence            34567788887776543    789999999999986557 99999998744565567899999999999985

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.68  E-value=2.7e-15  Score=149.70  Aligned_cols=195  Identities=16%  Similarity=0.109  Sum_probs=113.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++||+||+.|++.|++|+||||....+++|..+.|.+.....         ..++.+.+.+.......
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~---------~~ds~e~~~~d~~~~g~   84 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLD---------PGDSPEAHVADTLVAGA   84 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccC---------CCCCHHHHHHHHHHhcC
Confidence            345999999999999999999999999999999998666666555443322110         01111111111111110


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                            .+         +.......+...+.+..+|+. .+|++.....+..-....+..       .......+ ..+.
T Consensus        85 ------g~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~G~~~~~~~~g-------~~~~r~~~-~~~d  140 (541)
T PRK07804         85 ------GL---------CDPDAVRSLVAEGPRAVRELV-ALGARFDESPDGRWALTREGG-------HSRRRIVH-AGGD  140 (541)
T ss_pred             ------CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCcEeeeccCC-------eecCeeEe-cCCC
Confidence                  00         011112223333445667775 466652111010000000000       00001111 1111


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..-..+...|.+.+++.|+++++++.|++|+.+++| +|+||.+.+.   .++....+.||.||+|||+++.
T Consensus       141 ~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        141 ATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG-AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC-eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            233568889999998999999999999999987657 9999988631   1122357899999999999884

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.67  E-value=3.9e-15  Score=149.06  Aligned_cols=194  Identities=21%  Similarity=0.197  Sum_probs=111.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC-CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      ++.++||||||+|++|++||+.+ +.|++|+||||... .+|++..+.|.+.....         ..++.+...+.+...
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~---------~~d~~~~~~~d~~~~   73 (543)
T PRK06263          4 EIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLN---------PEDSFEKHFEDTMKG   73 (543)
T ss_pred             ceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCC---------CCCCHHHHHHHHHHH
Confidence            35669999999999999999999 99999999999864 34555554443322110         011211111111111


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      ...               .........+...+.+..+|+. .+|++ +..-....... .+.     .........+.  
T Consensus        74 ~~~---------------~~d~~lv~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~~-~~~-----~g~~~~r~~~~--  128 (543)
T PRK06263         74 GAY---------------LNDPKLVEILVKEAPKRLKDLE-KFGAL-FDRTEDGEIAQ-RPF-----GGQSFNRTCYA--  128 (543)
T ss_pred             hcC---------------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-ceeCCCCceee-ccc-----CCeEcCeEEEC--
Confidence            100               0001111222333445666765 56665 21100000000 000     00000011111  


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +......++..|.+.+++.|+++++++.+++|+.++++ +|+||.+.+..+++...++||.||+|||+++.
T Consensus       129 ~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        129 GDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENR-EVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCc-EEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            11123567888888888899999999999999987755 69999886534566668999999999999874

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.67  E-value=2.6e-15  Score=152.03  Aligned_cols=196  Identities=19%  Similarity=0.131  Sum_probs=113.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++|++||+.|++.|++|+||||....+++|..+.|.+........      ..++.+...+.......
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~------~~ds~~~~~~D~~~~g~   79 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVN------PKDNWQVHFRDTMRGGK   79 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCC------CCCCHHHHHHHHHHHhc
Confidence            456999999999999999999999999999999998666666655554433221100      00111111111111110


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccCCceeEEEeeCc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      .      +         ........+...+.+..+|+. .+|++ +.......+. ..+..       ......++.  +
T Consensus        80 ~------l---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~~~~~gg-------~~~~r~~~~--~  133 (626)
T PRK07803         80 F------L---------NNWRMAELHAKEAPDRVWELE-TYGAL-FDRTKDGRISQRNFGG-------HTYPRLAHV--G  133 (626)
T ss_pred             c------C---------CcHHHHHHHHHHhHHHHHHHH-HCCCc-eEecCCCceeeeecCC-------cccCeEEec--C
Confidence            0      0         000111112223334556664 56765 2211100000 00000       001111111  1


Q ss_pred             ccChHHHHHHHHHHHHHc--------C-----ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          228 QMNDSRLNVGLALTAALA--------G-----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~--------G-----v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      ......++..|.+.+++.        |     +++++++.|++|+.++ | +|.||.+.+..+++...+.||.||+|||+
T Consensus       134 ~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG  211 (626)
T PRK07803        134 DRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-G-RIAGAFGYWRESGRFVLFEAPAVVLATGG  211 (626)
T ss_pred             CCcHHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence            112356778888877766        7     9999999999999865 6 99999876545666668999999999999


Q ss_pred             ChHH
Q 013476          295 FCDS  298 (442)
Q Consensus       295 ~s~~  298 (442)
                      ++..
T Consensus       212 ~~~~  215 (626)
T PRK07803        212 IGKS  215 (626)
T ss_pred             ccCC
Confidence            7743

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.67  E-value=3e-15  Score=148.67  Aligned_cols=210  Identities=20%  Similarity=0.205  Sum_probs=112.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCC--cccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTK--LIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      .++||||||+| +|++||++|++.|++|+||||....++++..+.+  ++.+....+......   ...+...+.+....
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~   81 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTD---DTIEDALEYYHAVV   81 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcc---hHHHHHHHHHHHHh
Confidence            46999999999 9999999999999999999999865566544433  333322222111000   11111111111110


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCcc--c--cccccCC------
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTL--A--MKAKDRS------  217 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~--~--~~~~~~~------  217 (442)
                                ...     ........+...+....+|+.+..++. ++...........|..  .  ++.....      
T Consensus        82 ----------~~~-----~~~~l~~~~~~~s~~~i~wl~~~~Gv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (513)
T PRK12837         82 ----------GDR-----TPRDLQETYVRGGAPLIEYLEQDEHFE-FAELPWPDYFGKAPKARADGQRHIVPKPLPAAAL  145 (513)
T ss_pred             ----------ccc-----CCHHHHHHHHHHHHHHHHHHHhCCCce-eeecCCCCcCCCCCCcccCCcceeecCCCChHHh
Confidence                      000     011122334445566778876444554 2211000000000000  0  0000000      


Q ss_pred             ------ceeEEEee-Ccc------cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEE
Q 013476          218 ------LKGAVVYY-DGQ------MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDT  283 (442)
Q Consensus       218 ------~~~~~~~~-~~~------~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i  283 (442)
                            ..+.+... .+.      .....++..|++.+.+. |++|+++++|++|+.++ | +|+||++..  +++...+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g-~v~Gv~~~~--~g~~~~i  221 (513)
T PRK12837        146 GELREQIRGPLDTERLGAPPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVED-G-RVVGAVVER--GGERRRV  221 (513)
T ss_pred             chhHHhccCccchhhhccCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-C-EEEEEEEEE--CCcEEEE
Confidence                  00000000 000      01235677777776664 99999999999999875 6 999999864  5666789


Q ss_pred             EcC-EEEEccCCChH--HHhhhh
Q 013476          284 YAK-VVVNAAGPFCD--SVRKLA  303 (442)
Q Consensus       284 ~a~-~VVlAtG~~s~--~l~~~~  303 (442)
                      +|+ .||||||+|..  .+++.+
T Consensus       222 ~A~k~VIlAtGG~~~n~~m~~~~  244 (513)
T PRK12837        222 RARRGVLLAAGGFEQNDDMRARY  244 (513)
T ss_pred             EeCceEEEeCCCccCCHHHHHHh
Confidence            995 89999999864  344444

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.67  E-value=4.8e-15  Score=149.18  Aligned_cols=69  Identities=28%  Similarity=0.341  Sum_probs=57.6

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHHHhh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSVRK  301 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~l~~  301 (442)
                      +++..++..|.+.+++.|++|+++++|++|+.++ | +|+||++++  ++....++| |.||+|||+|+.++..
T Consensus       214 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g-~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~  283 (581)
T PRK06134        214 VNGNALVARLLKSAEDLGVRIWESAPARELLRED-G-RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPAR  283 (581)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-C-EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence            4567788999999999999999999999999875 6 999999875  333457899 9999999999975544

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.67  E-value=5e-15  Score=150.25  Aligned_cols=201  Identities=22%  Similarity=0.208  Sum_probs=114.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++||+||+.|+++|++|+||||.....+.|..+.|.+......   .... ..++.+..+........
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~---~~~g-~~Ds~e~~~~Dt~k~~~   78 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGN---AVKG-EGDNEDVHFADTVKGSD   78 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccc---cccC-CCCCHHHHHHHHHHhcC
Confidence            4569999999999999999999999999999999976554444333222111000   0000 01122221111111110


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHh--------hH-----HhhCCcccccccc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQ--------ES-----AELFPTLAMKAKD  215 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~-----~~~~p~~~~~~~~  215 (442)
                            .         .+.......+...+.+..+|+. .+|++.....+..        ..     .+....+    ..
T Consensus        79 ------~---------~~D~~~vr~~v~~sp~~i~~L~-~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i----~~  138 (657)
T PRK08626         79 ------W---------GCDQEVARMFVHTAPKAVRELA-AWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLI----NA  138 (657)
T ss_pred             ------C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCCCeecCCCccccccccccccccccccccccc----cc
Confidence                  0         0111112223334445666765 4565422111100        00     0000001    00


Q ss_pred             CCceeEE------EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEE
Q 013476          216 RSLKGAV------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVV  289 (442)
Q Consensus       216 ~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VV  289 (442)
                      . ..++.      +..++.  -..++..|.+.+++.|++|+.++.+++|+.++ | +|.||++.+..+|+...+.||.||
T Consensus       139 r-~~GG~~~~R~~~~~d~t--G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~G~~~~i~AkaVV  213 (657)
T PRK08626        139 R-DFGGTKKWRTCYTADGT--GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-K-RCYGAVVRCLITGELRAYVAKATL  213 (657)
T ss_pred             c-cccccccceeEecCCCc--HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCeEE
Confidence            0 11111      111221  24567788888888999999999999999876 6 999999986457776788999999


Q ss_pred             EccCCChHH
Q 013476          290 NAAGPFCDS  298 (442)
Q Consensus       290 lAtG~~s~~  298 (442)
                      +|||+|+..
T Consensus       214 LATGG~g~~  222 (657)
T PRK08626        214 IATGGYGRI  222 (657)
T ss_pred             ECCCcccCC
Confidence            999998853

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.67  E-value=3.5e-15  Score=150.24  Aligned_cols=198  Identities=14%  Similarity=0.088  Sum_probs=114.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||||||+|++|++||++|++. ++|+||||....+++|..+.|.+......       ...+..+........... 
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~-------~~~D~~e~~~~d~~~~g~-   74 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALAN-------VEEDNWEWHTFDTVKGGD-   74 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccC-------CCCCCHHHHHHHHHHhhc-
Confidence            358999999999999999999987 99999999976666665554443321110       011122111111111000 


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC----CceeEEEee
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR----SLKGAVVYY  225 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~  225 (442)
                           .         .+.......+...+.+..+|+. .+|++.....+.......++..    ...    ......+..
T Consensus        75 -----~---------~~d~~~v~~~~~~~~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~----s~~~~~~~~~r~~~~~  135 (583)
T PRK08205         75 -----Y---------LVDQDAAEIMAKEAIDAVLDLE-KMGLPFNRTPEGKIDQRRFGGH----TRDHGKAPVRRACYAA  135 (583)
T ss_pred             -----C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeecccccc----cccccCCCccceeccC
Confidence                 0         0111112223334445667775 5777521111111100111110    000    000111111


Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCC---CCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~---g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      +  .....++..|.+.+++.|+++++++.+++|+.+++   | +|+||++.+..+++...+.||.||+|||+++..
T Consensus       136 ~--~tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        136 D--RTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP-VAAGVVAYELATGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             C--CCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC-cEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence            1  12356788899989999999999999999987653   6 999998864345655678999999999998853

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.66  E-value=1.4e-15  Score=138.52  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHHh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSVR  300 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l~  300 (442)
                      ...++++|+..+++.||+++++++|.++..++++   ..+..   .+|.  .++||.+|+|||+-|          -.++
T Consensus       110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~---f~l~t---~~g~--~i~~d~lilAtGG~S~P~lGstg~gy~iA  181 (408)
T COG2081         110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG---FRLDT---SSGE--TVKCDSLILATGGKSWPKLGSTGFGYPIA  181 (408)
T ss_pred             hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce---EEEEc---CCCC--EEEccEEEEecCCcCCCCCCCCchhhHHH
Confidence            3678999999999999999999999999998743   22333   2333  899999999999654          3678


Q ss_pred             hhhCCCC
Q 013476          301 KLADQNV  307 (442)
Q Consensus       301 ~~~g~~~  307 (442)
                      +.+|+++
T Consensus       182 ~~~G~~I  188 (408)
T COG2081         182 RQFGHTI  188 (408)
T ss_pred             HHcCCcc
Confidence            8888764

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.66  E-value=7.9e-15  Score=147.73  Aligned_cols=64  Identities=30%  Similarity=0.411  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHHH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSV  299 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~l  299 (442)
                      ..++..|.+.+++.|++|+++++|++|+.++ + +|+||++.+ .++ ...+.+ +.||+|||+++.++
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g-~V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~  278 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEG-G-RVVGARVID-AGG-ERRITARRGVVLACGGFSHDL  278 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchH
Confidence            4577788888999999999999999999876 6 999999875 233 346788 58999999998543

>PRK06185 hypothetical protein; Provisional

Probab=99.66  E-value=1.8e-14  Score=140.15  Aligned_cols=146  Identities=20%  Similarity=0.138  Sum_probs=91.0

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +....+...|.+.+.+. |++++++++++++..++ + ++++|.+.. .++ ..+++||.||.|+|.+| .+.+.+|+..
T Consensus       105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~-~v~~v~~~~-~~g-~~~i~a~~vI~AdG~~S-~vr~~~gi~~  179 (407)
T PRK06185        105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-G-RVTGVRART-PDG-PGEIRADLVVGADGRHS-RVRALAGLEV  179 (407)
T ss_pred             eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-C-EEEEEEEEc-CCC-cEEEEeCEEEECCCCch-HHHHHcCCCc
Confidence            44456778888887765 89999999999999877 4 788888764 233 25799999999999999 4888888764


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCc-eEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhc
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGM-GLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL  385 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (442)
                        ...+..+..+.+......... ..+.. ..++..++++|..+.+.++.+....   ..........+++.+.+...+
T Consensus       180 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~llP~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  252 (407)
T PRK06185        180 --REFGAPMDVLWFRLPREPDDPESLMGR-FGPGQGLIMIDRGDYWQCGYVIPKG---GYAALRAAGLEAFRERVAELA  252 (407)
T ss_pred             --cccCCCceeEEEecCCCCCCCcccceE-ecCCcEEEEEcCCCeEEEEEEecCC---CchhhhhhhHHHHHHHHHHhC
Confidence              334544444433322111111 11222 2334467788877766676665321   122223334455666665555

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.66  E-value=6.8e-15  Score=148.09  Aligned_cols=194  Identities=15%  Similarity=0.104  Sum_probs=110.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      .++||||||+|++|++||++|++.  |++|+||||....++.+....|.+.......    .  ..+..+...+......
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~----~--~~ds~e~~~~d~~~~~   75 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNV----D--PEDSWEAHAFDTVKGS   75 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCC----C--CCCCHHHHHHHHHHHh
Confidence            468999999999999999999987  4899999999764444443333332221100    0  0111111111111110


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccCCceeEEEeeC
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      .      .+         +.......+...+.+..+|+. ..|++ +......... ..+..       .......+..+
T Consensus        76 ~------~l---------~d~~~v~~l~~~a~~~i~~L~-~~Gv~-f~~~~~g~~~~~~~gg-------~~~~r~~~~~~  131 (575)
T PRK05945         76 D------YL---------ADQDAVAILTQEAPDVIIDLE-HLGVL-FSRLPDGRIAQRAFGG-------HSHNRTCYAAD  131 (575)
T ss_pred             C------CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCc-eEECCCCcEeeccccc-------cccCeeEecCC
Confidence            0      00         011112222333345566664 56765 2211110000 00000       00111111111


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                        .....++..|.+.+++.|++|++++.|++|..++ | +|.||.+.+..+++...+.||.||+|||+++.
T Consensus       132 --~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        132 --KTGHAILHELVNNLRRYGVTIYDEWYVMRLILED-N-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             --CChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence              1235688889988888999999999999998875 6 99999875434565567999999999999885

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.66  E-value=8.4e-15  Score=147.76  Aligned_cols=191  Identities=16%  Similarity=0.088  Sum_probs=110.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCc-chHHHHHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDY-GQLKLVFHALEERKQVIR  151 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  151 (442)
                      ||||||+|++|++||+.|+++|++|+||||....++.+..+.|.+......       ... +..+...........   
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~-------~~~~d~~e~~~~d~~~~~~---   70 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGN-------VDPDDSWEWHAYDTVKGSD---   70 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCC-------CCCCccHHHHHHHHHHHhC---
Confidence            899999999999999999999999999999976555554444333222110       000 111111111111000   


Q ss_pred             hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccCh
Q 013476          152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND  231 (442)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  231 (442)
                         .         .........+...+.+..+|+. .+|++ +.......... .+.     .........+..  ....
T Consensus        71 ---~---------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~~-~~~-----gg~~~~r~~~~~--~~~G  128 (566)
T TIGR01812        71 ---Y---------LADQDAVEYMCQEAPKAILELE-HWGVP-FSRTPDGRIAQ-RPF-----GGHSKDRTCYAA--DKTG  128 (566)
T ss_pred             ---C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-ceecCCCcEee-ccc-----cccccCeeEECC--CCCH
Confidence               0         0011111222333345667775 56665 22111000000 000     000011111111  1123


Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+...|.+.+++.|+++++++.+++|+.++ | +|+||.+.+..+++...+.||.||+|||+++.
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-G-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            4677888888888899999999999999875 6 99999886534565567999999999999884

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.65  E-value=4.3e-15  Score=148.08  Aligned_cols=190  Identities=17%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++|++||++|++ |++|+||||....+++|..+.|.+......         .++.+...+.......
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~---------~ds~e~~~~d~~~~g~   76 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAP---------DDSPKLHYEDTLKAGA   76 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccC---------CCCHHHHHHHHHHhcC
Confidence            667999999999999999999974 999999999986666665554433322110         1121222211111110


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                            .         .........+...+.+..+|+. ..|++ +...+. .. ...+..     .......++..+  
T Consensus        77 ------~---------~~d~~lv~~~~~~s~~~i~wL~-~~Gv~-f~~~~~-~~-~~~~~~-----g~s~~r~~~~~d--  130 (553)
T PRK07395         77 ------G---------LCDPEAVRFLVEQAPEAIASLV-EMGVA-FDRHGQ-HL-ALTLEA-----AHSRPRVLHAAD--  130 (553)
T ss_pred             ------C---------CCCHHHHHHHHHHHHHHHHHHH-hcCCe-eecCCC-ce-eeeccc-----ccccCeEEEeCC--
Confidence                  0         0111122233334456677775 56665 221110 00 000000     011111111111  


Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .....++..|.+.++++ |++|++++.+++|+.++ +| +|+||.+..  ++....+.||.||+|||+++.
T Consensus       131 ~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g-~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        131 TTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETG-RCQGISLLY--QGQITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             CChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCC-EEEEEEEEE--CCeEEEEEcCEEEEcCCCCcc
Confidence            12256788888888765 99999999999999874 37 999998864  555557899999999999864

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.65  E-value=7.1e-14  Score=134.81  Aligned_cols=121  Identities=20%  Similarity=0.247  Sum_probs=78.2

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+.+.|.+.+++.|++++.++++..+..++++ .+.++..     +. .+++||.||.|+|..+ .+.+.+|...
T Consensus        91 ~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~-~~~~~~~-----~~-~e~~a~~vI~AdG~~s-~l~~~lg~~~  162 (396)
T COG0644          91 IVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDG-VVVGVRA-----GD-DEVRAKVVIDADGVNS-ALARKLGLKD  162 (396)
T ss_pred             EEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCc-EEEEEEc-----CC-EEEEcCEEEECCCcch-HHHHHhCCCC
Confidence            4667888999999999999999999999999998865 4433322     22 6899999999999987 6888887661


Q ss_pred             CCcccCCC---eeEEEeCCCCCCCCceEEee--ecCCCcEEEEEecCC-cEEEccCCC
Q 013476          308 QPMICPSS---GVHIVLPDYYSPEGMGLIVP--KTKDGRVVFMLPWLG-RTVAGTTDS  359 (442)
Q Consensus       308 ~~~~~~~~---g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~g-~~~~g~~~~  359 (442)
                         ..|..   ++.-.+..+.........+.  ....+.+.|++|.++ .+.+|....
T Consensus       163 ---~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~  217 (396)
T COG0644         163 ---RKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVL  217 (396)
T ss_pred             ---CChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEe
Confidence               11111   12111221111112222211  123345788999875 477776653

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.65  E-value=7.4e-15  Score=147.59  Aligned_cols=193  Identities=16%  Similarity=0.125  Sum_probs=112.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      +.++||||||+|++||+||+.|++.  |.+|+||||....++++..+.|.+.....         ..++.+.+.+.....
T Consensus         2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~---------~~ds~e~~~~d~~~~   72 (582)
T PRK09231          2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ---------DHDSFDYHFHDTVAG   72 (582)
T ss_pred             ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcC---------CCCCHHHHHHHHHHh
Confidence            5669999999999999999999987  47999999997666655555443322110         111222222221111


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      ...      +         +.......+...+.+..+|+. .+|++....-+..-....+..       ......++..+
T Consensus        73 g~~------~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~~~~~  129 (582)
T PRK09231         73 GDW------L---------CEQDVVEYFVHHCPTEMTQLE-QWGCPWSRKPDGSVNVRRFGG-------MKIERTWFAAD  129 (582)
T ss_pred             ccc------C---------CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeeecccc-------ccCCeeEecCC
Confidence            110      0         111112223344456677775 577762111010000000000       01111111111


Q ss_pred             cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                        -.-..+...|.+.+.+. |++++.++.+++|+.++ | +|.||++.+..+++...+.||.||+|||+++.
T Consensus       130 --~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        130 --KTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-G-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             --CcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-C-EEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence              11245777888777765 89999999999999875 6 99999886534666678999999999999884

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.65  E-value=6.4e-15  Score=147.40  Aligned_cols=62  Identities=24%  Similarity=0.349  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~  297 (442)
                      ..++..|.+.+++.|++++++++|++|+.++ | +|+||++..  +++...+.| +.||+|||+++.
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-G-RVVGVVVVR--DGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEEEE--CCeEEEEEecceEEEecCCccC
Confidence            4577788888999999999999999999876 6 999999874  555667899 589999999986

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.64  E-value=3.5e-14  Score=131.88  Aligned_cols=162  Identities=14%  Similarity=0.135  Sum_probs=95.5

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+.+.|.+.+++.|++++++++++++..+++  ++. +.+.   + +..+++||.||+|+|.++ .+.+.+++..
T Consensus        87 ~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~~-~~~~---~-~~~~~~a~~vv~a~G~~s-~~~~~~~~~~  158 (295)
T TIGR02032        87 VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RVV-VIVR---G-GEGTVTAKIVIGADGSRS-IVAKKLGLRK  158 (295)
T ss_pred             EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EEE-EEEc---C-ccEEEEeCEEEECCCcch-HHHHhcCCCC
Confidence            356678889999999999999999999999988774  432 3332   2 235799999999999998 5777776553


Q ss_pred             CCcccCCCeeEEEeCCCC---CCCCceEEeee-cCCCcEEEEEecCC-cEEEccCCCCCCCCCCCCCCHHHHHHHHHHhh
Q 013476          308 QPMICPSSGVHIVLPDYY---SPEGMGLIVPK-TKDGRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAIS  382 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~g-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (442)
                      . ......+....++...   .+......+.. ..++.+.|++|..+ .+.++......    +   .....++.++.+.
T Consensus       159 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~----~---~~~~~~~~~~~~~  230 (295)
T TIGR02032       159 E-PRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSA----E---EGEDLKKYLKDFL  230 (295)
T ss_pred             C-CcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccC----C---CCCCHHHHHHHHH
Confidence            1 1111112222333221   11111122211 11346788999865 46676554321    1   1223344555554


Q ss_pred             hhcCCCCCCCCeeeeeeecccccc
Q 013476          383 DYLNVKVRRTDVLSAWSGIRPLAM  406 (442)
Q Consensus       383 ~~~~~~l~~~~~~~~~~G~r~~t~  406 (442)
                      +.+ |.+...++...+.+.+|+..
T Consensus       231 ~~~-~~l~~~~~~~~~~~~~~~~~  253 (295)
T TIGR02032       231 ARR-PELKDAETVEVIGAPIPIGR  253 (295)
T ss_pred             HhC-cccccCcEEeeeceeeccCC
Confidence            555 55666666666777777653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.64  E-value=9e-15  Score=147.40  Aligned_cols=195  Identities=15%  Similarity=0.044  Sum_probs=113.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCC---CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRG---LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE  144 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G---~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (442)
                      ++.++||||||+|++||+||+.|++.|   ++|+||||....++.+..+.|.+......  .     ..++.+.......
T Consensus         2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~--~-----~~ds~e~~~~d~~   74 (577)
T PRK06069          2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYP--E-----KGDSFDLHAYDTV   74 (577)
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeecc--c-----cCCCHHHHHHHHH
Confidence            466799999999999999999999998   89999999986666555554443322110  0     0112211111111


Q ss_pred             HHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhH-HhhCCccccccccCCceeEEE
Q 013476          145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQES-AELFPTLAMKAKDRSLKGAVV  223 (442)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~  223 (442)
                      .....      +         +.......+...+.+..+|+. .+|++ +........ ...+.       ........+
T Consensus        75 ~~g~~------~---------~d~~lv~~~~~~s~~~i~~L~-~~Gv~-f~~~~~G~~~~~~~~-------g~~~~r~~~  130 (577)
T PRK06069         75 KGSDF------L---------ADQDAVEVFVREAPEEIRFLD-HWGVP-WSRRPDGRISQRPFG-------GMSFPRTTF  130 (577)
T ss_pred             Hhhcc------c---------CCHHHHHHHHHHHHHHHHHHH-HcCCe-eEecCCCcEeeeecC-------CcccceeeE
Confidence            11100      0         011112223333445667775 56765 221100000 00000       000111111


Q ss_pred             eeCcccChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          224 YYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       224 ~~~~~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+  .....++..|.+.+++ .|+++++++.+++|+.++ | +|+||.+.+..+++...+.||.||+|||+++.
T Consensus       131 ~~d--~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (577)
T PRK06069        131 AAD--KTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-G-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR  201 (577)
T ss_pred             cCC--CchHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence            111  1124577888888776 599999999999999876 6 99999886534565567899999999999874

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.64  E-value=7.7e-15  Score=142.50  Aligned_cols=187  Identities=14%  Similarity=0.143  Sum_probs=107.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||||||+|.+||+||+.|+ .|++|+||||....++.|..+.|.+....          ..+..+.+.+........
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~----------~~d~~~~~~~d~~~~g~~   71 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR----------NKDDITSFVEDTLKAGQY   71 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC----------CCCCHHHHHHHHHHHhCC
Confidence            4599999999999999999985 69999999999765555443333222100          011212222111111100


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  229 (442)
                                     .........+...+.+..+|+. ..|++ +..... ..  .+...    ........++..  ..
T Consensus        72 ---------------~~d~~lv~~~~~~s~e~i~wL~-~~Gv~-f~~~~~-~~--~~~~~----g~~~~~r~~~~~--~~  125 (433)
T PRK06175         72 ---------------ENNLEAVKILANESIENINKLI-DMGLN-FDKDEK-EL--SYTKE----GAHSVNRIVHFK--DN  125 (433)
T ss_pred             ---------------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-cccCCC-ce--eeecc----CccccCeEEecC--CC
Confidence                           0001112233344456777775 45654 211100 00  00000    000011111111  12


Q ss_pred             ChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          230 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ....++..|.+.+++ .|++|++++++++|+.++ + +|+||.+..  ++....+.||.||+|||+++.
T Consensus       126 ~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~-~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        126 TGKKVEKILLKKVKKRKNITIIENCYLVDIIEND-N-TCIGAICLK--DNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-C-EEEEEEEEE--CCcEEEEEcCeEEEccCcccc
Confidence            235678888888875 499999999999998876 5 999988653  444457999999999999874

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.64  E-value=1.2e-14  Score=145.72  Aligned_cols=192  Identities=19%  Similarity=0.099  Sum_probs=113.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      .++||||||+|++||+||+.|++.  |++|+||||....++.+..+.|.+.....         ..++.+.+.+......
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~---------~~ds~e~~~~dt~~~g   72 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTG---------DDDSLDEHFHDTVSGG   72 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcC---------CCCCHHHHHHHHHHhc
Confidence            459999999999999999999987  58999999998666655555443321110         0112222222111111


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      .      .+         ........+...+.+..+|+. .+|++....-+.......+..       ......++..+ 
T Consensus        73 ~------~~---------~d~~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~R~~~~~~-  128 (580)
T TIGR01176        73 D------WL---------CEQDVVEYFVAEAPKEMVQLE-HWGCPWSRKPDGRVNVRRFGG-------MKKERTWFAAD-  128 (580)
T ss_pred             C------Cc---------CcHHHHHHHHHHhHHHHHHHH-HcCCccEecCCCceeeeccCC-------ccCCeeeecCC-
Confidence            0      00         001112223333445667775 577762211111000000000       01111111111 


Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                       ..-..++..|.+.+.+. |++++.++.+++|+.++ | +|+||.+.+..+|+...+.||.||+|||+++.
T Consensus       129 -~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       129 -KTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-G-RVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             -CCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence             12356788888887764 89999999999999875 6 99999886545676678999999999999985

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.63  E-value=1.4e-14  Score=143.48  Aligned_cols=190  Identities=17%  Similarity=0.117  Sum_probs=111.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||||||+|++||+||++|++ |.+|+||||....+++|..+.|.+.....         ..++.+.+.+........
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~---------~~ds~e~~~~d~~~~g~~   71 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVA---------TYDSPNDHFEDTLVAGCH   71 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceeccc---------CCCCHHHHHHHHHHhccC
Confidence            36899999999999999999987 99999999998766666545444332211         011222222211111100


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  229 (442)
                                     .+.......+...+.+..+|+. .+|++.....+..-....+.       .......++ ..+..
T Consensus        72 ---------------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~g-------g~~~~r~~~-~~gd~  127 (510)
T PRK08071         72 ---------------HNNERAVRYLVEEGPKEIQELI-ENGMPFDGDETGPLHLGKEG-------AHRKRRILH-AGGDA  127 (510)
T ss_pred             ---------------cCCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeeccCc-------CccCCeEEe-cCCCC
Confidence                           0111112223333445666665 46765211100000000000       000111111 11223


Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ....++..|.+.++ .|++|++++.+++|..++ + +|.||.+.+ .+++...+.||.||+|||+++.
T Consensus       128 ~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        128 TGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-G-RCIGVLTKD-SEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             cHHHHHHHHHHHHh-cCCEEEECeEhhheeecC-C-EEEEEEEEE-CCCcEEEEEcCeEEEecCCCcc
Confidence            34668888888776 699999999999998765 6 999999876 4566567899999999999885

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.63  E-value=2.2e-14  Score=143.15  Aligned_cols=196  Identities=18%  Similarity=0.145  Sum_probs=112.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++|++||+.|++. .+|+||||....+++|..+.|.+.....         ..++.+.+.+.......
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~---------~~ds~e~~~~d~~~~g~   75 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLD---------ETDSIESHVEDTLIAGA   75 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccC---------CCccHHHHHHHHHHHcc
Confidence            4569999999999999999999987 8999999998766666666554432211         00111111111111000


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCH-hhHHhhCCccccccccCCceeEEEeeCc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSA-QESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                            .         .+.......+...+.+..+|+. .+|++ +..... .......+...   ........++..  
T Consensus        76 ------~---------~~d~~~v~~~~~~~~~~i~~L~-~~Gv~-f~~~~~~~g~~~~~~~~~---gg~~~~r~~~~~--  133 (536)
T PRK09077         76 ------G---------LCDEDAVRFIAENAREAVQWLI-DQGVP-FTTDEQANGEEGYHLTRE---GGHSHRRILHAA--  133 (536)
T ss_pred             ------C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-cccCCCCCccccccccCC---CCccCCceEecC--
Confidence                  0         0011112223334456677775 56665 221110 00000000000   000011111111  


Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcC-----CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDE-----ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~-----~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...-..+...|.+.+++. |+++++++.+++|+.++     ++ +|+||.+.+..+++...+.||.||+|||+++.
T Consensus       134 ~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  208 (536)
T PRK09077        134 DATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR-RVVGAYVLNRNKERVETIRAKFVVLATGGASK  208 (536)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC-EEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence            112245777888877765 89999999999998754     36 99999987644666668999999999999884

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.63  E-value=1e-14  Score=146.24  Aligned_cols=206  Identities=14%  Similarity=0.031  Sum_probs=107.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC--CCCCCccCCCCcccc-hhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED--FSSGTSSRSTKLIHG-GVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~--~~~g~s~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      .++||||||+|.+||+||+.|++.|++|+||||..  ..+|++..+.|.+.. +...+......   ++.+...+.+...
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~---ds~e~~~~d~~~~   79 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIK---DSLELALQDWLGS   79 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcc---cCHHHHHHHHHhc
Confidence            46999999999999999999999999999999997  455666555444332 22221111111   1122222111111


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHH-HHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEee
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYW-VGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY  225 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  225 (442)
                      ..      . ..... .  ....+...+.. .+.+..+|+. ..|++..............+..    ........ +..
T Consensus        80 ~~------~-~~~~~-~--~~~~~~~~~~~~~s~e~i~wL~-~~Gv~f~~~~~~~~~~~~~~~~----~~~~~~r~-~~~  143 (549)
T PRK12834         80 AG------F-DRPED-H--WPRQWAEAYVDFAAGEKRSWLH-SLGLRFFPVVGWAERGGGDAGG----HGNSVPRF-HIT  143 (549)
T ss_pred             cC------C-CCccc-c--chHHHHHHHHHhCCHHHHHHHH-HcCCeeEecCCccccCCcccCC----cccccCce-ecC
Confidence            00      0 00000 0  00001112222 1346677775 4666421111000000000000    00000000 110


Q ss_pred             CcccChHHHHHHHHHHHH---Hc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCC-------------CceEEEEcCEE
Q 013476          226 DGQMNDSRLNVGLALTAA---LA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLS-------------GKEFDTYAKVV  288 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~---~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~-------------g~~~~i~a~~V  288 (442)
                      .  .....++..|.+.++   +. |++|++++++++|+.++ | +|+||++.+..+             ++...++||.|
T Consensus       144 ~--~~G~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~-g-~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaV  219 (549)
T PRK12834        144 W--GTGPGVVEPFERRVREAAARGLVRFRFRHRVDELVVTD-G-AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAV  219 (549)
T ss_pred             C--CCcHHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC-C-EEEEEEEEecccccccccccccccccceEEEecCEE
Confidence            0  012346667766554   23 69999999999999875 7 999999742111             12357899999


Q ss_pred             EEccCCChHH
Q 013476          289 VNAAGPFCDS  298 (442)
Q Consensus       289 VlAtG~~s~~  298 (442)
                      |||||+|+.+
T Consensus       220 ILATGGf~~n  229 (549)
T PRK12834        220 IVTSGGIGGN  229 (549)
T ss_pred             EEeCCCcccC
Confidence            9999999854

>TIGR00551 nadB L-aspartate oxidase

Probab=99.62  E-value=3.3e-14  Score=140.61  Aligned_cols=188  Identities=15%  Similarity=0.117  Sum_probs=111.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVI  150 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (442)
                      ++||||||+|++||+||+.|++.|. |+||||....++++..+.|.+......         .++.+...+.......  
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~---------~ds~e~~~~d~~~~~~--   69 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAE---------TDSIDSHVEDTLAAGA--   69 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecC---------CCCHHHHHHHHHHhcC--
Confidence            4899999999999999999999998 999999976666665555444322110         0111111111111110  


Q ss_pred             HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccC
Q 013476          151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN  230 (442)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  230 (442)
                          .+         +.......+...+.+..+|+. .+|++.....+..-....+.       .......++.  +...
T Consensus        70 ----~~---------~d~~~v~~~~~~~~~~i~~L~-~~Gv~f~~~~~g~~~~~~~g-------g~~~~r~~~~--~~~~  126 (488)
T TIGR00551        70 ----GI---------CDREAVEFVVSDARSAVQWLV-DQGVLFDRHEQGSYALTREG-------GHSYRRILHA--ADAT  126 (488)
T ss_pred             ----Cc---------CCHHHHHHHHHhHHHHHHHHH-HcCCcceeCCCCCccccCCC-------CcCCCeEEEe--CCCC
Confidence                00         001111222333446677775 56665211111000000000       0011111111  1223


Q ss_pred             hHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...+...|.+.+++ .|+++++++.+++|+.++ + +|+||.+.+ . +....+.||.||+|||+++.
T Consensus       127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g-~v~Gv~~~~-~-~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       127 GREVITTLVKKALNHPNIRIIEGENALDLLIET-G-RVVGVWVWN-R-ETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-C-EEEEEEEEE-C-CcEEEEEcCEEEECCCcccC
Confidence            46788899998887 699999999999998875 6 899998875 2 33457899999999999985

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.62  E-value=2.1e-14  Score=128.91  Aligned_cols=73  Identities=27%  Similarity=0.295  Sum_probs=57.6

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---C---CCceEEEEcCEEEEccCCChHHHhhh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---L---SGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~---~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      +++..+...|.+.+++.|++++++++|.++..++++ +|.||.+...   .   ..+...++||.||+|||.++. +.+.
T Consensus       101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g-~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~-v~~~  178 (257)
T PRK04176        101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDP-RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE-VVSV  178 (257)
T ss_pred             ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCC-cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH-HHHH
Confidence            467889999999999999999999999999887666 8999887521   0   112357999999999999984 4443


Q ss_pred             h
Q 013476          303 A  303 (442)
Q Consensus       303 ~  303 (442)
                      +
T Consensus       179 l  179 (257)
T PRK04176        179 L  179 (257)
T ss_pred             H
Confidence            3

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.62  E-value=2.4e-14  Score=144.19  Aligned_cols=192  Identities=18%  Similarity=0.128  Sum_probs=105.6

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHh
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRN  152 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (442)
                      |||||+|++||+||+.|++.|++|+||||.. +.++.+..+.|.+.......     . ..++.+.+.+.......    
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~-----~-~~ds~e~~~~d~~~~g~----   70 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTK-----G-DGDSPWRHFDDTVKGGD----   70 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccC-----C-CCCCHHHHHHHHHHhcC----
Confidence            7999999999999999999999999999997 55444544443322211100     0 01111111111111110    


Q ss_pred             CCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccChH
Q 013476          153 APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDS  232 (442)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  232 (442)
                        .+         +.......+...+.+..+|+. ..|++.....+.......++.       ......++..+  ....
T Consensus        71 --~~---------~d~~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~R~~~~~~--~tG~  129 (603)
T TIGR01811        71 --FR---------ARESPVKRLAVASPEIIDLMD-AMGVPFAREYGGLLDTRSFGG-------VQVSRTAYARG--QTGQ  129 (603)
T ss_pred             --CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCEEEecCCCccccccccC-------cccCcceecCC--CChh
Confidence              00         001111222333345667775 567652111110000000100       00011111111  1123


Q ss_pred             HHHHHHHHHHHH----cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          233 RLNVGLALTAAL----AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       233 ~l~~~l~~~~~~----~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .++..|.+.+++    .|+++++++++++|+.+++| +|+||.+.+..+++...+.||.||+|||+++.
T Consensus       130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~g-rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  197 (603)
T TIGR01811       130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGN-RARGIIARNLVTGEIETHSADAVILATGGYGN  197 (603)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence            455556555543    38999999999999987667 99999997644666678999999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.61  E-value=2.5e-14  Score=144.37  Aligned_cols=185  Identities=21%  Similarity=0.144  Sum_probs=106.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      +.++||||||+|++||+||+.|++.  |++|+||||....++.+ ...|....+...     ..  ..+.+.+.+.+...
T Consensus         9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~-----~~--~ds~e~~~~d~~~~   80 (608)
T PRK06854          9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYI-----GE--GETPEDYVRYVRKD   80 (608)
T ss_pred             eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCcccccccc-----cc--CCCHHHHHHHHHHh
Confidence            4469999999999999999999998  99999999987533222 122210000000     00  01111122211111


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      ..      .+         ........+...+.+..+|+. .+|++.....+.    ..++.        .    ..  .
T Consensus        81 ~~------~~---------~d~~lv~~~~~~s~~~i~~L~-~~Gv~f~~~~~G----~~~~~--------g----~~--~  126 (608)
T PRK06854         81 LM------GI---------VREDLVYDIARHVDSVVHLFE-EWGLPIWKDENG----KYVRR--------G----RW--Q  126 (608)
T ss_pred             cc------CC---------CCHHHHHHHHHhHHHHHHHHH-HcCCeeeecCCC----Ccccc--------C----Cc--c
Confidence            10      00         011111222333345666664 566652111110    00000        0    00  0


Q ss_pred             cccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...+...+...|.+.++++| +++++++.|++|..++ + +|+||.+.+..+++...+.||.||+|||+++.
T Consensus       127 ~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        127 IMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-N-RIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            01344567788888888875 9999999999998776 6 99999875434555568999999999999885

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.61  E-value=4.4e-14  Score=142.23  Aligned_cols=65  Identities=29%  Similarity=0.312  Sum_probs=54.8

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS  298 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~  298 (442)
                      +...++..|.+.++++|+++++++++++|+.++ + +|+||.+..  +++...+.| |.||+|||+|+.+
T Consensus       219 ~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n  284 (578)
T PRK12843        219 MGNALIGRLLYSLRARGVRILTQTDVESLETDH-G-RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRH  284 (578)
T ss_pred             ccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEec--CCeEEEEEccceEEECCCCcccC
Confidence            456788899999999999999999999998865 6 999998864  455567887 7999999999864

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.60  E-value=2.8e-14  Score=142.99  Aligned_cols=62  Identities=27%  Similarity=0.369  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcC-EEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~-~VVlAtG~~s~  297 (442)
                      ..+...|.+.+++.|+++++++++++|+.++ + +|+||++..  +++...+.|+ .||+|||++..
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g-~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED-G-RVTGVHAAE--SGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEe--CCcEEEEEeceeEEEccCCcCc
Confidence            3466777788888999999999999999875 6 999999864  4556789995 79999999875

>PRK08275 putative oxidoreductase; Provisional

Probab=99.60  E-value=4.2e-14  Score=141.91  Aligned_cols=192  Identities=21%  Similarity=0.193  Sum_probs=107.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCC-CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSS-GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE  145 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (442)
                      +.++||||||+|++|++||+.|+++  |++|+||||..... +++....+    +...   ... ....+.+.+.+....
T Consensus         7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~----g~~~---~~~-~~~d~~~~~~~d~~~   78 (554)
T PRK08275          7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMD----GLNN---AVI-PGHATPEQYTKEITI   78 (554)
T ss_pred             eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhh----hHhh---hhc-cCCCCHHHHHHHHHH
Confidence            4569999999999999999999987  78999999997532 22111111    1100   000 001122211111111


Q ss_pred             HHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEee
Q 013476          146 RKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY  225 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  225 (442)
                      ...      .+         .....-..+...+....+|+. .+|++ +.........  .+..      ... +.+...
T Consensus        79 ~~~------~~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~--~~~~------~~~-~~~~~~  132 (554)
T PRK08275         79 AND------GI---------VDQKAVYAYAEHSFETIQQLD-RWGVK-FEKDETGDYA--VKKV------HHM-GSYVLP  132 (554)
T ss_pred             hcC------CC---------ccHHHHHHHHHhhHHHHHHHH-HCCCe-eEeCCCCCEe--eecc------ccc-Cccccc
Confidence            100      00         001111122233345667774 56765 2211000000  0000      000 000000


Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                        ...-..+...|.+.+++.|++|++++.+++|+.+++| +|.||++.+..+|+...+.||.||+|||+++.
T Consensus       133 --~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        133 --MPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADG-RVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             --CCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC-eEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence              0112467788888888899999999999999987447 99999876534565567899999999999874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.59  E-value=3.3e-15  Score=142.27  Aligned_cols=71  Identities=18%  Similarity=0.168  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSV  299 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l  299 (442)
                      ....+++.|.+.+++.||+|+++++|.+|+.+++  .+..|.+.   +  ...+.||.||+|||+-|          -.+
T Consensus       107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~---~--~~~~~a~~vILAtGG~S~p~~GS~G~gy~~  179 (409)
T PF03486_consen  107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTK---N--GGEYEADAVILATGGKSYPKTGSDGSGYRI  179 (409)
T ss_dssp             -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEET---T--TEEEEESEEEE----SSSGGGT-SSHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeecc---C--cccccCCEEEEecCCCCccccCCCcHHHHH
Confidence            4578899999999999999999999999998874  66667662   2  35899999999999855          367


Q ss_pred             hhhhCCCC
Q 013476          300 RKLADQNV  307 (442)
Q Consensus       300 ~~~~g~~~  307 (442)
                      ++.+|.++
T Consensus       180 a~~lGh~i  187 (409)
T PF03486_consen  180 AKKLGHTI  187 (409)
T ss_dssp             HHHTT--E
T ss_pred             HHHCCCcE
Confidence            78888764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.58  E-value=5.5e-14  Score=139.48  Aligned_cols=190  Identities=17%  Similarity=0.072  Sum_probs=108.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC-CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +.++||||||+|++||+||++|+  |.+|+||||... .++++..+.|.+.....      .   .++.+.+.+......
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~------~---~ds~e~~~~d~~~~~   75 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALG------P---DDSPALHAADTLAAG   75 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccC------C---CCCHHHHHHHHHHhh
Confidence            56799999999999999999997  579999999986 34445444443322110      0   011112222111111


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      .      .         .+.......+...+.+..+|+. ..|++ +......... ..+.     ..+.....++. .+
T Consensus        76 ~------g---------~~d~~~v~~~~~~s~~~i~wL~-~~Gv~-f~~~~~G~~~-~~~~-----~~~~~~r~~~~-~g  131 (513)
T PRK07512         76 A------G---------LCDPAVAALITAEAPAAIEDLL-RLGVP-FDRDADGRLA-LGLE-----AAHSRRRIVHV-GG  131 (513)
T ss_pred             C------C---------CCCHHHHHHHHHHHHHHHHHHH-HhCCc-cccCCCCccc-cccc-----cCccCCcEEEc-CC
Confidence            0      0         0111112223333445667775 56664 2110000000 0000     00011111111 12


Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ......++..|.+.+++. |++++.++.+++|..++ | +|+||++.+  ++....+.||.||+|||+++.
T Consensus       132 ~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        132 DGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDD-G-AVAGVLAAT--AGGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEECcChhheeecC-C-EEEEEEEEe--CCeEEEEECCEEEEcCCCCcC
Confidence            223467888998888875 89999999999998765 6 999999874  333457899999999999874

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.57  E-value=1.8e-13  Score=137.05  Aligned_cols=186  Identities=19%  Similarity=0.165  Sum_probs=107.2

Q ss_pred             cEEEECCChHHHHHHHHHH----HCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAA----TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La----~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ||||||+|++||+||+.|+    +.|++|+||||......++ .+.|+...+.......    ..++.+...+.......
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~----g~Ds~e~~~~d~~~~~~   75 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRF----GENNAEDYVRYVRTDLM   75 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhccc----CCCCHHHHHHHHHHhcC
Confidence            8999999999999999998    7899999999997543333 3444221111111000    01122222222111110


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                            .         .+.......+...+.+..+|+. .+|++ +.......  ...+        .   +.....   
T Consensus        76 ------g---------l~d~~lV~~lv~~s~~~i~~L~-~~Gv~-F~~~~~~G--~~~~--------~---g~~~~~---  122 (614)
T TIGR02061        76 ------G---------LVREDLIFDMARHVDDSVHLFE-EWGLP-LWIKPEDG--KYVR--------E---GRWQIM---  122 (614)
T ss_pred             ------C---------CCcHHHHHHHHHHHHHHHHHHH-HcCCC-ceecCCCC--cccc--------C---CCcccC---
Confidence                  0         0112222334445556777775 57776 32110000  0000        0   000000   


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .....+...+...+++.+++++.++.+++|+.+++  | +|+||++.+..+++...+.||.||+|||+|+.
T Consensus       123 ~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G-rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       123 IHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN-RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             cCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC-eEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            01234445555666677789999999999998653  6 99999986645676678999999999999984

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PLN02697 lycopene epsilon cyclase

Probab=99.57  E-value=1e-12  Score=129.14  Aligned_cols=163  Identities=10%  Similarity=0.099  Sum_probs=93.8

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+.+.|++.+.+.|+++ .+++|+++..+++  .+..+...   +|  ..+.|+.||+|+|.+|..++..-....
T Consensus       188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~---dG--~~i~A~lVI~AdG~~S~rl~~~~~~~~  259 (529)
T PLN02697        188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACE---DG--RVIPCRLATVASGAASGRLLQYEVGGP  259 (529)
T ss_pred             EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEc---CC--cEEECCEEEECCCcChhhhhccccCCC
Confidence            5777889999999999999998 6889999988764  33323332   33  479999999999999965544110011


Q ss_pred             CCcccCCCeeEEEeCC-CCCCCCceEEee------------ecCCCcEEEEEecC-CcEEE-ccCCCCCCCCCCCCCCHH
Q 013476          308 QPMICPSSGVHIVLPD-YYSPEGMGLIVP------------KTKDGRVVFMLPWL-GRTVA-GTTDSDTVITLLPEPHED  372 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~p~~-g~~~~-g~~~~~~~~~~~~~~~~~  372 (442)
                      ........|+.+.+.. ...+.. ...+.            +.....++|++|.. +.+.+ +.....     .+....+
T Consensus       260 ~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~-----~~~l~~~  333 (529)
T PLN02697        260 RVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLAS-----KDAMPFD  333 (529)
T ss_pred             CcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeecc-----CCCCCHH
Confidence            1234555566666543 222221 12211            01123579999985 45566 433211     1122333


Q ss_pred             HHH-HHHHHhhhhcCCCCCCCCeeeeeeeccccccC
Q 013476          373 EIQ-FILDAISDYLNVKVRRTDVLSAWSGIRPLAMD  407 (442)
Q Consensus       373 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D  407 (442)
                      .++ .+.+.+...   .+...++.+.-.|+.|+..+
T Consensus       334 ~l~~~L~~~l~~~---Gi~~~~i~~~E~g~iPm~g~  366 (529)
T PLN02697        334 LLKKRLMSRLETM---GIRILKTYEEEWSYIPVGGS  366 (529)
T ss_pred             HHHHHHHHHHHhC---CCCcceEEEEEeeeecCCCC
Confidence            333 333343332   34445566666789999543

>PRK06184 hypothetical protein; Provisional

Probab=99.56  E-value=7.1e-13  Score=132.10  Aligned_cols=75  Identities=23%  Similarity=0.150  Sum_probs=56.7

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ  308 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~  308 (442)
                      +....+...|.+.+.+.|++++++++++++.++++  .|+ +++.+ .+ ...+++||+||.|+|.+| .+.+.+|+...
T Consensus       106 i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~-~~-~~~~i~a~~vVgADG~~S-~vR~~lgi~~~  179 (502)
T PRK06184        106 VPQWRTERILRERLAELGHRVEFGCELVGFEQDAD--GVT-ARVAG-PA-GEETVRARYLVGADGGRS-FVRKALGIGFP  179 (502)
T ss_pred             cCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEE-EEEEe-CC-CeEEEEeCEEEECCCCch-HHHHhCCCCcc
Confidence            34456777888888888999999999999998875  343 33332 12 245899999999999999 68888887754


Q ss_pred             C
Q 013476          309 P  309 (442)
Q Consensus       309 ~  309 (442)
                      .
T Consensus       180 g  180 (502)
T PRK06184        180 G  180 (502)
T ss_pred             c
Confidence            3

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.56  E-value=5.5e-14  Score=138.66  Aligned_cols=198  Identities=18%  Similarity=0.183  Sum_probs=122.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ..++||||||+|.+||.||+.+++.|++|+|+||..+..+.|..+.|.++........    ...++.+..+........
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~----~~~ds~e~~~~dtvkg~d   79 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVD----VEGDSPELHFYDTVKGGD   79 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCccc----ccCCCHHHHHHHHHhccC
Confidence            4569999999999999999999999999999999986666666665555443211100    000111221111111100


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                      .               .........+...+.+...++. ++|.+..++.+.......+...    ...     .....+.
T Consensus        80 ~---------------l~dqd~i~~~~~~ap~~v~~Le-~~G~~f~r~~~G~~~~r~fgg~----~~~-----rt~~~~~  134 (562)
T COG1053          80 G---------------LGDQDAVEAFADEAPEAVDELE-KWGVPFSRTEDGRIYQRRFGGH----SKP-----RTCFAAD  134 (562)
T ss_pred             C---------------cCCHHHHHHHHHhhHHHHHHHH-HhCCCcccCCCccccccccCCc----CCC-----cceecCC
Confidence            0               0001111222333335556664 6676655555443333333322    000     1112222


Q ss_pred             cChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          229 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .....++..|.+.+.+ .+.+++.+..+.+|..++++ .|.||+..+..+++...+.+|.||+|||++.
T Consensus       135 ~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~-~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         135 KTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG-GVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             CCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC-cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            2336688888888887 67899999999999988755 6999999887788888889999999999988

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.55  E-value=2.4e-13  Score=121.72  Aligned_cols=67  Identities=28%  Similarity=0.377  Sum_probs=52.7

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCC---ceEEEEcCEEEEccCCCh
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g---~~~~i~a~~VVlAtG~~s  296 (442)
                      +...+...|.+.+.+.|+++++++.+.++..++++++|.||.+...   ..+   +...++||.||.|||..+
T Consensus        98 ~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292        98 DSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence            4467888999999999999999999999998764336999987421   011   245899999999999877

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08244 hypothetical protein; Provisional

Probab=99.55  E-value=1.9e-12  Score=128.80  Aligned_cols=73  Identities=23%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +....+.+.|.+.+++.|++++++++++++.++++  .|+ |.+++ .+| ..+++||+||.|+|.+| .+.+.+|+..
T Consensus        97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~-~~g-~~~i~a~~vVgADG~~S-~vR~~lgi~~  169 (493)
T PRK08244         97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GVE-VVVRG-PDG-LRTLTSSYVVGADGAGS-IVRKQAGIAF  169 (493)
T ss_pred             ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eEE-EEEEe-CCc-cEEEEeCEEEECCCCCh-HHHHhcCCCc
Confidence            34456677788888888999999999999988775  443 45543 233 35799999999999999 6888888764

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.53  E-value=1.2e-12  Score=126.10  Aligned_cols=190  Identities=17%  Similarity=0.127  Sum_probs=98.7

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      .++...|-+.|.+.+.+.|++++. +.|+++..+++  .+ .|++.+.   .+++..++.||.||.|+|.+| .+.+.+|
T Consensus        88 ~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~~--~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S-~v~r~lg  162 (388)
T TIGR02023        88 MVRREVFDSYLRERAQKAGAELIH-GLFLKLERDRD--GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANS-PVAKELG  162 (388)
T ss_pred             eeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcCC--eE-EEEEEeccccCCCcceEEEeCEEEECCCCCc-HHHHHcC
Confidence            366778888999999999999975 46999987764  33 3554420   123345799999999999999 6888877


Q ss_pred             CCCCCcccCCCeeEEEeCCC---CCCCCceEEeee-cCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHH
Q 013476          305 QNVQPMICPSSGVHIVLPDY---YSPEGMGLIVPK-TKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDA  380 (442)
Q Consensus       305 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  380 (442)
                      +...........+.+..+..   ..+....+++.. ...+.+.|++|..+...+|.....     . ..+   .+.+++.
T Consensus       163 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~-----~-~~~---~~~~~~~  233 (388)
T TIGR02023       163 LPKNLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGT-----H-GFD---AKQLQAN  233 (388)
T ss_pred             CCCCCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECC-----C-CCC---HHHHHHH
Confidence            65211111000012211211   111111122210 123457889998776666653211     1 112   2334444


Q ss_pred             hhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEeccccc
Q 013476          381 ISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWT  438 (442)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~~  438 (442)
                      +.+.+  .+...++...+.+..|+.+-.     .-..++.++.-+.-|++.-..|.|+
T Consensus       234 l~~~~--~~~~~~~~~~~~~~ip~~~~~-----~~~~~~v~lvGDAAg~v~P~tG~GI  284 (388)
T TIGR02023       234 LRRRA--GLDGGQTIRREAAPIPMKPRP-----RWDFGRAMLVGDAAGLVTPASGEGI  284 (388)
T ss_pred             HHHhh--CCCCceEeeeeeEeccccccc-----cccCCCEEEEeccccCcCCcccccH
Confidence            44443  133333444455666663321     1111234444445666665555554

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.52  E-value=2.9e-13  Score=130.76  Aligned_cols=70  Identities=24%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++...+.+.|.+.+.+.+...+++++|+++..++++  ++ |++   .++  .++.||.||.|+|.+| .+.+.+++..
T Consensus       108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~--~~-v~~---~~g--~~~~a~~vI~AdG~~S-~vr~~~g~~~  177 (388)
T PRK07494        108 IPNWLLNRALEARVAELPNITRFGDEAESVRPREDE--VT-VTL---ADG--TTLSARLVVGADGRNS-PVREAAGIGV  177 (388)
T ss_pred             eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe--EE-EEE---CCC--CEEEEeEEEEecCCCc-hhHHhcCCCc
Confidence            455678888888888775433889999999887753  32 443   233  3789999999999999 5888887764

>PRK06126 hypothetical protein; Provisional

Probab=99.52  E-value=2.9e-12  Score=129.13  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=58.4

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++...+...|.+.+++. |++|+++++++++..+++  .|+ +++.+..+|+..+++||+||.|+|.+| .+++.+|+..
T Consensus       123 i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S-~VR~~lgi~~  198 (545)
T PRK06126        123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD--GVT-ATVEDLDGGESLTIRADYLVGCDGARS-AVRRSLGISY  198 (545)
T ss_pred             CCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC--eEE-EEEEECCCCcEEEEEEEEEEecCCcch-HHHHhcCCcc
Confidence            44456777888888765 899999999999998875  555 555543456556899999999999999 5888888764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.51  E-value=8.8e-13  Score=127.53  Aligned_cols=118  Identities=22%  Similarity=0.226  Sum_probs=76.0

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ  308 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~  308 (442)
                      ++...+...|.+.+++.|++++++++|+++..+++  .++ |++   .+|.  ++.||.||.|+|.+| .+.+.+|+..+
T Consensus       110 v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~--~v~-v~~---~~g~--~~~a~~vV~AdG~~S-~vr~~~g~~~~  180 (392)
T PRK08773        110 VENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD--RVR-LRL---DDGR--RLEAALAIAADGAAS-TLRELAGLPVS  180 (392)
T ss_pred             EEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC--eEE-EEE---CCCC--EEEeCEEEEecCCCc-hHHHhhcCCce
Confidence            45577888999999999999999999999988764  442 443   2343  789999999999999 68888887653


Q ss_pred             CcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEEccC
Q 013476          309 PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTT  357 (442)
Q Consensus       309 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~g~~  357 (442)
                      ...++.++....++...+... ..+....+++ .++++|.. +...+...
T Consensus       181 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~g-~~~~lP~~~~~~~~~w~  228 (392)
T PRK08773        181 RHDYAQRGVVAFVDTEHPHQA-TAWQRFLPTG-PLALLPFADGRSSIVWT  228 (392)
T ss_pred             EEEeccEEEEEEEEccCCCCC-EEEEEeCCCC-cEEEEECCCCceEEEEE
Confidence            333445555544443222211 1222223344 46677864 44434333

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.51  E-value=2.1e-12  Score=125.80  Aligned_cols=76  Identities=17%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCC-CCeEEEEEEEEC----CCCceEEEEcCEEEEccCCChHHHhhh
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNN----LSGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~-g~~v~gV~~~~~----~~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      .++...|-..|.+.+.+.|++++.. .++++..+.+ + ..+.|.+.+.    .+|+..++.||.||.|+|..| .+.+.
T Consensus       128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~-~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~  204 (450)
T PLN00093        128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPN-GPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKD  204 (450)
T ss_pred             EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCC-CcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHH
Confidence            4677788889999999999999765 5777764321 1 2223555431    014445799999999999998 68888


Q ss_pred             hCCC
Q 013476          303 ADQN  306 (442)
Q Consensus       303 ~g~~  306 (442)
                      ++..
T Consensus       205 lg~~  208 (450)
T PLN00093        205 IDAG  208 (450)
T ss_pred             hCCC
Confidence            7764

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.50  E-value=8.2e-13  Score=110.05  Aligned_cols=68  Identities=26%  Similarity=0.373  Sum_probs=53.8

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCC---ceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g---~~~~i~a~~VVlAtG~~s~  297 (442)
                      .++..++..|+..+.+.|++|+..+.|++++..++- +|+||.+.=.   ..+   ....++|++||.|||.-+.
T Consensus       106 ~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~-rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~  179 (262)
T COG1635         106 ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDP-RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE  179 (262)
T ss_pred             ecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCC-ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence            466788999999999999999999999999876655 7999886410   000   2357999999999998773

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.50  E-value=2.3e-12  Score=129.46  Aligned_cols=74  Identities=20%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +....+.+.|.+.+.+. |++++++++|++++++++  .|+ |++++ .+|+..+++||.||.|+|.+| .+.+.+|+..
T Consensus       110 ~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v~-v~~~~-~~G~~~~i~ad~vVgADG~~S-~vR~~lg~~~  184 (538)
T PRK06183        110 FHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GVT-VTLTD-ADGQRETVRARYVVGCDGANS-FVRRTLGVPF  184 (538)
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eEE-EEEEc-CCCCEEEEEEEEEEecCCCch-hHHHHcCCee
Confidence            34456667777777765 999999999999999875  443 45543 255556899999999999999 5888887754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.50  E-value=9.2e-13  Score=139.03  Aligned_cols=192  Identities=18%  Similarity=0.190  Sum_probs=104.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC-CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS-GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      ++.++||||||+|++||+||+++++.|++|+||||..... +++....+.+...  ..    .  ...+.+.+.+.....
T Consensus        10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~--~~----~--~~ds~e~~~~Dt~~~   81 (897)
T PRK13800         10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNA--VI----P--GKAEPEDYVAEITRA   81 (897)
T ss_pred             ceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcc--cC----C--CccCHHHHHHHHHhh
Confidence            3556999999999999999999999999999999997522 2221111111000  00    0  001111111111110


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      ..      .+         +.......+...+.+..+|+. .+|++.....+.....   ..+    .  . .+.+..  
T Consensus        82 g~------gl---------~d~~~v~~~~~~a~~~i~~L~-~~Gv~f~~~~~G~~~~---~~~----~--~-~~~~~~--  133 (897)
T PRK13800         82 ND------GI---------VNQRTVYQTATRGFAMVQRLE-RYGVKFEKDEHGEYAV---RRV----H--R-SGSYVL--  133 (897)
T ss_pred             cC------CC---------CCHHHHHHHHHhHHHHHHHHH-HcCCceeeCCCCCEee---eee----c--c-CCCccc--
Confidence            00      00         011111222333445667775 5777622211110000   000    0  0 000000  


Q ss_pred             cccChHHHHHHHHHHHHHc----CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALA----GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~----Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +.-....+...|.+.+++.    ++++..++.+.+|+.++ | +|+||.+.+..+|+...+.||.||+|||+++.
T Consensus       134 ~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  206 (897)
T PRK13800        134 PMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG-G-RAVGAAALNTRTGEFVTVGAKAVILATGPCGR  206 (897)
T ss_pred             cCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-C-EEEEEEEEecCCCcEEEEECCEEEECCCcccc
Confidence            0011244556666666544    67888888888988765 6 99999987645777778999999999999884

>PRK06834 hypothetical protein; Provisional

Probab=99.48  E-value=7.5e-12  Score=123.51  Aligned_cols=71  Identities=20%  Similarity=0.189  Sum_probs=55.3

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP  309 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~  309 (442)
                      ....+...|.+.+++.|++++++++++++.+++++  |. |++   .++  .+++||+||.|+|.+| .+.+.+|+..+.
T Consensus        98 ~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~-v~~---~~g--~~i~a~~vVgADG~~S-~vR~~lgi~~~g  168 (488)
T PRK06834         98 WQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VD-VEL---SDG--RTLRAQYLVGCDGGRS-LVRKAAGIDFPG  168 (488)
T ss_pred             cHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EE-EEE---CCC--CEEEeCEEEEecCCCC-CcHhhcCCCCCC
Confidence            33567778888888889999999999999998753  32 333   233  3799999999999999 688888877543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.48  E-value=6.4e-13  Score=129.25  Aligned_cols=69  Identities=22%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +....+.+.|.+.+++.|++++++++|++++.++ + ++.++..    ++  .++.||.||+|+|..+ .|.+.+|+.
T Consensus       105 v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g-~v~~v~~----~g--~~i~A~~VI~A~G~~s-~l~~~lgl~  173 (428)
T PRK10157        105 VLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-G-KVVGVEA----DG--DVIEAKTVILADGVNS-ILAEKLGMA  173 (428)
T ss_pred             eEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-C-EEEEEEc----CC--cEEECCEEEEEeCCCH-HHHHHcCCC
Confidence            4556788889999999999999999999998876 5 6655542    22  3789999999999977 688887765

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.48  E-value=6.2e-12  Score=121.28  Aligned_cols=76  Identities=25%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECC----CCceEEEEcCEEEEccCCChHHHhhh
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNL----SGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~----~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      .++...+-+.|.+.+.+.|++++.++ +.++.... .+ ...+|++....    +|+...++||.||.|+|..| .+.+.
T Consensus        89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~-~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~  165 (398)
T TIGR02028        89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADAD-DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKE  165 (398)
T ss_pred             eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCC-ceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHH
Confidence            45667788889999999999998775 77775421 12 44456553211    14445899999999999999 68888


Q ss_pred             hCCC
Q 013476          303 ADQN  306 (442)
Q Consensus       303 ~g~~  306 (442)
                      +|..
T Consensus       166 ~g~~  169 (398)
T TIGR02028       166 IDAG  169 (398)
T ss_pred             hCCC
Confidence            7754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.48  E-value=1.6e-12  Score=126.44  Aligned_cols=116  Identities=17%  Similarity=0.145  Sum_probs=73.6

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+...|.+.+.+.|++++++++|++++.+++  .+. |++   .+|  ..+.||.||.|+|.+| .+.+.+|+..
T Consensus       107 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~---~~g--~~~~ad~vI~AdG~~S-~vr~~~g~~~  177 (403)
T PRK07333        107 MVENRVLINALRKRAEALGIDLREATSVTDFETRDE--GVT-VTL---SDG--SVLEARLLVAADGARS-KLRELAGIKT  177 (403)
T ss_pred             EeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--EEE-EEE---CCC--CEEEeCEEEEcCCCCh-HHHHHcCCCc
Confidence            456678899999999989999999999999988774  332 333   233  3789999999999998 5888888764


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEE
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVA  354 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~  354 (442)
                      ....++..+....++....... ........++ .++++|.. +...+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g-~~~~~Pl~~~~~~~  223 (403)
T PRK07333        178 VGWDYGQSGIVCTVEHERPHGG-RAEEHFLPAG-PFAILPLKGNRSSL  223 (403)
T ss_pred             ccccCCCEEEEEEEEcCCCCCC-EEEEEeCCCC-ceEEeECCCCCeEE
Confidence            3233344444443332221111 1111213444 35677864 44433

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.47  E-value=3.6e-12  Score=122.69  Aligned_cols=69  Identities=23%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             ccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          228 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      .+....+...|.+.+.+.+ ++++++++|+.+..+++  .|+ |++..  +|+  ++.||.||.|.|.+| .+++.++
T Consensus       100 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~-v~l~~--dG~--~~~a~llVgADG~~S-~vR~~~~  169 (387)
T COG0654         100 VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVT-VTLSF--DGE--TLDADLLVGADGANS-AVRRAAG  169 (387)
T ss_pred             EeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceE-EEEcC--CCc--EEecCEEEECCCCch-HHHHhcC
Confidence            3455778899999998876 99999999999999885  666 66641  444  899999999999999 7888888

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.47  E-value=2e-12  Score=127.10  Aligned_cols=176  Identities=15%  Similarity=0.095  Sum_probs=99.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHH-HHHHHHHHHH
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVF-HALEERKQVI  150 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  150 (442)
                      .||||||+|++|++||+.|+++|++|+||||... .+++..+.+.+....       .  ..++.+... +.+.. ... 
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~-~~~s~~a~ggi~~~~-------~--~~ds~e~~~~d~~~~-~~~-   69 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK-KSNSYLAQAGIAFPI-------L--EGDSIRAHVLDTIRA-GKY-   69 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC-CCCcHHHcCCccccc-------C--CCCcHHHHHHHHHHH-hcC-
Confidence            6999999999999999999999999999999853 222222222111100       0  011111111 11111 000 


Q ss_pred             HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccC
Q 013476          151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN  230 (442)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  230 (442)
                           .         ........+...+.+..+|+. ..|++ +...   .   ....       ..+...+...  ...
T Consensus        70 -----~---------~d~~~v~~~~~~~~~~i~~L~-~~Gv~-f~~~---~---~~~g-------~~~~r~~~~~--~~~  118 (466)
T PRK08401         70 -----I---------NDEEVVWNVISKSSEAYDFLT-SLGLE-FEGN---E---LEGG-------HSFPRVFTIK--NET  118 (466)
T ss_pred             -----C---------CCHHHHHHHHHHHHHHHHHHH-HcCCC-cccC---C---CcCC-------ccCCeEEECC--CCc
Confidence                 0         001111122233345666765 46665 2110   0   0000       0111111111  112


Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      ...++..|.+.+++.|++++.+ .+++|..++ + +|+||.+.    +  ..+.+|.||+|||+++...
T Consensus       119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g-~v~Gv~~~----g--~~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN-G-KAYGVFLD----G--ELLKFDATVIATGGFSGLF  178 (466)
T ss_pred             hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-C-EEEEEEEC----C--EEEEeCeEEECCCcCcCCC
Confidence            3568889999999999999865 899988765 6 89998762    2  3689999999999999654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.47  E-value=4.7e-12  Score=122.38  Aligned_cols=70  Identities=20%  Similarity=0.122  Sum_probs=54.3

Q ss_pred             ccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          228 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      .++...+...|.+.+++.| ++++ +++++++..+++  .+. |++.   +|  .+++||.||.|+|.+|. +.+.++..
T Consensus       107 ~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~--~~~-v~~~---~g--~~~~a~~vI~adG~~S~-vr~~~~~~  176 (388)
T PRK07608        107 IVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD--AAT-LTLA---DG--QVLRADLVVGADGAHSW-VRSQAGIK  176 (388)
T ss_pred             EEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC--eEE-EEEC---CC--CEEEeeEEEEeCCCCch-HHHhcCCC
Confidence            3566788899999998887 9998 999999987764  332 4442   33  37999999999999994 88888766


Q ss_pred             C
Q 013476          307 V  307 (442)
Q Consensus       307 ~  307 (442)
                      .
T Consensus       177 ~  177 (388)
T PRK07608        177 A  177 (388)
T ss_pred             c
Confidence            4

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.47  E-value=5.4e-13  Score=112.05  Aligned_cols=67  Identities=28%  Similarity=0.333  Sum_probs=49.7

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CC---CceEEEEcCEEEEccCCCh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LS---GKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~---g~~~~i~a~~VVlAtG~~s  296 (442)
                      .++..++..|...+.+.|++|+..+.|+++...++. ||.||.+.-.   ..   =....++||.||-|||.-+
T Consensus        93 ~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~-rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda  165 (230)
T PF01946_consen   93 ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDD-RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA  165 (230)
T ss_dssp             S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSC-EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred             EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCC-eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence            567788899999888899999999999999876645 9999987521   01   1246899999999999866

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.47  E-value=1.5e-11  Score=118.85  Aligned_cols=163  Identities=16%  Similarity=0.104  Sum_probs=86.2

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+.+.|.+.+.+.|++++ +++|+.+..+++  ....|++.   +|  .+++|+.||.|+|.++ .+.+.. ...
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~--~~~~v~~~---~g--~~~~a~~VI~A~G~~s-~~~~~~-~~~  150 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV--ALSTVYCA---GG--QRIQARLVIDARGFGP-LVQYVR-FPL  150 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC--ceeEEEeC---CC--CEEEeCEEEECCCCch-hccccc-CCC
Confidence            46778899999999998999986 668988887633  33334442   33  3799999999999987 332111 111


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEeee--cC-------CCc--EEEEEecC-CcEEEccCCCCCCCCCCCCCCHHHHH
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIVPK--TK-------DGR--VVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQ  375 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-------~~~--~~~~~p~~-g~~~~g~~~~~~~~~~~~~~~~~~~~  375 (442)
                      ...+....|..+.++...........+..  ..       ...  ++|++|.. +...++.+...    .......+.++
T Consensus       151 ~~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~----~~~~~~~~~~~  226 (388)
T TIGR01790       151 NVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA----DRPALPRDRLR  226 (388)
T ss_pred             CceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc----CCCCCCHHHHH
Confidence            11223344555555432211112222211  11       122  78999975 45666544311    11223344444


Q ss_pred             HHHHHhhhhcCCCCCCCCeeeeeeecccccc
Q 013476          376 FILDAISDYLNVKVRRTDVLSAWSGIRPLAM  406 (442)
Q Consensus       376 ~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~  406 (442)
                      +.+....+.+  .+...++.+.-.|+.|+..
T Consensus       227 ~~l~~~~~~~--g~~~~~i~~~~~~~iP~~~  255 (388)
T TIGR01790       227 QRILARLNAQ--GWQIKTIEEEEWGALPVGL  255 (388)
T ss_pred             HHHHHHHHHc--CCeeeEEEeeeeEEEeccc
Confidence            3333322222  2222334444457778854

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.47  E-value=1.9e-12  Score=126.53  Aligned_cols=61  Identities=16%  Similarity=0.074  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..++..|.+.+++.|++|+++++|++|+.++ ++ +|+||....    ....++||.||+|||+++.
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g-~v~gv~~~~----~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDG-AHDGPLTTV----GTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCC-eEEEEEEcC----CcEEEEcCEEEEcCCCccc
Confidence            4688899999999999999999999999873 46 898887642    2257899999999999875

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK08013 oxidoreductase; Provisional

Probab=99.46  E-value=3.2e-12  Score=123.81  Aligned_cols=70  Identities=23%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +....+...|.+.+.+. |++++++++++++++++++  +. |.+   .+|  .+++||.||.|+|.+| .+++.++++.
T Consensus       108 i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~-v~~---~~g--~~i~a~lvVgADG~~S-~vR~~~~~~~  178 (400)
T PRK08013        108 IENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AF-LTL---KDG--SMLTARLVVGADGANS-WLRNKADIPL  178 (400)
T ss_pred             EEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EE-EEE---cCC--CEEEeeEEEEeCCCCc-HHHHHcCCCc
Confidence            44567788888888875 8999999999999887753  32 333   234  3799999999999999 7888888764

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.46  E-value=5.9e-12  Score=113.31  Aligned_cols=71  Identities=24%  Similarity=0.361  Sum_probs=56.6

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ++...+++.|.+.+... +|++. +-.|.+|..++ | -|.||+.++ +.|+..+..|...|+|.|-|| ++++.+.
T Consensus       144 FhnGRFvq~lR~ka~slpNV~~e-eGtV~sLlee~-g-vvkGV~yk~-k~gee~~~~ApLTvVCDGcfS-nlRrsL~  215 (509)
T KOG1298|consen  144 FHNGRFVQRLRKKAASLPNVRLE-EGTVKSLLEEE-G-VVKGVTYKN-KEGEEVEAFAPLTVVCDGCFS-NLRRSLC  215 (509)
T ss_pred             eeccHHHHHHHHHHhcCCCeEEe-eeeHHHHHhcc-C-eEEeEEEec-CCCceEEEecceEEEecchhH-HHHHHhc
Confidence            44567888998877665 88885 45688888877 6 999999998 555567888999999999999 6877764

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.46  E-value=9.9e-12  Score=118.83  Aligned_cols=156  Identities=19%  Similarity=0.301  Sum_probs=94.3

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...|-+.+.+.+. .+..++.++.|++|..++++   ..|++   .+|.  .++|+.||.|.|..+. ....     
T Consensus        83 ~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~---~~v~~---~~g~--~i~a~~VvDa~g~~~~-~~~~-----  147 (374)
T PF05834_consen   83 MIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDG---VLVVL---ADGR--TIRARVVVDARGPSSP-KARP-----  147 (374)
T ss_pred             EEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCce---EEEEE---CCCC--EEEeeEEEECCCcccc-cccc-----
Confidence            5677888889999888 55566788999999887743   12333   2443  8999999999995443 1111     


Q ss_pred             CCcccCCCeeEEEeCCC-CCCCCceEEe----eec-CCCcEEEEEecC-CcEEEccCCCCCCCCCCCCCCHHHHH-HHHH
Q 013476          308 QPMICPSSGVHIVLPDY-YSPEGMGLIV----PKT-KDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQ-FILD  379 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~----~~~-~~~~~~~~~p~~-g~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~  379 (442)
                       .......|..+.++.. ..+.. ...+    ++. ....++|++|.. ++.++..|.--    ..+....+.++ .+.+
T Consensus       148 -~~~Q~f~G~~v~~~~~~f~~~~-~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs----~~~~~~~~~~~~~l~~  221 (374)
T PF05834_consen  148 -LGLQHFYGWEVETDEPVFDPDT-ATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFS----PRPALPEEELKARLRR  221 (374)
T ss_pred             -cccceeEEEEEeccCCCCCCCc-eEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEc----CCCCCCHHHHHHHHHH
Confidence             1122334555555443 22322 2222    111 234689999975 56777655421    12223444444 4445


Q ss_pred             HhhhhcCCCCCCCCeeeeeeeccccccC
Q 013476          380 AISDYLNVKVRRTDVLSAWSGIRPLAMD  407 (442)
Q Consensus       380 ~~~~~~~~~l~~~~~~~~~~G~r~~t~D  407 (442)
                      ++.. +  .+...+|.+.-.|+.||+..
T Consensus       222 ~l~~-~--g~~~~~i~~~E~G~IPm~~~  246 (374)
T PF05834_consen  222 YLER-L--GIDDYEILEEERGVIPMTTG  246 (374)
T ss_pred             HHHH-c--CCCceeEEEeecceeecccC
Confidence            5555 3  56667788888999999654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.45  E-value=2.6e-11  Score=123.15  Aligned_cols=78  Identities=22%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             cChHHHHHHHHHHHHHcC--ceEecCeEEEEEEEcCC-CCeEEEEEEEEC---CCCceEEEEcCEEEEccCCChHHHhhh
Q 013476          229 MNDSRLNVGLALTAALAG--AAVLNHAEVISLIKDEA-SNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~G--v~i~~~~~v~~l~~~~~-g~~v~gV~~~~~---~~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      ++...+.+.|.+.+.+.|  +++.++++++++.++++ ++.|+ |++++.   .+|+..+++||+||-|.|..| .+++.
T Consensus       138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S-~VR~~  215 (634)
T PRK08294        138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARS-RVRKA  215 (634)
T ss_pred             eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCch-HHHHh
Confidence            455567788888888776  47889999999987642 21343 556541   134446899999999999999 78998


Q ss_pred             hCCCCC
Q 013476          303 ADQNVQ  308 (442)
Q Consensus       303 ~g~~~~  308 (442)
                      +|+...
T Consensus       216 lgi~~~  221 (634)
T PRK08294        216 IGRELR  221 (634)
T ss_pred             cCCCcc
Confidence            887653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.45  E-value=5.4e-12  Score=123.14  Aligned_cols=70  Identities=23%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       232 ~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ..+.+.|.+.+.+. |+++++++++++++.+++  .+. |.+.+  ++...+++||.||.|+|.+| .+.+.+++..
T Consensus       121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~~~-v~~~~--~~~~~~i~adlvIgADG~~S-~vR~~~~~~~  191 (415)
T PRK07364        121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD--AAT-VTLEI--EGKQQTLQSKLVVAADGARS-PIRQAAGIKT  191 (415)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eeE-EEEcc--CCcceEEeeeEEEEeCCCCc-hhHHHhCCCc
Confidence            45777888877775 799999999999988774  332 45542  23335799999999999999 6788777653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.45  E-value=1.5e-12  Score=124.27  Aligned_cols=74  Identities=24%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ++...+.+.|.+.+++.|++++++++++++.++.+  .++.+ +.+..+|+..+++||.||.|.|.+| .+++.++..
T Consensus       108 ~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~-~~~~~~g~~~~i~adlvVgADG~~S-~vR~~l~~~  181 (356)
T PF01494_consen  108 IDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVV-VRDGEDGEEETIEADLVVGADGAHS-KVRKQLGID  181 (356)
T ss_dssp             EEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEE-EEETCTCEEEEEEESEEEE-SGTT--HHHHHTTGG
T ss_pred             hhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccccc-cccccCCceeEEEEeeeecccCccc-chhhhcccc
Confidence            44567888999999999999999999999998885  55533 3343466666899999999999999 688877655

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02463 lycopene beta cyclase

Probab=99.44  E-value=3.2e-11  Score=116.94  Aligned_cols=62  Identities=19%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +.++...+.+.|.+.+.+.|++++ +++|+++..+++  . ..|++.   +|  .++.|+.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~-~~V~~~---dG--~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--K-SLVVCD---DG--VKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--e-EEEEEC---CC--CEEEcCEEEECcCCCcC
Confidence            346778888999999988999996 679999988764  3 234443   33  37999999999999774

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.44  E-value=6.9e-12  Score=121.84  Aligned_cols=70  Identities=19%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++...+...|.+.+++.|++++++++++++..++++  +. |.+.   +|  .++.||.||.|+|.+| .+.+.+++..
T Consensus       109 i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~-v~~~---~g--~~~~a~~vVgAdG~~S-~vR~~lg~~~  178 (405)
T PRK05714        109 VENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WL-LTLA---DG--RQLRAPLVVAADGANS-AVRRLAGCAT  178 (405)
T ss_pred             EEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EE-EEEC---CC--CEEEeCEEEEecCCCc-hhHHhcCCCc
Confidence            445677788888888889999999999999887753  32 3432   33  3789999999999999 6888887764

>PRK10015 oxidoreductase; Provisional

Probab=99.44  E-value=1.9e-12  Score=125.78  Aligned_cols=69  Identities=22%  Similarity=0.209  Sum_probs=54.8

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +....+-..|.+.+++.|++++.+++|+.+..++ + ++++|...      ...+.|+.||+|+|..+ .+.+.+++.
T Consensus       105 v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~-~v~~v~~~------~~~i~A~~VI~AdG~~s-~v~~~lg~~  173 (429)
T PRK10015        105 VLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-N-KVTGVQAG------DDILEANVVILADGVNS-MLGRSLGMV  173 (429)
T ss_pred             eehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-C-EEEEEEeC------CeEEECCEEEEccCcch-hhhcccCCC
Confidence            4456777888899999999999999999998776 4 77766531      24799999999999987 577777653

>PRK07045 putative monooxygenase; Reviewed

Probab=99.44  E-value=2.4e-11  Score=117.36  Aligned_cols=71  Identities=13%  Similarity=0.121  Sum_probs=52.7

Q ss_pred             cChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-hCCC
Q 013476          229 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQN  306 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~g~~  306 (442)
                      +....+.+.|.+.+.+ .|+++++++++++++.++++ .++.|...   +|+  ++.+|.||.|+|.+| .+++. +++.
T Consensus       103 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~---~g~--~~~~~~vIgADG~~S-~vR~~~~~~~  175 (388)
T PRK07045        103 IPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADG-TVTSVTLS---DGE--RVAPTVLVGADGARS-MIRDDVLRMP  175 (388)
T ss_pred             ccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC-cEEEEEeC---CCC--EEECCEEEECCCCCh-HHHHHhhCCC
Confidence            3445677788887754 58999999999999987765 55556553   343  789999999999999 56664 4443

>PRK07190 hypothetical protein; Provisional

Probab=99.42  E-value=1.6e-11  Score=121.14  Aligned_cols=68  Identities=22%  Similarity=0.221  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ  308 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~  308 (442)
                      ..+...|.+.+++.|++++++++|+++.+++++  ++ +.+   .+|  .++.||+||.|+|..| .+.+.+|+...
T Consensus       109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~-v~~---~~g--~~v~a~~vVgADG~~S-~vR~~lgi~f~  176 (487)
T PRK07190        109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CL-TTL---SNG--ERIQSRYVIGADGSRS-FVRNHFNVPFE  176 (487)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eE-EEE---CCC--cEEEeCEEEECCCCCH-HHHHHcCCCcc
Confidence            456667777888899999999999999998753  32 222   233  3899999999999998 78888887753

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.42  E-value=2.3e-12  Score=119.76  Aligned_cols=68  Identities=22%  Similarity=0.147  Sum_probs=52.1

Q ss_pred             HHHHHHHHHc-CceEecCeEEEEEEEc-CCCCeEEEEEEEECCCCc--eEEEEcCEEEEccCC-ChHHHhhhhCC
Q 013476          236 VGLALTAALA-GAAVLNHAEVISLIKD-EASNRIIGARIRNNLSGK--EFDTYAKVVVNAAGP-FCDSVRKLADQ  305 (442)
Q Consensus       236 ~~l~~~~~~~-Gv~i~~~~~v~~l~~~-~~g~~v~gV~~~~~~~g~--~~~i~a~~VVlAtG~-~s~~l~~~~g~  305 (442)
                      ..++..+.++ |++|+.++.|++|..+ +++ +++||++.+ .++.  ...+.+|.||+|+|. .|+.|+...|+
T Consensus       196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~-~a~gV~~~~-~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGG-RATGVEYVD-NDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHTTTTTEEEEESEEEEEEEEETTST-EEEEEEEEE-TTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hcccchhhccCCccEEcCcEEEEEeeecccc-ceeeeeeee-cCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            4444455555 9999999999999876 335 999999998 4444  456788999999998 57899988877

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02985 squalene monooxygenase

Probab=99.41  E-value=3e-11  Score=119.65  Aligned_cols=74  Identities=23%  Similarity=0.332  Sum_probs=57.3

Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      .++...+.+.|.+.+.+. |++++.+ .++++..++ + .+.||++.+ .+|+..++.||.||.|+|.+| .+++.++..
T Consensus       143 ~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~-~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S-~vR~~l~~~  217 (514)
T PLN02985        143 SFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-G-VIKGVTYKN-SAGEETTALAPLTVVCDGCYS-NLRRSLNDN  217 (514)
T ss_pred             eeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-C-EEEEEEEEc-CCCCEEEEECCEEEECCCCch-HHHHHhccC
Confidence            455567888999888776 7998855 677877765 5 788898865 456556788999999999999 688877654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.41  E-value=1.3e-13  Score=134.02  Aligned_cols=73  Identities=29%  Similarity=0.376  Sum_probs=0.0

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++|..+...|.+.+++.|+++++++.+.+++.++ + +|++|++.+ ..| ..++.||.||.|||.  ..|....|.+.
T Consensus        87 ~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~-~i~~V~~~~-~~g-~~~i~A~~~IDaTG~--g~l~~~aG~~~  159 (428)
T PF12831_consen   87 FDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-G-RITGVIVET-KSG-RKEIRAKVFIDATGD--GDLAALAGAPY  159 (428)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccc-c-ccccccccc-ccc-ccccccccccccccc--ccccccccccc
Confidence            4455555666666778899999999999999987 5 999999986 345 578999999999996  36777777653

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.40  E-value=1.7e-11  Score=118.54  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=61.4

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++...+...|.+.+++. |++++++++++++..++++  + .|.+   .++  .+++||.||.|+|.+| .+.+.+++..
T Consensus       109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~-~v~~---~~g--~~~~a~~vI~AdG~~S-~vR~~~~~~~  179 (391)
T PRK08020        109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--W-ELTL---ADG--EEIQAKLVIGADGANS-QVRQMAGIGV  179 (391)
T ss_pred             EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--E-EEEE---CCC--CEEEeCEEEEeCCCCc-hhHHHcCCCc
Confidence            45567788888888776 9999999999999887643  2 2333   233  3789999999999999 5888888765


Q ss_pred             CCcccCCCeeEEEeC
Q 013476          308 QPMICPSSGVHIVLP  322 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~  322 (442)
                      ..+.++..+..+.++
T Consensus       180 ~~~~y~~~~~~~~~~  194 (391)
T PRK08020        180 HGWQYRQSCMLISVK  194 (391)
T ss_pred             cccCCCceEEEEEEE
Confidence            444445445444444

>PRK06847 hypothetical protein; Provisional

Probab=99.40  E-value=6.8e-11  Score=113.78  Aligned_cols=66  Identities=27%  Similarity=0.296  Sum_probs=51.1

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      .++...+.+.|.+.+++.|++++++++++++..+++  .+ .|.+.   +|+  ++.||.||.|+|.+|. +.+.
T Consensus       103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~~-~v~~~---~g~--~~~ad~vI~AdG~~s~-~r~~  168 (375)
T PRK06847        103 GIMRPALARILADAARAAGADVRLGTTVTAIEQDDD--GV-TVTFS---DGT--TGRYDLVVGADGLYSK-VRSL  168 (375)
T ss_pred             cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--EE-EEEEc---CCC--EEEcCEEEECcCCCcc-hhhH
Confidence            466678889999999889999999999999988764  33 23432   343  6899999999999994 4443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.40  E-value=9.3e-12  Score=120.09  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++...+.+.|.+.+.+. |++++++++|+++..+++  .++ |.+   .+|.  ++.||.||.|+|.+| .+.+.+++..
T Consensus       102 i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~--~~~-v~~---~~g~--~~~ad~vV~AdG~~S-~vr~~l~~~~  172 (382)
T TIGR01984       102 VELADLGQALLSRLALLTNIQLYCPARYKEIIRNQD--YVR-VTL---DNGQ--QLRAKLLIAADGANS-KVRELLSIPT  172 (382)
T ss_pred             EEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC--eEE-EEE---CCCC--EEEeeEEEEecCCCh-HHHHHcCCCC
Confidence            56678899999999884 999999999999988774  332 333   2343  789999999999998 5888887654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.40  E-value=7.8e-12  Score=120.80  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=55.1

Q ss_pred             cChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++...+...|.+.+.+.| ++++++++|+++..+++  .+. |+.   .+|+  ++.+|.||.|+|.+| .+.+.++++.
T Consensus       103 i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~-v~~---~~g~--~~~~~~vi~adG~~S-~vr~~l~~~~  173 (385)
T TIGR01988       103 VENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD--HVE-LTL---DDGQ--QLRARLLVGADGANS-KVRQLAGIPT  173 (385)
T ss_pred             EEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC--eeE-EEE---CCCC--EEEeeEEEEeCCCCC-HHHHHcCCCc
Confidence            455678899999998888 99999999999988764  442 443   3443  689999999999998 5888877654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02661 Putative thiazole synthesis

Probab=99.40  E-value=1e-11  Score=114.12  Aligned_cols=63  Identities=19%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEE------ECCCC---ceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIR------NNLSG---KEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~------~~~~g---~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...|.+.+.+ .|++++.++.+.+|+.++ + ++.||.+.      +..++   +...|+||.||+|||...
T Consensus       172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-D-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-C-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence            4556777776655 689999999999999887 5 99999863      10111   234789999999999765

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.39  E-value=5.6e-12  Score=124.03  Aligned_cols=63  Identities=22%  Similarity=0.340  Sum_probs=51.5

Q ss_pred             cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +++++..+...|.+.+++. |++++ ++.|+++..++ + +|.||.+.   +|  ..+.|+.||+|||.|++
T Consensus        95 aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-g-rV~GV~t~---dG--~~I~Ak~VIlATGTFL~  158 (618)
T PRK05192         95 AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-G-RVVGVVTQ---DG--LEFRAKAVVLTTGTFLR  158 (618)
T ss_pred             HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-C-EEEEEEEC---CC--CEEECCEEEEeeCcchh
Confidence            5788888999998888876 78874 67899998876 5 89999874   34  47999999999998764

>PRK11445 putative oxidoreductase; Provisional

Probab=99.38  E-value=2.2e-10  Score=108.87  Aligned_cols=121  Identities=14%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+...|.+ +.+.|+++++++.++++.+++++|.   |.+.  .+|+..+++||.||.|+|..| .+.+.++...
T Consensus        95 ~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~---v~~~--~~g~~~~i~a~~vV~AdG~~S-~vr~~l~~~~  167 (351)
T PRK11445         95 NIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYH---VIFR--ADGWEQHITARYLVGADGANS-MVRRHLYPDH  167 (351)
T ss_pred             cccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEE---EEEe--cCCcEEEEEeCEEEECCCCCc-HHhHHhcCCC
Confidence            3666677666666 4567899999999999988775422   3432  244445799999999999998 5777665432


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccC
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTT  357 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~  357 (442)
                      .  .....+....+...........++.....+.+.|.+|.++...+|..
T Consensus       168 ~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~W~~p~~~~~~~g~~  215 (351)
T PRK11445        168 Q--IRKYVAIQQWFAEKHPVPFYSCIFDNEITDCYSWSISKDGYFIFGGA  215 (351)
T ss_pred             c--hhhEEEEEEEecCCCCCCCcceEEeccCCCceEEEeCCCCcEEeccc
Confidence            1  11111111122221110111122211112346788888777777644

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.37  E-value=2.4e-11  Score=118.98  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=69.8

Q ss_pred             cChHHHHHHHHHHHHHcC---ceEecCeEEEEEEEc-----CCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476          229 MNDSRLNVGLALTAALAG---AAVLNHAEVISLIKD-----EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR  300 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~G---v~i~~~~~v~~l~~~-----~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~  300 (442)
                      ++...+...|.+.+.+.+   ++++++++|+++..+     +++ .-+.|++   .+|  .+++||.||.|.|.+| .+.
T Consensus       114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~-~~v~v~~---~~g--~~i~a~llVgADG~~S-~vR  186 (437)
T TIGR01989       114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS-NWVHITL---SDG--QVLYTKLLIGADGSNS-NVR  186 (437)
T ss_pred             EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC-CceEEEE---cCC--CEEEeeEEEEecCCCC-hhH
Confidence            445677788888887765   999999999999753     112 1122333   344  3799999999999999 688


Q ss_pred             hhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEE
Q 013476          301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVA  354 (442)
Q Consensus       301 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~  354 (442)
                      +.+|+.....-+.....+..+.....+.....+....+++. +.++|.. +...+
T Consensus       187 ~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~-~~~lPl~~~~~~~  240 (437)
T TIGR01989       187 KAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGP-IALLPLPDNNSTL  240 (437)
T ss_pred             HHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCC-EEEeECCCCCEEE
Confidence            88887754333333333333332211111112222245554 5556864 34433

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.37  E-value=2.8e-11  Score=117.54  Aligned_cols=67  Identities=21%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       232 ~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ..+...|.+.+.+. |++++++++|+++..+++  .+ .|.+.   +|+  +++||.||.|+|.+| .+.+.++++.
T Consensus       111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~~-~v~~~---~g~--~~~a~lvIgADG~~S-~vR~~~~~~~  178 (405)
T PRK08850        111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGES--EA-WLTLD---NGQ--ALTAKLVVGADGANS-WLRRQMDIPL  178 (405)
T ss_pred             HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--eE-EEEEC---CCC--EEEeCEEEEeCCCCC-hhHHHcCCCe
Confidence            45667777777664 799999999999988764  33 24442   343  799999999999998 6888887764

>PRK09126 hypothetical protein; Provisional

Probab=99.36  E-value=5.1e-11  Score=115.34  Aligned_cols=69  Identities=14%  Similarity=0.202  Sum_probs=50.9

Q ss_pred             ChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          230 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +...+.+.|.+.+.+ .|++++++++|++++.+++  .+ .|++.   +|  .++.||.||.|+|.+| .+.+.+|+..
T Consensus       108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~--~~-~v~~~---~g--~~~~a~~vI~AdG~~S-~vr~~~g~~~  177 (392)
T PRK09126        108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD--GA-QVTLA---NG--RRLTARLLVAADSRFS-ATRRQLGIGA  177 (392)
T ss_pred             eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC--eE-EEEEc---CC--CEEEeCEEEEeCCCCc-hhhHhcCCCc
Confidence            334566777777654 6999999999999988764  33 24443   34  3799999999999988 6888777653

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.36  E-value=1.2e-10  Score=117.28  Aligned_cols=73  Identities=12%  Similarity=0.149  Sum_probs=53.9

Q ss_pred             ChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476          230 NDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ  308 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~  308 (442)
                      ....+...|.+.+.+. |++++++++++++..++++  ++ +.+++ .++ ..+++||.||.|+|.+| .+.+.+|+...
T Consensus       123 ~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--v~-v~~~~-~~g-~~~i~ad~vVgADG~~S-~vR~~lg~~~~  196 (547)
T PRK08132        123 QQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG--VT-LTVET-PDG-PYTLEADWVIACDGARS-PLREMLGLEFE  196 (547)
T ss_pred             CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE--EE-EEEEC-CCC-cEEEEeCEEEECCCCCc-HHHHHcCCCCC
Confidence            3345667777777775 7999999999999988753  32 34432 233 24789999999999999 58888887643

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.35  E-value=4.1e-11  Score=118.31  Aligned_cols=56  Identities=29%  Similarity=0.331  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      ..+.++|.+.++++|++|+++++|++|..++ | +.++++..   .+  ..+++|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g-~g~~~~~~---~g--~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEG-G-KGVGVRTS---DG--ENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeC-C-cceEEecc---cc--ceeccceeEecCch
Confidence            6899999999999999999999999999988 4 64444442   23  47889999998887

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.35  E-value=9e-11  Score=113.08  Aligned_cols=67  Identities=22%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       232 ~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ..+...|.+.+.+. |+++++++++++++.+++  .++ |.+.   +|  .+++||.||.|+|.+| .+.+.+++..
T Consensus       110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~-v~~~---~g--~~~~~~lvIgADG~~S-~vR~~~gi~~  177 (384)
T PRK08849        110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNR-VTLE---SG--AEIEAKWVIGADGANS-QVRQLAGIGI  177 (384)
T ss_pred             HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEE-EEEC---CC--CEEEeeEEEEecCCCc-hhHHhcCCCc
Confidence            45666777776654 799999999999998775  332 4443   34  3899999999999999 6888877653

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.34  E-value=5.1e-11  Score=115.53  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       231 ~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ...+.+.|.+.+.+ .|++++++++++++..+++  .+. |++.   ++  .++.||.||.|+|.+| .+++.+++..
T Consensus       111 ~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~--~~~-v~~~---~g--~~~~a~~vI~AdG~~S-~vr~~~~~~~  179 (395)
T PRK05732        111 LHDVGQRLFALLDKAPGVTLHCPARVANVERTQG--SVR-VTLD---DG--ETLTGRLLVAADGSHS-ALREALGIDW  179 (395)
T ss_pred             hHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC--eEE-EEEC---CC--CEEEeCEEEEecCCCh-hhHHhhCCCc
Confidence            34566777777766 4899999999999987764  332 4442   33  3689999999999998 5888887664

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.34  E-value=1e-10  Score=112.30  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=53.6

Q ss_pred             cChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +....+...|.+.+.+.+ ++++++++++++..+++  .+. |.+.   +  . +++||.||.|+|.+| .+.+.++...
T Consensus       101 v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~-v~~~---~--~-~~~adlvIgADG~~S-~vR~~l~~~~  170 (374)
T PRK06617        101 VKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND--YSI-IKFD---D--K-QIKCNLLIICDGANS-KVRSHYFANE  170 (374)
T ss_pred             EEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC--eEE-EEEc---C--C-EEeeCEEEEeCCCCc-hhHHhcCCCc
Confidence            455788889999888875 89999999999988775  332 4442   2  2 799999999999999 6888776653

>TIGR02730 carot_isom carotene isomerase

Probab=99.34  E-value=3e-11  Score=120.17  Aligned_cols=58  Identities=21%  Similarity=0.376  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+++.|.+.++++|++|+++++|++|..++ + ++.+|++.   +|+  .+.||.||+|+|.+.
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~-~~~gv~~~---~g~--~~~ad~vV~a~~~~~  286 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-G-KAVGVKLA---DGE--KIYAKRIVSNATRWD  286 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-C-cEEEEEeC---CCC--EEEcCEEEECCChHH
Confidence            5789999999999999999999999998876 5 88888874   333  689999999999875

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.33  E-value=3.4e-11  Score=112.78  Aligned_cols=187  Identities=20%  Similarity=0.173  Sum_probs=110.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHH-HHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHALEERKQVIR  151 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  151 (442)
                      ||+|||+|++||++|+.|++. ++|+||-|.....++|....|.+...+...         ++.+. +.+.+..-..   
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~---------Ds~~~Hv~DTL~AG~g---   75 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSED---------DSPELHVADTLAAGAG---   75 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCC---------CCHHHHHHHHHHhcCC---
Confidence            999999999999999999998 999999999877777777766654332110         01111 1111111000   


Q ss_pred             hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccCh
Q 013476          152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND  231 (442)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  231 (442)
                          +         +....-......+....+++. .+|++..+..+..-...++.       -+.....++-.+  ..-
T Consensus        76 ----l---------cD~~aV~~iv~~~~~ai~~Li-~~Gv~FDr~~~g~~~lt~Eg-------gHS~rRIlH~~~--~TG  132 (518)
T COG0029          76 ----L---------CDEEAVEFIVSEAPEAIEWLI-DLGVPFDRDEDGRLHLTREG-------GHSRRRILHAAD--ATG  132 (518)
T ss_pred             ----C---------CcHHHHHHHHHhHHHHHHHHH-HcCCCCcCCCCCceeeeeec-------ccCCceEEEecC--Ccc
Confidence                0         000111111223334556654 56665222111100000000       001111111111  333


Q ss_pred             HHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..++..|.+.+++ .+++++.++.+.+|..+++. .+.||.+.+ ..++...+.|+.||||||+.+.
T Consensus       133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-~~~Gv~~~~-~~~~~~~~~a~~vVLATGG~g~  197 (518)
T COG0029         133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-GVAGVLVLN-RNGELGTFRAKAVVLATGGLGG  197 (518)
T ss_pred             HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc-eEeEEEEec-CCCeEEEEecCeEEEecCCCcc
Confidence            6788999998887 59999999999999998854 566999976 2224578999999999999874

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.33  E-value=6.2e-12  Score=110.53  Aligned_cols=197  Identities=20%  Similarity=0.240  Sum_probs=105.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccC-CCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSR-STKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIR  151 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (442)
                      -|||||+|.+||+++..+-..|-.|+|+||....+|.|.. ++|+-..+...++.......++.  ++.+.+.....  .
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~l--f~~Dtl~saks--k   86 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPEL--FVKDTLSSAKS--K   86 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHH--Hhhhhhhhccc--C
Confidence            5999999999999999999988889999999744444433 33333333333222111111111  01111111000  0


Q ss_pred             hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccCh
Q 013476          152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND  231 (442)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  231 (442)
                      ..+.+.              ......+....+|++.++++. ...+..-..+ -.|.-         .    ...+-+.|
T Consensus        87 ~~~eLm--------------~~La~~S~~AvewL~~ef~lk-ld~la~lgGH-SvpRT---------H----r~s~plpp  137 (477)
T KOG2404|consen   87 GVPELM--------------EKLAANSASAVEWLRGEFDLK-LDLLAQLGGH-SVPRT---------H----RSSGPLPP  137 (477)
T ss_pred             CcHHHH--------------HHHHhcCHHHHHHHhhhcccc-hHHHHHhcCC-CCCcc---------c----ccCCCCCC
Confidence            000000              000111224456665545443 2111110000 01110         0    00111111


Q ss_pred             -HHHHHHHHHH----HHHc--CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh---HHHhh
Q 013476          232 -SRLNVGLALT----AALA--GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC---DSVRK  301 (442)
Q Consensus       232 -~~l~~~l~~~----~~~~--Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s---~~l~~  301 (442)
                       ..++.+|...    +.++  -++|..+++|++|..++ | +|.||+..+ .+|+...+.++.||+|||+|+   ..+++
T Consensus       138 gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~-g-kVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLK  214 (477)
T KOG2404|consen  138 GFEIVKALSTRLKKKASENPELVKILLNSKVVDILRNN-G-KVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLK  214 (477)
T ss_pred             chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC-C-eEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHH
Confidence             2344444443    3333  38999999999999666 7 999999987 778778899999999999975   46777


Q ss_pred             hhCC
Q 013476          302 LADQ  305 (442)
Q Consensus       302 ~~g~  305 (442)
                      .++.
T Consensus       215 ey~p  218 (477)
T KOG2404|consen  215 EYGP  218 (477)
T ss_pred             HhCh
Confidence            7654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.33  E-value=1.8e-10  Score=111.27  Aligned_cols=70  Identities=16%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEE-cCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIK-DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~-~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ...+.+.|++.+.+.|++++++++++++.. +++  . ..|.+.  .+|+..+++||.||.|.|.+| .+++.++..
T Consensus       102 ~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~--~-~~V~~~--~~G~~~~i~ad~vVgADG~~S-~vR~~~~~~  172 (392)
T PRK08243        102 QTEVTRDLMAARLAAGGPIRFEASDVALHDFDSD--R-PYVTYE--KDGEEHRLDCDFIAGCDGFHG-VSRASIPAG  172 (392)
T ss_pred             cHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCC--c-eEEEEE--cCCeEEEEEeCEEEECCCCCC-chhhhcCcc
Confidence            346677888888888999999999999987 432  2 335553  255556899999999999999 677777654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.32  E-value=4.4e-11  Score=116.62  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEc-CC--CCeEEEEEEEECCCCceEEE-EcCEEEEccCCChHH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKD-EA--SNRIIGARIRNNLSGKEFDT-YAKVVVNAAGPFCDS  298 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~-~~--g~~v~gV~~~~~~~g~~~~i-~a~~VVlAtG~~s~~  298 (442)
                      ..++..|.+.++++||+|+++++|++|..+ ++  + +|+||.+.....++...+ .+|.||+++|+++.+
T Consensus       226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~-~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n  295 (576)
T PRK13977        226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKK-TATAIHLTRNGKEETIDLTEDDLVFVTNGSITES  295 (576)
T ss_pred             hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCce-EEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence            678899999999999999999999999985 22  5 899999974112222333 459999999998743

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.31  E-value=3.6e-11  Score=116.53  Aligned_cols=66  Identities=11%  Similarity=0.091  Sum_probs=49.5

Q ss_pred             cChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      ++...+.+.|.+.+.+.+ ++++++++++++..+++  .+. |..   .+|  .++.||.||.|+|.+|. +++.+
T Consensus       106 i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~-v~~---~~g--~~~~ad~vV~AdG~~S~-~r~~~  172 (396)
T PRK08163        106 IHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD--GVT-VFD---QQG--NRWTGDALIGCDGVKSV-VRQSL  172 (396)
T ss_pred             EEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC--ceE-EEE---cCC--CEEecCEEEECCCcChH-HHhhc
Confidence            556778888998888774 99999999999987764  332 333   233  37899999999999994 55443

>TIGR00275 flavoprotein, HI0933 family

Probab=99.30  E-value=3.4e-11  Score=116.08  Aligned_cols=68  Identities=21%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHHh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSVR  300 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l~  300 (442)
                      ...+...|.+.+++.|++++++++|+++..+++  . ..|+.    ++  ..+.||.||+|+|+++          -.++
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~-~~v~~----~~--~~i~ad~VIlAtG~~s~p~~gs~G~g~~la  174 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDDN--G-FGVET----SG--GEYEADKVILATGGLSYPQLGSTGDGYEIA  174 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--e-EEEEE----CC--cEEEcCEEEECCCCcccCCCCCCcHHHHHH
Confidence            357888999999999999999999999977653  2 23433    22  3689999999999865          4788


Q ss_pred             hhhCCCC
Q 013476          301 KLADQNV  307 (442)
Q Consensus       301 ~~~g~~~  307 (442)
                      +.+|..+
T Consensus       175 ~~lG~~i  181 (400)
T TIGR00275       175 ESLGHTI  181 (400)
T ss_pred             HHCCCCE
Confidence            8888764

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07538 hypothetical protein; Provisional

Probab=99.29  E-value=1.9e-10  Score=112.05  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=53.1

Q ss_pred             cChHHHHHHHHHHHHH-cC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          229 MNDSRLNVGLALTAAL-AG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~-~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      ++...+...|++.+.+ .| .+++++++|+++..++++ .+  +.+.+..+|+..++.||.||.|.|.+| .+.+.++.
T Consensus        99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~--~~~~~~~~g~~~~~~adlvIgADG~~S-~vR~~l~~  173 (413)
T PRK07538         99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TV--VFLGDRAGGDLVSVRGDVLIGADGIHS-AVRAQLYP  173 (413)
T ss_pred             EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eE--EEEeccCCCccceEEeeEEEECCCCCH-HHhhhhcC
Confidence            5667788888888766 47 469999999999887754 33  333332244446899999999999999 57666643

>PRK07588 hypothetical protein; Provisional

Probab=99.27  E-value=1.9e-10  Score=111.19  Aligned_cols=64  Identities=13%  Similarity=0.177  Sum_probs=45.6

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      +....+...|.+.+ +.|++++++++|++++++++  .|+ |++   .+|+  ++.+|.||.|+|.+| .+++.
T Consensus       100 i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~--~v~-v~~---~~g~--~~~~d~vIgADG~~S-~vR~~  163 (391)
T PRK07588        100 LPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD--GVR-VTF---ERGT--PRDFDLVIGADGLHS-HVRRL  163 (391)
T ss_pred             EEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC--eEE-EEE---CCCC--EEEeCEEEECCCCCc-cchhh
Confidence            33455666666654 34899999999999998775  443 343   2343  578999999999998 45554

>PRK06996 hypothetical protein; Provisional

Probab=99.27  E-value=3.5e-10  Score=109.50  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=69.0

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+.+.|.+.+++.|++++++++++++..++++  |+ +.+.+ .+| ..+++||.||.|+|..+..+.+.+++..
T Consensus       111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~-v~~~~-~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~  185 (398)
T PRK06996        111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VT-LALGT-PQG-ARTLRARIAVQAEGGLFHDQKADAGDSA  185 (398)
T ss_pred             EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EE-EEECC-CCc-ceEEeeeEEEECCCCCchHHHHHcCCCc
Confidence            3455678899999999999999999999999887754  32 23322 122 2579999999999974435667666654


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL  349 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  349 (442)
                      ....+........++........... ....++. +.++|..
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~G~-~~~lp~~  225 (398)
T PRK06996        186 RRRDYGQTAIVGTVTVSAPRPGWAWE-RFTHEGP-LALLPLG  225 (398)
T ss_pred             eeeecCCeEEEEEEEccCCCCCEEEE-EecCCCC-eEEeECC
Confidence            33333333333334332222221222 2234554 5556754

>PRK02106 choline dehydrogenase; Validated

Probab=99.26  E-value=2.6e-10  Score=115.12  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             HHHHHH-HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhhhCCC
Q 013476          238 LALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQN  306 (442)
Q Consensus       238 l~~~~~-~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~~g~~  306 (442)
                      ++..+. ..+++|+.++.|++|+.++ + +++||++.+ ..+....+.+|.||+|+|++ ++.|+...|+.
T Consensus       206 ~l~~a~~~~nl~i~~~a~V~rI~~~~-~-~a~GV~~~~-~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG  273 (560)
T PRK02106        206 YLDPALKRPNLTIVTHALTDRILFEG-K-RAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIG  273 (560)
T ss_pred             hhccccCCCCcEEEcCCEEEEEEEeC-C-eEEEEEEEe-CCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence            333333 4579999999999999986 5 999999976 33444456789999999995 67888777764

>TIGR01810 betA choline dehydrogenase

Probab=99.26  E-value=2.6e-10  Score=114.43  Aligned_cols=68  Identities=19%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             HHHHHHHH-HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC-ChHHHhhhhCCC
Q 013476          236 VGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~-~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~-~s~~l~~~~g~~  306 (442)
                      ..++..++ +.|++|+.++.|.+|..++ + +++||++.+ .++....+.+|.||+|+|. .|+.|+...|+.
T Consensus       197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~-ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG  266 (532)
T TIGR01810       197 RAYLHPAMKRPNLEVQTRAFVTKINFEG-N-RATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIG  266 (532)
T ss_pred             HHHhhhhccCCCeEEEeCCEEEEEEecC-C-eEEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence            34445454 4579999999999999986 5 999999875 2222334578999999999 788998877764

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.24  E-value=7e-10  Score=104.98  Aligned_cols=69  Identities=22%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhhhC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLAD  304 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~~g  304 (442)
                      ...+.++|.+.++++|++|+.+++|.++..++ + ++++|.+.+   +....+.||.||+|+|.| |+.|.+.++
T Consensus       262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~-~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~gL~a~l~  331 (419)
T TIGR03378       262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-N-RVTRIHTRN---HRDIPLRADHFVLASGSFFSNGLVAEFD  331 (419)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-C-eEEEEEecC---CccceEECCEEEEccCCCcCHHHHhhcC
Confidence            36788899999999999999999999999887 4 888877642   223589999999999999 999988764

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.22  E-value=4.2e-10  Score=113.12  Aligned_cols=185  Identities=14%  Similarity=0.017  Sum_probs=106.5

Q ss_pred             HHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCc
Q 013476           84 CGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCM  163 (442)
Q Consensus        84 l~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (442)
                      |+||+++++.|++|+||||..+.+++|..+.|.+......      ....++.+.+.+........              
T Consensus         1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~------~~~~Ds~e~~~~D~~~~g~~--------------   60 (570)
T PRK05675          1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIAS------ADPNDDWRWHMYDTVKGSDY--------------   60 (570)
T ss_pred             ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCC------CCCCCCHHHHHHHHHHHhCC--------------
Confidence            5799999999999999999987666666555544322110      00112222222221111110              


Q ss_pred             ccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC-----CceeEEEeeCcccChHHHHHHH
Q 013476          164 TPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-----SLKGAVVYYDGQMNDSRLNVGL  238 (442)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l  238 (442)
                       .+.......+...+.+..+|+. .+|++.....+.......+...    ...     .....++..+  ..-..++..|
T Consensus        61 -~~d~~~v~~l~~~a~~~i~~L~-~~Gv~F~~~~~G~~~~~~~gg~----~~~~~~~~~~~R~~~~~~--~tG~~i~~~L  132 (570)
T PRK05675         61 -IGDQDAIEYMCSVGPEAVFELE-HMGLPFSRTETGRIYQRPFGGQ----SKDFGKGGQAARTCAAAD--RTGHALLHTL  132 (570)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeecccCcc----ccccccCCccceEEecCC--CCHHHHHHHH
Confidence             0111122233444556777775 5777622111100000000000    000     0001111111  1235788899


Q ss_pred             HHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       239 ~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .+.+++.|++++.++.+++|+.+++| +|+||++.+..+|+...|+||.||||||+++.
T Consensus       133 ~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        133 YQGNLKNGTTFLNEWYAVDLVKNQDG-AVVGVIAICIETGETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHhccCCEEEECcEEEEEEEcCCC-eEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence            99898899999999999999987557 99999986645777778999999999999985

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.22  E-value=9.7e-11  Score=109.42  Aligned_cols=61  Identities=21%  Similarity=0.351  Sum_probs=47.7

Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +++...+-..+.+.+++. +++|+ +.+|++|..++ + +|.||++.   +|  ..+.||.||+|||.|.
T Consensus        91 qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~-~v~GV~~~---~g--~~~~a~~vVlaTGtfl  152 (392)
T PF01134_consen   91 QVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-G-KVKGVVTK---DG--EEIEADAVVLATGTFL  152 (392)
T ss_dssp             EE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-T-EEEEEEET---TS--EEEEECEEEE-TTTGB
T ss_pred             hccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-C-eEEEEEeC---CC--CEEecCEEEEeccccc
Confidence            577788888888888874 78885 68999999988 5 99999884   44  4899999999999944

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.21  E-value=4.8e-10  Score=112.01  Aligned_cols=57  Identities=25%  Similarity=0.223  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ..+.++|.+.++++|++|+++++|++|..++ + ++++|++.   +|  ..+.||.||+|++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~-~~~~V~~~---~g--~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-G-RATAVHLA---DG--ERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-C-EEEEEEEC---CC--CEEECCEEEECCcHH
Confidence            5789999999999999999999999999876 5 88888764   33  368999999999873

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06753 hypothetical protein; Provisional

Probab=99.21  E-value=1.8e-09  Score=103.84  Aligned_cols=67  Identities=13%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ++...+...|.+.+.  +.+++++++++++..+++  .+. |+.   .+|  .++.+|.||.|.|.+| .+++.++..
T Consensus        95 i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~--~v~-v~~---~~g--~~~~~~~vigadG~~S-~vR~~~~~~  161 (373)
T PRK06753         95 LHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETD--KVT-IHF---ADG--ESEAFDLCIGADGIHS-KVRQSVNAD  161 (373)
T ss_pred             ccHHHHHHHHHHhCC--CceEEECCEEEEEEecCC--cEE-EEE---CCC--CEEecCEEEECCCcch-HHHHHhCCC
Confidence            455666667766554  468999999999987764  332 333   234  3689999999999999 677776643

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.21  E-value=1.7e-09  Score=103.14  Aligned_cols=151  Identities=16%  Similarity=0.145  Sum_probs=82.9

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...|.+.+.+.+..   .++++++|+++  +.+  .   |++.   +|  .++.|+.||.|.|..+..... .    
T Consensus        85 ~I~r~~f~~~l~~~l~~---~i~~~~~V~~v--~~~--~---v~l~---dg--~~~~A~~VI~A~G~~s~~~~~-~----  144 (370)
T TIGR01789        85 SMTSTRFHEGLLQAFPE---GVILGRKAVGL--DAD--G---VDLA---PG--TRINARSVIDCRGFKPSAHLK-G----  144 (370)
T ss_pred             EEEHHHHHHHHHHhhcc---cEEecCEEEEE--eCC--E---EEEC---CC--CEEEeeEEEECCCCCCCcccc-c----
Confidence            44455666666654432   36778999988  332  3   4442   33  379999999999987642222 1    


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEe--e--ecCCCcEEEEEecC-CcEEEccCCCCCCCCCCCCCCHHHHHHHH-HHh
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIV--P--KTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFIL-DAI  381 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~p~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~  381 (442)
                        ......|....+..+..+... ..+  +  +....+++|++|.. +...+..|.-    ...+..+.+.++.-+ +.+
T Consensus       145 --~~Q~f~G~~~r~~~p~~~~~~-~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~----s~~~~l~~~~l~~~l~~~~  217 (370)
T TIGR01789       145 --GFQVFLGREMRLQEPHGLENP-IIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYY----ADDPLLDRNALSQRIDQYA  217 (370)
T ss_pred             --eeeEEEEEEEEEcCCCCCCcc-EEEeeeccCCCCceEEEECcCCCCeEEEEEEec----cCCCCCCHHHHHHHHHHHH
Confidence              122333555555544333322 222  1  12334689999975 5666643321    112344555554433 333


Q ss_pred             hhhcCCCCCCCCeeeeeeeccccccCC
Q 013476          382 SDYLNVKVRRTDVLSAWSGIRPLAMDP  408 (442)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~G~r~~t~D~  408 (442)
                      .+.   .+...++.+...|+.||+.++
T Consensus       218 ~~~---g~~~~~i~~~e~g~iPm~~~~  241 (370)
T TIGR01789       218 RAN---GWQNGTPVRHEQGVLPVLLGG  241 (370)
T ss_pred             HHh---CCCceEEEEeeeeEEeeecCC
Confidence            332   344455666667899998763

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.19  E-value=9.6e-10  Score=106.57  Aligned_cols=71  Identities=18%  Similarity=0.121  Sum_probs=52.6

Q ss_pred             cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      ++...+.+.|.+.+.+. |++++++++|+++.++++  .++ |++.+ .++ ..++.||.||.|.|.+| .+++.++.
T Consensus       104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~--~v~-v~~~~-~~~-~~~~~adlvIgADG~~S-~vR~~~~~  175 (400)
T PRK06475        104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN--SIT-ATIIR-TNS-VETVSAAYLIACDGVWS-MLRAKAGF  175 (400)
T ss_pred             ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC--ceE-EEEEe-CCC-CcEEecCEEEECCCccH-hHHhhcCC
Confidence            55678888898888764 899999999999988764  332 33332 122 24789999999999999 57776654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.19  E-value=1.1e-10  Score=102.08  Aligned_cols=59  Identities=20%  Similarity=0.119  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...+.+.|...+++.+++++++++|+++..++++|.|   ++   .++  ..+.|+.||+|||.++.
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v---~~---~~~--~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTV---TT---RDG--RTIRADRVVLATGHYSH  139 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEE---EE---TTS---EEEEEEEEE---SSCS
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEE---EE---Eec--ceeeeeeEEEeeeccCC
Confidence            3566778888888899999999999999999876544   44   233  57889999999998763

...

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.19  E-value=5.8e-10  Score=107.54  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ..+...|.+.+.+.|++++++++++.+...+.. . ..|.+..  +|+..+++||.||.|.|.+| .+++.++..
T Consensus       103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~-~-~~V~~~~--~g~~~~i~adlvIGADG~~S-~VR~~l~~~  172 (390)
T TIGR02360       103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD-R-PYVTFER--DGERHRLDCDFIAGCDGFHG-VSRASIPAE  172 (390)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC-c-cEEEEEE--CCeEEEEEeCEEEECCCCch-hhHHhcCcc
Confidence            456777888888889999999998888653321 2 3456642  45445799999999999999 577766543

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.18  E-value=4e-10  Score=109.98  Aligned_cols=63  Identities=19%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHcCce--EecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAALAGAA--VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~--i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...+.+.|.+.+++.|+.  |+++++|+++..+++.|.|   ++++ .++...+..+|.||+|||.++.
T Consensus       110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V---~~~~-~~~~~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRV---QSKN-SGGFSKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             HHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEE---EEEc-CCCceEEEEcCEEEEeccCCCC
Confidence            467888888899989987  8999999999987654444   4432 1222335688999999998763

>PRK05868 hypothetical protein; Validated

Probab=99.18  E-value=3.1e-09  Score=101.74  Aligned_cols=62  Identities=19%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      ..|.+.|.+ +...|++++++++|+++..+++  .|+ |.+.   +|.  +++||.||.|.|.+| .+++.+
T Consensus       105 ~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~---dg~--~~~adlvIgADG~~S-~vR~~~  166 (372)
T PRK05868        105 DDLVELLYG-ATQPSVEYLFDDSISTLQDDGD--SVR-VTFE---RAA--AREFDLVIGADGLHS-NVRRLV  166 (372)
T ss_pred             HHHHHHHHH-hccCCcEEEeCCEEEEEEecCC--eEE-EEEC---CCC--eEEeCEEEECCCCCc-hHHHHh
Confidence            445554443 3356899999999999987653  442 4443   343  689999999999999 576655

>PTZ00367 squalene epoxidase; Provisional

Probab=99.17  E-value=1.1e-09  Score=109.29  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .++||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46999999999999999999999999999999974

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.16  E-value=2.5e-10  Score=112.28  Aligned_cols=63  Identities=21%  Similarity=0.309  Sum_probs=51.4

Q ss_pred             cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +++|+..+...|.+.+++. |++++ ...|+++..++++ +|.||.+.   +|  ..+.|+.||+|||.|.
T Consensus        91 aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g-~V~GV~t~---~G--~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        91 AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDND-EIKGVVTQ---DG--LKFRAKAVIITTGTFL  154 (617)
T ss_pred             HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCC-cEEEEEEC---CC--CEEECCEEEEccCccc
Confidence            6789999999999999888 77876 5578888776446 89999884   34  3799999999999994

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.16  E-value=4.6e-09  Score=104.68  Aligned_cols=62  Identities=16%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ..+.++|.+.++++|++|+++++|++|..++ + ++++|++.+..+++...+.||.||.++...
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~-~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-G-RAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-C-eEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            6789999999999999999999999999887 4 788888754112223578999999999874

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07208 hypothetical protein; Provisional

Probab=99.15  E-value=1.7e-09  Score=107.51  Aligned_cols=62  Identities=23%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ..+.+.|.+.+++.|++|+++++|++|..++++ .++.+...+ .+|....+.||.||.|+...
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~-~v~~~~~~~-~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDG-RIAVVVVND-TDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCc-EEEEEEEEc-CCCCEEEEEcCEEEECCCHH
Confidence            468889999999999999999999999998765 455555432 23444568999999998874

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=99.14  E-value=5.4e-10  Score=99.06  Aligned_cols=36  Identities=31%  Similarity=0.497  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.++||+|||+|.+||.+|.+||++|++|+|+|+..
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg   38 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG   38 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence            456999999999999999999999999999999984

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.13  E-value=7.4e-10  Score=108.12  Aligned_cols=68  Identities=21%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      .+++...+-+.|.+.+++.||+++.+ .|+++..+++| .|++|+..   +|  .+++||.||.|+|..+. |.+.
T Consensus       149 yhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g-~i~~v~~~---~g--~~i~ad~~IDASG~~s~-L~~~  216 (454)
T PF04820_consen  149 YHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDG-RITAVRLD---DG--RTIEADFFIDASGRRSL-LARK  216 (454)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTS-EEEEEEET---TS--EEEEESEEEE-SGGG-C-CCCC
T ss_pred             EEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCC-CEEEEEEC---CC--CEEEEeEEEECCCccch-hhHh
Confidence            35778899999999999999999877 58888888777 89888874   33  48999999999998773 4443

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.09  E-value=1e-08  Score=101.10  Aligned_cols=64  Identities=14%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      +..+.+.|.+.+++.|++|+++++|++|..+++| +|++|++.+...++...+.||.||+|+...
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~-~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~  275 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDG-SVKHFVLADGEGQRRFEVTADAYVSAMPVD  275 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCC-CEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence            4678899999998899999999999999876666 898998864111112268999999999763

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07236 hypothetical protein; Provisional

Probab=99.08  E-value=2.6e-09  Score=103.05  Aligned_cols=36  Identities=31%  Similarity=0.313  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++..||+|||||++||++|+.|++.|++|+|+||.+
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            556899999999999999999999999999999985

>PLN02785 Protein HOTHEAD

Probab=99.05  E-value=4e-09  Score=105.87  Aligned_cols=67  Identities=19%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcCC---CCeEEEEEEEECCCCceEEE-----EcCEEEEccCC-ChHHHhhhhCCC
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDT-----YAKVVVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~~---g~~v~gV~~~~~~~g~~~~i-----~a~~VVlAtG~-~s~~l~~~~g~~  306 (442)
                      +...+...+++++.++.|++|..+++   + +++||++.+ .+|...+.     .++.||+|+|+ .++.|+...|+.
T Consensus       226 l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~-ra~GV~~~~-~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIG  301 (587)
T PLN02785        226 LLAAGNPNKLRVLLHATVQKIVFDTSGKRP-RATGVIFKD-ENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIG  301 (587)
T ss_pred             HHhhcCCCCeEEEeCCEEEEEEEcCCCCCc-eEEEEEEEE-CCCceEEEEeecccCceEEecccccCCHHHHHHcCCC
Confidence            34445556899999999999998753   4 799999976 34543332     23789999999 467887776653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.04  E-value=4.6e-09  Score=100.78  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+.+.|.+.+++.|++++.+++|+++..++ + ++..+..   .+++...+.||.||+|+|.+..
T Consensus       259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~-~V~~v~~---~~g~~~~i~AD~VVLAtGrf~s  319 (422)
T PRK05329        259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-G-RVTAVWT---RNHGDIPLRARHFVLATGSFFS  319 (422)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEe---eCCceEEEECCEEEEeCCCccc
Confidence            4567788888889999999999999998876 4 7776653   2344567999999999999754

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.03  E-value=3.5e-09  Score=104.29  Aligned_cols=62  Identities=26%  Similarity=0.314  Sum_probs=49.7

Q ss_pred             HcCceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEEEcCEEEEccCC-ChHHHhhhhCCC
Q 013476          244 LAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~-~s~~l~~~~g~~  306 (442)
                      ..+++|+.++.|++|+.+++  + +|++|.+.+..+++..+++||.||||+|+ .+.+|+-..+..
T Consensus       226 ~~n~~l~~~a~v~~i~~d~~~~~-~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~  290 (544)
T TIGR02462       226 SERFTLLTNHRCTRLVRNETNES-EIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG  290 (544)
T ss_pred             CCCEEEEcCCEEEEEEeCCCCCc-eeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence            34599999999999998753  4 89999998744677788999999999998 466777665543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.7e-09  Score=99.12  Aligned_cols=60  Identities=18%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      ....+++.+.+.++..|+++.. ..|.++...++   ..-|.+.     +. .++||.||+|||.....+
T Consensus        59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~---~F~v~t~-----~~-~~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG---PFKVKTD-----KG-TYEAKAVIIATGAGARKL  118 (305)
T ss_pred             chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc---eEEEEEC-----CC-eEEEeEEEECcCCcccCC
Confidence            3467888888999889999987 77777776552   2223332     22 399999999999977433

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.02  E-value=1.3e-08  Score=98.36  Aligned_cols=60  Identities=20%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+.++|.+.+...|++++++++|.+|..++++ ++++|+..   +|  ..++||.||.....+..
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g-~~~~V~~~---~G--e~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENG-KVCGVKSE---GG--EVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCC-eEEEEEEC---CC--cEEECCEEEECcccccc
Confidence            578999999999999999999999999988767 88888764   34  37899999986666543

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.02  E-value=2.5e-08  Score=100.26  Aligned_cols=36  Identities=33%  Similarity=0.487  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+..+|+|||||++||++|+.|+++|++|+|+||..
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456899999999999999999999999999999974

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.00  E-value=2e-09  Score=98.20  Aligned_cols=77  Identities=19%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCC-------ceEEEEcCEEEEccCCC---
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG-------KEFDTYAKVVVNAAGPF---  295 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g-------~~~~i~a~~VVlAtG~~---  295 (442)
                      +.-..++.+|-+.+++.||+|+-+..+..+..+++| .|.||...+.   ++|       ++..+.|+..|+|-|..   
T Consensus       180 v~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edg-sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L  258 (621)
T KOG2415|consen  180 VSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDG-SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL  258 (621)
T ss_pred             EEHHHHHHHHHHHHHhhCceeccccchhheeEcCCC-cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence            445789999999999999999999999999999888 9999987642   122       23468999999998875   


Q ss_pred             hHHHhhhhCCC
Q 013476          296 CDSVRKLADQN  306 (442)
Q Consensus       296 s~~l~~~~g~~  306 (442)
                      +.++.+.++++
T Consensus       259 skqi~kkf~Lr  269 (621)
T KOG2415|consen  259 SKQIIKKFDLR  269 (621)
T ss_pred             HHHHHHHhCcc
Confidence            45777777665

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.99  E-value=4.5e-09  Score=97.83  Aligned_cols=33  Identities=30%  Similarity=0.553  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      |||+|||||++|+++|..|++.|.+|+|||+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            699999999999999999999999999999975

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07233 hypothetical protein; Provisional

Probab=98.99  E-value=2.4e-08  Score=98.08  Aligned_cols=56  Identities=21%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ..+.+.|.+.+++.|++|+++++|++|+.+++  +++.+..    ++  ..+.||.||+|+...
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~--~~~~~~~----~~--~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGG--GVTGVEV----DG--EEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC--ceEEEEe----CC--ceEECCEEEECCCHH
Confidence            57889999999999999999999999998774  5654542    22  378999999999863

>PLN02612 phytoene desaturase

Probab=98.96  E-value=5.3e-08  Score=98.04  Aligned_cols=57  Identities=14%  Similarity=0.095  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      ..++..|.+.+++.|++|+++++|++|..++++ ++++|++.   +|  ..+.||.||+|+..
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g-~v~~v~~~---~G--~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDG-TVKHFLLT---NG--SVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCC-cEEEEEEC---CC--cEEECCEEEECCCH
Confidence            568889999998899999999999999987666 77777763   34  36899999999975

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.94  E-value=3.5e-08  Score=98.52  Aligned_cols=68  Identities=22%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             HHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCC-ceEEEEcCEEEEccCCC-hHHHhhhhCCC
Q 013476          237 GLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSG-KEFDTYAKVVVNAAGPF-CDSVRKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g-~~~~i~a~~VVlAtG~~-s~~l~~~~g~~  306 (442)
                      .++..+.+ .+.+|++++.|++|+.+++  ++++|++.....+ ....+.++.||+|+|.. |+.|+...|+.
T Consensus       207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~--r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig  277 (542)
T COG2303         207 AYLKPALKRPNLTLLTGARVRRILLEGD--RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG  277 (542)
T ss_pred             hcchhHhcCCceEEecCCEEEEEEEECC--eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence            34444444 4699999999999999984  8999998752222 24456779999999995 67888777653

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.93  E-value=2.2e-08  Score=100.78  Aligned_cols=65  Identities=18%  Similarity=0.121  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      ..++..|.+.+++.|++|+.++.+++|+.++ | +|+||++.+..+|+...+.||.||+|||+++..
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g-~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLMED-G-ECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence            5688899999999999999999999999865 7 999999865456776789999999999999853

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.92  E-value=4.6e-08  Score=96.73  Aligned_cols=39  Identities=38%  Similarity=0.607  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      +.+|||+|||||++|+.+|+.|++.|++|+|||+.. +++
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG   42 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG   42 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccc
Confidence            456999999999999999999999999999999974 544

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.90  E-value=2.8e-08  Score=97.56  Aligned_cols=37  Identities=32%  Similarity=0.512  Sum_probs=34.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      +|||+|||||++|++||+.|+++|++|+|+|+..+++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG   38 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGG   38 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCc
Confidence            5999999999999999999999999999999975544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06370 mercuric reductase; Validated

Probab=98.88  E-value=4.4e-08  Score=96.83  Aligned_cols=42  Identities=33%  Similarity=0.493  Sum_probs=37.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS  110 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s  110 (442)
                      +.+|||||||+|++|+++|+.|++.|++|+|||+..+++.+.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~   44 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCV   44 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCcee
Confidence            456999999999999999999999999999999987665543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.88  E-value=3.6e-08  Score=96.82  Aligned_cols=39  Identities=38%  Similarity=0.537  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG  108 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g  108 (442)
                      ++|||+|||||++|++||+.|++.|++|+||||..+++.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~   39 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGT   39 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccc
Confidence            359999999999999999999999999999999765443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.88  E-value=7.2e-09  Score=89.56  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+|+|||+||+|++||+.|+++|.+|+|+||+.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~   34 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR   34 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence            579999999999999999999999999999986

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.87  E-value=6.1e-08  Score=95.67  Aligned_cols=38  Identities=34%  Similarity=0.640  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc-CCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE-DFSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~-~~~~  107 (442)
                      ++|||+|||+|++|++||..|++.|++|+|||+. .+++
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG   40 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG   40 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence            4599999999999999999999999999999974 4443

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.87  E-value=2.1e-08  Score=100.30  Aligned_cols=57  Identities=19%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++.|++++++++|.++..+++.  . .|.+   .++  ..+.+|.||+|||...
T Consensus       266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~--~-~V~~---~~g--~~i~a~~vViAtG~~~  322 (517)
T PRK15317        266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL--I-EVEL---ANG--AVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe--E-EEEE---CCC--CEEEcCEEEECCCCCc
Confidence            456778888888899999999999999887533  2 2333   233  3689999999999854

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.87  E-value=9.6e-08  Score=84.93  Aligned_cols=65  Identities=22%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhh
Q 013476          233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKL  302 (442)
Q Consensus       233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~  302 (442)
                      .+-+.|.+.+++.|+.+..+.+|.+....+ + +|+.|.+++   .....+.|+..|+|+|.| |+.|...
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~-~v~~i~trn---~~diP~~a~~~VLAsGsffskGLvae  324 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-G-RVTEIYTRN---HADIPLRADFYVLASGSFFSKGLVAE  324 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeC-C-eEEEEEecc---cccCCCChhHeeeeccccccccchhh
Confidence            445677778889999999999999999887 5 999999975   234689999999999994 6555554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.86  E-value=3e-08  Score=99.79  Aligned_cols=35  Identities=31%  Similarity=0.653  Sum_probs=32.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .|||+|||||++|++||++|+++|++|+|||+...
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~   38 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF   38 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            49999999999999999999999999999999653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.86  E-value=2.1e-07  Score=84.51  Aligned_cols=61  Identities=13%  Similarity=0.154  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      .++...+.+.++++|.+|+++++|+....+++| .|. |++++..+++..+++||.+.+|.|.
T Consensus       252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg-~v~-i~ve~ak~~k~~tle~DvlLVsiGR  312 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDG-PVE-IEVENAKTGKKETLECDVLLVSIGR  312 (506)
T ss_pred             HHHHHHHHHHHHhcCceeEeccEEEEeeccCCC-ceE-EEEEecCCCceeEEEeeEEEEEccC
Confidence            566778888888999999999999999999886 554 7788777888889999999999997

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.86  E-value=3.5e-08  Score=97.84  Aligned_cols=64  Identities=25%  Similarity=0.183  Sum_probs=45.8

Q ss_pred             cChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcCCC-----CeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEAS-----NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~~g-----~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .+..++.+.|...++..+.  .|++||+|+++.+.++.     |.|   +.+  .+|+..+-..|+||+|+|.++.
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V---~~~--~~g~~~~~~fD~VvvatG~~~~  151 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEV---TTE--NDGKEETEEFDAVVVATGHFSK  151 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEE---EET--TTTEEEEEEECEEEEEE-SSSC
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEE---Eee--cCCeEEEEEeCeEEEcCCCcCC
Confidence            3446788888888988775  68999999999886532     333   332  4555555667999999999874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.85  E-value=2.1e-07  Score=91.89  Aligned_cols=62  Identities=13%  Similarity=0.040  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHcCceEecCeEEEEEEEcC--CCCe-EEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          233 RLNVGLALTAALAGAAVLNHAEVISLIKDE--ASNR-IIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~--~g~~-v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+.+.+.+.++++|++|+++++|++|..++  ++|+ |++|.+.+ .++ ...+.||+||+|+..+.
T Consensus       220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g~~-~~~~~aD~VVlA~p~~~  284 (474)
T TIGR02732       220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-PEG-KKVIKADAYVAACDVPG  284 (474)
T ss_pred             hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-CCc-ceEEECCEEEECCChHH
Confidence            356778899999999999999999998864  3543 88888753 111 24589999999999864

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.85  E-value=1.8e-08  Score=96.77  Aligned_cols=63  Identities=13%  Similarity=0.056  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          230 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +..++++.|...|+..+.  .|.++++|..+.... +-|+|   ..++ ..+.....-+|.||+|||-+.
T Consensus        88 ~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V---~~~~-~~~~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen   88 SHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRV---TTKD-NGTQIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             CHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeE---EEec-CCcceeEEEeeEEEEcccCcC
Confidence            335788888888888764  788999999998876 35665   4443 122134677899999999996

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.84  E-value=1.3e-07  Score=92.32  Aligned_cols=70  Identities=23%  Similarity=0.223  Sum_probs=51.9

Q ss_pred             HHHHHHHHH--cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCC-ChHHHhhhhCCC
Q 013476          236 VGLALTAAL--AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~--~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~-~s~~l~~~~g~~  306 (442)
                      .++++.+..  .+..+..++.|++|..|..+-+..||+... +.++..+++| |-|||++|+ .|++|+-+.|+.
T Consensus       256 ~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIG  329 (623)
T KOG1238|consen  256 KAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVR-DGGKEHTVKARKEVILSAGAINSPQLLMLSGIG  329 (623)
T ss_pred             hhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEe-cCceeeeecccceEEEeccccCCHHHHHHcCCC
Confidence            344444443  378888999999999985454899999875 3256667788 669999999 578998777764

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.84  E-value=3.8e-08  Score=92.04  Aligned_cols=39  Identities=23%  Similarity=0.497  Sum_probs=35.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      .+.+||||||+|.+||++|+.|.+.|++|+|+|.++..+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence            567999999999999999999999999999999997433

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.83  E-value=6.3e-08  Score=94.31  Aligned_cols=36  Identities=25%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLR-VGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~  104 (442)
                      +..+||+|||||.+|+++|++|.++|.. ++|+||+.
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~   42 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD   42 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence            4569999999999999999999999998 99999996

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.83  E-value=1e-07  Score=94.48  Aligned_cols=38  Identities=34%  Similarity=0.651  Sum_probs=34.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      ..|||+|||||++|+++|..|++.|++|+|||+..+++
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG   40 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGG   40 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCc
Confidence            36999999999999999999999999999999976544

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.83  E-value=1.2e-07  Score=92.50  Aligned_cols=65  Identities=8%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      .++...+...|.+.+.  +..++++++|++|..++++  + .|...   +|.  ++.||.||.|+|.+| .+++.+
T Consensus       101 ~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~-~v~~~---~g~--~~~ad~vVgADG~~S-~vR~~l  165 (414)
T TIGR03219       101 SVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEE--V-QVLFT---DGT--EYRCDLLIGADGIKS-ALRDYV  165 (414)
T ss_pred             cCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCc--E-EEEEc---CCC--EEEeeEEEECCCccH-HHHHHh
Confidence            3566778888877653  3567899999999987754  2 23332   343  689999999999999 455543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.83  E-value=1.2e-07  Score=93.70  Aligned_cols=35  Identities=34%  Similarity=0.486  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+|||+|||||.+|+.+|..|++.|++|+|||+.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            35999999999999999999999999999999974

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.82  E-value=6.7e-09  Score=98.52  Aligned_cols=64  Identities=25%  Similarity=0.293  Sum_probs=48.4

Q ss_pred             cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .++|...+-..+.+.++.. +..++ ...|++|+.+++. +|.||++.   +|  ..+.|+.||++||-|..
T Consensus        95 aQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~-~v~GV~t~---~G--~~~~a~aVVlTTGTFL~  159 (621)
T COG0445          95 AQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQ-RVVGVVTA---DG--PEFHAKAVVLTTGTFLR  159 (621)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCC-eEEEEEeC---CC--CeeecCEEEEeeccccc
Confidence            4566667777887777765 77875 5678888886643 69999885   34  48999999999997764

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.82  E-value=1.5e-07  Score=86.78  Aligned_cols=34  Identities=26%  Similarity=0.582  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.+|||||||++||++|+.|++.|++|+|+|+..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            4689999999999999999999999999999975

>PRK06116 glutathione reductase; Validated

Probab=98.82  E-value=7.9e-08  Score=94.70  Aligned_cols=37  Identities=38%  Similarity=0.623  Sum_probs=34.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      +|||+|||||++|+++|+.|+++|++|+|||+..+++
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG   40 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG   40 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence            5999999999999999999999999999999975544

>PTZ00058 glutathione reductase; Provisional

Probab=98.81  E-value=7.4e-08  Score=96.19  Aligned_cols=41  Identities=34%  Similarity=0.517  Sum_probs=36.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT  109 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~  109 (442)
                      ..+|||||||+|.+|.++|..|++.|++|+||||..+++.|
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtC   86 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTC   86 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccc
Confidence            35699999999999999999999999999999998655433

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.79  E-value=1.3e-07  Score=93.58  Aligned_cols=38  Identities=39%  Similarity=0.652  Sum_probs=34.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      .+|||+|||||++|+++|..|+++|++|+||||..+++
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG   40 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGG   40 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            35999999999999999999999999999999987433

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.79  E-value=2e-07  Score=92.16  Aligned_cols=40  Identities=30%  Similarity=0.503  Sum_probs=35.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS  110 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s  110 (442)
                      +|||+|||+|++|++||..|++.|++|+|||++.+++.+.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~   43 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCL   43 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Confidence            5999999999999999999999999999999986655443

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.78  E-value=1.3e-07  Score=87.55  Aligned_cols=58  Identities=29%  Similarity=0.500  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+..++.+.++++|.+|+++..|++|..|+ | +++||.+.+   |  ..+.+|.||--++.|-
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-g-ka~GV~L~d---G--~ev~sk~VvSNAt~~~  321 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS-G-KAVGVRLAD---G--TEVRSKIVVSNATPWD  321 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheeccC-C-eEEEEEecC---C--cEEEeeeeecCCchHH
Confidence            5678899999999999999999999999988 7 999999964   4  3788899998888876

>PLN02507 glutathione reductase

Probab=98.78  E-value=2.7e-07  Score=91.62  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER  102 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk  102 (442)
                      ..+|||+|||+|.+|+.+|..|++.|++|+|||+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3459999999999999999999999999999997

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.77  E-value=6.4e-08  Score=96.68  Aligned_cols=57  Identities=19%  Similarity=0.172  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++.|++++.+++|+++..+++.  . .|.+   .++.  .+.+|.+|+|||...
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~-~v~~---~~g~--~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGL--I-VVTL---ESGE--VLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe--E-EEEE---CCCC--EEEeCEEEECCCCCc
Confidence            346667777788889999999999999876633  2 2333   2333  689999999999853

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.76  E-value=1.1e-07  Score=89.39  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      +..+||+|||||++|++||..|+++|++|+|||+...
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~   40 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   40 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence            5679999999999999999999999999999997543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.76  E-value=3e-07  Score=91.11  Aligned_cols=33  Identities=39%  Similarity=0.654  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVER  102 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk  102 (442)
                      .+|||+|||+|++|+++|++|++.|++|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            359999999999999999999999999999998

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.75  E-value=8.3e-07  Score=87.85  Aligned_cols=60  Identities=15%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+...+.+.+++.|+++++++++.++..+++  ++. +..   .+|+...+.+|.||+|+|...+
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v~-v~~---~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDD--QVV-YEN---KGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEE-EEE---eCCcEEEEEeCEEEEecCCccc
Confidence            34566777788889999999999999987663  443 332   2343357999999999998653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.75  E-value=2.1e-07  Score=91.98  Aligned_cols=41  Identities=41%  Similarity=0.626  Sum_probs=36.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG  108 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g  108 (442)
                      ....|||+|||||++|+++|..|++.|++|+|||++.+++.
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt   43 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT   43 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence            35679999999999999999999999999999999865443

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.75  E-value=2.6e-07  Score=86.07  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      -|.-.-..++..+.+.+++.|++|+++|+|.+|+.+++  .+.+|...+     ...+.++.||+|.|..+.++..++
T Consensus       167 iGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~-----g~~i~~~~vvlA~Grsg~dw~~~l  237 (486)
T COG2509         167 IGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTK-----GEEIEADYVVLAPGRSGRDWFEML  237 (486)
T ss_pred             cCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC--ceEEEEccC-----CcEEecCEEEEccCcchHHHHHHH
Confidence            34445578889999999999999999999999999884  677777642     348999999999999776665443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.75  E-value=2.3e-07  Score=91.12  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|||||||||++|+++|..|++.|++|+||||..
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            46999999999999999999999999999999985

>PLN02487 zeta-carotene desaturase

Probab=98.75  E-value=2.5e-07  Score=92.35  Aligned_cols=62  Identities=15%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHcCceEecCeEEEEEEEcC--CCC-eEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          233 RLNVGLALTAALAGAAVLNHAEVISLIKDE--ASN-RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~--~g~-~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+.+.+.+.++++|++|+++++|.+|..++  +|+ +|+||++..  +++...+.+|.||+|++.+.
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~  360 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG  360 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence            478899999999999999999999999873  232 488998842  22334688999999999864

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.69  E-value=2.8e-08  Score=69.34  Aligned_cols=32  Identities=34%  Similarity=0.522  Sum_probs=28.7

Q ss_pred             EECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           76 VIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        76 VVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      |||||++||++|+.|+++|++|+|+|+.+..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999997443

...

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.66  E-value=3.1e-07  Score=76.27  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=28.4

Q ss_pred             EEECCChHHHHHHHHHHHC-----CCeEEEEeccCCC
Q 013476           75 LVIGGGATGCGVALDAATR-----GLRVGLVEREDFS  106 (442)
Q Consensus        75 vVVGaG~aGl~aA~~La~~-----G~~V~liEk~~~~  106 (442)
                      +|||+|+.|++++.+|.++     ..+|+|+|+...+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G   37 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFG   37 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcc
Confidence            5999999999999999988     4689999997664

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.66  E-value=5.2e-07  Score=87.21  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ..+.+.+.+.+++.|+++++++++++++.+++  . ..+.+++   +....+.+|.|++|+|.-
T Consensus       214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~-v~v~~~~---g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDD--G-VLVTLED---GEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             HHHHHHHHHHHHhCCeEEEccceEEEEEecCC--e-EEEEEec---CCCCEEEeeEEEEccCCc
Confidence            56677888888888899999999999988774  3 3355543   333378999999999984

>PLN02546 glutathione reductase

Probab=98.65  E-value=6.4e-07  Score=89.61  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER  102 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk  102 (442)
                      ..+|||+|||+|.+|..+|..|++.|++|+|||+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3459999999999999999999999999999996

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.64  E-value=8.9e-07  Score=77.09  Aligned_cols=32  Identities=38%  Similarity=0.740  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ||||||||++|+++|.+|++.|.+|+|+|+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999999999998864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK09897 hypothetical protein; Provisional

Probab=98.62  E-value=9.4e-07  Score=87.45  Aligned_cols=38  Identities=24%  Similarity=0.412  Sum_probs=32.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEeccC-CCCCC
Q 013476           72 LDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGT  109 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~-~~~g~  109 (442)
                      .+|+|||||.+|+++|.+|++.+  .+|+|+|+.. ++.|.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~   42 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM   42 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence            58999999999999999999864  4899999975 54443

>PRK13748 putative mercuric reductase; Provisional

Probab=98.61  E-value=9.4e-07  Score=89.70  Aligned_cols=39  Identities=38%  Similarity=0.641  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG  108 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g  108 (442)
                      .+|||||||||++|+++|..|++.|++|+|||++.+++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~  135 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT  135 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence            469999999999999999999999999999999865443

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.59  E-value=1.5e-06  Score=86.06  Aligned_cols=33  Identities=39%  Similarity=0.606  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +|||||||+|.+|+.+|+.|++.|++|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            499999999999999999999999999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.58  E-value=9.6e-07  Score=89.63  Aligned_cols=34  Identities=32%  Similarity=0.563  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .+|||+|||+|.+|..+|..|++.|++|+|||+.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3699999999999999999999999999999975

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.58  E-value=2.2e-06  Score=89.65  Aligned_cols=55  Identities=18%  Similarity=0.134  Sum_probs=42.0

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      .+....+...|.+.+++.|++|+++++++++..                    ..+.+|.||.|+|.+| .+++.+
T Consensus        93 ~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--------------------~~~~~D~VVgADG~~S-~vR~~~  147 (765)
T PRK08255         93 GIGRKRLLNILQARCEELGVKLVFETEVPDDQA--------------------LAADADLVIASDGLNS-RIRTRY  147 (765)
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--------------------hhcCCCEEEEcCCCCH-HHHHHH
Confidence            356678999999999999999999988765421                    1247899999999998 355543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.55  E-value=2e-06  Score=85.00  Aligned_cols=34  Identities=32%  Similarity=0.566  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk~  103 (442)
                      ++|||+|||+|.+|..+|..|++. |++|+|||+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            469999999999999999999997 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02529 lysine-specific histone demethylase 1

Probab=98.55  E-value=2.3e-06  Score=87.45  Aligned_cols=35  Identities=20%  Similarity=0.422  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...||+|||||++|++||..|+++|++|+|+|+..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~  193 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN  193 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence            34799999999999999999999999999999986

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.54  E-value=3e-06  Score=83.73  Aligned_cols=36  Identities=39%  Similarity=0.630  Sum_probs=33.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      .||+|||+|.+|+.+|..|+++|.+|+||||..+++
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG   37 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGG   37 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCC
Confidence            489999999999999999999999999999987544

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.54  E-value=2.3e-06  Score=85.07  Aligned_cols=33  Identities=39%  Similarity=0.643  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|||+|||||++|++||..|+++|++|+|||+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            599999999999999999999999999999973

>PRK12831 putative oxidoreductase; Provisional

Probab=98.53  E-value=2.7e-06  Score=83.70  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ....||+|||||++|+++|++|++.|++|+|+|+...
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~  174 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE  174 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            3458999999999999999999999999999999763

>PLN02676 polyamine oxidase

Probab=98.53  E-value=2.7e-06  Score=84.21  Aligned_cols=38  Identities=21%  Similarity=0.463  Sum_probs=33.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSG  108 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~~~g  108 (442)
                      .+||+|||||++||+||++|+++|. +|+|+|++...+|
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            4899999999999999999999998 5999999973333

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.52  E-value=1.7e-06  Score=92.82  Aligned_cols=36  Identities=42%  Similarity=0.578  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ..+||+|||||++|++||+.|++.|++|+|+|+...
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~  197 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE  197 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            468999999999999999999999999999999853

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.52  E-value=7.2e-07  Score=87.56  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....||+|||+|++|+++|+.|++.|++|+|+|+..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~  166 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH  166 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            345899999999999999999999999999999986

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.51  E-value=2.6e-06  Score=87.77  Aligned_cols=58  Identities=24%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC------C---------CCceEEEEcCEEEEccCCCh
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~------~---------~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+++.|++|++++.+.++..+++| +|++|++...      .         +|+...+.+|.||+|.|--.
T Consensus       512 e~~~~~~~Gv~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p  584 (654)
T PRK12769        512 EVKNAREEGANFEFNVQPVALELNEQG-HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNP  584 (654)
T ss_pred             HHHHHHHcCCeEEeccCcEEEEECCCC-eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCC
Confidence            345677899999999999999876557 8999886421      1         23345799999999999654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.49  E-value=4.7e-07  Score=95.74  Aligned_cols=35  Identities=29%  Similarity=0.275  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...+|+|||||+|||+||+.|++.|++|+|+|+.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            35789999999999999999999999999999975

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1.9e-06  Score=77.06  Aligned_cols=71  Identities=13%  Similarity=0.066  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +.+.+.+.+.++++|+.|...+...++++-++| +. -|..++..+++...-..+.|+.|.|.-+  +.+.++++
T Consensus       238 qdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g-~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~--~~~~l~L~  308 (503)
T KOG4716|consen  238 QDMAELVAEHMEERGIKFLRKTVPERVEQIDDG-KL-RVFYKNTNTGEEGEEEYDTVLWAIGRKA--LTDDLNLD  308 (503)
T ss_pred             HHHHHHHHHHHHHhCCceeecccceeeeeccCC-cE-EEEeecccccccccchhhhhhhhhcccc--chhhcCCC
Confidence            566777778889999999998888899887776 53 3555543455555556799999999855  44555544

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.46  E-value=2.1e-06  Score=84.92  Aligned_cols=67  Identities=15%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECC---------CCceEEEEcCEEEEccCCChH--HHhhhhCCC
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL---------SGKEFDTYAKVVVNAAGPFCD--SVRKLADQN  306 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~---------~g~~~~i~a~~VVlAtG~~s~--~l~~~~g~~  306 (442)
                      ..+.+++.|+++++++.+++|..++ | +|++|++....         +++...+.+|.||+|+|...+  .+++.+|+.
T Consensus       335 ~~~~~~~~GV~i~~~~~~~~i~~~~-g-~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~  412 (471)
T PRK12810        335 EVSNAHEEGVEREFNVQTKEFEGEN-G-KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVE  412 (471)
T ss_pred             HHHHHHHcCCeEEeccCceEEEccC-C-EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcc
Confidence            3456678899999999999997544 6 89988764211         234468999999999996543  355555443

>PRK14727 putative mercuric reductase; Provisional

Probab=98.45  E-value=4.8e-06  Score=82.62  Aligned_cols=39  Identities=31%  Similarity=0.550  Sum_probs=34.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      +.++||+|||+|.+|+++|+.|++.|.+|+|||+.. +++
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG   53 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG   53 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence            456999999999999999999999999999999974 433

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=5.6e-07  Score=83.95  Aligned_cols=36  Identities=39%  Similarity=0.682  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .+..|||||||||-||+-||..+|+.|.+.+|+-.+
T Consensus        25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            356799999999999999999999999999999887

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.39  E-value=9.8e-06  Score=80.02  Aligned_cols=37  Identities=35%  Similarity=0.628  Sum_probs=33.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT  109 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~  109 (442)
                      +|+|||+|.+|+++|..|++.|++|+|||+..+++.|
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c   38 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTC   38 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccC
Confidence            7999999999999999999999999999998765433

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.37  E-value=1e-05  Score=58.72  Aligned_cols=31  Identities=45%  Similarity=0.661  Sum_probs=29.8

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      |+|||||..|+-+|..|++.|.+|+||++.+
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence            8999999999999999999999999999975

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.36  E-value=3.2e-06  Score=88.52  Aligned_cols=35  Identities=34%  Similarity=0.467  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...+|+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            34689999999999999999999999999999975

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.35  E-value=2.9e-06  Score=83.75  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+...
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~  174 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK  174 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            447999999999999999999999999999999863

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.35  E-value=4.7e-06  Score=89.13  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC------C--------CCceEEEEcCEEEEccCCChH
Q 013476          240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L--------SGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~------~--------~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +.+++.|++|++++.+.++..+++| +|++|++...      .        +|+...+.+|.||+|.|--.+
T Consensus       617 ~~a~eeGI~~~~~~~p~~i~~~~~G-~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~  687 (1006)
T PRK12775        617 RHAKEEGIDFFFLHSPVEIYVDAEG-SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKAN  687 (1006)
T ss_pred             HHHHhCCCEEEecCCcEEEEeCCCC-eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCC
Confidence            4567789999999999999876667 9999877521      1        233357999999999997543

>PRK07846 mycothione reductase; Reviewed

Probab=98.34  E-value=9e-06  Score=79.94  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT  109 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~  109 (442)
                      +|||+|||+|.+|..+|..+  .|++|+|||+..+++.|
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC   37 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTC   37 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcc
Confidence            38999999999999988764  59999999997765544

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.33  E-value=5.9e-07  Score=88.27  Aligned_cols=57  Identities=12%  Similarity=0.146  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+...+.+.++++|+++++++++.++..++ + .+   .+.. .+   ..+.+|.||+|+|...+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~-~v---~v~~-~~---g~i~~D~vl~a~G~~pn  255 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHE-N-QV---QVHS-EH---AQLAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-C-EE---EEEE-cC---CeEEeCEEEEeecCCcC
Confidence            4566777888889999999999999998765 3 43   2332 12   25889999999998764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.33  E-value=2.9e-06  Score=83.62  Aligned_cols=32  Identities=34%  Similarity=0.578  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRG--LRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~  104 (442)
                      +|||||||++|+++|..|++.+  .+|+|||+++
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~   35 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD   35 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence            5999999999999999999875  5899999975

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.33  E-value=1.9e-05  Score=77.99  Aligned_cols=36  Identities=28%  Similarity=0.336  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...+|+|||+|++|+++|+.|++.|++|+|+|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            347899999999999999999999999999999863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.33  E-value=6.7e-07  Score=87.66  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=35.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      .+..+|+|||||++||+||..|.+.|.+|+|+|+.+ +||
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            556899999999999999999999999999999997 443

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.32  E-value=8.8e-06  Score=76.47  Aligned_cols=62  Identities=24%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCC-eEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASN-RIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~-~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      .++.+.+.-.+++..-.++++++|++|..+.++- ...-|++++ .+|....+.|+.||+|+|.
T Consensus        95 ~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~  157 (341)
T PF13434_consen   95 REFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGG  157 (341)
T ss_dssp             HHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----
T ss_pred             HHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCC
Confidence            3444555445555566688999999998765320 244456655 5677789999999999994

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.31  E-value=1.9e-05  Score=81.01  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      ...+|+|||+|++|+++|+.|++.|++|+|+|+.+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            3578999999999999999999999999999998743

>TIGR03452 mycothione_red mycothione reductase

Probab=98.29  E-value=8.6e-06  Score=80.15  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT  109 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~  109 (442)
                      +|||||||+|.+|..+|..  ..|++|+|||+..+++.|
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC   38 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTC   38 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCee
Confidence            4999999999999988654  469999999997665433

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.27  E-value=9e-05  Score=70.19  Aligned_cols=63  Identities=24%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      .+.++.....+.++++||++++++.|+++..++       |+++   +|+. .|.|+.||.|+|.-.+.+.+.+
T Consensus       207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-------v~~~---~g~~-~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-------VTLK---DGEE-EIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-------EEEc---cCCe-eEecCEEEEcCCCcCChhhhhc
Confidence            346777788888999999999999999997653       4553   3332 6999999999999998888864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.25  E-value=1.2e-06  Score=86.63  Aligned_cols=39  Identities=33%  Similarity=0.538  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      |.+|||||||||++|+++|..|++.|++|+|||+..+++
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG   39 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG   39 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence            346999999999999999999999999999999954543

>PLN02576 protoporphyrinogen oxidase

Probab=98.21  E-value=1.8e-06  Score=86.40  Aligned_cols=38  Identities=29%  Similarity=0.521  Sum_probs=34.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEeccC-CCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVERED-FSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk~~-~~~  107 (442)
                      .++||+|||||++||++|++|+++ |.+|+|+|+.+ +++
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            347999999999999999999999 99999999997 544

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.19  E-value=1.1e-05  Score=81.74  Aligned_cols=37  Identities=27%  Similarity=0.331  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      ...+|+|||+|++||++|+.|++.|++|+|+|+.+..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3468999999999999999999999999999998633

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.19  E-value=2.2e-06  Score=81.15  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=33.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      +||+|||||++|+++|++|++.|.+|+|||+.. +++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            799999999999999999999999999999986 443

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02053 MerA mercuric reductase

Probab=98.18  E-value=2e-06  Score=85.17  Aligned_cols=60  Identities=15%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++.|++++++++|+++..+++  . ..+.+..  ++...++.+|.||+|+|.-.
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~-~~v~~~~--~~~~~~i~~D~ViiA~G~~p  266 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGG--G-KIITVEK--PGGQGEVEADELLVATGRRP  266 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--E-EEEEEEe--CCCceEEEeCEEEEeECCCc
Confidence            34556677778889999999999999987653  2 2244432  22335799999999999754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.18  E-value=2.6e-06  Score=75.92  Aligned_cols=38  Identities=34%  Similarity=0.549  Sum_probs=35.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGT  109 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~  109 (442)
                      +|++|||||++|+..|..|++.|.+|+||||.. ++|.|
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa   40 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA   40 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence            899999999999999999999999999999997 66654

>PLN02268 probable polyamine oxidase

Probab=98.18  E-value=2.1e-06  Score=84.36  Aligned_cols=36  Identities=31%  Similarity=0.538  Sum_probs=33.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      .+|+|||||++||+||+.|.++|++|+|+|+.+ +++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            479999999999999999999999999999997 444

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.15  E-value=1.4e-05  Score=71.99  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSG  108 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g  108 (442)
                      ...+|.|||+|++||+||+.|+++ ++|+|+|+.. .++.
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh   45 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH   45 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence            347899999999999999999975 6999999996 5443

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.15  E-value=1.5e-05  Score=78.17  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      +|||||||++|+.+|..|.+.  +.+|+|||+++
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~   36 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR   36 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            799999999999999999987  67899999975

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=2.3e-06  Score=81.81  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=32.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      .|+|+|||+|||+||++|+++|++|+|+|+++..+
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G   36 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG   36 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence            59999999999999999999999999999997443

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.13  E-value=3.4e-05  Score=72.84  Aligned_cols=69  Identities=17%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSV  299 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l  299 (442)
                      ....++.+|...+++.||+|+++++|++|  ++++   ..+.+.   ++ ...++||.||+|||+.+          -.+
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~---~~v~~~---~~-~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~l  154 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT---LRFETP---DG-QSTIEADAVVLALGGASWSQLGSDGAWQQV  154 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc---EEEEEC---CC-ceEEecCEEEEcCCCccccccCCCcHHHHH
Confidence            45788999999999999999999999999  3322   334442   22 23689999999999854          378


Q ss_pred             hhhhCCCC
Q 013476          300 RKLADQNV  307 (442)
Q Consensus       300 ~~~~g~~~  307 (442)
                      ++.+|.++
T Consensus       155 a~~lGh~i  162 (376)
T TIGR03862       155 LDQRGVSV  162 (376)
T ss_pred             HHHCCCcc
Confidence            88888775

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.12  E-value=6.8e-05  Score=71.77  Aligned_cols=63  Identities=16%  Similarity=0.107  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEE--Ec-CEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDT--YA-KVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i--~a-~~VVlAtG~~s  296 (442)
                      ..++..|.+.++++||+|+++++|++|+.+.+  ...++.+.+.  .+|+...|  .- |.|++..|.-+
T Consensus       207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccc
Confidence            56788899999999999999999999987532  2145566665  35554444  33 78888888643

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=98.12  E-value=5.1e-05  Score=72.85  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             EEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          221 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       221 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+++..|.   .++.+.+.+.+.-.|+.+.+++++.+|..+++| ++.||..    +  ...++||.||.. ..|.
T Consensus       224 fLyP~YG~---GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g-~~~gV~s----~--ge~v~~k~vI~d-psy~  288 (438)
T PF00996_consen  224 FLYPLYGL---GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDG-KVIGVKS----E--GEVVKAKKVIGD-PSYL  288 (438)
T ss_dssp             EEEETT-T---THHHHHHHHHHHHTT-EEESS--EEEEEEETTT-EEEEEEE----T--TEEEEESEEEEE-GGGB
T ss_pred             EEEEccCC---ccHHHHHHHHhhhcCcEEEeCCccceeeeecCC-eEEEEec----C--CEEEEcCEEEEC-CccC
Confidence            34454442   589999999998899999999999999987667 8988764    2  358999999943 3344

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.12  E-value=2.8e-06  Score=83.93  Aligned_cols=35  Identities=31%  Similarity=0.601  Sum_probs=31.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC-CCC
Q 013476           73 DILVIGGGATGCGVALDAATRG--LRVGLVERED-FSS  107 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~-~~~  107 (442)
                      +|+|||||++||+||+.|+++|  ++|+|+|+.+ +++
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG   39 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG   39 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence            6999999999999999999988  8999999997 443

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.2e-05  Score=67.78  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      ..+++.|.+++++.|.+|+.+ .|.++..+..-++   +..      +.+.+.|+.||+|||+-+.+|
T Consensus        70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~---l~t------d~~~v~~~avI~atGAsAkRl  127 (322)
T KOG0404|consen   70 PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFK---LWT------DARPVTADAVILATGASAKRL  127 (322)
T ss_pred             HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeE---EEe------cCCceeeeeEEEecccceeee
Confidence            578899999999999999764 5788877653222   222      134799999999999977544

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.08  E-value=3.7e-05  Score=69.30  Aligned_cols=38  Identities=39%  Similarity=0.602  Sum_probs=34.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE-DFS  106 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~-~~~  106 (442)
                      .++||.+|||||..|+++|..+++.|++|.|+|.. .++
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lG   56 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLG   56 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcC
Confidence            45699999999999999999999999999999987 343

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.08  E-value=3.9e-06  Score=83.20  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=33.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHC----CCeEEEEeccC-CCC
Q 013476           72 LDILVIGGGATGCGVALDAATR----GLRVGLVERED-FSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~-~~~  107 (442)
                      .||+|||||++||++|++|+++    |++|+|+|+.+ +++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG   43 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG   43 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence            6999999999999999999999    99999999997 444

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.07  E-value=2.1e-05  Score=76.14  Aligned_cols=35  Identities=23%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      ...+|||||||++|+++|..|+++|.  +|+||++..
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            34689999999999999999999886  799999874

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.06  E-value=4.9e-06  Score=79.01  Aligned_cols=33  Identities=36%  Similarity=0.476  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            599999999999999999999999999999875

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.05  E-value=7.7e-06  Score=76.80  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             HHHHHHHH-HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC----ChHHHhhhhCCCC
Q 013476          236 VGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP----FCDSVRKLADQNV  307 (442)
Q Consensus       236 ~~l~~~~~-~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~----~s~~l~~~~g~~~  307 (442)
                      +-+....+ +.|+++..+ ++..+....++ + .-|.+++...|+...+.+|.|||++|-    .+..+.+.+|+..
T Consensus       418 EefY~~~Q~~~gV~fIRG-rvaei~e~p~~-~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~  491 (622)
T COG1148         418 EEFYVRSQEDYGVRFIRG-RVAEIAEFPKK-K-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQ  491 (622)
T ss_pred             HHHHHhhhhhhchhhhcC-ChHHheeCCCC-e-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCccc
Confidence            34444444 668888755 55566666655 5 447777766777788999999999995    2357888888764

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.02  E-value=1.3e-05  Score=76.74  Aligned_cols=32  Identities=34%  Similarity=0.530  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHHC---CCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATR---GLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~---G~~V~liEk~~  104 (442)
                      .|||||||++|+.+|..|.++   +.+|+|||++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~   35 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS   35 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence            489999999999999999643   68999999874

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.02  E-value=9.9e-05  Score=71.01  Aligned_cols=62  Identities=23%  Similarity=0.228  Sum_probs=44.3

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      .+.+.+++.|+++++++++.++..+++  .+ .|.+.   +|  .++.||.||+|+|...+ .+++.+|+.
T Consensus       188 ~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~---~g--~~i~~D~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        188 RLQHRLTEMGVHLLLKSQLQGLEKTDS--GI-RATLD---SG--RSIEVDAVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             HHHHHHHhCCCEEEECCeEEEEEccCC--EE-EEEEc---CC--cEEECCEEEECcCCCcchHHHHHCCCC
Confidence            344556678999999999999987653  22 24442   33  37999999999998654 566766654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.01  E-value=2.1e-05  Score=76.76  Aligned_cols=36  Identities=11%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....+|||||||.+|+.+|..|.+.+.+|+|||+.+
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~   43 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN   43 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence            455799999999999999999987789999999864

>PLN02568 polyamine oxidase

Probab=97.99  E-value=9.5e-06  Score=81.03  Aligned_cols=39  Identities=26%  Similarity=0.332  Sum_probs=34.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC-----CeEEEEeccCCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG-----LRVGLVEREDFSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G-----~~V~liEk~~~~~  107 (442)
                      ++..||+|||||++||++|++|++.|     ++|+|+|++...+
T Consensus         3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            45689999999999999999999988     8999999987333

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.98  E-value=6.2e-05  Score=72.44  Aligned_cols=33  Identities=15%  Similarity=0.340  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .||||||+|++|+.+|..|.+.  ..+|+||++..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~   37 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            5899999999999999999886  45799999874

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.96  E-value=0.00016  Score=71.71  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|.+|+-+|..|++.|.+|+|||+.+
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~  213 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD  213 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            589999999999999999999999999999864

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.93  E-value=0.00022  Score=69.06  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  177 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAA  177 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            579999999999999999999999999999864

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.92  E-value=1.1e-05  Score=80.03  Aligned_cols=36  Identities=33%  Similarity=0.528  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHC------CCeEEEEeccC-CCC
Q 013476           72 LDILVIGGGATGCGVALDAATR------GLRVGLVERED-FSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~------G~~V~liEk~~-~~~  107 (442)
                      .+|+|||||++||+||++|++.      |.+|+|+|+.+ +++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            3699999999999999999986      37999999997 444

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.91  E-value=1.2e-05  Score=77.24  Aligned_cols=32  Identities=38%  Similarity=0.640  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRG--LRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~  104 (442)
                      .|+|||||++||+|||+|++++  .+|+|+|+++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~   35 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD   35 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4899999999999999999999  9999999985

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.91  E-value=1.5e-05  Score=84.08  Aligned_cols=37  Identities=24%  Similarity=0.371  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      ...+|+|||||++|++||+.|++.|++|+|+|+.+..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            3479999999999999999999999999999998643

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.90  E-value=0.00066  Score=62.98  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             HHcCceEecCeEEEEEEE------cCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCe
Q 013476          243 ALAGAAVLNHAEVISLIK------DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSG  316 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~------~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g  316 (442)
                      +...+++...+++.++..      ++++ -..-+...   +|  ..+.+|.+|-|.|..| -+.+..+++....-+-..+
T Consensus       164 ~~~nv~vi~~~k~~~~~~~~~l~~~~n~-~~~~i~l~---dg--~~~~~~LLigAdg~Ns-~vR~~snid~~~~ny~~ha  236 (481)
T KOG3855|consen  164 ESDNVTVINMAKVIDCTIPEYLIKNDNG-MWFHITLT---DG--INFATDLLIGADGFNS-VVRKASNIDVASWNYDQHA  236 (481)
T ss_pred             hcCceeeecccceeeeccccccCCCCCc-ceEEEEec---cC--ceeeeceeeccccccc-hhhhhcCCCccccccccee
Confidence            446899999999887754      3345 44444443   33  4888999999999888 5777777765444445555


Q ss_pred             eEEEe
Q 013476          317 VHIVL  321 (442)
Q Consensus       317 ~~~~~  321 (442)
                      .+..+
T Consensus       237 vVAtl  241 (481)
T KOG3855|consen  237 VVATL  241 (481)
T ss_pred             eeEEE
Confidence            44433

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.89  E-value=0.00023  Score=70.54  Aligned_cols=56  Identities=20%  Similarity=0.206  Sum_probs=39.9

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+.+.++++|++++++++++++..+++  .+ .+.+.. .+|+...+.+|.||+|+|.-.
T Consensus       218 ~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~~-~~g~~~~i~~D~vi~a~G~~p  273 (466)
T PRK07818        218 EIAKQYKKLGVKILTGTKVESIDDNGS--KV-TVTVSK-KDGKAQELEADKVLQAIGFAP  273 (466)
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEEeCC--eE-EEEEEe-cCCCeEEEEeCEEEECcCccc
Confidence            344556678999999999999987552  33 244432 245445799999999999754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.89  E-value=0.00031  Score=69.57  Aligned_cols=34  Identities=32%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~  207 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD  207 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            3579999999999999999999999999999853

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.88  E-value=1.4e-05  Score=76.36  Aligned_cols=33  Identities=36%  Similarity=0.465  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .||+|||||.+|+.+|+.|+++|++|+|+|+.+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp   33 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP   33 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            489999999999999999999999999999875

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR02053 MerA mercuric reductase

Probab=97.86  E-value=0.00032  Score=69.54  Aligned_cols=33  Identities=39%  Similarity=0.578  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~  199 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD  199 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            589999999999999999999999999999874

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.83  E-value=0.00035  Score=69.07  Aligned_cols=33  Identities=33%  Similarity=0.595  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~  203 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP  203 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            579999999999999999999999999999863

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.83  E-value=0.0003  Score=69.38  Aligned_cols=62  Identities=18%  Similarity=0.064  Sum_probs=43.8

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      ..+.+.+++.|++++++++++++..+  + ++..+...    +  ..+.+|.||+|+|...+ .+++..|+.
T Consensus       195 ~~l~~~l~~~gI~v~~~~~v~~i~~~--~-~~~~v~~~----~--~~i~~d~vi~a~G~~p~~~~l~~~gl~  257 (444)
T PRK09564        195 DVMEEELRENGVELHLNEFVKSLIGE--D-KVEGVVTD----K--GEYEADVVIVATGVKPNTEFLEDTGLK  257 (444)
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEecC--C-cEEEEEeC----C--CEEEcCEEEECcCCCcCHHHHHhcCcc
Confidence            34555667789999999999999643  3 55545432    2  26899999999998653 566665554

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=4.3e-05  Score=68.92  Aligned_cols=59  Identities=19%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .++..+|.+..++..+++..-.++++|+... .+ ...-|++.   +|  -.++++.||++||+.=
T Consensus       266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~-~l~ev~l~---nG--avLkaktvIlstGArW  325 (520)
T COG3634         266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEG-GLIEVELA---NG--AVLKARTVILATGARW  325 (520)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCC-ccEEEEec---CC--ceeccceEEEecCcch
Confidence            4677788888888888888888888888742 23 34445664   33  4789999999999843

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.81  E-value=9.4e-05  Score=77.81  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHC----CCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR----GLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~  104 (442)
                      -+|||||+|++|+.+|..|.++    +++|+||++.+
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~   40 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP   40 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC
Confidence            4899999999999999999764    57999999985

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.81  E-value=0.0003  Score=69.69  Aligned_cols=33  Identities=36%  Similarity=0.472  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  205 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALP  205 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            479999999999999999999999999999864

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.78  E-value=8.2e-05  Score=78.12  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=34.0

Q ss_pred             HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ++++|++++.+++|++|..+..  .|   ++.   +|  ..+.+|.+|+|||...
T Consensus        64 ~~~~gv~~~~g~~V~~Id~~~k--~V---~~~---~g--~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        64 YEKHGITLYTGETVIQIDTDQK--QV---ITD---AG--RTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHCCCEEEcCCeEEEEECCCC--EE---EEC---CC--cEeeCCEEEECCCCCc
Confidence            3568999999999999987652  33   332   33  3789999999999854

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.77  E-value=0.00061  Score=67.66  Aligned_cols=56  Identities=7%  Similarity=0.050  Sum_probs=40.3

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +.+.+++.|++++++++|+++..+++  .+ .+.+.+ .+|+...+.+|.||+|+|...+
T Consensus       230 ~~~~l~~~gi~i~~~~~v~~i~~~~~--~v-~v~~~~-~~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        230 AAKAFTKQGLDIHLGVKIGEIKTGGK--GV-SVAYTD-ADGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHHHHHcCcEEEeCcEEEEEEEcCC--EE-EEEEEe-CCCceeEEEcCEEEEccCCccC
Confidence            34455668999999999999987653  43 244443 3344467999999999997553

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.77  E-value=3.4e-05  Score=79.51  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+...
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r  272 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR  272 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc
Confidence            348999999999999999999999999999999863

>PRK06370 mercuric reductase; Validated

Probab=97.77  E-value=0.00046  Score=68.37  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  204 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP  204 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            589999999999999999999999999999864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.76  E-value=0.00035  Score=69.99  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=40.3

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .|+++++++.++++..++ + ++.+|.+.+..+++...+.+|.||+|+|.-.
T Consensus       401 ~gV~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P  450 (515)
T TIGR03140       401 PNVDILTSAQTTEIVGDG-D-KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP  450 (515)
T ss_pred             CCCEEEECCeeEEEEcCC-C-EEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence            589999999999997765 4 8888888763345556899999999999754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.76  E-value=0.00041  Score=73.11  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      .+.+.++++|+++++++.++++..++++ .+..|.+.   +|+  .+.+|.||+|+|.-.+ .|++..|+.
T Consensus       192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~-~~~~v~~~---dG~--~i~~D~Vv~A~G~rPn~~L~~~~Gl~  256 (847)
T PRK14989        192 QLRRKIESMGVRVHTSKNTLEIVQEGVE-ARKTMRFA---DGS--ELEVDFIVFSTGIRPQDKLATQCGLA  256 (847)
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEecCCC-ceEEEEEC---CCC--EEEcCEEEECCCcccCchHHhhcCcc
Confidence            4555667889999999999999865433 45555553   443  7999999999997543 366666654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.74  E-value=0.0005  Score=67.59  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~  190 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS  190 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            479999999999999999999999999999864

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.74  E-value=4.6e-05  Score=74.74  Aligned_cols=38  Identities=34%  Similarity=0.518  Sum_probs=33.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHH--CCCeEEEEeccCCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAAT--RGLRVGLVEREDFSSG  108 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~--~G~~V~liEk~~~~~g  108 (442)
                      ..+|+|||||++|+.||+.|++  .|++|+|+|+.+..+|
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG   65 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence            3689999999999999999997  7999999999974443

>PRK06116 glutathione reductase; Validated

Probab=97.70  E-value=0.00058  Score=67.42  Aligned_cols=33  Identities=24%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  200 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD  200 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            579999999999999999999999999999864

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.68  E-value=0.0006  Score=71.75  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      .+.+.++++|+++++++.++++..++   ++.+|.+.   +|+  .+.+|.||+|+|.-.+ .|++..|+.
T Consensus       187 ~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~---dG~--~i~~D~Vi~a~G~~Pn~~la~~~gl~  249 (785)
T TIGR02374       187 LLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFK---DGS--SLEADLIVMAAGIRPNDELAVSAGIK  249 (785)
T ss_pred             HHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEEC---CCC--EEEcCEEEECCCCCcCcHHHHhcCCc
Confidence            34455667899999999999987543   66667764   343  7999999999997543 455555554

>PRK10262 thioredoxin reductase; Provisional

Probab=97.67  E-value=0.00077  Score=63.33  Aligned_cols=57  Identities=12%  Similarity=0.067  Sum_probs=41.8

Q ss_pred             HHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECC-CCceEEEEcCEEEEccCCChH
Q 013476          239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL-SGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       239 ~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~-~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .+.+++.|+++++++.++++..++ + ++.+|++.+.. ++....+.+|.||+|+|.-.+
T Consensus       192 ~~~l~~~gV~i~~~~~v~~v~~~~-~-~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~  249 (321)
T PRK10262        192 MDKVENGNIILHTNRTLEEVTGDQ-M-GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  249 (321)
T ss_pred             HhhccCCCeEEEeCCEEEEEEcCC-c-cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence            334456789999999999997665 4 67788876422 133457999999999998654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.66  E-value=0.00081  Score=66.23  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~  199 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE  199 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            589999999999999999999999999999863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.66  E-value=0.00082  Score=66.59  Aligned_cols=34  Identities=32%  Similarity=0.634  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~  208 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD  208 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            3579999999999999999999999999999863

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.65  E-value=0.00093  Score=61.98  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=41.2

Q ss_pred             HHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhh
Q 013476          243 ALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKL  302 (442)
Q Consensus       243 ~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~  302 (442)
                      +++ |+++++++.++++..++   ++.++++.+..+++...+.+|.||+|+|.-.+ .+++.
T Consensus       187 ~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~  245 (300)
T TIGR01292       187 RKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKG  245 (300)
T ss_pred             HhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHH
Confidence            345 89999999999997643   67777776434555678999999999996443 24443

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []

Probab=97.64  E-value=1.9e-05  Score=42.87  Aligned_cols=18  Identities=39%  Similarity=0.372  Sum_probs=14.7

Q ss_pred             CcchhhhhhhHHHHhhhc
Q 013476            1 MSATRIRRFGAVLAAAAG   18 (442)
Q Consensus         1 ~srR~f~~~~~~~~~~aa   18 (442)
                      ||||+|||++++++++++
T Consensus         2 ~sRR~fLk~~~a~~a~~~   19 (26)
T PF10518_consen    2 LSRRQFLKGGAAAAAAAA   19 (26)
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            799999999987766654

Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.64  E-value=0.00072  Score=66.25  Aligned_cols=33  Identities=33%  Similarity=0.597  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|.+|+-+|..|++.|.+|+|+++.+
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  170 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE  170 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            589999999999999999999999999999863

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.63  E-value=0.00087  Score=67.26  Aligned_cols=50  Identities=14%  Similarity=0.257  Sum_probs=41.3

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .|+++++++.++++..++ + ++++|.+++..+++...+.+|.|++|+|.-.
T Consensus       400 ~gI~i~~~~~v~~i~~~~-g-~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p  449 (517)
T PRK15317        400 PNVTIITNAQTTEVTGDG-D-KVTGLTYKDRTTGEEHHLELEGVFVQIGLVP  449 (517)
T ss_pred             CCcEEEECcEEEEEEcCC-C-cEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence            589999999999998765 5 8888888764456656899999999999855

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.61  E-value=8.1e-05  Score=78.08  Aligned_cols=57  Identities=18%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC------C---------CCceEEEEcCEEEEccCCChH
Q 013476          240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~------~---------~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +.+++.|+++++++.+.++..+++| +|++|++...      .         +++...+.||.||+|+|--.+
T Consensus       616 ~~~~~~GV~i~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~  687 (752)
T PRK12778        616 KHAKEEGIEFLTLHNPIEYLADEKG-WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN  687 (752)
T ss_pred             HHHHHcCCEEEecCcceEEEECCCC-EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence            4567789999999999999876667 8998887421      0         233457999999999997654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.61  E-value=0.001  Score=62.63  Aligned_cols=47  Identities=23%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       246 Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      -++++.+++|+++..+++| ++ -+.+++..++....+.+|.||+|||.
T Consensus       293 ~~~l~~~~~v~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGDG-GV-RLTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             -SEEETTEEEEEEEEES-S-SE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred             CeEEeCCCEEEEEEECCCC-EE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence            4899999999999988853 33 25666656677788999999999994

>PRK14727 putative mercuric reductase; Provisional

Probab=97.59  E-value=0.00094  Score=66.36  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            47999999999999999999999999999864

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.0012  Score=62.98  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--C-CeEEEEeccC-CCCCC
Q 013476           72 LDILVIGGGATGCGVALDAATR--G-LRVGLVERED-FSSGT  109 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G-~~V~liEk~~-~~~g~  109 (442)
                      ++|+|||+|..|+++|.+|.+.  . .+|.|+|+.. .+.|.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi   43 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI   43 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence            7899999999999999999985  2 2399999986 55443

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.56  E-value=0.0015  Score=64.70  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -+|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~  207 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD  207 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            589999999999999999999999999999864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.54  E-value=9.8e-05  Score=76.85  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....|+|||+|++|+++|++|++.|++|+|+|+..
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            45789999999999999999999999999999864

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.52  E-value=0.0016  Score=64.15  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  199 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE  199 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            479999999999999999999999999999863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=97.50  E-value=0.0018  Score=64.56  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -+|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~  236 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE  236 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence            589999999999999999999999999999863

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.50  E-value=0.0019  Score=64.12  Aligned_cols=32  Identities=28%  Similarity=0.207  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            46999999999999999999999999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.50  E-value=0.0017  Score=64.48  Aligned_cols=32  Identities=31%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            57999999999999999999999999999864

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.49  E-value=0.00012  Score=67.97  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCe--EEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLR--VGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~--V~liEk~~  104 (442)
                      ...+|+|||||++||++||+|++++.+  |+|+|+.+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~   46 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP   46 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence            447999999999999999999999876  56699986

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.48  E-value=4.7e-05  Score=63.77  Aligned_cols=36  Identities=25%  Similarity=0.471  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      -.+.||||||+|.+||++||..+++  .++|.|||..-
T Consensus        74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV  111 (328)
T ss_pred             hhccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence            3467999999999999999999965  68999999985

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.48  E-value=0.00016  Score=74.38  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...+|+|||+|++|+++|+.|++.|++|+|+|+...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ  227 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            346999999999999999999999999999999863

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.47  E-value=0.0018  Score=63.79  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~  191 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAAS  191 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            489999999999999999999999999999864

>PTZ00058 glutathione reductase; Provisional

Probab=97.46  E-value=0.0018  Score=65.15  Aligned_cols=34  Identities=15%  Similarity=0.126  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~  270 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN  270 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence            3579999999999999999999999999999863

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.44  E-value=0.0025  Score=63.07  Aligned_cols=33  Identities=33%  Similarity=0.549  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.++|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~  210 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD  210 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            479999999999999999999999999999853

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.44  E-value=0.0002  Score=67.69  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC-CCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERED-FSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~-~~~  107 (442)
                      ..+.|||||||++||+||.+|-++|. .|+|+|..+ +++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            44789999999999999999998876 699999986 544

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.43  E-value=0.002  Score=63.97  Aligned_cols=54  Identities=15%  Similarity=0.114  Sum_probs=39.2

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.++++|+++++++.++++..++++  ...|++.   ++  ..+.+|.||+|+|.-.
T Consensus       235 ~~l~~~L~~~GI~i~~~~~v~~i~~~~~~--~~~v~~~---~g--~~i~~D~vl~a~G~~P  288 (486)
T TIGR01423       235 KELTKQLRANGINIMTNENPAKVTLNADG--SKHVTFE---SG--KTLDVDVVMMAIGRVP  288 (486)
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEEcCCc--eEEEEEc---CC--CEEEcCEEEEeeCCCc
Confidence            34555667789999999999999876543  3334442   33  3799999999999754

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN03000 amine oxidase

Probab=97.42  E-value=0.0002  Score=74.17  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=34.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      ...||+|||||++|+.+|+.|++.|++|+|+|+.. +++
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG  221 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence            45899999999999999999999999999999986 443

>PRK13748 putative mercuric reductase; Provisional

Probab=97.41  E-value=0.0019  Score=65.65  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+||++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            57999999999999999999999999999874

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.39  E-value=0.0036  Score=64.07  Aligned_cols=33  Identities=18%  Similarity=0.041  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~  345 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP  345 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            479999999999999999999999999999864

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.38  E-value=0.0018  Score=61.52  Aligned_cols=55  Identities=16%  Similarity=0.041  Sum_probs=45.4

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +.+....+++|++++.++.+.++..+.+| +++-|.+.+   +  .++.||.||+++|.-.
T Consensus       259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~~G-ev~~V~l~d---g--~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  259 QFYEDYYENKGVKFYLGTVVSSLEGNSDG-EVSEVKLKD---G--KTLEADLVVVGIGIKP  313 (478)
T ss_pred             HHHHHHHHhcCeEEEEecceeecccCCCC-cEEEEEecc---C--CEeccCeEEEeecccc
Confidence            34555667899999999999999988878 998888853   4  4899999999999844

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.37  E-value=0.00029  Score=68.34  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=32.4

Q ss_pred             CCcEEEECCChHHHHHHHHHH-HCCCeEEEEeccCCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAA-TRGLRVGLVEREDFSSG  108 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La-~~G~~V~liEk~~~~~g  108 (442)
                      ...|+|||||++|+.||.+|+ +.|++|+|+||.+..+|
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG   77 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            367999999999999999765 67999999999975443

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.37  E-value=0.002  Score=67.72  Aligned_cols=33  Identities=33%  Similarity=0.451  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR-VGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~  104 (442)
                      -.|||||+|..|+-+|..|.+.|.+ |+|+++..
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4799999999999999999999997 99999863

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.36  E-value=0.0024  Score=63.24  Aligned_cols=33  Identities=33%  Similarity=0.570  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~  202 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD  202 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            589999999999999999999999999999864

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.32  E-value=0.004  Score=62.14  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            47999999999999999999999999999863

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.32  E-value=0.0023  Score=62.25  Aligned_cols=34  Identities=44%  Similarity=0.712  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..+|||||+|.+|+.+|..|+++|++|+|+|+.+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~  169 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD  169 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence            4799999999999999999999999999999975

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.31  E-value=0.00038  Score=66.31  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      ..+|+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            368999999999999999999999999999998643

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.31  E-value=0.0032  Score=61.60  Aligned_cols=59  Identities=12%  Similarity=0.061  Sum_probs=42.0

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ..+.+.++++|++++++++++++..+    .   |+++   +|+  ++.+|.||+|+|.-.+.+.+.+++.
T Consensus       232 ~~~~~~L~~~gV~v~~~~~v~~v~~~----~---v~~~---~g~--~i~~d~vi~~~G~~~~~~~~~~~l~  290 (424)
T PTZ00318        232 KYGQRRLRRLGVDIRTKTAVKEVLDK----E---VVLK---DGE--VIPTGLVVWSTGVGPGPLTKQLKVD  290 (424)
T ss_pred             HHHHHHHHHCCCEEEeCCeEEEEeCC----E---EEEC---CCC--EEEccEEEEccCCCCcchhhhcCCc
Confidence            34455667799999999999988532    3   3443   343  7899999999997666666655543

>PRK07846 mycothione reductase; Reviewed

Probab=97.29  E-value=0.0034  Score=61.87  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~  199 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG  199 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            3589999999999999999999999999999864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.28  E-value=0.0004  Score=68.96  Aligned_cols=34  Identities=32%  Similarity=0.469  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..+|+|||+|++|+++|..|++.|++|+|+|+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            3699999999999999999999999999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.28  E-value=0.0037  Score=61.42  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  181 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD  181 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            579999999999999999999999999999863

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=97.27  E-value=0.00018  Score=68.88  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .+|.+|||+|.+|+.+|..|++.|++|.++-|-.+
T Consensus        55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p   89 (642)
T KOG2403|consen   55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFP   89 (642)
T ss_pred             eceeEEEeccchhhhhhhhhhhcCceEEEEecccc
Confidence            39999999999999999999999999999988743

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.25  E-value=0.0034  Score=59.81  Aligned_cols=32  Identities=34%  Similarity=0.473  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR-VGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~  103 (442)
                      -.|+|||+|..|+-+|..|++.|.+ |+|+++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            4699999999999999999999997 9999874

>PLN02976 amine oxidase

Probab=97.25  E-value=0.0004  Score=74.80  Aligned_cols=36  Identities=25%  Similarity=0.438  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...||+|||+|++|+++|+.|++.|++|+|||+...
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~  727 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSR  727 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccC
Confidence            348999999999999999999999999999999863

>PLN02546 glutathione reductase

Probab=97.18  E-value=0.0068  Score=61.08  Aligned_cols=34  Identities=24%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-+|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~  285 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK  285 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence            3589999999999999999999999999999853

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.12  E-value=0.007  Score=64.74  Aligned_cols=32  Identities=38%  Similarity=0.502  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -+|||||||..|+-+|..|.+.|.+|+++.+.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr  479 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR  479 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence            47999999999999999999999999999875

>PRK13984 putative oxidoreductase; Provisional

Probab=97.09  E-value=0.00078  Score=69.07  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      ...+|+|||+|++|+++|..|++.|++|+|+|+.+..+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45789999999999999999999999999999987443

>TIGR03452 mycothione_red mycothione reductase

Probab=97.04  E-value=0.011  Score=58.38  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.++|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~  202 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST  202 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            589999999999999999999999999999853

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.97  E-value=0.00079  Score=65.50  Aligned_cols=34  Identities=32%  Similarity=0.461  Sum_probs=32.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      -.|.|||||++||++|..|+++|++|+++|+.+.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~  157 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL  157 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence            6899999999999999999999999999999863

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.97  E-value=0.015  Score=63.10  Aligned_cols=61  Identities=16%  Similarity=0.062  Sum_probs=45.0

Q ss_pred             HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      ++++|+++++++.++++..+  + ++.+|++.. .+++...+.||.|+++.|.-.+ .|...+|..
T Consensus       361 L~~~GV~i~~~~~v~~i~g~--~-~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~  422 (985)
T TIGR01372       361 ARELGIEVLTGHVVAATEGG--K-RVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHLFSQRGGK  422 (985)
T ss_pred             HHHcCCEEEcCCeEEEEecC--C-cEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence            45678999999999988654  3 778888763 2345568999999999997543 566666643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.84  E-value=0.018  Score=58.39  Aligned_cols=33  Identities=30%  Similarity=0.481  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            479999999999999999999999999999853

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.68  E-value=0.0027  Score=58.38  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGT  109 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~  109 (442)
                      ...|+|||+|++|+.+|.+|.++  +++|.|+||.+...|-
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL   60 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL   60 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce
Confidence            45899999999999999999884  7899999999855443

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.66  E-value=0.002  Score=58.04  Aligned_cols=34  Identities=38%  Similarity=0.441  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..-|-|||||.+|.-+||.+|++|..|.|.|-.+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence            4569999999999999999999999999999886

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.43  E-value=0.063  Score=51.38  Aligned_cols=57  Identities=16%  Similarity=-0.017  Sum_probs=39.7

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      .+.+.++++|++++.++++.++..   + .   |.+.   +|  .++.+|.||+|+|...+.++...++
T Consensus       196 ~~~~~l~~~gV~v~~~~~v~~i~~---~-~---v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~gl  252 (364)
T TIGR03169       196 LVLRLLARRGIEVHEGAPVTRGPD---G-A---LILA---DG--RTLPADAILWATGARAPPWLAESGL  252 (364)
T ss_pred             HHHHHHHHCCCEEEeCCeeEEEcC---C-e---EEeC---CC--CEEecCEEEEccCCChhhHHHHcCC
Confidence            344556678999999999988742   2 2   3442   33  3789999999999876665554443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.046  Score=50.95  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      .++.+.+.+.+.=.|+++..|.++..+....+| ++.||..     +. ....+| -|+|...|.++-.+..|
T Consensus       232 gEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~g-k~igvk~-----~~-~v~~~k-~vi~dpSY~~~~~k~vg  296 (440)
T KOG1439|consen  232 GELPQGFARLSAVYGGTYMLNKPIDEINETKNG-KVIGVKS-----GG-EVAKCK-KVICDPSYFPQKVKKVG  296 (440)
T ss_pred             chhhHHHHHHhhccCceeecCCceeeeeccCCc-cEEEEec-----CC-ceeecc-eEEecCccchHHHHhhh
Confidence            467788888777789999999999999996557 8877754     22 355667 67788888876666554

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.36  E-value=0.046  Score=56.50  Aligned_cols=32  Identities=34%  Similarity=0.478  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      -.|||||+|..|+-+|..|.+.|. +|+|+++.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~  356 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRR  356 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            579999999999999999999997 59999875

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.28  E-value=0.026  Score=52.86  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~  104 (442)
                      +..+|++.||-|+.-|+.|+.|.+.+ .+++.+||.+
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp   39 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP   39 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence            45699999999999999999999975 7899999985

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.27  E-value=0.0056  Score=50.74  Aligned_cols=30  Identities=40%  Similarity=0.474  Sum_probs=28.7

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |.|||||..|.++|..|+++|++|.|+.+.
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~   31 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRD   31 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence            899999999999999999999999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.23  E-value=0.0095  Score=54.81  Aligned_cols=38  Identities=21%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHC----CCeEEEEeccCCCCCC
Q 013476           72 LDILVIGGGATGCGVALDAATR----GLRVGLVEREDFSSGT  109 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~~~~g~  109 (442)
                      -.+-|||+|++||++|..|-|.    |.++.|+|.-+..+|+
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS   64 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS   64 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence            5688999999999999999875    7899999998765544

>TIGR02811 formate_TAT formate dehydrogenase region TAT target

Probab=96.21  E-value=0.0021  Score=43.87  Aligned_cols=16  Identities=31%  Similarity=-0.016  Sum_probs=12.1

Q ss_pred             CcchhhhhhhHHHHhh
Q 013476            1 MSATRIRRFGAVLAAA   16 (442)
Q Consensus         1 ~srR~f~~~~~~~~~~   16 (442)
                      +|||+|||+.++++++
T Consensus         9 ~sRR~Flk~lg~~aaa   24 (66)
T TIGR02811         9 PSRRDLLKGLGVGAAA   24 (66)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            4899999987765543

Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.18  E-value=0.0079  Score=51.03  Aligned_cols=31  Identities=39%  Similarity=0.567  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      |.|||+|..|...|..++..|++|+|+|...
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            8999999999999999999999999999863

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.10  E-value=0.0074  Score=51.42  Aligned_cols=32  Identities=34%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||.|..|+.+|..||+.|++|+.+|...
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            48999999999999999999999999999873

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.05  E-value=0.01  Score=48.88  Aligned_cols=30  Identities=47%  Similarity=0.584  Sum_probs=28.6

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |+|||+|..|+..|+.|++.|.+|.++.+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            789999999999999999999999999885

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.95  E-value=0.087  Score=52.45  Aligned_cols=33  Identities=30%  Similarity=0.406  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..+.+.|. +|+++|..+
T Consensus       284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~  317 (485)
T TIGR01317       284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP  317 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            479999999999999988888875 699998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.83  E-value=0.064  Score=54.09  Aligned_cols=63  Identities=25%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh-HHHhhhhCCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQNV  307 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s-~~l~~~~g~~~  307 (442)
                      .|.+.+++.|++++++...+.+..+  + ++.+|...   +|.  .+.|+.||.|+|.-- ..|.+..|+.+
T Consensus       192 lL~~~le~~Gi~~~l~~~t~ei~g~--~-~~~~vr~~---DG~--~i~ad~VV~a~GIrPn~ela~~aGlav  255 (793)
T COG1251         192 LLRRKLEDLGIKVLLEKNTEEIVGE--D-KVEGVRFA---DGT--EIPADLVVMAVGIRPNDELAKEAGLAV  255 (793)
T ss_pred             HHHHHHHhhcceeecccchhhhhcC--c-ceeeEeec---CCC--cccceeEEEecccccccHhHHhcCcCc
Confidence            4556667889999998888877763  3 78888875   343  789999999999743 26777777654

>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence

Probab=95.82  E-value=0.0052  Score=34.43  Aligned_cols=18  Identities=33%  Similarity=0.303  Sum_probs=13.6

Q ss_pred             CcchhhhhhhHHHHhhhc
Q 013476            1 MSATRIRRFGAVLAAAAG   18 (442)
Q Consensus         1 ~srR~f~~~~~~~~~~aa   18 (442)
                      +|||+|||..++++++++
T Consensus         1 ~sRR~Flk~~~~~~a~~~   18 (29)
T TIGR01409         1 LSRRDFLKGAAAAGAAAG   18 (29)
T ss_pred             CchhhhHHHHHHHHHHHh
Confidence            689999999876555443

Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.80  E-value=0.012  Score=61.37  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -..|.|||+|++||+||-.|-+.|+.|+|+||.+
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence            3689999999999999999999999999999986

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.79  E-value=0.079  Score=56.00  Aligned_cols=54  Identities=17%  Similarity=0.166  Sum_probs=42.8

Q ss_pred             HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECC------C------C-------------ceEEEEcCEEEEccCC
Q 013476          240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL------S------G-------------KEFDTYAKVVVNAAGP  294 (442)
Q Consensus       240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~------~------g-------------~~~~i~a~~VVlAtG~  294 (442)
                      +.|.+.|++|.+++.-.+++.+++| +|++++++.+.      .      +             ....+.||.||+|.|-
T Consensus       648 ~~A~eEGV~f~~~~~P~~i~~d~~g-~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~  726 (1028)
T PRK06567        648 IYALALGVDFKENMQPLRINVDKYG-HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI  726 (1028)
T ss_pred             HHHHHcCcEEEecCCcEEEEecCCC-eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence            4566789999999999999887667 99999887432      1      1             3467999999999994

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.71  E-value=0.12  Score=51.19  Aligned_cols=51  Identities=10%  Similarity=0.130  Sum_probs=38.4

Q ss_pred             cCceEecCeEEEEEEEc--CCCCeEEEEEEEEC--------------CCCceEEEEcCEEEEccCCCh
Q 013476          245 AGAAVLNHAEVISLIKD--EASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~--~~g~~v~gV~~~~~--------------~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+++|+|...-++|..+  ++| +|.++++..+              .+|+...+.||.||.|-|.-+
T Consensus       288 ~~v~~~f~~sP~ei~~~~~~~~-~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~  354 (491)
T PLN02852        288 RELHFVFFRNPTRFLDSGDGNG-HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS  354 (491)
T ss_pred             ceEEEEccCCCeEEEccCCCCC-cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence            57899888888888742  336 8999988632              145566799999999999764

>PRK13984 putative oxidoreductase; Provisional

Probab=95.54  E-value=0.2  Score=51.61  Aligned_cols=51  Identities=14%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             HcCceEecCeEEEEEEEcCCCCeEEEEEEEEC-----C---------CCceEEEEcCEEEEccCCCh
Q 013476          244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNN-----L---------SGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~-----~---------~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +.|+++++++.+.++..++ + +|++|++...     .         ++....+.+|.||+|.|--.
T Consensus       474 ~~GV~i~~~~~~~~i~~~~-g-~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p  538 (604)
T PRK13984        474 EEGVVIYPGWGPMEVVIEN-D-KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP  538 (604)
T ss_pred             HcCCEEEeCCCCEEEEccC-C-EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence            4678888777777775543 5 7777765320     0         22345799999999999754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.37  E-value=0.021  Score=50.42  Aligned_cols=32  Identities=34%  Similarity=0.665  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +++|||+|-.|.+.|..|+++|+.|++||+.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            58999999999999999999999999999974

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.28  E-value=0.023  Score=52.96  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            69999999999999999999999999999864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.025  Score=56.32  Aligned_cols=33  Identities=33%  Similarity=0.459  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999753

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=95.13  E-value=0.33  Score=52.15  Aligned_cols=34  Identities=32%  Similarity=0.489  Sum_probs=29.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC-CC-eEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATR-GL-RVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~-G~-~V~liEk~~  104 (442)
                      .-.|||||+|..|+-+|..+.+. |. +|+|+++..
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            35799999999999999999886 86 799998863

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=95.12  E-value=0.25  Score=52.84  Aligned_cols=33  Identities=33%  Similarity=0.474  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHC-C-CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR-G-LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~-G-~~V~liEk~~  104 (442)
                      -.|||||||..|+-+|..+.+. | .+|+|+.+..
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            4799999999999999999887 5 3899998863

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.05  E-value=0.028  Score=55.69  Aligned_cols=32  Identities=31%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|||.|.+|+++|..|+++|++|++.|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            48999999999999999999999999999874

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.01  E-value=0.024  Score=55.36  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+...+...|.+|+++++|++|..+++  +|+ |..   .+|+  .+.||.||+|+....
T Consensus       214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~--~v~-v~~---~~g~--~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  214 ALALAAEELGGEIRLNTPVTRIEREDG--GVT-VTT---EDGE--TIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHHHHHGGGEESSEEEEEEEEESS--EEE-EEE---TTSS--EEEESEEEE-S-HHH
T ss_pred             HHHHHHhhcCceeecCCcceecccccc--ccc-ccc---ccce--EEecceeeecCchhh
Confidence            334444556889999999999999884  664 333   3444  899999999999744

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=94.87  E-value=0.28  Score=46.43  Aligned_cols=63  Identities=14%  Similarity=-0.052  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      +.....+...+.|+++..++.|.++..+.       +.++. ++|+...|..-.+|-+||.....+.+.|.
T Consensus       275 l~~yae~~f~~~~I~~~~~t~Vk~V~~~~-------I~~~~-~~g~~~~iPYG~lVWatG~~~rp~~k~lm  337 (491)
T KOG2495|consen  275 LVEYAENQFVRDGIDLDTGTMVKKVTEKT-------IHAKT-KDGEIEEIPYGLLVWATGNGPRPVIKDLM  337 (491)
T ss_pred             HHHHHHHHhhhccceeecccEEEeecCcE-------EEEEc-CCCceeeecceEEEecCCCCCchhhhhHh
Confidence            34444555667799999999998875432       35554 46777788999999999998776666553

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.83  E-value=0.048  Score=50.92  Aligned_cols=34  Identities=32%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|..|...|..|++.|++|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3469999999999999999999999999998863

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.78  E-value=0.04  Score=51.25  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..++..|++|+++|..+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            359999999999999999999999999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.76  E-value=0.043  Score=50.53  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|+++|.+|+++|..
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence            35999999999999999999999999999986

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.72  E-value=0.054  Score=46.77  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ...|+|||+|..|...|..|++.|. +++|+|...
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            5789999999999999999999999 699999874

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.70  E-value=0.04  Score=54.62  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            589999999999999999999999999999975

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.69  E-value=0.046  Score=50.25  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..++..|++|+++|..+
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.64  E-value=0.05  Score=50.55  Aligned_cols=32  Identities=31%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|..|...|..|++.|.+|+++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            46999999999999999999999999999985

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.62  E-value=0.046  Score=50.37  Aligned_cols=32  Identities=31%  Similarity=0.595  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..|+++|++|+++|+.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999863

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.60  E-value=0.054  Score=46.94  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||||.+|..-+..|.+.|++|+|++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.063  Score=49.54  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=34.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      .|||+|+|.|+.=+..+..|+..|.+|+.||+++.-+
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence            6999999999999999999999999999999998433

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=0.043  Score=51.19  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=38.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTK  115 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g  115 (442)
                      ..++||||||.|.-=...|.+.++.|.+|+=+|.++ .++.-++.+..
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            456999999999999999999999999999999997 45544444433

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.53  E-value=0.067  Score=44.86  Aligned_cols=32  Identities=28%  Similarity=0.365  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|+|+|.+|..||..|...|++|+++|..
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            67999999999999999999999999999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.46  E-value=0.049  Score=50.96  Aligned_cols=32  Identities=31%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||.|.+||++|.-||+.|+.|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            48999999999999999999999999999874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.38  E-value=0.086  Score=42.37  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~  103 (442)
                      ....|+|||+|-+|-.++++|++.|.+ |+|+.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            457899999999999999999999997 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.32  E-value=0.049  Score=47.18  Aligned_cols=34  Identities=32%  Similarity=0.520  Sum_probs=29.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|.++.-+|+.|++.|.+|+++-|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            4789999999999999999999999999998865

...

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.84  Score=42.26  Aligned_cols=54  Identities=22%  Similarity=0.246  Sum_probs=40.1

Q ss_pred             CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhC
Q 013476          246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLAD  304 (442)
Q Consensus       246 Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g  304 (442)
                      ++++++++++.+|.-++    |.+|++++.. +....+..+.|.++.|.-.+ .+++.++
T Consensus       193 ~i~~~~~~~i~ei~G~~----v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~~~~~~  247 (305)
T COG0492         193 KIEVLTNTVVKEILGDD----VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTELLKGLG  247 (305)
T ss_pred             CeEEEeCCceeEEecCc----cceEEEEecC-CceEEEEeceEEEecCCCCchHHHhhcc
Confidence            68999999999887543    5678887633 56678999999999998543 5555443

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=94.32  E-value=0.06  Score=52.57  Aligned_cols=33  Identities=36%  Similarity=0.540  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.++|||||..|+-.|..+++.|.+|+|||+.+
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~  206 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGD  206 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            569999999999999999999999999999985

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.32  E-value=0.071  Score=49.25  Aligned_cols=32  Identities=34%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|+++|++|+++|+.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999999999986

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.28  E-value=0.076  Score=43.88  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVER  102 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk  102 (442)
                      ...|+|||||-.|..-|..|.+.|++|+||..
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            46799999999999999999999999999954

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.23  E-value=0.035  Score=48.70  Aligned_cols=31  Identities=26%  Similarity=0.451  Sum_probs=27.1

Q ss_pred             EEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .+||||||+|.+||-.|+..  ..+|+||-..+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            68999999999999999975  67899997764

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.18  E-value=0.077  Score=45.91  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|||||-.|...|..|.+.|++|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            467999999999999999999999999999763

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.17  E-value=0.074  Score=52.52  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4679999999999999999999999999999863

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.11  E-value=0.073  Score=49.16  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..|++.|++|+++|+.+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            59999999999999999999999999999863

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.11  E-value=0.045  Score=41.62  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +...|+|||+|..|..-+..|.+.|++|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3467999999999999999999999999999875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.07  E-value=0.098  Score=43.67  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCCh-HHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGGA-TGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~-aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -....|+|||+|- +|..+|..|.++|.+|.++.+.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            3558899999995 6999999999999999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.49  Score=43.55  Aligned_cols=48  Identities=19%  Similarity=0.317  Sum_probs=38.7

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      .+++|+.|..-+.+.-+++  +|+|+..+++.+|+...+.=..|.+--|.
T Consensus       403 ~Nv~ii~na~Ttei~Gdg~--kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL  450 (520)
T COG3634         403 PNVTIITNAQTTEVKGDGD--KVTGLEYRDRVSGEEHHLELEGVFVQIGL  450 (520)
T ss_pred             CCcEEEecceeeEEecCCc--eecceEEEeccCCceeEEEeeeeEEEEec
Confidence            3688999988888887765  99999999877787777777888777775

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.98  E-value=0.071  Score=49.59  Aligned_cols=30  Identities=30%  Similarity=0.384  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVER  102 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk  102 (442)
                      .|+|||+|..|...|..|++.|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            489999999999999999999999999988

>PRK04148 hypothetical protein; Provisional

Probab=93.85  E-value=0.065  Score=42.50  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.+++||.| .|...|..|++.|.+|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            469999999 99989999999999999999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.81  E-value=0.086  Score=49.00  Aligned_cols=31  Identities=35%  Similarity=0.472  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|+|||+|..|...|..|++.|.+|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4899999999999999999999999999984

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.78  E-value=0.11  Score=46.89  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRG-LRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~~  105 (442)
                      ....|+|||+|..|..+|..|++.| .+++|+|...+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            4588999999999999999999999 47999998764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.77  E-value=0.1  Score=48.01  Aligned_cols=32  Identities=41%  Similarity=0.560  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..|++.|++|+++|..+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            59999999999999999999999999999863

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.77  E-value=0.085  Score=51.26  Aligned_cols=33  Identities=33%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||.|..|+..|..|+++|++|+++|..+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            459999999999999999999999999999864

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.69  E-value=0.089  Score=51.88  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|||||+|..|+-+|..|++.|.+|+|+++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            479999999999999999999999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.66  E-value=0.099  Score=49.53  Aligned_cols=31  Identities=35%  Similarity=0.580  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|...|..|++.|++|+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            5999999999999999999999999999985

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.66  E-value=0.064  Score=48.32  Aligned_cols=33  Identities=30%  Similarity=0.533  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..+|+|||+|.+|.-+|.-+.-.|.+|+++|.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            478999999999999999999999999999986

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.62  E-value=0.11  Score=49.59  Aligned_cols=33  Identities=33%  Similarity=0.533  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++|+.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            467999999999999999999999999999985

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.47  E-value=0.13  Score=48.44  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ....|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V   59 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV   59 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            35789999999999999999999999 8999999753

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.39  E-value=0.11  Score=48.07  Aligned_cols=31  Identities=32%  Similarity=0.443  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      .|.|||+|..|...|+.|+..|. +|+++|..
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~   34 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV   34 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999999887 89999985

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12831 putative oxidoreductase; Provisional

Probab=93.35  E-value=0.11  Score=51.51  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|||+|..|+-+|..|.+.|.+|+|+++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            48999999999999999999999999999875

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.29  E-value=0.12  Score=47.97  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRG--LRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~  104 (442)
                      .|.|||+|.+|.++|+.|++.|  ..|+|+|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            4899999999999999999999  4799999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.28  E-value=0.11  Score=41.66  Aligned_cols=34  Identities=32%  Similarity=0.594  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ..|+|||+|..|...|..|++.|. +++|+|...+
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            579999999999999999999998 6999999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.16  E-value=0.19  Score=39.05  Aligned_cols=31  Identities=26%  Similarity=0.517  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      |+|||.|-.|...+..|.+.+.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7999999999999999999888999999974

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.08  E-value=0.15  Score=47.90  Aligned_cols=36  Identities=22%  Similarity=0.483  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ....|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v   59 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV   59 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            35789999999999999999999998 7999999854

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.98  E-value=0.16  Score=43.82  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|+|.|-.|..+|..|.+.|++|+++|..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            56999999999999999999999999998864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.95  E-value=0.14  Score=48.12  Aligned_cols=31  Identities=26%  Similarity=0.550  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|+++|.+|.++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4899999999999999999999999999985

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=92.95  E-value=0.15  Score=47.20  Aligned_cols=32  Identities=34%  Similarity=0.578  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..|+..|++|+++|+..
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            49999999999999999999999999999863

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=92.93  E-value=0.13  Score=50.11  Aligned_cols=32  Identities=34%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||.|..|+..|..|++.|++|+++|+..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            48999999999999999999999999999874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.91  E-value=0.15  Score=47.56  Aligned_cols=32  Identities=34%  Similarity=0.596  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|.+.|..|++.|++|+++|..
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            35999999999999999999999999999975

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.76  E-value=0.2  Score=46.68  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|+++|++|.++++..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999999999999999999999864

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.74  E-value=0.19  Score=42.39  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLR-VGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~  104 (442)
                      .|+|||+|..|...|..|++.|.. ++|+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            389999999999999999999995 99999975

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=92.74  E-value=0.11  Score=46.93  Aligned_cols=36  Identities=36%  Similarity=0.692  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR-GL-RVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~-G~-~V~liEk~~  104 (442)
                      .+++.|+|||||.+|++.|..+.+. |. +|.|||..+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            5679999999999999999999885 43 799999863

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.71  E-value=0.15  Score=50.67  Aligned_cols=33  Identities=39%  Similarity=0.561  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..|++.|++|+|+|+..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            459999999999999999999999999999874

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=92.68  E-value=0.14  Score=43.86  Aligned_cols=35  Identities=37%  Similarity=0.612  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....|.|||+|..|.-.|...+..|+.|.|+|+..
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~   44 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE   44 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence            34689999999999999999999999999999974

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=92.65  E-value=0.19  Score=43.70  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=33.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS  106 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~~  106 (442)
                      +..|+|||.|-+|..++-.|+|.|. +.+|||...+.
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~   66 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVC   66 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccc
Confidence            5889999999999999999999998 79999998754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.57  E-value=0.23  Score=43.06  Aligned_cols=37  Identities=27%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      -.+..|+|||.|..|..+|..|++.|. +++|+|...+
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            345889999999999999999999997 7999998753

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.55  E-value=0.18  Score=48.52  Aligned_cols=34  Identities=29%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|+|+|..|+.+|..|...|.+|+++|..+
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3479999999999999999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.49  E-value=0.18  Score=47.83  Aligned_cols=32  Identities=41%  Similarity=0.601  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-CeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRG-LRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~  103 (442)
                      -+|+|||+|-.|.++|..||++| .+|+|.+|.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            47999999999999999999999 899999997

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.47  E-value=0.18  Score=49.85  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|+|+|.+|+.++..+...|++|+++|..+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999863

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.46  E-value=0.17  Score=40.58  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|+|+|..+.+.+..++..|++|+|+|..+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            5899999999999999999999999999874

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.39  E-value=0.19  Score=47.27  Aligned_cols=31  Identities=39%  Similarity=0.586  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|...|..|++.|++|+++++.
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~   36 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR   36 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5999999999999999999999999999985

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.28  E-value=0.17  Score=52.85  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|+.++..|++|+|+|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.28  E-value=0.25  Score=44.05  Aligned_cols=35  Identities=23%  Similarity=0.508  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            4789999999999999999999997 6999998754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.24  E-value=0.19  Score=50.13  Aligned_cols=33  Identities=39%  Similarity=0.517  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|.|||+|..|...|..|+++|+.|+|+|+..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            359999999999999999999999999999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=92.12  E-value=0.27  Score=42.93  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~~  105 (442)
                      ....|+|||+|..|..+|..|++.|.. ++|+|...+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   63 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV   63 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence            357899999999999999999999985 999998753

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.11  E-value=0.22  Score=45.70  Aligned_cols=33  Identities=24%  Similarity=0.454  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3579999999999999999999998 69999885

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.09  E-value=0.27  Score=39.88  Aligned_cols=33  Identities=27%  Similarity=0.613  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           73 DILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      .|+|||+|..|...|..|++.|. +++|+|...+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            38999999999999999999998 6999998754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=92.07  E-value=0.22  Score=46.77  Aligned_cols=31  Identities=35%  Similarity=0.520  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|...|..|++.|++|.++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            5999999999999999999999999999986

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.04  E-value=0.2  Score=46.42  Aligned_cols=31  Identities=32%  Similarity=0.426  Sum_probs=28.3

Q ss_pred             EEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      |.|||+|.+|...|+.|+..|+ +|+|+|..+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5899999999999999999887 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.03  E-value=0.24  Score=43.66  Aligned_cols=33  Identities=24%  Similarity=0.455  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe---EEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR---VGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~---V~liEk~~  104 (442)
                      ..|+|+|+|-+|..+|..|.+.|.+   |.|+++..
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            5799999999999999999999985   99999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.03  E-value=0.19  Score=52.39  Aligned_cols=32  Identities=25%  Similarity=0.523  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|+.++..|+.|+|+|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.02  E-value=0.2  Score=48.14  Aligned_cols=31  Identities=23%  Similarity=0.176  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||.|.+|+..|..++. |++|+++|...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            38999999999999988885 99999999874

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=91.94  E-value=0.2  Score=46.02  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||||..|...|+.+|..|++|+++|..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46899999999999999999988999999997

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=91.85  E-value=0.24  Score=48.79  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .|.|||.|.+|+.+|..||+.  |++|+.+|...
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            599999999999999999998  47899999763

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=91.65  E-value=0.48  Score=34.53  Aligned_cols=32  Identities=34%  Similarity=0.534  Sum_probs=29.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC-CCeEEEEec
Q 013476           71 PLDILVIGGGATGCGVALDAATR-GLRVGLVER  102 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk  102 (442)
                      ...++|+|+|.+|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35799999999999999999998 678999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.55  E-value=0.31  Score=43.29  Aligned_cols=37  Identities=27%  Similarity=0.497  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC-----------CeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG-----------LRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G-----------~~V~liEk~~~  105 (442)
                      +....|+|||+|..|...+..|++.|           .+++|+|...+
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            35589999999999999999999974           38999998753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK08328 hypothetical protein; Provisional

Probab=91.55  E-value=0.33  Score=43.01  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4789999999999999999999998 5999988753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.53  E-value=0.26  Score=48.76  Aligned_cols=33  Identities=36%  Similarity=0.466  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      .-.|+|||+|..|+-+|..|++.|. +|+|+++.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            3579999999999999999999998 89999885

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=91.41  E-value=0.34  Score=40.31  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=27.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|-|||-|..|...|..|+++|++|.++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~   33 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS   33 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence            36899999999999999999999999999986

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=91.40  E-value=0.34  Score=43.36  Aligned_cols=36  Identities=28%  Similarity=0.523  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      .+..|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            35799999999999999999999997 6999998753

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=91.36  E-value=0.29  Score=48.83  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..|+++|++|+|+|+.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999863

>PRK08223 hypothetical protein; Validated

Probab=91.36  E-value=0.36  Score=43.85  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      .+..|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            35899999999999999999999998 6999998754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=91.35  E-value=0.35  Score=45.16  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..|+|||+|.+|...|+.++..|+ +|+|+|..+
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~   40 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK   40 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            579999999999999999999996 899999864

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.28  E-value=0.24  Score=51.79  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|+.++..|++|+|+|..+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            359999999999999999999999999999874

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=91.26  E-value=0.45  Score=46.33  Aligned_cols=55  Identities=20%  Similarity=0.018  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          235 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       235 ~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ...|.+.+++.|++|+++++|++|..+++  +++.+ +.  .+|  ..+.||.||+|+....
T Consensus       200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~--~~~~~-~~--~~g--~~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       200 PEPARRWLDSRGGEVRLGTRVRSIEANAG--GIRAL-VL--SGG--ETLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHHHHHHcCCEEEcCCeeeEEEEcCC--cceEE-Ee--cCC--ccccCCEEEEcCCHHH
Confidence            34577788888999999999999998875  44322 22  123  3688999999988643

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=91.23  E-value=0.29  Score=44.90  Aligned_cols=31  Identities=32%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||.|..|.+.|..|+++|.+|+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999999999999999999985

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=91.22  E-value=0.31  Score=44.85  Aligned_cols=33  Identities=18%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLR-VGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~  103 (442)
                      ...++|+|+|-+|.++|+.|++.|.+ |.|+.+.
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            35689999999999999999999997 9999875

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.18  E-value=0.33  Score=45.12  Aligned_cols=32  Identities=22%  Similarity=0.510  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRG--LRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~  104 (442)
                      .|+|||+|.+|.++|+.|+..|  ..+.|+|+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4899999999999999999999  4799999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=91.16  E-value=0.47  Score=38.40  Aligned_cols=31  Identities=32%  Similarity=0.587  Sum_probs=28.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|+|||+ |..|.++|+.|...+.  ++.|+|..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            5899999 9999999999999865  69999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.06  E-value=0.28  Score=48.45  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|+|+|..|+++|..|++.|++|++.|+..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            358999999999999999999999999999753

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.05  E-value=0.33  Score=39.86  Aligned_cols=33  Identities=33%  Similarity=0.450  Sum_probs=27.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..++|+|-|-.|-.+|.+|...|.+|+|.|..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            569999999999999999999999999999975

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=90.72  E-value=0.39  Score=44.68  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..|.|||+|..|...|+.++..|. .|.|+|...
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            479999999999999999999876 999999853

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=90.67  E-value=0.44  Score=42.14  Aligned_cols=35  Identities=31%  Similarity=0.539  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      +..|+|||+|..|...|..|++.|. +++|+|...+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v   56 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV   56 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            5789999999999999999999998 6999998753

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=90.65  E-value=0.45  Score=43.95  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|+|||.|.+|..+|..|.+.|.+|+++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~  184 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARK  184 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3578999999999999999999999999999886

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=90.59  E-value=0.32  Score=47.91  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|.|||.|..|...|..|+++|++|.++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~   34 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY   34 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            589999999999999999999999999999874

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=90.48  E-value=2.3  Score=43.43  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=35.4

Q ss_pred             HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+++|++++.+.+|++|.++..   +  |+.+     ....+..|.+|+|||.+.
T Consensus        69 y~~~~i~L~~~~~v~~idr~~k---~--V~t~-----~g~~~~YDkLilATGS~p  113 (793)
T COG1251          69 YEENGITLYTGEKVIQIDRANK---V--VTTD-----AGRTVSYDKLIIATGSYP  113 (793)
T ss_pred             HHHcCcEEEcCCeeEEeccCcc---e--EEcc-----CCcEeecceeEEecCccc
Confidence            4578999999999999998773   3  2332     245788899999999876

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.42  E-value=0.41  Score=47.34  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|+|+|.+|+.++..|...|.+|+++|...
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999999999999999999999999999863

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=90.39  E-value=0.47  Score=41.73  Aligned_cols=31  Identities=35%  Similarity=0.563  Sum_probs=28.1

Q ss_pred             cEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.||| +|..|.+.|..|++.|++|+++++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~   33 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD   33 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            389997 7999999999999999999999774

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.36  E-value=0.41  Score=45.94  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||.|..|..+|..|...|.+|+++|..+
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            4579999999999999999999999999999764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=90.35  E-value=0.62  Score=40.19  Aligned_cols=35  Identities=26%  Similarity=0.522  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLR-VGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~~  105 (442)
                      +..|+|||+|..|..+|..|++.|.+ ++|+|...+
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            48899999999999999999999985 999998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.35  E-value=0.36  Score=44.78  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|+|+|..|...|+.|++.|..|+++-+.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            48999999999999999999998888887653

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.34  E-value=0.35  Score=50.57  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHH-HCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAA-TRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La-~~G~~V~liEk~~  104 (442)
                      -.|.|||+|..|...|+.++ ..|+.|+|+|...
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            35999999999999999998 8899999999863

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.32  E-value=0.62  Score=43.96  Aligned_cols=50  Identities=20%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      +..+.++-++++++++..++| + .-+.+...++++..+++.|.||+|||..
T Consensus       290 ~~~v~l~~~~ev~~~~~~G~g-~-~~l~~~~~~~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         290 KPDVRLLSLSEVQSVEPAGDG-R-YRLTLRHHETGELETVETDAVILATGYR  339 (436)
T ss_pred             CCCeeeccccceeeeecCCCc-e-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence            346899999999999999877 6 4566665567788889999999999985

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.30  E-value=0.43  Score=43.79  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|||.|.+|..+|..|...|.+|+++++.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~  183 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS  183 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467999999999999999999999999999986

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.28  E-value=0.49  Score=41.80  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      +..|+|||.|-.|..+|..|++.|. +++|+|...+
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            4789999999999999999999998 7999998754

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.23  E-value=0.54  Score=40.42  Aligned_cols=33  Identities=39%  Similarity=0.533  Sum_probs=29.4

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...++|+|+ |..|..+|..|++.|.+|+++.+.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999997 999999999999999999999764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.14  E-value=0.39  Score=44.33  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      |.|||.|..|...|..|++.|++|+++++..
T Consensus         2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            7899999999999999999999999998863

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.12  E-value=0.53  Score=46.44  Aligned_cols=33  Identities=30%  Similarity=0.317  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|+|.|.+|+++|..|+++|++|++.|...
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~   38 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL   38 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999999999999999999999764

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.01  E-value=0.4  Score=49.97  Aligned_cols=32  Identities=28%  Similarity=0.520  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHH-HCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAA-TRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La-~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..++ +.|+.|+|+|..+
T Consensus       306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            5999999999999999998 5899999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=89.99  E-value=0.47  Score=44.69  Aligned_cols=31  Identities=26%  Similarity=0.275  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--------CeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRG--------LRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--------~~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|+++|        .+|.|..+.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~   39 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE   39 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence            4899999999999999999999        999999873

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.85  E-value=0.44  Score=47.17  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|+|.|..|+++|..|.+.|++|++.|+..
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            369999999999999999999999999999764

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=89.76  E-value=0.36  Score=44.05  Aligned_cols=32  Identities=31%  Similarity=0.446  Sum_probs=28.6

Q ss_pred             CcEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|.| +|..|..++++|.+.|++|+++|--
T Consensus         3 ~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl   35 (343)
T KOG1371|consen    3 KHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNL   35 (343)
T ss_pred             cEEEEecCCcceehHHHHHHHhCCCcEEEEecc
Confidence            3578887 8999999999999999999999864

>PTZ00117 malate dehydrogenase; Provisional

Probab=89.65  E-value=0.6  Score=43.63  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRG-LRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~  104 (442)
                      ...|+|||+|..|.+.|+.|+..| ..++|+|...
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            457999999999999999999998 5899999864

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=89.63  E-value=0.63  Score=40.67  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|||||-+++.=+..|.+.|++|+||-..
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            457999999999999999999999999999653

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.57  E-value=0.52  Score=45.59  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||.|..|..+|..|...|.+|+++|..+
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            4569999999999999999999999999999864

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.56  E-value=0.45  Score=47.16  Aligned_cols=33  Identities=12%  Similarity=-0.033  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|+|.|..|.++|..|.+.|.+|++.|...
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            469999999999999999999999999999653

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=89.53  E-value=0.59  Score=40.27  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      +..|+|||+|..|+..|..|++.|. +++|+|...+
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v   56 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV   56 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence            4889999999999999999999998 5999998754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.51  E-value=0.48  Score=47.27  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|+|.|..|++++..|.+.|++|++.|..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36999999999999999999999999999965

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=89.49  E-value=0.56  Score=42.75  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...++|+|+|.+|.+.|..|++.|.+|+++++.
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999999999999999999999999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=89.45  E-value=0.56  Score=42.63  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      -.|+|+|+|-++.++++.|++.|. +|.|+.|.
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  155 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARN  155 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            369999999999999999999997 49999885

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=89.45  E-value=0.43  Score=46.89  Aligned_cols=34  Identities=35%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      --+|+|||+|.+|.-.|-+|++.|.+|+++-+.+
T Consensus       175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~  208 (443)
T COG2072         175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP  208 (443)
T ss_pred             CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence            3689999999999999999999999999999875

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.43  E-value=0.46  Score=45.10  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=26.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLR-VGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~  103 (442)
                      .|+|+|+|+.||.++..+...|.+ |+++|..
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~  202 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS  202 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            599999999999998888888875 7777775

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=89.29  E-value=0.44  Score=46.21  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|+|-|..|+++|..|.+.|++|++.|..+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~   40 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRP   40 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCC
Confidence            3579999999999999999999999999999765

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=89.20  E-value=0.32  Score=46.54  Aligned_cols=33  Identities=48%  Similarity=0.655  Sum_probs=28.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-------------CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRG-------------LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G-------------~~V~liEk~~  104 (442)
                      .+|+|||||..|.-.|-+|++.-             .+|+|+|+.+
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p  201 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP  201 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence            47999999999999999998741             3899999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	442
3da1_A	561	X-Ray Structure Of The Glycerol-3-Phosphate Dehydro		3e-43
2rgh_A	571	Structure Of Alpha-Glycerophosphate Oxidase From St		2e-37
2rgo_A	607	Structure Of Alpha-Glycerophosphate Oxidase From St		2e-33
2qcu_A	501	Crystal Structure Of Glycerol-3-Phosphate Dehydroge		5e-24
2r4j_A	501	Crystal Structure Of Escherichia Coli Semet Substit		1e-22

>pdb|3DA1|A Chain A, X-Ray Structure Of The Glycerol-3-Phosphate Dehydrogenase From Bacillus Halodurans Complexed With Fad. Northeast Structural Genomics Consortium Target Bhr167 Length = 561

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 197/383 (51%), Gaps = 18/383 (4%)
Query: 64  IAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY 123
           I   +   LD+LVIGGG TG G+ALDA  RG++ GLVE  DF+SGTSSRSTKL+HGG+RY
Sbjct: 11  IGEXSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEXNDFASGTSSRSTKLVHGGLRY 70
Query: 124 LEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFD--WFEVVYYWVGLKM 181
           L++        ++KLV    +ER  V  NAPH++     + P F    F      +GLK+
Sbjct: 71  LKQF-------EIKLVAEVGKERAIVYENAPHVTTPEWXLLPIFKDGTFGKFSTSLGLKV 123
Query: 182 YDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRXXXXXXXX 241
           YD +A           + +++ E  P L    +  +LKG  +Y + + +D+R        
Sbjct: 124 YDYLADVRKDERRYXLNEKQTLEKEPLL----RKENLKGGGIYVEYRTDDARLTLEIXKE 179
Query: 242 XXXXXXXXXXXXEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 301
                       +V S I D+   +++G   ++ L+      YAK VVNAAGP+ D++R+
Sbjct: 180 AVARGAVALNYXKVESFIYDQG--KVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLRE 237
Query: 302 LADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS-- 359
                    +  S GVH+V+     P    +      DGR +F +P  G+T  GTTD+  
Sbjct: 238 KDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRXIFAIPREGKTYIGTTDTFY 297
Query: 360 DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRD 419
           D  I       ED    +  A   + ++++   DV S+W+G+RPL  +   K +E   +D
Sbjct: 298 DKDIASPRXTVEDRDYILAAANYXFPSLRLTADDVESSWAGLRPLIHEEGKKASEISRKD 357
Query: 420 HVVCEDFPGLVTITGGKWTTYRR 442
            +   D  GL++I GGK T YR+
Sbjct: 358 EIFFSD-SGLISIAGGKLTGYRK 379

>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From Streptococcus Sp.: A Template For The Mitochondrial Alpha- Glycerophosphate Dehydrogenase Length = 571

Iteration: 1
 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 203/395 (51%), Gaps = 36/395 (9%)
Query: 64  IAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY 123
           I       LD+L+IGGG TG GVA+ AA  G++ GL+E +DF+ GTSSRSTKL+HGG+RY
Sbjct: 25  IQKXQQEELDLLIIGGGITGAGVAVQAAASGIKTGLIEXQDFAEGTSSRSTKLVHGGIRY 84
Query: 124 LEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFD-----WFEVVYYWVG 178
           L+   F+++     +V   + ER  V   APH+    P + P ++      F      V 
Sbjct: 85  LK--TFDVE-----VVADTVGERAVVQGIAPHIPKPDPXLLPIYEDEGATTFNXFSVKVA 137
Query: 179 LKMYDLVAGRHLLHLSRY-YSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRXXXX 237
             +YD +A         Y  + +E  E  P L    K   LKGA VY D + ND+R    
Sbjct: 138 XDLYDKLANVTGTKYENYTLTPEEVLEREPFL----KKEGLKGAGVYLDFRNNDARLVID 193
Query: 238 XXXXXXXXXXXXXXXXEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297
                           + +  + +   ++I+G + R+ L+ +  +  AK+V+N +GP+ D
Sbjct: 194 NIKKAAEDGAYLVSKXKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD 251
Query: 298 SVRKLA-DQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK-------TKDGRVVFMLPWL 349
            VR L   + V P   P+ G+H+V+      +   L VP+        +DGR VF +P  
Sbjct: 252 KVRNLNFTRPVSPKXRPTKGIHLVV------DAKKLPVPQPTYFDTGKQDGRXVFAIPRE 305
Query: 350 GRTVAGTTDSDTVITLL-PEPHEDEIQFILDAISD-YLNVKVRRTDVLSAWSGIRPLAMD 407
            +T  GTTD+D       P+  ++++ ++LD I+  Y    +   D+ ++W+G+RPL + 
Sbjct: 306 NKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPEANITLADIEASWAGLRPLLIG 365
Query: 408 PSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR 442
            S   + +ISR   +  +  GL+T++GGK T YR+
Sbjct: 366 NSGSPS-TISRGSSLEREPDGLLTLSGGKITDYRK 399

>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From Streptococcus Sp.: A Template For The Mitochondrial Alpha- Glycerophosphate Dehydrogenase Length = 607

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 169/335 (50%), Gaps = 35/335 (10%)
Query: 94  GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNA 153
           G++ GL+E +DF+ GTSSRSTKL+HGG+RYL+   F+++     +V   + ER  V   A
Sbjct: 41  GIKTGLIEMQDFAEGTSSRSTKLVHGGIRYLK--TFDVE-----VVADTVGERAVVQGIA 93
Query: 154 PHLSNALPCMTPCFD-----WFEVVYYWVGLKMYDLVAGRHLLHLSRY-YSAQESAELFP 207
           PH+    P + P ++      F +    V + +YD +A         Y  + +E  E  P
Sbjct: 94  PHIPKPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREP 153
Query: 208 TLAMKAKDRSLKGAVVYYDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEASNRI 267
            L    K   LKGA VY D + ND+R                    + +  + +   ++I
Sbjct: 154 FL----KKEGLKGAGVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQI 207
Query: 268 IGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA-DQNVQPMICPSSGVHIVLPDYYS 326
           +G + R+ L+ +  +  AK+V+N +GP+ D VR L   + V P + P+ G+H+V+     
Sbjct: 208 VGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVV----- 262
Query: 327 PEGMGLIVPK-------TKDGRVVFMLPWLGRTVAGTTDSDTVITLL-PEPHEDEIQFIL 378
            +   L VP+        +DGR+VF +P   +T  GTTD+D       P+  ++++ ++L
Sbjct: 263 -DAKKLPVPQPTYFDTGKQDGRMVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLL 321
Query: 379 DAISD-YLNVKVRRTDVLSAWSGIRPLAMDPSAKN 412
           D I+  Y    +   D+ ++W+G+RPL +  S  +
Sbjct: 322 DVINHRYPEANITLADIEASWAGLRPLLIGNSGSD 356

>pdb|2QCU|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase From Escherichia Coli Length = 501

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 68/375 (18%)
Query: 95  LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAP 154
           L V ++E +D +  TSS S+KLIHGG+RYLE   F       +LV  AL ER+ +++ AP
Sbjct: 27  LSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEF-------RLVSEALAEREVLLKMAP 79
Query: 155 HLSNAL-------PCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP 207
           H++  +       P + P +         +GL MYD +  R  L  S       ++ L P
Sbjct: 80  HIAFPMRFRLPHRPHLRPAW------MIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKP 133
Query: 208 TLAMKAKDRSLKGAVVYYDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEASNRI 267
                     +K    Y D  ++D+R                    EV++  +  ++ R 
Sbjct: 134 ---------EIKRGFEYSDCWVDDAR------LVLANAQMVVRKGGEVLTRTRATSARRE 178
Query: 268 IGARI---RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPS-------SGV 317
            G  I    +  +GK++   A+ +VNA GP+   V++  D     M  PS        G 
Sbjct: 179 NGLWIVEAEDIDTGKKYSWQARGLVNATGPW---VKQFFDDG---MHLPSPYGIRLIKGS 232
Query: 318 HIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR-TVAGTTDSDTVITLLPEP-----HE 371
           HIV+P  ++ +   ++  + +D R+VF++PW+   ++ GTTD    +    +P      E
Sbjct: 233 HIVVPRVHTQKQAYIL--QNEDKRIVFVIPWMDEFSIIGTTD----VEYKGDPKAVKIEE 286
Query: 372 DEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CEDFPG-- 428
            EI ++L+  + +   ++ R D++  +SG+RPL  D S  + ++I+RD+ +   D  G  
Sbjct: 287 SEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDES-DSPQAITRDYTLDIHDENGKA 345
Query: 429 -LVTITGGKWTTYRR 442
            L+++ GGK TTYR+
Sbjct: 346 PLLSVFGGKLTTYRK 360

>pdb|2R4J|A Chain A, Crystal Structure Of Escherichia Coli Semet Substituted Glycerol-3-Phosphate Dehydrogenase In Complex With Dhap Length = 501

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 68/375 (18%)
Query: 95  LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAP 154
           L V  +E +D +  TSS S+KLIHGG+RYLE   F       +LV  AL ER+ +++ AP
Sbjct: 27  LSVLXLEAQDLACATSSASSKLIHGGLRYLEHYEF-------RLVSEALAEREVLLKXAP 79
Query: 155 HLSNAL-------PCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP 207
           H++          P + P +         +GL MYD +  R  L  S       ++ L P
Sbjct: 80  HIAFPXRFRLPHRPHLRPAW------MIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKP 133
Query: 208 TLAMKAKDRSLKGAVVYYDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEASNRI 267
                     +K    Y D  ++D+R                    EV++  +  ++ R 
Sbjct: 134 ---------EIKRGFEYSDCWVDDAR------LVLANAQXVVRKGGEVLTRTRATSARRE 178
Query: 268 IGARI---RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPS-------SGV 317
            G  I    +  +GK++   A+ +VNA GP+   V++  D        PS        G 
Sbjct: 179 NGLWIVEAEDIDTGKKYSWQARGLVNATGPW---VKQFFDDGXH---LPSPYGIRLIKGS 232
Query: 318 HIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR-TVAGTTDSDTVITLLPEP-----HE 371
           HIV+P  ++ +   ++  + +D R+VF++PW    ++ GTTD    +    +P      E
Sbjct: 233 HIVVPRVHTQKQAYIL--QNEDKRIVFVIPWXDEFSIIGTTD----VEYKGDPKAVKIEE 286
Query: 372 DEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CEDFPG-- 428
            EI ++L+  + +   ++ R D++  +SG+RPL  D S  + ++I+RD+ +   D  G  
Sbjct: 287 SEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDES-DSPQAITRDYTLDIHDENGKA 345
Query: 429 -LVTITGGKWTTYRR 442
            L+++ GGK TTYR+
Sbjct: 346 PLLSVFGGKLTTYRK 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	0.0
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	0.0
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	1e-171
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	6e-16
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-15
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	3e-14
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	2e-13
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	2e-12
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	7e-12
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	2e-11
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	6e-11
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	4e-10
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	1e-09
3dme_A	369	Conserved exported protein; structural genomics, P	4e-09
3dme_A	369	Conserved exported protein; structural genomics, P	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	9e-08
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-06
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	3e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	3e-05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	6e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	2e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	4e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	5e-04
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	6e-04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	7e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	8e-04

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Length = 561

 Score =  537 bits (1386), Expect = 0.0
 Identities = 134/386 (34%), Positives = 203/386 (52%), Gaps = 18/386 (4%)

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
              I   +   LD+LVIGGG TG G+ALDA  RG++ GLVE  DF+SGTSSRSTKL+HGG
Sbjct: 8   DKCIGEMSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKLVHGG 67

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDW--FEVVYYWVG 178
           +RYL+         ++KLV    +ER  V  NAPH++     + P F    F      +G
Sbjct: 68  LRYLK-------QFEIKLVAEVGKERAIVYENAPHVTTPEWMLLPIFKDGTFGKFSTSLG 120

Query: 179 LKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGL 238
           LK+YD +A           + +++ E  P L    +  +LKG  +Y + + +D+RL + +
Sbjct: 121 LKVYDYLADVRKDERRYMLNEKQTLEKEPLL----RKENLKGGGIYVEYRTDDARLTLEI 176

Query: 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298
              A   GA  LN+ +V S I D+   +++G   ++ L+      YAK VVNAAGP+ D+
Sbjct: 177 MKEAVARGAVALNYMKVESFIYDQ--GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDT 234

Query: 299 VRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 358
           +R+         +  S GVH+V+     P    +      DGR++F +P  G+T  GTTD
Sbjct: 235 LREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPREGKTYIGTTD 294

Query: 359 SD-TVITLLPEPHEDEIQFILDAISDYL-NVKVRRTDVLSAWSGIRPLAMDPSAKNTESI 416
           +        P    ++  +IL A +    ++++   DV S+W+G+RPL  +   K    I
Sbjct: 295 TFYDKDIASPRMTVEDRDYILAAANYMFPSLRLTADDVESSWAGLRPLIHEEG-KKASEI 353

Query: 417 SRDHVVCEDFPGLVTITGGKWTTYRR 442
           SR   +     GL++I GGK T YR+
Sbjct: 354 SRKDEIFFSDSGLISIAGGKLTGYRK 379

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Length = 571

 Score =  518 bits (1336), Expect = 0.0
 Identities = 128/399 (32%), Positives = 212/399 (53%), Gaps = 28/399 (7%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
            +R       I       LD+L+IGGG TG GVA+ AA  G++ GL+E +DF+ GTSSRS
Sbjct: 19  KTR----QDSIQKMQQEELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGTSSRS 74

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFD----- 168
           TKL+HGG+RYL+          +++V   + ER  V   APH+    P + P ++     
Sbjct: 75  TKLVHGGIRYLK-------TFDVEVVADTVGERAVVQGIAPHIPKPDPMLLPIYEDEGAT 127

Query: 169 WFEVVYYWVGLKMYDLVAGRH-LLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227
            F +    V + +YD +A      + +   + +E  E  P L    K   LKGA VY D 
Sbjct: 128 TFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFL----KKEGLKGAGVYLDF 183

Query: 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV 287
           + ND+RL +     AA  GA +++  + +  + +   ++I+G + R+ L+ +  +  AK+
Sbjct: 184 RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG--DQIVGVKARDLLTDEVIEIKAKL 241

Query: 288 VVNAAGPFCDSVRKLA-DQNVQPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFM 345
           V+N +GP+ D VR L   + V P + P+ G+H+V+     P           +DGR+VF 
Sbjct: 242 VINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFA 301

Query: 346 LPWLGRTVAGTTDSDTVITLL-PEPHEDEIQFILDAISD-YLNVKVRRTDVLSAWSGIRP 403
           +P   +T  GTTD+D       P+  ++++ ++LD I+  Y    +   D+ ++W+G+RP
Sbjct: 302 IPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPEANITLADIEASWAGLRP 361

Query: 404 LAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR 442
           L +  S  +  +ISR   +  +  GL+T++GGK T YR+
Sbjct: 362 LLIGNS-GSPSTISRGSSLEREPDGLLTLSGGKITDYRK 399

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Length = 501

 Score =  487 bits (1257), Expect = e-171
 Identities = 112/380 (29%), Positives = 188/380 (49%), Gaps = 30/380 (7%)

Query: 71  PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFN 130
             D++VIGGG  G G+A DAA RGL V ++E +D +  TSS S+KLIHGG+RYLE     
Sbjct: 3   TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLE----- 57

Query: 131 LDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYW-VGLKMYDLVAGRH 189
             + + +LV  AL ER+ +++ APH++  +    P        +   +GL MYD +  R 
Sbjct: 58  --HYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRT 115

Query: 190 LLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAV 249
            L  S       ++ L P          +K    Y D  ++D+RL +  A      G  V
Sbjct: 116 SLPGSTGLRFGANSVLKP---------EIKRGFEYSDCWVDDARLVLANAQMVVRKGGEV 166

Query: 250 LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV-RKLADQNVQ 308
           L      S  ++   N +      +  +GK++   A+ +VNA GP+              
Sbjct: 167 LTRTRATSARRE---NGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSP 223

Query: 309 PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR-TVAGTTDSD-TVITLL 366
             I    G HIV+P  ++ +   ++  + +D R+VF++PW+   ++ GTTD +       
Sbjct: 224 YGIRLIKGSHIVVPRVHTQKQAYIL--QNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKA 281

Query: 367 PEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF 426
            +  E EI ++L+  + +   ++ R D++  +SG+RPL  D S  + ++I+RD+ +    
Sbjct: 282 VKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDES-DSPQAITRDYTLDIHD 340

Query: 427 ----PGLVTITGGKWTTYRR 442
                 L+++ GGK TTYR+
Sbjct: 341 ENGKAPLLSVFGGKLTTYRK 360

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 78.0 bits (193), Expect = 6e-16
 Identities = 61/353 (17%), Positives = 108/353 (30%), Gaps = 69/353 (19%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           + +VIGGG  G  +A   A       L E       T+S +     G +     A    +
Sbjct: 19  EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAA----GMLG----AHAECE 70

Query: 133 YGQ--LKLVFHALEERKQVIRNAPHLSNALPCMTPC-FDWFEVVYYWVGLKMYDLVAGRH 189
                     H+             L   L  ++           + +     D++  R 
Sbjct: 71  ERDAFFDFAMHSQRL-------YKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQ 123

Query: 190 LLHLSRYY--SAQESAELFPTLAMKAKDRSLKGAVVY-YDGQMNDSRLNVGLALTAALAG 246
           +  L      S +E  E  P          + GA     D  +    +       A + G
Sbjct: 124 MDDLDSVSWYSKEEVLEKEPYA-----SGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLG 178

Query: 247 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306
           A +  H  V+ + +D      +  +        +   +A  VV A+G +     K    N
Sbjct: 179 AEIFEHTPVLHVERD---GEALFIK----TPSGDV--WANHVVVASGVWSGMFFKQLGLN 229

Query: 307 --VQP----MICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTV--AGTTD 358
               P     +   +    +    Y       IVP+ K GR+V      G T+     ++
Sbjct: 230 NAFLPVKGECLSVWNDDIPLTKTLYHDH--CYIVPR-KSGRLVV-----GATMKPGDWSE 281

Query: 359 SDTVITLLPEPHEDEIQFILDAISDYL----NVKVRRTDVLSAWSGIRPLAMD 407
           +  +           ++ ++      L    N+KV R      W+G+RP   D
Sbjct: 282 TPDL---------GGLESVMKKAKTMLPAIQNMKVDRF-----WAGLRPGTKD 320

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 54/330 (16%), Positives = 97/330 (29%), Gaps = 44/330 (13%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++V+GGG  G   A   A RG RV ++ER  F +           G  R+        D
Sbjct: 6   DVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGT-----SGAERHWRLQYTQED 60

Query: 133 YGQLKL----VFHALEER--KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 186
             +L L    ++ ALE R  +++I     L              +VV     +     + 
Sbjct: 61  LFRLTLETLPLWRALESRCERRLIHEIGSLWFGDT---------DVVTNEGQISGTAAMM 111

Query: 187 GRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG 246
            +  +    +  A +    F    +    R  +G +    G ++       L   A  AG
Sbjct: 112 DKLSVRY-EWLKATDIERRFGFRGL---PRDYEGFLQPDGGTIDVRGTLAALFTLAQAAG 167

Query: 247 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306
           A +     V  L+ D          +        +   A  VV A GP+ + + +     
Sbjct: 168 ATLRAGETVTELVPD-------ADGVSVTTDRGTYR--AGKVVLACGPYTNDLLEPLGAR 218

Query: 307 --VQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTV---------AG 355
                     +      P   +P       P  +D  + +                    
Sbjct: 219 LAYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFE 278

Query: 356 TTDSDTVITLLPEPHEDEIQFILDAISDYL 385
               D            ++  +   + D+L
Sbjct: 279 VDPLDHPSAATGVADRRQMDRLSGWLRDHL 308

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 49/350 (14%), Positives = 88/350 (25%), Gaps = 53/350 (15%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D+++IG G+ G      A   GL V + +         S      HG  R     +    
Sbjct: 4   DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH-----HGDTR-----LIRHA 53

Query: 133 YG----QLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGR 188
           YG     + LV  A      +       +   P               +G      +A  
Sbjct: 54  YGEGEKYVPLVLRAQM----LWDELSRHNEDDPIFVRSG------VINLGPADSTFLANV 103

Query: 189 HLLHLS-----RYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAA 243
                          AQ     +P + +     +  G      G +            A 
Sbjct: 104 AHSAEQWQLNVEKLDAQGIMARWPEIRV---PDNYIGLFETDSGFLRSELAIKTWIQLAK 160

Query: 244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303
            AG A L +  V ++  D          +    +  E+   AK  +  AG +   +  L 
Sbjct: 161 EAGCAQLFNCPVTAIRHD-------DDGVTIETADGEY--QAKKAIVCAGTWVKDL--LP 209

Query: 304 DQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTV------AGTT 357
           +  VQP+       +     Y           +  +G   +  P     +       G  
Sbjct: 210 ELPVQPVR-KVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQV 268

Query: 358 DSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMD 407
                  +       +       + + L         L   +     + D
Sbjct: 269 IHSADERVPFAEVVSDGSEAFPFLRNVL---PGIGCCLYGAACTYDNSPD 315

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 56/400 (14%), Positives = 114/400 (28%), Gaps = 74/400 (18%)

Query: 69  SNPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA 127
           +    +L++G G  G   AL  A RG   V +++     S  S+      +   + +   
Sbjct: 4   TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAG-----NDVNKVISSG 58

Query: 128 VFNLDYGQL----KLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVG----- 178
            ++ +  ++     L   A    K      P+             + +            
Sbjct: 59  QYSNNKDEIEVNEILAEEAFNGWKNDPLFKPY-------------YHDTGLLMSACSQEG 105

Query: 179 -LKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNV 236
             ++   V      +L      ++  +L P   ++      KG       G  +     V
Sbjct: 106 LDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALV 165

Query: 237 GLALTAALAGAAVLNH---AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 293
             A  A   G   +       V++LI +   N + GA   +   GK +   A+     AG
Sbjct: 166 AAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTAD---GKIW--RAERTFLCAG 218

Query: 294 PFCDSVRKLADQNVQPMICPSSGVHIVLPD--YYSPEGMGLIV---------PKTKDGRV 342
                  +  D   Q      + VHI L        + + +I          P  + G +
Sbjct: 219 AS---AGQFLDFKNQLRPTAWTLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEI 275

Query: 343 VFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNV---KVRRTDVLSAWS 399
                  G T    +   T+++ +P       +     +   L     ++       A  
Sbjct: 276 KICDEHPGYTNMVQSADGTMMS-IPFEKTQIPKEAETRVRALLKETMPQLADRPFSFARI 334

Query: 400 GIRPLAMDPSAKNTESISRDH--VVCE--DFPGLVTITGG 435
                          + + +   ++     +  LV   G 
Sbjct: 335 C------------WCADTANREFLIDRHPQYHSLVLGCGA 362

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 45/292 (15%), Positives = 89/292 (30%), Gaps = 62/292 (21%)

Query: 73  DILVIGGGATGCGVA--LDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
           D +++GGG  G   A  L A   G+  V ++E+   + G  +R+T      +R       
Sbjct: 23  DAIIVGGGGHGLATAYFL-AKNHGITNVAVLEKGWLAGGNMARNT----TIIRSN----- 72

Query: 130 NLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRH 189
            L      +   +L+    +    P        +     + +     +   + D+     
Sbjct: 73  YLWDESAGIYEKSLK----LWEQLPEDLE-YDFL-----FSQRGVLNLAHTLGDVRESVR 122

Query: 190 LLHLSRYY-------SAQESAELFPTLAMKAKDRS-LKGAVVY-YDGQMNDSRLNVGLAL 240
            +  ++            +  E  P +      R  + GA      G      +    A 
Sbjct: 123 RVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFAR 182

Query: 241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300
            A   G  ++ + EV   IKD    ++ G +     +       A  V  A       + 
Sbjct: 183 KANEMGVDIIQNCEVTGFIKDG--EKVTGVK----TTRGTIH--AGKVALAGAGHSSVLA 234

Query: 301 KLADQNV------------------QPMICPSSGVHIVLPDYYSPEGMGLIV 334
           ++A   +                   P +  S+ +H+    Y S    G +V
Sbjct: 235 EMAGFELPIQSHPLQALVSELFEPVHPTVVMSNHIHV----YVSQAHKGELV 282

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 65.7 bits (161), Expect = 7e-12
 Identities = 52/299 (17%), Positives = 104/299 (34%), Gaps = 81/299 (27%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           +I+VIGGG  G  +A + A RG  V ++E+    SG++ R       G+R         D
Sbjct: 7   EIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCG----TGIRQQ-----FND 57

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
              ++++  ++E  K+        S           + +  Y ++     ++   +  + 
Sbjct: 58  EANVRVMKRSVELWKK-------YSEEYGFS-----FKQTGYLFLLYDDEEVKTFKRNIE 105

Query: 193 LSRYY-------SAQESAELFPTLAMKAKDRSLKGAVVYY---DGQMNDSRLNVGLALTA 242
           +   +       + +E+ E+ P L +      +  A   +   DG+ +        A+ A
Sbjct: 106 IQNKFGVPTKLITPEEAKEIVPLLDISE----VIAAS--WNPTDGKADPFEATTAFAVKA 159

Query: 243 ALAGAAVLNHAEVISLIKDEASNRIIGAR-----IRNNLSGKEFDTYAKVVVNAAGPFCD 297
              GA +L + EV   + +   N I G +     I+             +VVNA   + +
Sbjct: 160 KEYGAKLLEYTEVKGFLIEN--NEIKGVKTNKGIIK-----------TGIVVNATNAWAN 206

Query: 298 SVRKLA--DQNV--------------------QPMICPSSGVHIVLPDYYSPEGMGLIV 334
            +  +A     +                     PM+      H     Y +    G I+
Sbjct: 207 LINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVISFKYGHA----YLTQTFHGGII 261

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 57/342 (16%), Positives = 98/342 (28%), Gaps = 53/342 (15%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNL 131
           D LVIG G  G       +  G RV ++ERE      ++ RS                  
Sbjct: 11  DYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQPGYHSTGRSA----AHYTV-----AYG 60

Query: 132 DYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLL 191
                 L   +               +  P               V     D    R   
Sbjct: 61  TPQVRALTAASRA-----------FFDNPPAGFCEHPLLSPRPEMVVDFSDDPEELRRQY 109

Query: 192 HLSRYY-------SAQESAELFPTLAMKAKDRSLKGAVVYY---DGQMNDSRLNVGLALT 241
              +          A+++  + P L        + GA   Y      ++   L+ G    
Sbjct: 110 ESGKALVPQMRLLDAEQACSIVPVLRRDK----VFGAT--YDPTGADIDTDALHQGYLRG 163

Query: 242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 301
                  VL + E + + +                    +   A V+VNAAG +CD++  
Sbjct: 164 IRRNQGQVLCNHEALEIRRV-------DGAWEVRCDAGSYR--AAVLVNAAGAWCDAIAG 214

Query: 302 LADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD-GRVVFMLPWLGRTVAGTTDSD 360
           LA      +  P      +      P       P         ++ P  G  +    ++D
Sbjct: 215 LAGVRPLGLQ-PKRRSAFIFAP--PPGIDCHDWPMLVSLDESFYLKPDAGMLLGSPANAD 271

Query: 361 TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIR 402
            V     +P + +I   +  I +   + +RR      W+G+R
Sbjct: 272 PVEAHDVQPEQLDIATGMYLIEEATTLTIRR--PEHTWAGLR 311

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 36/234 (15%), Positives = 68/234 (29%), Gaps = 47/234 (20%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++V+G G+ G       A +G++  LV+   F    ++ S    HG  R     +    
Sbjct: 5   DVIVVGAGSMGMAAGYQLAKQGVKTLLVDA--FDPPHTNGSH---HGDTR-----IIRHA 54

Query: 133 YG----QLKLV------FHALEER--KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
           YG     + L       ++ LE+    ++      L        P  +   V       K
Sbjct: 55  YGEGREYVPLALRSQELWYELEKETHHKIFTKTGVLV-----FGPKGESAFVAETMEAAK 109

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLAL 240
            + L                E  + +P + +     +         G +           
Sbjct: 110 EHSLTV--------DLLEGDEINKRWPGITV---PENYNAIFEPNSGVLFSENCIRAYRE 158

Query: 241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294
            A   GA VL H  V                ++   +   +   A  ++ + G 
Sbjct: 159 LAEARGAKVLTHTRVEDFDIS-------PDSVKIETANGSYT--ADKLIVSMGA 203

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 41/253 (16%), Positives = 72/253 (28%), Gaps = 66/253 (26%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV----------- 121
           D++V G G  G   +++AA  G  V ++ER     G ++ +     G +           
Sbjct: 43  DVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAG----GFIYLGGGTPLQKA 98

Query: 122 -----------RYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWF 170
                       ++  A+        + +             +             ++W 
Sbjct: 99  CGFDDSPENMKTFMMAAL--GPGADEEKI-------TDYCEGSV----------EHYNWL 139

Query: 171 E---VVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227
               V +                      YS  E+A  F  +A  A  R     +     
Sbjct: 140 VDCGVPFKESFWGEPG---WEPPFDDGLMYSGGENAAPFNEIAAPA-PRGHVPQMDG--- 192

Query: 228 QMNDSRLNVGLALTAAL------AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEF 281
                    G  L   L       G        V +L+ D+ + R++G   +    GKE 
Sbjct: 193 -KRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAKQY--GKEV 248

Query: 282 DTYA-KVVVNAAG 293
              A + VV A G
Sbjct: 249 AVRARRGVVLATG 261

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 48/375 (12%), Positives = 100/375 (26%), Gaps = 62/375 (16%)

Query: 73  DILVIGGGATGCGVALD-AATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFN 130
           D +V+G G  G   A       G  V +V+      SG S RS        R        
Sbjct: 25  DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGDSGRSM----AAFRTF-----F 75

Query: 131 LDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVG-----LKMYDLV 185
                  +    +     +  +A      L          +  Y +V       ++ + +
Sbjct: 76  SSTMNRLVAGSTVR----LFEDAQRGGEDLG-------LVKSGYLFVYDRERWREVEEPL 124

Query: 186 A-GRHLLHLSRYYSAQESAELFPTLAMKAKDRS--------LKGAVVYY---DGQMNDSR 233
                          +E           +            ++GAV       G ++  +
Sbjct: 125 REAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEVLGVGDVEGAV--LIRSAGFLDAEK 182

Query: 234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK---------EFDTY 284
           +       A+ AG   +    V+ +         I          +              
Sbjct: 183 VVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEV 242

Query: 285 AKVVVNAAGPFCDSVRKLADQN--VQPMI-------CPSSGVHIVLPDYYSPEGMGLIVP 335
            + +V AAG + + +      +   +P           + G+  ++ +          + 
Sbjct: 243 GEKLVVAAGVWSNRLLNPLGIDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLI 302

Query: 336 KTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKV---RRT 392
                 +V   P  G      +D+      L E  + E  +   AI   L++ +   +  
Sbjct: 303 ILPKRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYLPQFQDA 362

Query: 393 DVLSAWSGIRPLAMD 407
                W+G   ++ D
Sbjct: 363 YPSGGWAGHYDISFD 377

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGGVRY 123
           D +VIG G  G  +A   A  G  V + E      +GTSSR++++IH G+ Y
Sbjct: 6   DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYY 57

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 36/187 (19%)

Query: 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297
               A   GA ++ H  +I+          +          +      +V++NAAG    
Sbjct: 156 YQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFG-----GAEPMTLSCRVLINAAGLHAP 210

Query: 298 SVRKLADQNVQPMICPS----------SGVHIV------LPDYYSPEGMGLIVPKTKDGR 341
            + +  +   +  I P           +G          +P      G+G+ +     G+
Sbjct: 211 GLARRIEGIPRDSIPPEYLCKGSYFTLAGRAPFSRLIYPVPQ---HAGLGVHLTLDLGGQ 267

Query: 342 VVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGI 401
                   G         D  +                A+  Y    +    +   ++GI
Sbjct: 268 A-----KFGPDTEWIATEDYTLD------PRRADVFYAAVRSYWP-ALPDGALAPGYTGI 315

Query: 402 RPLAMDP 408
           RP    P
Sbjct: 316 RPKISGP 322

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 7e-08
 Identities = 74/486 (15%), Positives = 143/486 (29%), Gaps = 162/486 (33%)

Query: 25  FTRPSIAGNDRGPSPDLV-----RSQI-NDSKAVVP---SRVVQESALI-AANNSNPLDI 74
           F    I    R PS         R ++ ND++       SR+     L  A     P   
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 75  LVIGGGATGCG---VALDAATRGLRVGLVEREDF-----SSGTSSRSTKLIHGGVRYLEK 126
           ++I G   G G   VALD      +V    + DF     +    +    ++    + L +
Sbjct: 153 VLIDGVL-GSGKTWVALDVC-LSYKV--QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 127 AVFNL----DYGQ-LKLVFHALEER-KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
              N     D+   +KL  H+++   ++++++ P+  N L  +        V        
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVL----L--NVQNAKA-WN 260

Query: 181 MYD-----LVAGRH----------------LLHLSRYYSAQESAELFPT-LAMKAKDRSL 218
            ++     L+  R                 L H S   +  E   L    L  + +D   
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--- 317

Query: 219 KGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSG 278
                                    L    +  +   +S+I            IR+ L+ 
Sbjct: 318 -------------------------LPREVLTTNPRRLSII---------AESIRDGLA- 342

Query: 279 KEFDTYAKVVVNAAGPFCD-SVRKLADQNVQPM-----ICPSSGVHI---VL------PD 323
             +D +  V  +      + S+  L     + M     + P S  HI   +L        
Sbjct: 343 -TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVI 400

Query: 324 YYSPEGM-------GLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVI------------- 363
                 +        L+  + K+  +   +P +   +    +++  +             
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 364 ----TLLPEPHEDE--IQFI---LDAISD----------YLN-----VKVRRTDVLSAWS 399
                L+P P+ D+     I   L  I            +L+      K+R     +AW+
Sbjct: 459 FDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS--TAWN 515

Query: 400 GIRPLA 405
               + 
Sbjct: 516 ASGSIL 521

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Length = 689

 Score = 53.3 bits (127), Expect = 9e-08
 Identities = 52/345 (15%), Positives = 91/345 (26%), Gaps = 28/345 (8%)

Query: 65  AANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYL 124
               +   DI +IGGG      AL    RG  V L   +       ++       G  Y 
Sbjct: 258 RPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCADA----QPAQGASGNRQGALY- 312

Query: 125 EKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDL 184
              + N     L+  F +          A    + L      FD        +       
Sbjct: 313 --PLLNGKNDALETFFTS------AFTFARRQYDQLLEQGIAFDHQWCGVSQLAFDDKSR 364

Query: 185 VAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAAL 244
                +LH        E+        +   D +  G      G +  S L   L + A  
Sbjct: 365 GKIEKMLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLTHALMMLAQQ 424

Query: 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304
            G       E+  L + ++  ++            +   +   V+ A G          +
Sbjct: 425 NGMTCHYQHELQRLKRIDSQWQLT-------FGQSQAAKHHATVILATGHRLPEW----E 473

Query: 305 QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTT--DSDTV 362
           Q     +    G    +P   +P    L      DG +  + P       G +    D  
Sbjct: 474 QTHHLPLSAVRGQVSHIPT--TPVLSQLQQVLCYDGYLTPVNPANQHHCIGASYQRGDIA 531

Query: 363 ITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMD 407
                   ++  + +L  +      +        A  G+R    D
Sbjct: 532 TDFRLTEQQENRERLLRCLPQVSWPQQVDVSDNQARCGVRCAIRD 576

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 43/257 (16%), Positives = 76/257 (29%), Gaps = 80/257 (31%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV---- 128
            +LV+G G+ G   +L A   G  V LV++  FS G S  S   ++      + A     
Sbjct: 123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVED 182

Query: 129 -----------FNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDW-------F 170
                             +KLV         +   +               W        
Sbjct: 183 KVEWFIEDAMKGGRQQNDIKLV-------TILAEQSA----------DGVQWLESLGANL 225

Query: 171 EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQES-AELFPTLAMKAKDRSLKGAVVYYDGQM 229
           + +    G      V   H     R +  + S  E+  TL   AK++   G     +   
Sbjct: 226 DDLKRSGG----ARVDRTH-----RPHGGKSSGPEIIDTLRKAAKEQ---GIDTRLN--- 270

Query: 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVV 289
                                  + V+ L+ ++  + ++GA +        +   AK VV
Sbjct: 271 -----------------------SRVVKLVVND-DHSVVGAVVHGK-HTGYYMIGAKSVV 305

Query: 290 NAAGPFCDSVRKLADQN 306
            A G +  +   +A   
Sbjct: 306 LATGGYGMNKEMIAYYR 322

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Length = 676

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 53/344 (15%), Positives = 95/344 (27%), Gaps = 42/344 (12%)

Query: 71  PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFN 130
             +  +IGGG     ++L    RG +V L   ++      +        G  Y    + +
Sbjct: 272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADE----APALGASGNRQGALY---PLLS 324

Query: 131 LDYGQLKLVF-----HALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLV 185
                L   F      A     Q+     H            DW  V       K    +
Sbjct: 325 KHDEALNRFFSNAFTFARRFYDQLPVKFDH------------DWCGVTQLGWDEKSQHKI 372

Query: 186 AGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALA 245
           A    + L    +    A     +   A + S  G      G +  + L   +   A   
Sbjct: 373 AQMLSMDLPAELAVAVEANAVEQITGVATNCS--GITYPQGGWLCPAELTRNVLELAQQQ 430

Query: 246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305
           G  +    ++ +  + +    +  A         +      VVV A G     + + +  
Sbjct: 431 GLQIYYQYQLQNFSRKDDCWLLNFAG--------DQQATHSVVVLANGH---QISRFSQT 479

Query: 306 NVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTT--DSDTVI 363
           +  P+    +G    +P   +PE   L      DG +    P       G +        
Sbjct: 480 STLPVY-SVAGQVSHIPT--TPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDT 536

Query: 364 TLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMD 407
               +  +   Q ++D        K        A  G+R    D
Sbjct: 537 AYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCATRD 580

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 54  PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
             R  Q +       S   D L++G G  G  +A   A+ G RV +V+R     G  +  
Sbjct: 12  NERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN-AYD 70

Query: 114 TKLIHGGVRYLEKAVFNLDYGQLKLVFH 141
                G + +         YG    +FH
Sbjct: 71  CYDDAGVLIH--------PYG--PHIFH 88

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRST 114
           D+++IG G  G   A+ A   G +V L+E+E    G +  + 
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAA 169

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 21/55 (38%)

Query: 69  SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY 123
            +   ++V+G G  G   AL  A +G  V ++ R+     +S        G    
Sbjct: 4   HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWT 58

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSS---GTSSRSTKLIHGGVRYLEKA 127
           D+LVIG G  G   A      G +V +VE++ F     G S     L+   + +L++A
Sbjct: 7   DVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES-----LLPRCMEHLDEA 59

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 22/122 (18%)

Query: 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297
           +   A   G  + +    +  I ++    + GA + N  + +E   Y+KVVV A G    
Sbjct: 106 VLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163

Query: 298 SVRKLA-------DQNVQPM-------------ICPSSGVHIVLPDYYSPEGMGLIVPKT 337
              KL        D + +               I     + I +    SP G     PK 
Sbjct: 164 FRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKG 223

Query: 338 KD 339
           K+
Sbjct: 224 KN 225

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDF 105
           D+L+IGGG  G   A   + RGL++ LV+ + +
Sbjct: 8   DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 44  SQINDSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103
            +   + A +     +  A +A+   + +D++V+G G  G   A+ A   G +V L+E+E
Sbjct: 99  LRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKE 158

Query: 104 DFSSGTSSRST 114
               G +  + 
Sbjct: 159 PVIGGNAKLAA 169

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 18/156 (11%)

Query: 62  ALIAANNSNPLDILVIGGGATGCGVALDAATR-GLRVGLVEREDFSSGTSSRSTKLIHGG 120
           A+   +    +D+LVIG G TG G A       G    +V+  +   G +  ST +   G
Sbjct: 1   AIAMTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA--STDVTPEG 58

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
             Y        D G      H +    +   +   L  ALP     +    + Y     +
Sbjct: 59  FLY--------DVG-----GHVIFSHYKYFDDC--LDEALPKEDDWYTHQRISYVRCQGQ 103

Query: 181 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR 216
                   ++  L +    +    +           
Sbjct: 104 WVPYPFQNNISMLPKEEQVKCIDGMIDAALEARVAN 139

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
            IL++G G +G  +    A +G +V ++++ D   G S  +       + +         
Sbjct: 5   KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVH--------V 56

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
           YG    +FH   + + V       +  +P +           + + + ++ +        
Sbjct: 57  YGP--HIFHT--DNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTI-----NQF 107

Query: 193 LSRYYSAQESAELF 206
            S+  S  E+  L 
Sbjct: 108 FSKTCSPDEARALI 121

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRST 114
           D+LV+G G  G   A +A+  G RV L++ E   +G +   T
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLD-ERAEAGGTLLDT 170

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 68  NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE 125
             N +D+L+ G G  G  +A     +G RV +VE+        + +  L   G+R +E
Sbjct: 3   TDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAI-NGADLLKPAGIRVVE 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	100.0
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	100.0
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	100.0
3dme_A	369	Conserved exported protein; structural genomics, P	100.0
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	100.0
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	100.0
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.98
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.97
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.97
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.97
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.97
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.97
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.96
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.96
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.96
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.96
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.95
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.95
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.94
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.78
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.76
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.75
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.74
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.71
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.69
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.68
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.67
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.67
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.67
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.63
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.63
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.61
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.6
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.6
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.6
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.6
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.6
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.6
3atr_A	453	Conserved archaeal protein; saturating double bond	99.59
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.58
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.56
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.55
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.55
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.53
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.52
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.51
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.5
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.49
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.48
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.46
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.45
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.44
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.44
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.42
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.39
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.38
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.37
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.37
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.36
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.35
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.35
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.33
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.32
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.32
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.31
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	99.3
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.29
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.29
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.28
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.26
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.25
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.24
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.24
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.23
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.22
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.21
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.19
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.18
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.18
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.17
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.16
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.16
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.14
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.12
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.12
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.11
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.1
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.1
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.09
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.09
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.09
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.09
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.08
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.08
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.08
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.06
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.06
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.04
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.03
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.03
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.02
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.02
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.01
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.98
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.98
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.97
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.97
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.97
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.97
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.93
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.93
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.89
4dna_A	463	Probable glutathione reductase; structural genomic	98.89
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.89
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.89
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.88
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.87
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.87
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.86
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.84
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.84
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.84
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.83
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.82
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.81
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.8
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.8
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.8
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.79
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.76
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.75
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.74
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.73
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.72
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.7
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.69
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.68
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.67
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.67
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.66
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.66
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.64
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.64
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.63
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.63
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.61
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.6
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.57
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.57
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.56
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.55
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.52
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.52
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.52
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.51
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.49
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.49
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.49
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.49
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.48
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.46
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.44
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.43
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.39
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.35
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.34
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.34
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.34
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.33
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.31
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.3
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.3
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.3
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.29
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.28
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.28
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.27
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.27
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.27
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.26
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.25
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.25
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.24
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.23
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.21
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.18
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.17
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.15
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.14
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.14
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.13
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.13
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.08
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.08
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.06
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.05
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.04
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.04
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.04
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.04
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.04
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.03
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.03
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.03
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.03
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.02
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.98
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.96
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.95
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.93
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.92
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.92
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.92
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.92
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.92
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.91
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.89
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.89
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.88
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.88
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.88
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.86
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.85
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.85
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.84
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.82
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.82
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.81
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.8
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.79
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.78
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.77
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.77
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.76
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.74
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.73
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.73
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.72
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.69
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.68
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.66
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.64
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.63
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.62
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.61
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.6
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.56
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.54
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.54
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.52
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.52
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.5
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.48
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.47
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.42
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.38
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.38
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.36
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.34
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.32
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.25
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.25
2pq4_B	35	Periplasmic nitrate reductase precursor; NAPD/NAPA	97.23
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.21
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.2
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.02
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.97
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.81
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.58
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.34
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.11
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.97
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.95
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.94
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.83
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.61
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.56
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.5
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.39
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.29
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.2
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.16
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.07
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.89
4fk1_A	304	Putative thioredoxin reductase; structural genomic	94.88
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.85
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.78
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.64
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.51
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.5
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.48
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.41
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.37
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.32
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.25
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.25
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.23
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.13
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.96
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.91
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.89
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.86
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.77
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.76
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.74
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.63
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.61
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.57
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.56
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.53
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.51
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.4
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	93.39
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.35
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.33
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.33
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.3
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.3
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.29
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.19
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	93.17
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.15
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.15
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.13
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	93.09
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	93.09
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.06
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	93.05
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.99
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	92.96
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.91
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	92.91
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	92.84
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	92.84
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	92.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.77
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.76
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.72
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.67
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.67
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.62
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.59
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.54
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.48
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.45
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.4
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.38
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.38
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.33
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.32
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.24
1fec_A	490	Trypanothione reductase; redox-active center, oxid	92.24
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.22
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.17
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.16
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.14
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.13
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	92.11
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.11
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.06
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.91
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.84
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	91.83
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.82
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	91.81
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.81
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.8
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	91.79
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	91.79
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.76
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.74
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.73
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.71
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.69
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	91.66
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	91.64
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	91.64
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.62
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	91.61
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.6
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.55
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.48
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.47
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.44
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.39
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.38
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.32
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	91.27
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.26
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.25
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.18
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.16
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.06
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.96
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.93
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	90.9
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	90.88
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	90.8
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.78
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	90.77
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.73
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	90.71
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	90.69
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.69
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	90.63
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	90.62
4dna_A	463	Probable glutathione reductase; structural genomic	90.59
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	90.56
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.54
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	90.52
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	90.45
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	90.43
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.37
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.37
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.36
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	90.36
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	90.36
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.33
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.3
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	90.29
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.28
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	90.25
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	90.25
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.22
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	90.17
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	90.14
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	90.09
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	90.08
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.05
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.03
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.03
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	90.02
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	90.01
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	89.98
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	89.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.95
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	89.93
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	89.81
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	89.8
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	89.8
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	89.78
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	89.69
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	89.69
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	89.68
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	89.66
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	89.63
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	89.6
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	89.57
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	89.52
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	89.46
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	89.34
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	89.31
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	89.31
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	89.3
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	89.26
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	89.25
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.25
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	89.14
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	89.14
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	89.09
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.93
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	88.86
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.78
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.73
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	88.68
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	88.64
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	88.62
4aay_B	175	AROB; oxidoreductase, rieske, iron sulfur, molybdo	88.42
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.4
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	88.37
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.32
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	88.3
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	88.28
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	88.26
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	88.24
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	88.15
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	88.11
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	88.04
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	88.02
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	87.92
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	87.71
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	87.58
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.47
3l07_A	285	Bifunctional protein fold; structural genomics, ID	87.43
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	87.3
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	87.13
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	87.1

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=100.00  E-value=4.2e-44  Score=358.07  Aligned_cols=369  Identities=36%  Similarity=0.550  Sum_probs=263.3

Q ss_pred             ChHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcc
Q 013476           55 SRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYG  134 (442)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~  134 (442)
                      .+......+.    +.++||||||||++|+++|+.|+++|++|+||||+++++|+|+++.++++++.+++...       
T Consensus         6 ~r~~~~~~m~----~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~~ss~lihgG~ryl~~~-------   74 (561)
T 3da1_A            6 KRDKCIGEMS----EKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQF-------   74 (561)
T ss_dssp             CHHHHHHHHT----TSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGGSSCCEECC---------------
T ss_pred             HHHHHHHhcc----CCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCcccCCcCccccchHHHHhc-------
Confidence            3444444444    56799999999999999999999999999999999999999999999999998876532       


Q ss_pred             hHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchh--hHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccc
Q 013476          135 QLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWF--EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMK  212 (442)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  212 (442)
                      ....+.+.+.+........+++........+.....  .......+..+++.+.........++++.++....+|.+   
T Consensus        75 ~~~l~~e~~~e~~~l~~~ap~l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l---  151 (561)
T 3da1_A           75 EIKLVAEVGKERAIVYENAPHVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLL---  151 (561)
T ss_dssp             -------CHHHHHHHHHHCTTTCEEEEEEEEECC---------------------------CEEECHHHHHHHCTTS---
T ss_pred             CHHHHHHHHHHHHHHHHhCchhccccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccC---
Confidence            123344445555555566666665544433332221  111122334455555432233457889999999999988   


Q ss_pred             cccCCceeEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEcc
Q 013476          213 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA  292 (442)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAt  292 (442)
                       ......+++.+.++++++..++..|.+.++++|++|+++++|++|..++ + +|++|++.+..+|+...++||.||+|+
T Consensus       152 -~~~~~~gg~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~-g-~v~gV~~~d~~tg~~~~i~A~~VV~Aa  228 (561)
T 3da1_A          152 -RKENLKGGGIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQ-G-KVVGVVAKDRLTDTTHTIYAKKVVNAA  228 (561)
T ss_dssp             -CCTTCCEEEEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEET-T-EEEEEEEEETTTCCEEEEEEEEEEECC
T ss_pred             -ChhhceeEEEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-C-eEEEEEEEEcCCCceEEEECCEEEECC
Confidence             5555677777778899999999999999999999999999999999987 5 899999987556766789999999999


Q ss_pred             CCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCC-CCCCCCCCCH
Q 013476          293 GPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDT-VITLLPEPHE  371 (442)
Q Consensus       293 G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~-~~~~~~~~~~  371 (442)
                      |.|+..|++++|.....++.|.+|++++++....+....++++...+++.+|++|+.|.+++|+++++. ....++.+++
T Consensus       229 G~~s~~l~~~~g~~~~~~v~p~kG~~lvl~~~~~~~~~~~~~~~~~dgr~v~~iP~~g~~~iGtT~~~~~~~~~~~~~t~  308 (561)
T 3da1_A          229 GPWVDTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPREGKTYIGTTDTFYDKDIASPRMTV  308 (561)
T ss_dssp             GGGHHHHHHTTTCCCSSEEEEEEEEEEEEEGGGSCCSSEEEECCSSSCCCEEEEEETTEEEECCCCEEECSCTTCCCCCH
T ss_pred             CcchHHHHHhcCCCCCceEEeccEEEEEECCccCCCceEEEeccCCCCcEEEEEecCCCEEEcCCCCccCCCcCCCCCCH
Confidence            999999999998765567999999999987644444444555422578889999998899999998653 2345788999


Q ss_pred             HHHHHHHHHhhhhcCCCCC--CCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEeccccccccC
Q 013476          372 DEIQFILDAISDYLNVKVR--RTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR  442 (442)
Q Consensus       372 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~~~~~~  442 (442)
                      +.++.+++.+.+++ |.+.  ..++...|+|+||++.|+ .+++.+.+|+++|..+++|+|+++||||||||.
T Consensus       309 ~~i~~ll~~~~~~~-P~l~~~~~~v~~~~aGlRPl~~~~-~~~~~~~sR~~~i~~~~~gli~i~Ggk~Tt~r~  379 (561)
T 3da1_A          309 EDRDYILAAANYMF-PSLRLTADDVESSWAGLRPLIHEE-GKKASEISRKDEIFFSDSGLISIAGGKLTGYRK  379 (561)
T ss_dssp             HHHHHHHHHHHHHC-TTCCCCTTTEEEEEEEEEEEEEC------------CCEEECSSCCEEECCCCSTTHHH
T ss_pred             HHHHHHHHHHHHhC-CCCCCChhhEEEEeEEeccccCCC-CCCccccccceEEEecCCCeEEEeCChhhhHHH
Confidence            99999999999999 7765  788999999999999885 345677889999888889999999999999983

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=100.00  E-value=6.7e-42  Score=342.85  Aligned_cols=357  Identities=35%  Similarity=0.587  Sum_probs=264.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||+|||||++|+++|+.|+++|++|+||||+++++++|++++++++++.++....       ......+.+.+...+
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~GtS~~s~gli~~g~ryl~~~-------~~~l~~~~~~e~~~l  103 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGTSSRSTKLVHGGIRYLKTF-------DVEVVADTVGERAVV  103 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCSEECCCGGGGGGT-------CHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccccccccccchhhcc-------ChHHHHHHHHHHHHH
Confidence            5699999999999999999999999999999999999999999999999988775432       222334444444333


Q ss_pred             HHhCCcccccCCCcccCCch-----hhHHHHHHHHHHHHHHhc--cCCCCcceecCHhhHHhhCCccccccccCCceeEE
Q 013476          150 IRNAPHLSNALPCMTPCFDW-----FEVVYYWVGLKMYDLVAG--RHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAV  222 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  222 (442)
                      ....+++......+.+....     +.......+...++++..  ..+.. .++++.++....+|.+    ..+...+++
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~e~~~~~P~l----~~~~~~gg~  178 (571)
T 2rgh_A          104 QGIAPHIPKPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYE-NYTLTPEEVLEREPFL----KKEGLKGAG  178 (571)
T ss_dssp             HHHCTTSSEECCEEEEEESSSSSCSCCHHHHHHHHHHHHHHHTCSSSTTC-CEEECHHHHHHHCTTS----CCTTEEEEE
T ss_pred             HHhCcccccccCceEEeecccccccccHHHHHHHHHHHHHHhhhhccCCC-cEEECHHHHHHhCcCC----chhhceEEE
Confidence            34444443322222221110     222223334456666642  23433 7889999999999988    555567777


Q ss_pred             EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476          223 VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       223 ~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      ++.++++++..++..+.+.++++|++|+++++|++|..++ + +|++|++++..+++...++||.||+|||.|+..++++
T Consensus       179 ~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~-~-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~  256 (571)
T 2rgh_A          179 VYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG-D-QIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNL  256 (571)
T ss_dssp             EECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-T-EEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTT
T ss_pred             EecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeC-C-EEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHh
Confidence            7778899999999999999999999999999999999887 5 8999998764356656899999999999999999998


Q ss_pred             hCCCCC-CcccCCCeeEEEeCCCCCCCCceEEeeec-CCCcEEEEEecCCcEEEccCCCCCC-CCCCCCCCHHHHHHHHH
Q 013476          303 ADQNVQ-PMICPSSGVHIVLPDYYSPEGMGLIVPKT-KDGRVVFMLPWLGRTVAGTTDSDTV-ITLLPEPHEDEIQFILD  379 (442)
Q Consensus       303 ~g~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~  379 (442)
                      ++.... .++.|++|++++++....+.....+++.. .+++.+|++|+.+.+++|++++... ...++.++++.++.+++
T Consensus       257 ~g~~~~~~~i~p~rG~~l~~~~~~~~~~~~~~~~~~~~dgr~~~~~P~~~~~~iG~t~~~~~~~~~~~~~~~~~~~~ll~  336 (571)
T 2rgh_A          257 NFTRPVSPKMRPTKGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLLD  336 (571)
T ss_dssp             CCSSCCCCCBCCEEEEEEEEEGGGSCCSSCEEEECSSSSSCEEEEEEETTEEEECCCCEECCSCSSSCCCCHHHHHHHHH
T ss_pred             hccCccCceeeccceEEEEeccccCCCCcEEEEeccCCCCcEEEEEEcCCeEEEcCCCcCCCCCcCCCCCCHHHHHHHHH
Confidence            876543 56899999999987533222334444421 5778899999999999999876432 33467788999999999


Q ss_pred             HhhhhcCCC--CCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEeccccccccC
Q 013476          380 AISDYLNVK--VRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRR  442 (442)
Q Consensus       380 ~~~~~~~~~--l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~~~~~~  442 (442)
                      .+.+++ |.  +...++.+.|+|+||+++|+. .++...+|+++|..+.+|+|+++||||||||.
T Consensus       337 ~~~~~~-P~~~l~~~~v~~~waG~Rp~~~d~~-~~~~~~~r~~~i~~~~~gl~~v~GGk~Tt~r~  399 (571)
T 2rgh_A          337 VINHRY-PEANITLADIEASWAGLRPLLIGNS-GSPSTISRGSSLEREPDGLLTLSGGKITDYRK  399 (571)
T ss_dssp             HHHHHS-TTTCCCGGGCCEEEEEEECCBCC------------EEEEECTTSCEEEEECCGGGHHH
T ss_pred             HHHHhc-CccCCchhceeEEeEEeeeccCCCC-CCcccCCCCcEEecCCCCeEEEeCcchhhHHH
Confidence            999999 65  467789999999999999853 23456789999987789999999999999983

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=100.00  E-value=3.5e-38  Score=312.40  Aligned_cols=347  Identities=31%  Similarity=0.480  Sum_probs=254.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||+|||||++|+++|+.|+++|++|+||||.++++++|++++++++++.++....       ...+..+.+.++..+
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gtS~~s~gli~~g~~~~~~~-------~~~l~~~~~~~~~~l   74 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHY-------EFRLVSEALAEREVL   74 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGT-------CHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCccccccccccccchhhhhc-------hHHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999989999999999999888765431       223444445554444


Q ss_pred             HHhCCcccccCCCcccCC-chhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhC--CccccccccCCceeEEEeeC
Q 013476          150 IRNAPHLSNALPCMTPCF-DWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELF--PTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~  226 (442)
                      ....+++........+.. ..+.......+...++.+    +  ..++++.++....+  |.+    .. ...+++.+.+
T Consensus        75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~l~~~~~~~~~~~P~l----~~-~~~~~~~~~~  143 (501)
T 2qcu_A           75 LKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHL----G--KRTSLPGSTGLRFGANSVL----KP-EIKRGFEYSD  143 (501)
T ss_dssp             HHHCTTTEEEEEEEEECCTTTSCHHHHHHHHHHHHSS----S--CCSSSCCCEEEECCTTSSB----CT-TCCEEEEEEE
T ss_pred             HHhCCccccccCeEeccCcccchHHHHHHHHHHHHhc----C--CcEEECHHHHHHhhcCCCc----ch-hceEEEEeeC
Confidence            445555544332222221 111111222222333322    2  25667766666666  766    32 3556667778


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-hCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQ  305 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~g~  305 (442)
                      +++++..++..|.+.++++|++++++++|++|..++   ++++|++.+..+|+...++||.||+|+|.|+..+.+. ++.
T Consensus       144 g~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~---~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~  220 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKGGEVLTRTRATSARREN---GLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHL  220 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET---TEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCC
T ss_pred             CEEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC---CEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccC
Confidence            899999999999999999999999999999999875   5677887653355556899999999999999988885 554


Q ss_pred             CCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEEccCCCCCC-CCCCCCCCHHHHHHHHHHhhh
Q 013476          306 NVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISD  383 (442)
Q Consensus       306 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  383 (442)
                      ....++.|.+|++++++... +....++++ ..+++.+|++|+. +.+++|.++.... .+.++.++++.++.+++.+.+
T Consensus       221 ~~~~~i~p~rG~~~~~~~~~-~~~~~~~~~-~~dg~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (501)
T 2qcu_A          221 PSPYGIRLIKGSHIVVPRVH-TQKQAYILQ-NEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNT  298 (501)
T ss_dssp             CCSSCBCCEEEEEEEEECSS-SCSCEEEEE-CTTSCEEEEEEETTTEEEEECCCEECCSCGGGCCCCHHHHHHHHHHHHH
T ss_pred             CcccccccceeEEEEECCCC-CCceEEEee-cCCCCEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCCHHHHHHHHHHHHH
Confidence            32346999999999887433 223344454 5678889999986 6788998875432 234677889999999999999


Q ss_pred             hcCC-CCCCCCeeeeeeeccccccCCCCCCCCCcccceeeE--ec--CCCeEEEecccccccc
Q 013476          384 YLNV-KVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVC--ED--FPGLVTITGGKWTTYR  441 (442)
Q Consensus       384 ~~~~-~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~--~~--~~~~~~~~gg~~~~~~  441 (442)
                      ++ | .+...++.+.|+|+||+++|+.. .....+++++|.  ..  .+|++.++|||+||||
T Consensus       299 ~~-p~~l~~~~v~~~~aG~Rp~~~d~~p-~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~~  359 (501)
T 2qcu_A          299 HF-KKQLSRDDIVWTYSGVRPLCDDESD-SPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYR  359 (501)
T ss_dssp             HB-SSCCCGGGCCEEEEEEECCBCCCCS-SGGGSCCCCEEEEEEETTEEEEEEEECCCGGGHH
T ss_pred             hc-CCCCCcccEEEEEEEEeeecCCCCC-ccccCcCceEEEecccCCCCCeEEEeCccccchH
Confidence            99 7 78888899999999999999642 234556888887  32  3789999999999987

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=100.00  E-value=1.3e-32  Score=262.79  Aligned_cols=336  Identities=20%  Similarity=0.205  Sum_probs=226.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhh-hccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAV-FNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  147 (442)
                      .++||+|||||++|+++|++|+++|++|+||||+. ++.++|+++.|.++.+..+..... ..+.....+.    +.+..
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~   78 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHL----LYEYC   78 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHH----HHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCccCcCCccccccCccCCCCCHhHHHHHHHHHH----HHHHH
Confidence            35899999999999999999999999999999994 888999999988877654322100 0000011111    11111


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      ......  + .....+............   ....+.. ...+++..++++.++....+|.+      ....+.+.+..+
T Consensus        79 ~~~~~~--~-~~~g~~~~~~~~~~~~~~---~~~~~~~-~~~g~~~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~  145 (369)
T 3dme_A           79 AARGVP--H-QRLGKLIVATSDAEASQL---DSIARRA-GANGVDDLQHIDGAAARRLEPAL------HCTAALVSPSTG  145 (369)
T ss_dssp             HHHTCC--E-ECCCEEEEECSHHHHTTH---HHHHHHH-HHTTCCCCEEEEHHHHHHHCTTC------CCSEEEEETTCE
T ss_pred             HHcCCC--c-ccCCEEEEecCHHHHHHH---HHHHHHH-HHcCCCceeecCHHHHHHhCCCc------eeeeeeECCCCE
Confidence            111111  1 111111111111110000   1222222 25566547888889888888876      233444556678


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh-CCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA-DQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~-g~~  306 (442)
                      .+++..++..|.+.++++|++|+++++|++|..++++ .+ .|.+   .+|+...+.||.||+|+|.|+..|++++ |++
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~-~v~~---~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEG-GF-ELDF---GGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTS-SE-EEEE---CTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             EECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCc-eE-EEEE---CCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            8999999999999999999999999999999998754 23 3444   3454468999999999999999999998 875


Q ss_pred             C--CCcccCCCeeEEEeCCCCCCCCceEEeee-cCCCcEEEE-EecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhh
Q 013476          307 V--QPMICPSSGVHIVLPDYYSPEGMGLIVPK-TKDGRVVFM-LPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAIS  382 (442)
Q Consensus       307 ~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (442)
                      .  ..++.|.+|+++.++.... ... .++.. ..++..+++ .+.+|++++|++.+.. ...+..++++.++.+++.+.
T Consensus       221 ~~~~~~i~p~rG~~~~~~~~~~-~~~-~~~~~p~~~~~~~~~~~~~~g~~~iG~t~e~~-~~~~~~~~~~~~~~l~~~~~  297 (369)
T 3dme_A          221 RDSIPPEYLCKGSYFTLAGRAP-FSR-LIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWI-ATEDYTLDPRRADVFYAAVR  297 (369)
T ss_dssp             GGGSCCCEEEEEEEEECSSSCS-CSS-EEEECTTCSSCCCCEEECTTSCEEECCCCEEE-SSCCCCCCGGGGGGHHHHHH
T ss_pred             ccccceeeecceEEEEECCCCc-cCc-eeecCCCCCCceEEEeCccCCcEEECCCcccc-cccccccCHHHHHHHHHHHH
Confidence            2  2468999999988876422 222 23321 223322334 4567899999987642 13566788888999999999


Q ss_pred             hhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceee-Ee---cCCCeEEEeccc
Q 013476          383 DYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CE---DFPGLVTITGGK  436 (442)
Q Consensus       383 ~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i-~~---~~~~~~~~~gg~  436 (442)
                      +++ |.+...++.+.|+|+||+++|.     +...++|+| ..   ..+++|+++|..
T Consensus       298 ~~~-P~l~~~~v~~~w~G~Rp~~~~~-----~~~d~~p~i~g~~~~~~~~l~~~~G~~  349 (369)
T 3dme_A          298 SYW-PALPDGALAPGYTGIRPKISGP-----HEPAADFAIAGPASHGVAGLVNLYGIE  349 (369)
T ss_dssp             TTC-TTCCTTCCEEEEEEEEEESSCT-----TSCCCCCEEECHHHHCCTTEEEEECCC
T ss_pred             HHC-CCCChhhceecceeccccccCC-----CCCcCCeEEecccccCCCCEEEEeCCC
Confidence            999 8899899999999999998642     123378888 33   358999999874

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.1e-31  Score=257.69  Aligned_cols=328  Identities=16%  Similarity=0.183  Sum_probs=224.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      .++||+|||||++|+++|++|+++|++|+||||..++.++|+++.|.++........         ..+..+....+..+
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~~~gas~~~~g~~~~~~~~~~~---------~~l~~~~~~~~~~l   74 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEAN---------VRVMKRSVELWKKY   74 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHH---------HHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccccCeeeecCCChHH---------HHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999988888888888887654321110         11111111111111


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeE-EEeeCcc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA-VVYYDGQ  228 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~  228 (442)
                      .............+............   ....+.+ +..+++ .++++.++....+|.+    ......++ +.+..+.
T Consensus        75 ~~~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~g~~-~~~l~~~~~~~~~p~~----~~~~~~~~~~~~~~~~  145 (382)
T 1y56_B           75 SEEYGFSFKQTGYLFLLYDDEEVKTF---KRNIEIQ-NKFGVP-TKLITPEEAKEIVPLL----DISEVIAASWNPTDGK  145 (382)
T ss_dssp             HHHHTCCEECCCEEEEECSHHHHHHH---HHHHHHH-HHTTCC-CEEECHHHHHHSSTTC----CCTTCCEEEEETTCCE
T ss_pred             HHHhCCCeeccceEEEEeCHHHHHHH---HHHHHHH-HhcCCC-cEEeCHHHHHHhCCCC----CcccceEEEEcCCCee
Confidence            11100011111111111111111111   1222222 255665 7889999988888877    43344444 4466889


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ  308 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~  308 (442)
                      +++..++..|.+.+++.|++|+++++|++|..++ + ++++|++.   +|   .++||.||+|+|.|+..|.+.+|....
T Consensus       146 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~-~v~gv~~~---~g---~i~a~~VV~A~G~~s~~l~~~~g~~~~  217 (382)
T 1y56_B          146 ADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIEN-N-EIKGVKTN---KG---IIKTGIVVNATNAWANLINAMAGIKTK  217 (382)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-S-BEEEEEET---TE---EEECSEEEECCGGGHHHHHHHHTCCSC
T ss_pred             ECHHHHHHHHHHHHHHCCCEEECCceEEEEEEEC-C-EEEEEEEC---Cc---EEECCEEEECcchhHHHHHHHcCCCcC
Confidence            9999999999999999999999999999999887 4 77777652   22   799999999999999999998886521


Q ss_pred             CcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEcc-CCCCCCCCCCCCCCHHHHHHHHHHhhhhcCC
Q 013476          309 PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGT-TDSDTVITLLPEPHEDEIQFILDAISDYLNV  387 (442)
Q Consensus       309 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (442)
                      .++.|.+|+++.++........+.++.  .+...+|++|..+++++|. .... ....+..++++..+.+++.+.+++ |
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~y~~p~~~g~~iG~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-p  293 (382)
T 1y56_B          218 IPIEPYKHQAVITQPIKRGTINPMVIS--FKYGHAYLTQTFHGGIIGGIGYEI-GPTYDLTPTYEFLREVSYYFTKII-P  293 (382)
T ss_dssp             CCCEEEEEEEEEECCCSTTSSCSEEEE--STTTTEEEECCSSSCCEEECSCCB-SSCCCCCCCHHHHHHHHHHHHHHC-G
T ss_pred             cCCCeeEeEEEEEccCCcccCCCeEEe--cCCCeEEEEEeCCeEEEecCCCCC-CCCCCCCCCHHHHHHHHHHHHHhC-C
Confidence            468899999888764322212134443  2213588999765588884 3222 123356678888999999999999 8


Q ss_pred             CCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEecccc
Q 013476          388 KVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKW  437 (442)
Q Consensus       388 ~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~  437 (442)
                      .+...++.+.|+|+||+|+|          +.|+|...+  ||+++++|-.+
T Consensus       294 ~l~~~~~~~~~~g~r~~t~d----------~~p~ig~~~~~~~~~~~~G~~g  335 (382)
T 1y56_B          294 ALKNLLILRTWAGYYAKTPD----------SNPAIGRIEELNDYYIAAGFSG  335 (382)
T ss_dssp             GGGGSEEEEEEEEEEEECTT----------SCCEEEEESSSBTEEEEECCTT
T ss_pred             CcCCCCceEEEEeccccCCC----------CCcEeccCCCCCCEEEEEecCc
Confidence            88888899999999999999          689998764  89998887543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=100.00  E-value=7.3e-32  Score=258.75  Aligned_cols=320  Identities=19%  Similarity=0.211  Sum_probs=221.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +.++||||||||++|+++|++|+ +|++|+||||.. +++++|+++.|+++......             ...+......
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g~~as~~~~g~~~~~~~~~-------------~~~~l~~~~~   72 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTP-------------QVRALTAASR   72 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTTSSGGGSCCCEECSSSSCH-------------HHHHHHHHHH
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCccccccccccceeecccCCH-------------HHHHHHHHHH
Confidence            45699999999999999999999 699999999995 77789999998886543210             0111111111


Q ss_pred             HHHHhCC-cc-----cccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeE
Q 013476          148 QVIRNAP-HL-----SNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA  221 (442)
Q Consensus       148 ~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  221 (442)
                      ..+.... .+     ......+...... .....   ....+.+. ..+++ .++++.+++...+|.+    ......++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~~~~---~~~~~~~~-~~g~~-~~~l~~~~~~~~~p~l----~~~~~~~~  142 (381)
T 3nyc_A           73 AFFDNPPAGFCEHPLLSPRPEMVVDFSD-DPEEL---RRQYESGK-ALVPQ-MRLLDAEQACSIVPVL----RRDKVFGA  142 (381)
T ss_dssp             HHHHSCCTTSCSSCSEEECCEEEECSSC-CHHHH---HHHHHHHH-HHCTT-CEEECHHHHHHHSTTB----CGGGCCCE
T ss_pred             HHHHHhhhhhCCcccccccceEEEechH-HHHHH---HHHHHHHH-HcCCC-cEEeCHHHHHHhCCCc----ccccceEE
Confidence            2222111 10     1111111111111 11111   12222222 45665 7889999999999987    44434444


Q ss_pred             E-EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476          222 V-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR  300 (442)
Q Consensus       222 ~-~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~  300 (442)
                      + .+..+.++|..++..|.+.++++|++|+++++|++|..+++  + ++|++   .  . .++.||.||+|+|.|+..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~--~-~~V~t---~--~-g~i~a~~VV~A~G~~s~~l~  213 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG--A-WEVRC---D--A-GSYRAAVLVNAAGAWCDAIA  213 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETT--E-EEEEC---S--S-EEEEESEEEECCGGGHHHHH
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC--e-EEEEe---C--C-CEEEcCEEEECCChhHHHHH
Confidence            4 45678899999999999999999999999999999998874  4 33433   1  2 37999999999999999999


Q ss_pred             hhhCCCCCCcccCCCeeEEEeCCCCC--CCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHH
Q 013476          301 KLADQNVQPMICPSSGVHIVLPDYYS--PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFIL  378 (442)
Q Consensus       301 ~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~  378 (442)
                      +.+|+. ..++.|.+|+++.++....  ....+.+..  .+ ..+|++|..|++++|++.+....+.+..+++..++.++
T Consensus       214 ~~~g~~-~~~~~p~rg~~~~~~~~~~~~~~~~p~~~~--~~-~~~y~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~  289 (381)
T 3nyc_A          214 GLAGVR-PLGLQPKRRSAFIFAPPPGIDCHDWPMLVS--LD-ESFYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGM  289 (381)
T ss_dssp             HHHTCC-CCCCEEEEEEEEEECCCTTCCCTTCCEEEE--TT-SSCEEEEETTEEEEECCCCEECCSSCCCCCHHHHHHHH
T ss_pred             HHhCCC-CCceeeeEEEEEEECCCcCCCcCccceEEe--CC-CCEEEEeCCCcEEEeCCcCCCCCcccCCCChHHHHHHH
Confidence            999876 2478999999888865431  122233332  22 24788998888999988764323345667777788888


Q ss_pred             HHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEecccc
Q 013476          379 DAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKW  437 (442)
Q Consensus       379 ~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~  437 (442)
                      +.+..+  |.+...++.+.|+|+||+|+|          +.|+|..++  |+++.++|-.+
T Consensus       290 ~~~~~~--~~l~~~~~~~~w~G~r~~t~D----------~~p~ig~~~~~~~l~~a~G~~g  338 (381)
T 3nyc_A          290 YLIEEA--TTLTIRRPEHTWAGLRSFVAD----------GDLVAGYAANAEGFFWVAAQGG  338 (381)
T ss_dssp             HHHHHH--BSCCCCCCSEEEEEEEEECTT----------SCCEEEECTTSTTEEEEECCTT
T ss_pred             HHHHhc--CCCcccceeeeeEEccccCCC----------CCceecCCCCCCCeEEEEcCCC
Confidence            888764  577778899999999999999          689999864  89999988543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.98  E-value=9.1e-30  Score=246.22  Aligned_cols=325  Identities=18%  Similarity=0.208  Sum_probs=223.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH-CC-CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAAT-RG-LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~-~G-~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      .++||+|||||++|+++|++|++ +| ++|+||||..+++++|+++.|.++.......         ...+..+.+..+.
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~~gas~~~~g~~~~~~~~~~---------~~~l~~~~~~~~~   90 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDE---------SAGIYEKSLKLWE   90 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTTCSGGGTSCCCBCCCCSSHH---------HHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCcccccCceeeecCCCHH---------HHHHHHHHHHHHH
Confidence            45899999999999999999999 99 9999999999888899999888876543211         1111111122221


Q ss_pred             HHHHhCC--cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCcccccccc-----CCcee
Q 013476          148 QVIRNAP--HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKD-----RSLKG  220 (442)
Q Consensus       148 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~  220 (442)
                      .......  ........+............   .+..+++. ..+.+ .++++.++....+|.+    ..     ....+
T Consensus        91 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~~-~~g~~-~~~l~~~~~~~~~p~~----~~~~~~~~~~~~  161 (405)
T 2gag_B           91 QLPEDLEYDFLFSQRGVLNLAHTLGDVRES---VRRVEANK-LNGVD-AEWLDPSQVKEACPII----NTSDDIRYPVMG  161 (405)
T ss_dssp             HHHHHTTCCCCCBCCCEEEEECSHHHHHHH---HHHHHHHH-TBTCC-CEEECHHHHHHHCTTS----CCSTTSSSCCCE
T ss_pred             HHHHHhCCCcCEecccEEEEEcCHHHHHHH---HHHHHHHH-hcCCC-ceEeCHHHHHhhCCCC----ccccccccccee
Confidence            1111111  000111111111111111111   12233332 56665 7889999988888876    33     23334


Q ss_pred             E-EEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          221 A-VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       221 ~-~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      + +.+..+.++|..++..|.+.+++.|++++++++|++|..++ + ++++|++   .+|   .+.||.||+|+|.++..+
T Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~-~~~~v~~---~~g---~~~a~~vV~a~G~~s~~l  233 (405)
T 2gag_B          162 ATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDG-E-KVTGVKT---TRG---TIHAGKVALAGAGHSSVL  233 (405)
T ss_dssp             EEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-S-BEEEEEE---TTC---CEEEEEEEECCGGGHHHH
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC-C-EEEEEEe---CCc---eEECCEEEECCchhHHHH
Confidence            4 44568899999999999999999999999999999999876 4 7777765   233   689999999999999999


Q ss_pred             hhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHH
Q 013476          300 RKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFIL  378 (442)
Q Consensus       300 ~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~  378 (442)
                      ++.+|+..  ++.+.+++++..+... +.....++.  .+ ..+|++|. ++.+++|.+.++. ...+..++++..+.++
T Consensus       234 ~~~~g~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~y~~p~~~g~~~ig~~~~~~-~~~~~~~~~~~~~~l~  306 (405)
T 2gag_B          234 AEMAGFEL--PIQSHPLQALVSELFE-PVHPTVVMS--NH-IHVYVSQAHKGELVMGAGIDSY-NGYGQRGAFHVIQEQM  306 (405)
T ss_dssp             HHHHTCCC--CEEEEEEEEEEEEEBC-SCCCSEEEE--TT-TTEEEEECTTSEEEEEEEECSS-CCCSSCCCTHHHHHHH
T ss_pred             HHHcCCCC--CccccceeEEEecCCc-cccCceEEe--CC-CcEEEEEcCCCcEEEEeccCCC-CccccCCCHHHHHHHH
Confidence            99888764  6788888877664321 111122222  22 35788885 5678898876532 2234456677889999


Q ss_pred             HHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC-CCeEEEeccccc
Q 013476          379 DAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF-PGLVTITGGKWT  438 (442)
Q Consensus       379 ~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~-~~~~~~~gg~~~  438 (442)
                      +.+.+++ |.+...++.+.|+|+||+|+|          +.|+|...+ +|+++++|..+.
T Consensus       307 ~~~~~~~-p~l~~~~~~~~w~g~~~~t~d----------~~p~ig~~~~~~l~~~~G~~g~  356 (405)
T 2gag_B          307 AAAVELF-PIFARAHVLRTWGGIVDTTMD----------ASPIISKTPIQNLYVNCGWGTG  356 (405)
T ss_dssp             HHHHHHC-GGGGGCEECEEEEEEEEEETT----------SCCEEEECSSBTEEEEECCGGG
T ss_pred             HHHHHhC-CccccCCcceEEeeccccCCC----------CCCEecccCCCCEEEEecCCCc
Confidence            9999999 888878889999999999999          689998874 899999886544

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.97  E-value=9.1e-30  Score=244.89  Aligned_cols=324  Identities=14%  Similarity=0.145  Sum_probs=214.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC--CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +++||+|||||++|+++|++|+++|++|+|||+...++  ++|..+.++++.....        .........+....+.
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~   73 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGE--------GREYVPLALRSQELWY   73 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTT--------CGGGHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcC--------CchHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999998776  7777777666542210        0011111222222222


Q ss_pred             HHHHhCC-cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-ee
Q 013476          148 QVIRNAP-HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YY  225 (442)
Q Consensus       148 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~  225 (442)
                      .+..... ........+...... .....   .+..+++ +..+++ .++++.++....+|.+    ......++++ +.
T Consensus        74 ~l~~~~~~~~~~~~g~~~~~~~~-~~~~~---~~~~~~~-~~~g~~-~~~l~~~~~~~~~p~~----~~~~~~~~~~~~~  143 (389)
T 2gf3_A           74 ELEKETHHKIFTKTGVLVFGPKG-ESAFV---AETMEAA-KEHSLT-VDLLEGDEINKRWPGI----TVPENYNAIFEPN  143 (389)
T ss_dssp             HHHHHCSSCCEECCCEEEEEETT-CCHHH---HHHHHHH-HHTTCC-CEEEETHHHHHHSTTC----CCCTTEEEEEETT
T ss_pred             HHHHHhCCcceeecceEEEcCCC-chHHH---HHHHHHH-HHcCCC-cEEcCHHHHHHhCCCc----ccCCCceEEEeCC
Confidence            2211111 111111111100000 10111   1222333 245665 6788888888888876    4344444444 55


Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      .+.++|..++..|.+.+++.|++++++++|++|..++++  +   .+.. .+   ..++||.||+|+|.++..|++.++.
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~---~v~~-~~---g~~~a~~vV~A~G~~~~~l~~~~g~  214 (389)
T 2gf3_A          144 SGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--V---KIET-AN---GSYTADKLIVSMGAWNSKLLSKLNL  214 (389)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--E---EEEE-TT---EEEEEEEEEECCGGGHHHHGGGGTE
T ss_pred             CcEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--E---EEEe-CC---CEEEeCEEEEecCccHHHHhhhhcc
Confidence            788999999999999999999999999999999987743  2   2232 12   3799999999999999999988875


Q ss_pred             CCCCcccCCCeeEEEeCCCCC----CCCceEEeeecCCCcEEEEEecCC--cEEEccCCCCC---CCCCCCCC--CHHHH
Q 013476          306 NVQPMICPSSGVHIVLPDYYS----PEGMGLIVPKTKDGRVVFMLPWLG--RTVAGTTDSDT---VITLLPEP--HEDEI  374 (442)
Q Consensus       306 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~g--~~~~g~~~~~~---~~~~~~~~--~~~~~  374 (442)
                      ..  ++.|.+|+++.++....    ....+.++....+ ..+|++|..+  ++++|.+....   ....+..+  +++..
T Consensus       215 ~~--pl~~~rg~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~y~~p~~~g~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~  291 (389)
T 2gf3_A          215 DI--PLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPN-GIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDE  291 (389)
T ss_dssp             EC--CCEEEEEEEEEECCCHHHHBGGGTCCEEEEEETT-EEEEEECBSTTCCEEEEESSCCEECCTTTCCCCTTSSHHHH
T ss_pred             CC--ceEEEEEEEEEEecCcccccccccCCEEEEeCCC-CcEEEcCCCCCCcEEEEEcCCCCccCcccccCccCCCHHHH
Confidence            43  68899999888865420    0012233321222 2688999754  88898765210   11234556  78888


Q ss_pred             HHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEecc
Q 013476          375 QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGG  435 (442)
Q Consensus       375 ~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg  435 (442)
                      +.+++.+.+++ |.+.. ++.+.|+|+||+|||          +.|+|..++  ||+++++|-
T Consensus       292 ~~l~~~~~~~~-P~l~~-~~~~~w~g~r~~t~D----------~~p~ig~~~~~~~l~~a~G~  342 (389)
T 2gf3_A          292 SNLRAFLEEYM-PGANG-ELKRGAVCMYTKTLD----------EHFIIDLHPEHSNVVIAAGF  342 (389)
T ss_dssp             HHHHHHHHHHC-GGGCS-CEEEEEEEEEEECTT----------SCCEEEEETTEEEEEEEECC
T ss_pred             HHHHHHHHHhC-CCCCC-CceEEEEEEeccCCC----------CCeEEccCCCCCCEEEEECC
Confidence            99999999999 77776 788999999999999          689998864  789999983

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.97  E-value=4.9e-30  Score=246.15  Aligned_cols=323  Identities=19%  Similarity=0.215  Sum_probs=215.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHH-hhhccCcchHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEK-AVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +.++||||||||++|+++|++|+++|++|+|||+..+++++|+.+.|++.+....... ....+.....+.+.+......
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   94 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELY   94 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999999988888899999888765432100 000000011111101111100


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      ........+.. ...+......          ...+.+.........++++.+++...+|.+    ......+.+.+..+
T Consensus        95 ~~~~~~~~~~~-~g~l~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~----~~~~~~~~~~~~~~  159 (382)
T 1ryi_A           95 ALSGVDIRQHN-GGMFKLAFSE----------EDVLQLRQMDDLDSVSWYSKEEVLEKEPYA----SGDIFGASFIQDDV  159 (382)
T ss_dssp             HHHCCCCCCBC-CCEEEEESSH----------HHHHHHHTTTTSTTEEEEEHHHHHHHCTTS----CTTCCEEEEETTCC
T ss_pred             HhhCCCcCeee-cceEEEEeCH----------HHHHHHHHHhhcCCeEEECHHHHHHhCCCC----CcccceEEEeCCCe
Confidence            00001111100 0000000010          011111111110237788888888888876    32223333445678


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .+++..+...|.+.+++.|++++++++|++|..+++  ++ +|..   .+  . .+.||.||+|+|.++..|++.++...
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~--~~-~v~~---~~--g-~~~a~~vV~A~G~~s~~l~~~~~~~~  230 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGE--AL-FIKT---PS--G-DVWANHVVVASGVWSGMFFKQLGLNN  230 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSS--SE-EEEE---TT--E-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECC--EE-EEEc---CC--c-eEEcCEEEECCChhHHHHHHhcCCCC
Confidence            899999999999999999999999999999998774  44 4543   22  2 78999999999999988999887653


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcC
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN  386 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (442)
                        ++.|.+|+++.++....... ..++.   +  ..|++|. ++.+++|.+.+..  ..+..++++..+.+++.+.+++ 
T Consensus       231 --~~~~~~g~~~~~~~~~~~~~-~~~~~---~--~~~~~p~~~g~~~vG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-  299 (382)
T 1ryi_A          231 --AFLPVKGECLSVWNDDIPLT-KTLYH---D--HCYIVPRKSGRLVVGATMKPG--DWSETPDLGGLESVMKKAKTML-  299 (382)
T ss_dssp             --CCEEEEEEEEEEECCSSCCC-SEEEE---T--TEEEEECTTSEEEEECCCEET--CCCCSCCHHHHHHHHHHHHHHC-
T ss_pred             --ceeccceEEEEECCCCCCcc-ceEEc---C--CEEEEEcCCCeEEEeeccccc--CCCCCCCHHHHHHHHHHHHHhC-
Confidence              68899998887764332211 22222   2  3788997 4678899876542  3455677888999999999999 


Q ss_pred             CCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccc
Q 013476          387 VKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGK  436 (442)
Q Consensus       387 ~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~  436 (442)
                      |.+...++.+.|+|+||+|+|          +.|+|...+  +|+++++|-.
T Consensus       300 p~l~~~~~~~~w~g~~~~t~d----------~~p~ig~~~~~~~l~~~~G~~  341 (382)
T 1ryi_A          300 PAIQNMKVDRFWAGLRPGTKD----------GKPYIGRHPEDSRILFAAGHF  341 (382)
T ss_dssp             GGGGGSEEEEEEEEEEEECSS----------SCCEEEEETTEEEEEEEECCS
T ss_pred             CCcCCCceeeEEEEecccCCC----------CCcEeccCCCcCCEEEEEcCC
Confidence            788877889999999999999          688998764  7888887743

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.97  E-value=4e-29  Score=240.99  Aligned_cols=328  Identities=14%  Similarity=0.075  Sum_probs=209.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC--CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ++||||||||++|+++|++|+++|++|+||||...+.  ++|..+.+++......  .       .......+.+..+..
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~   74 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQ--E-------DLFRLTLETLPLWRA   74 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSS--H-------HHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCc--c-------hhhhHHHHHHHHHHH
Confidence            4899999999999999999999999999999997655  6666555554321100  0       000111111111111


Q ss_pred             HHHh-CCcccccCCCcccCCchh--hHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeE-EEe
Q 013476          149 VIRN-APHLSNALPCMTPCFDWF--EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA-VVY  224 (442)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~  224 (442)
                      +... ..........+.......  .....   ....+++. ..+++ .+.++.++....+|.+    ......++ +.+
T Consensus        75 l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~---~~~~~~~~-~~g~~-~~~l~~~~~~~~~p~~----~~~~~~~~~~~~  145 (397)
T 2oln_A           75 LESRCERRLIHEIGSLWFGDTDVVTNEGQI---SGTAAMMD-KLSVR-YEWLKATDIERRFGFR----GLPRDYEGFLQP  145 (397)
T ss_dssp             HHHHHTCCCEECCCEEEEECSSCCBTTBCH---HHHHHHHH-HTTCC-CEEEEHHHHHHHHCCC----SCCTTCEEEEET
T ss_pred             HHHHhCccHHHHCCcEEEcCCCccchhHHH---HHHHHHHH-HcCCC-ceecCHHHHHhhCcCc----cCCCceeEEEcC
Confidence            1111 001111100000000000  00000   02223332 45665 6777888887777766    33333344 445


Q ss_pred             eCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       225 ~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ..+.+++..++..|.+.+++.|++|+++++|++|+.+++  .+.   +.. .+   .+++||.||+|+|.|+.+|++.+|
T Consensus       146 ~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~--~v~---v~t-~~---g~i~a~~VV~A~G~~s~~l~~~~g  216 (397)
T 2oln_A          146 DGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDAD--GVS---VTT-DR---GTYRAGKVVLACGPYTNDLLEPLG  216 (397)
T ss_dssp             TCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETT--EEE---EEE-SS---CEEEEEEEEECCGGGHHHHHGGGT
T ss_pred             CCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCC--eEE---EEE-CC---CEEEcCEEEEcCCcChHHHhhhcC
Confidence            577899999999999999999999999999999998764  442   332 22   269999999999999999999888


Q ss_pred             CCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCc----EEEEEecC-C----cEEEccCCC--CC--CCCCCCCCCH
Q 013476          305 QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGR----VVFMLPWL-G----RTVAGTTDS--DT--VITLLPEPHE  371 (442)
Q Consensus       305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~-g----~~~~g~~~~--~~--~~~~~~~~~~  371 (442)
                      ..  .++.+.+++++.++........+.++....+++    ..|++|.. +    ++++|.+..  ..  ....+..+++
T Consensus       217 ~~--~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  294 (397)
T 2oln_A          217 AR--LAYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADR  294 (397)
T ss_dssp             CC--CCEEEEEEEEEEEEBCSCCSCCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGGGCCSSCCH
T ss_pred             CC--CCeeEEEEEEEEEeecCcccCCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCccccCCCCH
Confidence            75  368999998887754321112233332122322    57888963 3    588987653  10  1123456778


Q ss_pred             HHHHHHHHHhhhhcCCCCCCCCeeeeeeeccc--cccCCCCCCCCCcccceeeEecC------CCeEEEecccccc
Q 013476          372 DEIQFILDAISDYLNVKVRRTDVLSAWSGIRP--LAMDPSAKNTESISRDHVVCEDF------PGLVTITGGKWTT  439 (442)
Q Consensus       372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~--~t~D~~~~~~~~~~~~~~i~~~~------~~~~~~~gg~~~~  439 (442)
                      +..+.+.+.+.+++ |.+.. .+.+.|+|+|+  +|||          +.|+|..++      ||+++++||-|.+
T Consensus       295 ~~~~~l~~~~~~~~-p~l~~-~~~~~~~g~~~~p~t~D----------~~p~ig~~~~~~~~~~~l~~a~Gg~G~~  358 (397)
T 2oln_A          295 RQMDRLSGWLRDHL-PTVDP-DPVRTSTCLAVLPTDPE----------RQFFLGTARDLMTHGEKLVVYGAGWAFK  358 (397)
T ss_dssp             HHHHHHHHHHHHHC-TTBCS-SCSEEEEEEEEEESSTT----------CCCEEEESTTTSTTGGGEEEEEESSCGG
T ss_pred             HHHHHHHHHHHHhC-CCCCC-CceeEEEEEecCCcCCC----------CCeEeecCCccccCCCCEEEEeCcchhh
Confidence            88999999999999 77776 67889999988  9999          689999863      6899999954443

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.97  E-value=8.1e-30  Score=249.74  Aligned_cols=321  Identities=17%  Similarity=0.129  Sum_probs=213.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEec-cCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVER-EDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      |.++||||||||++|+++|++|+++| ++|+|||| ..++.++|+.+.|+++.......         ...+.......+
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~g~S~~~~g~i~~~~~~~~---------~~~l~~~~~~~~   91 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGDSGRSMAAFRTFFSSTM---------NRLVAGSTVRLF   91 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTCSGGGSSCCEEECCCSSHH---------HHHHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCCCcccCCCcEecccCCCHH---------HHHHHHHHHHHH
Confidence            45699999999999999999999999 99999999 67888899999988876432110         011111111111


Q ss_pred             HHHHHhC--CcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcc-----eec-----------CHhhHHhhCCc
Q 013476          147 KQVIRNA--PHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLS-----RYY-----------SAQESAELFPT  208 (442)
Q Consensus       147 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~-----------~~~~~~~~~p~  208 (442)
                      ..+....  ..+. ....+. ..........   ....+.+ +..+++ .     +++           +.+++..    
T Consensus        92 ~~l~~~g~~~~~~-~~g~l~-~~~~~~~~~~---~~~~~~~-~~~g~~-~~p~~~~~l~~~g~~~~~~~~~~~~~~----  160 (448)
T 3axb_A           92 EDAQRGGEDLGLV-KSGYLF-VYDRERWREV---EEPLREA-GEEGRD-YLIIPPEELERRLGMNTRVSDGEEAEV----  160 (448)
T ss_dssp             HHHHHTTCCCCCB-CCCEEE-EECHHHHHHH---HHHHTTS-CCBTTT-EEEECHHHHHHHHCCCCCCTTSSHHHH----
T ss_pred             HHHHhcCcccccc-cCCEEE-EcCHHHHHHH---HHHHHHH-HhhCCC-ccccchhhhhhcccccccCCCHHHHHh----
Confidence            1111110  1111 111111 1111111100   0111111 233443 3     444           5555444    


Q ss_pred             cccccccCCceeEE-EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEE---------------cCCCCeEEEEEE
Q 013476          209 LAMKAKDRSLKGAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIK---------------DEASNRIIGARI  272 (442)
Q Consensus       209 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~---------------~~~g~~v~gV~~  272 (442)
                      +    ......+++ .+..+.+++..++..|.+.++++|++|+++++|++|..               ++ + +|++|.+
T Consensus       161 ~----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~-~-~v~~V~t  234 (448)
T 3axb_A          161 L----GVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE-A-RASAAVL  234 (448)
T ss_dssp             H----TCCCCCEEEEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC-E-EEEEEEE
T ss_pred             c----cCCCceEEEEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC-C-ceEEEEe
Confidence            1    123334444 34577899999999999999999999999999999988               44 4 7777765


Q ss_pred             EECCCCceEEE--EcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCC-CC------------CceEEeeec
Q 013476          273 RNNLSGKEFDT--YAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS-PE------------GMGLIVPKT  337 (442)
Q Consensus       273 ~~~~~g~~~~i--~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~-~~------------~~~~~~~~~  337 (442)
                         .+|   ++  .||.||+|+|.|+..|++.+|+.  .++.|.+|+++.++.... ..            ..+.++.  
T Consensus       235 ---~~g---~i~~~Ad~VV~AtG~~s~~l~~~~g~~--~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--  304 (448)
T 3axb_A          235 ---SDG---TRVEVGEKLVVAAGVWSNRLLNPLGID--TFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIIL--  304 (448)
T ss_dssp             ---TTS---CEEEEEEEEEECCGGGHHHHHGGGTCC--CSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEE--
T ss_pred             ---CCC---EEeecCCEEEECCCcCHHHHHHHcCCC--CcccccceEEEEeCCcccccccccccccccccCCCceEEc--
Confidence               233   57  99999999999999999998875  478999999888864321 00            0123332  


Q ss_pred             CCCcEEEEEecC--CcEEEccCCCCC-CCCCCC--CCCHHH-HHHHHHHhhhhcCCCCCCCCeeeeeeecccc-ccCCCC
Q 013476          338 KDGRVVFMLPWL--GRTVAGTTDSDT-VITLLP--EPHEDE-IQFILDAISDYLNVKVRRTDVLSAWSGIRPL-AMDPSA  410 (442)
Q Consensus       338 ~~~~~~~~~p~~--g~~~~g~~~~~~-~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~-t~D~~~  410 (442)
                      .  ..+|++|+.  |.+++|++.+.. ....+.  .++++. .+.+++.+.+++ |.+...++.+.|+|+||+ |+|   
T Consensus       305 ~--~~~y~~p~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G~r~~~t~d---  378 (448)
T 3axb_A          305 P--KRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYL-PQFQDAYPSGGWAGHYDISFDA---  378 (448)
T ss_dssp             T--TTEEEEEETTTTEEEEEECCCTTSCBCCCSSCCCCHHHHHHHTHHHHHHHC-GGGTTCCCSEEEEEEEEEETTS---
T ss_pred             C--CceEEeecCCCCeEEEecCCcccCCcccccccCCChHHHHHHHHHHHHHhC-cCcccCCcccceEEEeccccCC---
Confidence            1  357899975  478999987631 112233  667788 899999999999 888888899999999999 999   


Q ss_pred             CCCCCcccceeeEecCCCeEEEeccccc
Q 013476          411 KNTESISRDHVVCEDFPGLVTITGGKWT  438 (442)
Q Consensus       411 ~~~~~~~~~~~i~~~~~~~~~~~gg~~~  438 (442)
                             +.|+|..+++|+++++|..+.
T Consensus       379 -------~~p~ig~~~~~l~~a~G~~g~  399 (448)
T 3axb_A          379 -------NPVVFEPWESGIVVAAGTSGS  399 (448)
T ss_dssp             -------SCEEECGGGCSEEEEECCTTC
T ss_pred             -------CCcEeeecCCCEEEEECCCch
Confidence                   689998877999999987543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.97  E-value=1.6e-29  Score=259.44  Aligned_cols=311  Identities=15%  Similarity=0.082  Sum_probs=202.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +.++||||||||++|+++|++|+++|++|+||||.. +++++|+++.|.+++...........+.........+.+.+  
T Consensus       262 ~~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~--  339 (689)
T 3pvc_A          262 TRCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQ--  339 (689)
T ss_dssp             SCCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTTCSGGGCSCEEECCCCCSSCSHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCccccccccccCCEEecCCCCCChHHHHHHHHHHHHHHHHHHH--
Confidence            456999999999999999999999999999999975 77788999888887543211100000000000011111111  


Q ss_pred             HHHHhCCc-ccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCC--cceecCHhhHHhhCCccccccccCCceeEEEe
Q 013476          148 QVIRNAPH-LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH--LSRYYSAQESAELFPTLAMKAKDRSLKGAVVY  224 (442)
Q Consensus       148 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  224 (442)
                       +...... .......+.........       .....+. ..+++  ..++++.++....+| +    . ....+.+.+
T Consensus       340 -l~~~~~~~~~~~~g~l~~~~~~~~~-------~~~~~~~-~~g~~~~~~~~l~~~~~~~~~~-l----~-~~~gg~~~p  404 (689)
T 3pvc_A          340 -LLEQGIAFDHQWCGVSQLAFDDKSR-------GKIEKML-HTQWPVEFAEAMSREQLSELAG-L----D-CAHDGIHYP  404 (689)
T ss_dssp             -HHHTTCCCCEECCCEEEECCSHHHH-------HHHHHHT-TSCCCTTTCEEECHHHHHHHHS-S----C-CSSCEEEET
T ss_pred             -hhhhccccccccCceEEeccCHHHH-------HHHHHHH-hcCCChHHhhccCHHHHHHhcC-C----C-cccceEEec
Confidence             1011000 00011111111111111       1122222 34544  234888888877776 4    1 223344456


Q ss_pred             eCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       225 ~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ..+.+++..++..|.+.+++.|++|+++++|++|+.++++  + .|...   +|. ..+.||.||+|+|.|+..+.+.++
T Consensus       405 ~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v-~V~t~---~G~-~~i~Ad~VVlAtG~~s~~l~~~~~  477 (689)
T 3pvc_A          405 AGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ--W-QLTFG---QSQ-AAKHHATVILATGHRLPEWEQTHH  477 (689)
T ss_dssp             TCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS--E-EEEEC----CC-CCEEESEEEECCGGGTTCSTTTTT
T ss_pred             CCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe--E-EEEeC---CCc-EEEECCEEEECCCcchhccccccC
Confidence            6889999999999999999999999999999999998754  3 34432   221 158999999999999988887654


Q ss_pred             CCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC---CcEEEccCCCCCCCCCCCCCCHHHHHHHHHHh
Q 013476          305 QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL---GRTVAGTTDSDTVITLLPEPHEDEIQFILDAI  381 (442)
Q Consensus       305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (442)
                          .++.|++|+++.++..........++.  .+   .|++|..   |.+++|++.+..  ..+..++++..+++++.+
T Consensus       478 ----lpl~p~rGq~~~~~~~~~~~~l~~v~~--~~---~Yl~P~~~~~g~~~iGat~~~~--~~d~~~~~~~~~~ll~~l  546 (689)
T 3pvc_A          478 ----LPLSAVRGQVSHIPTTPVLSQLQQVLC--YD---GYLTPVNPANQHHCIGASYQRG--DIATDFRLTEQQENRERL  546 (689)
T ss_dssp             ----SCCEEEEEEEEEEECCTTGGGCCSEEE--SS---SEECCCBTTTTEEEEECCCEET--BCCCCCCHHHHHHHHHHH
T ss_pred             ----CccccccCcEEEECCCCccccCCeeEe--CC---ceEccccCCCCeEEEEEeccCC--CCCCCCCHHHHHHHHHHH
Confidence                368899999988865432111222332  12   5889975   678999988653  345677888899999999


Q ss_pred             hhhcCCCCC-----CCCeeeeeeeccccccCCCCCCCCCcccceeeEec
Q 013476          382 SDYLNVKVR-----RTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED  425 (442)
Q Consensus       382 ~~~~~~~l~-----~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~  425 (442)
                      .+++ |.+.     +..+.+.|+|+||+|+|          +.|+|...
T Consensus       547 ~~~~-P~l~~~~~~~~~~~~~w~G~R~~t~D----------~lPiiG~~  584 (689)
T 3pvc_A          547 LRCL-PQVSWPQQVDVSDNQARCGVRCAIRD----------HLPMVGAV  584 (689)
T ss_dssp             HHHC-TTCSGGGGCCCTTCCEEEEEEEECTT----------SCCEEEEE
T ss_pred             HHhC-CCccccccccccccceeEEEeeecCC----------CCcccCcC
Confidence            9999 7765     34568899999999999          67888754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.96  E-value=2.1e-28  Score=251.01  Aligned_cols=305  Identities=14%  Similarity=0.094  Sum_probs=202.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ..+||||||||++|+++|++|+++|++|+||||.. +++++|+++.|.+++.........       .+.....+.....
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~-------~~~~~~~~~~~~~  343 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEAL-------NRFFSNAFTFARR  343 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHH-------HHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccCccCCCceecCcCCCCccHH-------HHHHHHHHHHHHH
Confidence            34999999999999999999999999999999974 777889999888876432211100       0111111111112


Q ss_pred             HHHhCCccc--ccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCC--cceecCHhhHHhhCCccccccccCCceeEEEe
Q 013476          149 VIRNAPHLS--NALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH--LSRYYSAQESAELFPTLAMKAKDRSLKGAVVY  224 (442)
Q Consensus       149 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  224 (442)
                      .+.......  .....+.........       .....+. ..+++  ..++++.++.....| +    . ....+.+.+
T Consensus       344 ~~~~l~~~~~~~~~g~l~~~~~~~~~-------~~~~~~~-~~g~~~~~~~~l~~~~~~~~~~-l----~-~~~gg~~~p  409 (676)
T 3ps9_A          344 FYDQLPVKFDHDWCGVTQLGWDEKSQ-------HKIAQML-SMDLPAELAVAVEANAVEQITG-V----A-TNCSGITYP  409 (676)
T ss_dssp             HHHHCCSCCCEECCCEEEECCSHHHH-------HHHHHHH-TSCCCTTTCEEECHHHHHHHHS-S----C-CSSCEEEET
T ss_pred             HHHHCCCCcCcCcCCeeeecCCHHHH-------HHHHHHH-hcCCcHHHhhhCCHHHHHHhhC-C----C-ccCCcEEec
Confidence            222211000  000111111111111       1122222 34444  344888888877766 3    1 223334445


Q ss_pred             eCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       225 ~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ..+.+++..++..|.+.+++.|++|+++++|++|+.+++  ++ +|..   .+|.  ++.||.||+|+|.|+..+.+..+
T Consensus       410 ~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~--~v-~V~t---~~G~--~i~Ad~VVlAtG~~s~~l~~~~~  481 (676)
T 3ps9_A          410 QGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDD--CW-LLNF---AGDQ--QATHSVVVLANGHQISRFSQTST  481 (676)
T ss_dssp             TCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETT--EE-EEEE---TTSC--EEEESEEEECCGGGGGCSTTTTT
T ss_pred             CCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCC--eE-EEEE---CCCC--EEECCEEEECCCcchhccccccC
Confidence            688999999999999999999999999999999999874  43 3443   2333  69999999999999988887653


Q ss_pred             CCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC---CcEEEccCCCCCCCCCCCCCCHHHHHHHHHHh
Q 013476          305 QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL---GRTVAGTTDSDTVITLLPEPHEDEIQFILDAI  381 (442)
Q Consensus       305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (442)
                          .++.|++|+++.++..........++.  .+   .|++|..   +.+++|++.+.  ...+..++++..+++++.+
T Consensus       482 ----lpl~p~rGq~~~~~~~~~~~~l~~~l~--~~---~Yl~P~~~~~g~~~iG~t~~~--~~~d~~~~~~~~~~~l~~l  550 (676)
T 3ps9_A          482 ----LPVYSVAGQVSHIPTTPELAELKQVLC--YD---GYLTPQNPANQHHCIGASYHR--GSEDTAYSEDDQQQNRQRL  550 (676)
T ss_dssp             ----CSCEEEEEEEEEEECCTTGGGCCSEEE--SS---SEECCCBTTTTEEEEECCCEE--TCCCCCCCHHHHHHHHHHH
T ss_pred             ----CcceeecCEEEEECCCcccccCCceeE--CC---eeeccccCCCCeEEEeeccCC--CCCCCCCCHHHHHHHHHHH
Confidence                368899999988865432111222222  12   5889964   77899998765  3346678888899999999


Q ss_pred             hhhcCCCCC-----CCCeeeeeeeccccccCCCCCCCCCcccceeeEec
Q 013476          382 SDYLNVKVR-----RTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED  425 (442)
Q Consensus       382 ~~~~~~~l~-----~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~  425 (442)
                      .+++ |.+.     +..+.+.|+|+||+|+|          +.|+|...
T Consensus       551 ~~~~-P~l~~~~~~d~~~~~~~~G~R~~t~D----------~lPiiG~~  588 (676)
T 3ps9_A          551 IDCF-PQAQWAKEVDVSDKEARCGVRCATRD----------HLPMVGNV  588 (676)
T ss_dssp             HHHS-TTCHHHHTCCCTTCCEEEEEEEECTT----------CCCEEEEE
T ss_pred             HHhC-CCccccccCcccccceEEEEeCccCC----------cCCccCcC
Confidence            9999 7764     24567899999999999          67888764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.96  E-value=1.6e-27  Score=249.82  Aligned_cols=320  Identities=15%  Similarity=0.169  Sum_probs=216.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC--CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF--SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      .++||||||||++|+++|++|+++|. +|+||||+..  .+++++++.|++......           .  .........
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~-----------~--~~~~l~~~s   69 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPS-----------K--TMASFAKYT   69 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSC-----------H--HHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCcccceeCCceeecCCCC-----------H--HHHHHHHHH
Confidence            35899999999999999999999998 9999999975  356677777665332100           0  001111111


Q ss_pred             HHHHHhCCc----ccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEE
Q 013476          147 KQVIRNAPH----LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAV  222 (442)
Q Consensus       147 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  222 (442)
                      ...+.....    .......+............   ....+++ +..|++ .++++.++....+|.+    ......+++
T Consensus        70 ~~~~~~l~~~~~~~~~~~G~l~~~~~~~~~~~l---~~~~~~~-~~~G~~-~~~l~~~e~~~~~p~l----~~~~~~gg~  140 (830)
T 1pj5_A           70 VEKLLSLTEDGVSCFNQVGGLEVATTETRLADL---KRKLGYA-AAWGIE-GRLLSPAECQELYPLL----DGENILGGL  140 (830)
T ss_dssp             HHHHHHCEETTEESEECCCEEEEESSHHHHHHH---HHHHHHH-HHHTCC-CEEECHHHHHHHCTTS----CGGGCCEEE
T ss_pred             HHHHHHHHhhCCCCeeecCcEEEEeCHHHHHHH---HHHHHHH-HHcCCC-eEEECHHHHHHhCccC----CccceEEEE
Confidence            111111110    00000000001111111111   1122222 245665 7889999999989887    444445555


Q ss_pred             E-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhh
Q 013476          223 V-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK  301 (442)
Q Consensus       223 ~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~  301 (442)
                      + +.++.++|..++..|.+.++++|++|+++++|++|..++ + ++++|.+.   +   ..++||.||+|+|.|+..+.+
T Consensus       141 ~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~-~-~v~~V~t~---~---G~i~Ad~VV~AaG~~s~~l~~  212 (830)
T 1pj5_A          141 HVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-G-RVTGVQTA---D---GVIPADIVVSCAGFWGAKIGA  212 (830)
T ss_dssp             EETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEET---T---EEEECSEEEECCGGGHHHHHH
T ss_pred             EECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeC-C-EEEEEEEC---C---cEEECCEEEECCccchHHHHH
Confidence            4 567889999999999999999999999999999999876 4 77777652   2   279999999999999999999


Q ss_pred             hhCCCCCCcccCCCeeEEEeCCCCC---------CCCceEEeeecCCCcEEEEEecCCcEEEccCCCCC--------CC-
Q 013476          302 LADQNVQPMICPSSGVHIVLPDYYS---------PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDT--------VI-  363 (442)
Q Consensus       302 ~~g~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~--------~~-  363 (442)
                      ++|+..  ++.|.+++++.+.....         ....+++..  .+ ..+|++|..+++++|.+....        .. 
T Consensus       213 ~~g~~~--pl~p~~g~~~~~~~~~~~~~~~~~~~~~~~pv~~~--~~-~~~y~r~~~~~l~iG~~~~~~~~~~~~~~~~t  287 (830)
T 1pj5_A          213 MIGMAV--PLLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRH--QD-QDLYYREHGDRYGIGSYAHRPMPVDVDTLGAY  287 (830)
T ss_dssp             TTTCCC--CCEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEE--GG-GTEEEEEETTEEEEEECCSCCCBCCGGGSCCC
T ss_pred             HhCCCc--cceeceeEEEEEecCcccccccccccCCCCCeEEc--CC-CCEEEEEeCCeEEEeccCCCCcccCccccccc
Confidence            888764  68999999887754211         011222221  22 247889988888888764210        00 


Q ss_pred             ----------CCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEE
Q 013476          364 ----------TLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVT  431 (442)
Q Consensus       364 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~  431 (442)
                                +.+..++++.++.+++.+.+++ |.+...++.+.|+|+||+|||          +.|+|...+  +|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~i~~~w~G~r~~t~D----------~~PiIG~~p~~~gl~v  356 (830)
T 1pj5_A          288 APETVSEHHMPSRLDFTLEDFLPAWEATKQLL-PALADSEIEDGFNGIFSFTPD----------GGPLLGESKELDGFYV  356 (830)
T ss_dssp             CGGGCBTTBSTTEECCCHHHHHHHHHHHHHHC-GGGGGSCEEEEEEEEEEECTT----------SCCEEEECSSSBTEEE
T ss_pred             ccccccccccccccCCCHHHHHHHHHHHHHhC-ccccccCcceEEEeecccCCC----------CCeeeccCCCCCCEEE
Confidence                      1223467888899999999999 888888999999999999999          689999864  89999


Q ss_pred             Eecc
Q 013476          432 ITGG  435 (442)
Q Consensus       432 ~~gg  435 (442)
                      ++|-
T Consensus       357 a~G~  360 (830)
T 1pj5_A          357 AEAV  360 (830)
T ss_dssp             EESC
T ss_pred             EECc
Confidence            9884

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.96  E-value=2.4e-27  Score=231.53  Aligned_cols=326  Identities=14%  Similarity=0.077  Sum_probs=199.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCCCCCCcc-CCCCcccchhhhhHHhhhccCcchH------HHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSGTSS-RSTKLIHGGVRYLEKAVFNLDYGQL------KLVF  140 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~  140 (442)
                      +.++||||||||++|+++|++|+++|+ +|+||||....++.+. ...+.+.... +.       .....      ....
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~l~~   75 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSG-QY-------SNNKDEIEVNEILAE   75 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTCTTCSSCEEECCC-CS-------CCCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCccCCCCccEEEec-cC-------CchhhhcchhHHHHH
Confidence            346899999999999999999999999 9999999975544332 2221111100 00       00000      1111


Q ss_pred             HHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCc-cccccccCCce
Q 013476          141 HALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPT-LAMKAKDRSLK  219 (442)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~  219 (442)
                      +.+..+... ............+..........      .+...+....+.+..++++.+++...+|. +    ....+.
T Consensus        76 ~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~~------~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l----~~~~~~  144 (438)
T 3dje_A           76 EAFNGWKND-PLFKPYYHDTGLLMSACSQEGLD------RLGVRVRPGEDPNLVELTRPEQFRKLAPEGV----LQGDFP  144 (438)
T ss_dssp             HHHHHHHHC-TTTGGGEECCCEEEEECSHHHHH------HHHHHHCGGGCTTCEEECSHHHHHTTSCTTT----SCSCCT
T ss_pred             HHHHHHhhC-ccccCcEeccceEEEecCcchHH------HHHHHHhhcccCCceecCCHHHHHHhCCccc----ccCCCC
Confidence            111111110 00000011111111111111111      12222222345553477888888888886 4    223333


Q ss_pred             ---eEEEeeC-cccChHHHHHHHHHHHHHcCceEecCe---EEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEcc
Q 013476          220 ---GAVVYYD-GQMNDSRLNVGLALTAALAGAAVLNHA---EVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA  292 (442)
Q Consensus       220 ---~~~~~~~-~~~~~~~l~~~l~~~~~~~Gv~i~~~~---~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAt  292 (442)
                         +.+.+.. +.+++..++..|.+.++++|++|++++   +|++|..++ + +++||++.   +|  .++.||.||+|+
T Consensus       145 g~~g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~-~-~v~gV~t~---~G--~~i~Ad~VV~At  217 (438)
T 3dje_A          145 GWKGYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN-N-DVKGAVTA---DG--KIWRAERTFLCA  217 (438)
T ss_dssp             TCEEEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET-T-EEEEEEET---TT--EEEECSEEEECC
T ss_pred             CceEEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC-C-eEEEEEEC---CC--CEEECCEEEECC
Confidence               4445567 899999999999999999999999999   999999877 5 88888773   34  379999999999


Q ss_pred             CCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCC----CCCceEEeeecCCCcEEEEEec-CCc-EEEccCC----CCC-
Q 013476          293 GPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS----PEGMGLIVPKTKDGRVVFMLPW-LGR-TVAGTTD----SDT-  361 (442)
Q Consensus       293 G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~-~g~-~~~g~~~----~~~-  361 (442)
                      |+|+..|++ ++    .++.|.+++...++....    ....+.+..  . +..+|+.|. +++ ++++...    ... 
T Consensus       218 G~~s~~l~~-l~----~~~~p~~~~~~~~~l~~~~~~~~~~~p~~~~--~-~~~~~~~p~~~~~~l~i~~~~~g~~~~~~  289 (438)
T 3dje_A          218 GASAGQFLD-FK----NQLRPTAWTLVHIALKPEERALYKNIPVIFN--I-ERGFFFEPDEERGEIKICDEHPGYTNMVQ  289 (438)
T ss_dssp             GGGGGGTSC-CT----TCCEEEEEEEEEEECCGGGHHHHTTCCEEEE--T-TTEEECSCCTTTCEEEEEECCSCEECEEE
T ss_pred             CCChhhhcC-cc----cceeeEEEEEEEEEcChHHhhhhcCCCEEEE--C-CCceecCCCCCCCeEEEEeCCCCccCCcc
Confidence            999988877 32    245565554444332111    112233332  1 235676676 444 5564211    100 


Q ss_pred             -------CCCC-CCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEE
Q 013476          362 -------VITL-LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVT  431 (442)
Q Consensus       362 -------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~  431 (442)
                             ..+. ....+++..+.+.+.+.+++ |.+...++.+.|+|+||+|||          +.|+|..++  +|+|+
T Consensus       290 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~~~g~~~~t~D----------~~piig~~p~~~~l~~  358 (438)
T 3dje_A          290 SADGTMMSIPFEKTQIPKEAETRVRALLKETM-PQLADRPFSFARICWCADTAN----------REFLIDRHPQYHSLVL  358 (438)
T ss_dssp             CTTCCEEECCCCCSSCBHHHHHHHHHHHHHHC-GGGTTCCCSEEEEEEEEECTT----------SCCEEEECSSCTTEEE
T ss_pred             CCCcccccCCcccccCCHHHHHHHHHHHHHhC-cccccCCcceeeEEEeCcCCC----------CCeEEeecCCCCCEEE
Confidence                   0011 12345677888999999999 899989999999999999999          689999874  89999


Q ss_pred             Eecccccc
Q 013476          432 ITGGKWTT  439 (442)
Q Consensus       432 ~~gg~~~~  439 (442)
                      ++|..+..
T Consensus       359 a~G~~g~G  366 (438)
T 3dje_A          359 GCGASGRG  366 (438)
T ss_dssp             EECCTTCC
T ss_pred             EECCCCcc
Confidence            99976544

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.96  E-value=1.2e-27  Score=228.64  Aligned_cols=320  Identities=14%  Similarity=0.082  Sum_probs=201.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC--CccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG--TSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g--~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ++||+|||||++|+++|++|+++|++|+||||...+.+  ++..+.+++......        ......+.......+..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~   73 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGE--------GEKYVPLVLRAQMLWDE   73 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTT--------CGGGHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCccceeeeccCC--------CchHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999975543  222222233211100        00111111122222222


Q ss_pred             HHHhCC--cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCc-eeEEEee
Q 013476          149 VIRNAP--HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSL-KGAVVYY  225 (442)
Q Consensus       149 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~  225 (442)
                      +.....  ........+.......  ...   ....+.+ +..+++ .++++.++....+|.+    ..+.. .+.+.+.
T Consensus        74 l~~~~~~~~~~~~~g~l~~~~~~~--~~~---~~~~~~~-~~~g~~-~~~l~~~~~~~~~p~~----~~~~~~~~~~~~~  142 (372)
T 2uzz_A           74 LSRHNEDDPIFVRSGVINLGPADS--TFL---ANVAHSA-EQWQLN-VEKLDAQGIMARWPEI----RVPDNYIGLFETD  142 (372)
T ss_dssp             HHTTCSSSCSEECCCEEEEEETTC--HHH---HHHHHHH-HHTTCC-EEEEEHHHHHHHCTTC----CCCTTEEEEEESS
T ss_pred             HHHhCCCccceeeeceEEEeCCCc--HHH---HHHHHHH-HHcCCC-cEecCHHHHHhhCCCc----cCCCCceEEEeCC
Confidence            110000  1111111000000000  111   0122222 256665 7889999998888876    33333 3444567


Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      .+.++|..++..|.+.+++.|++++++++|++|..+++  .+ .|..   .+|   .+.||.||+|+|.|+..|++.   
T Consensus       143 ~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~--~~-~v~~---~~g---~~~a~~vV~a~G~~s~~l~~~---  210 (372)
T 2uzz_A          143 SGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDD--GV-TIET---ADG---EYQAKKAIVCAGTWVKDLLPE---  210 (372)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS--SE-EEEE---SSC---EEEEEEEEECCGGGGGGTSTT---
T ss_pred             CcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCC--EE-EEEE---CCC---eEEcCEEEEcCCccHHhhccc---
Confidence            88999999999999999999999999999999998774  32 2332   233   589999999999999887762   


Q ss_pred             CCCCcccCCCeeEEEeCCCCCC---CCceEEeeecCCCcEEEEEec-CCcEEEccCCCC--CC---CCCCCCCCHHHHHH
Q 013476          306 NVQPMICPSSGVHIVLPDYYSP---EGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSD--TV---ITLLPEPHEDEIQF  376 (442)
Q Consensus       306 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~--~~---~~~~~~~~~~~~~~  376 (442)
                         .++.|.+++++.+......   ...+.+.....++...|++|. ++.+++|.+...  .+   ...+..++++..+.
T Consensus       211 ---l~~~p~rg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~  287 (372)
T 2uzz_A          211 ---LPVQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVVSDGSE  287 (372)
T ss_dssp             ---CCCEEEECCEEEECCCGGGSTTTTCCEEEEECTTCCEEEEECCSSSCEEEEESSCCEECCSGGGCCCTTTSTTGGGS
T ss_pred             ---cCceEEEEEEEEEEeccccCccccCCEEEEecCCCCeEEecCCCCCeEEEEecCCCCccCChhhccCCCCCHHHHHH
Confidence               3678999988777543110   112233221234456888886 568889886521  11   11122334566778


Q ss_pred             HHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEecccc
Q 013476          377 ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKW  437 (442)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~  437 (442)
                      +++.+.+++ |.+.  ++.+.|+|+||+|||          +.|+|..++  +|+++++|-.+
T Consensus       288 l~~~~~~~~-P~l~--~~~~~~~g~r~~t~d----------~~p~ig~~~~~~~l~~~~G~~g  337 (372)
T 2uzz_A          288 AFPFLRNVL-PGIG--CCLYGAACTYDNSPD----------EDFIIDTLPGHDNTLLITGLSG  337 (372)
T ss_dssp             SHHHHHHHS-CSCC--CEEEECCCEEEECTT----------SCCCEEEETTEEEEEEECCCCS
T ss_pred             HHHHHHHHC-CCCC--ccceeeEEeeccCCC----------CCeEEecCCCCCCEEEEeCCCc
Confidence            899999999 7776  678899999999999          689998764  78999988543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.95  E-value=1.7e-27  Score=229.89  Aligned_cols=306  Identities=15%  Similarity=0.078  Sum_probs=188.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCC-cc-cchhhhhHHhhhccCcchHHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTK-LI-HGGVRYLEKAVFNLDYGQLKLVFHALEE  145 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (442)
                      .++||||||||++|+++|++|+++  |++|+|||+...+.++|+.+++ .+ .... +        ......+..+.+..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~-~--------~~~~~~l~~~~~~~  105 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQD-I--------PAGQEAQAEWTREQ  105 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGG-C--------CTTCHHHHHHHHHH
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeeccc-C--------CchHHHHHHHHHHH
Confidence            458999999999999999999999  9999999999877777776666 33 1110 0        00011111111111


Q ss_pred             HHHHHHh--CCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccc-cCCceeEE
Q 013476          146 RKQVIRN--APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK-DRSLKGAV  222 (442)
Q Consensus       146 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~  222 (442)
                      +......  ...+.. ...+.                ..+.. +..+     +++.++....+|.+..... .....+.+
T Consensus       106 ~~~~~~~~~~~~~~~-~g~l~----------------~~~~~-~~~g-----~l~~~~~~~~~p~~~~~~~~~~~~~~~~  162 (405)
T 3c4n_A          106 LLGALGSGKTLEVED-RPLLH----------------LLPAG-EGSG-----LTPTLDALADFPEALALLDPARLPVARV  162 (405)
T ss_dssp             HHTGGGSSCCCCEEE-CCEEE----------------EESSC-CSSS-----CEEHHHHTTTCHHHHTTSCTTTSCEEEE
T ss_pred             HHHHhCCCCCCcEEe-eCeEE----------------ehhhH-hHCC-----CCCHHHHHHhCCCccccccCCcceEEEE
Confidence            1110000  000000 00000                00000 0111     3445555445554400000 12233444


Q ss_pred             EeeCcccChHHHHHHHHHHHHHcCceEecCeEEE---------EEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          223 VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVI---------SLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       223 ~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~---------~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      .+..+.+++..++..|.+.+++.|++++++++|+         +|..+++  ++ +|.+     .. ..+.||.||+|+|
T Consensus       163 ~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~--~v-~v~~-----~~-g~i~a~~VV~A~G  233 (405)
T 3c4n_A          163 DPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNT--HQ-IVVH-----ET-RQIRAGVIIVAAG  233 (405)
T ss_dssp             ETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CB-----CC-EEEEEEEEEECCG
T ss_pred             cCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCC--eE-EEEE-----CC-cEEECCEEEECCC
Confidence            5668899999999999999999999999999999         8877663  44 4433     12 3799999999999


Q ss_pred             CChHHHhh-hhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCC-cEEEccCCC--CCCCC-----
Q 013476          294 PFCDSVRK-LADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLG-RTVAGTTDS--DTVIT-----  364 (442)
Q Consensus       294 ~~s~~l~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g-~~~~g~~~~--~~~~~-----  364 (442)
                      .|+..|++ .+|+..  ++.|.+|+++.+...... ..+++.    + ..+|++|+.+ .+++|++..  .....     
T Consensus       234 ~~s~~l~~~~~g~~~--~~~~~~g~~~~~~~~~~~-~~~~~~----~-~~~y~~p~~~g~~~~G~t~~~~~~~~~~~~~~  305 (405)
T 3c4n_A          234 AAGPALVEQGLGLHT--RHGRAYRQFPRLDLLSGA-QTPVLR----A-SGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGS  305 (405)
T ss_dssp             GGHHHHHHHHHCCCC--CCEEEEEECCEECSCCCT-TCCEEE----E-TTEEEEEETTEEEEECCCCSCBCSSCCCCCCC
T ss_pred             ccHHHHHHHhcCCCC--CcccceeEEEEECCCCcc-CCCeEE----C-CcEEEEEcCCCeEEEeccccccccCcCccccc
Confidence            99988998 888764  578889987777542211 112222    1 2478999754 567777643  21111     


Q ss_pred             ---CCCCCCHHHHHHHHHHhhhhcCCCCCCCC---------eeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEE
Q 013476          365 ---LLPEPHEDEIQFILDAISDYLNVKVRRTD---------VLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTI  432 (442)
Q Consensus       365 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~  432 (442)
                         .+...+.+.++.+++.+ +++ |.+...+         +.+.|+|+||+|+|          +.|+|...++|+|++
T Consensus       306 ~~~~~~~~~~~~~~~l~~~~-~~~-P~l~~~~~~~~r~~~~i~~~w~G~r~~t~D----------~~P~ig~~~~gl~~a  373 (405)
T 3c4n_A          306 LTGVPTGLRRELLEDLVGLM-DAV-PALAGEGLELGRSSADVPGAWLALPGGRPD----------APPQAEELAPGLHLL  373 (405)
T ss_dssp             BTTBCCSSCHHHHHHHHHHT-TTC-GGGGSSCBCCCSSGGGSCEEEEEEGGGCTT----------CCCEEEEEETTEEEE
T ss_pred             ccccccCCCHHHHHHHHHHH-HhC-CCccccCccccccccceeeEEEeecCcCCC----------CCCEecccCCCeEEE
Confidence               11234566777777664 777 7776654         88899999999999          689999877999999


Q ss_pred             eccc
Q 013476          433 TGGK  436 (442)
Q Consensus       433 ~gg~  436 (442)
                      +|..
T Consensus       374 ~G~~  377 (405)
T 3c4n_A          374 LGGP  377 (405)
T ss_dssp             ECCT
T ss_pred             EccC
Confidence            8875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.95  E-value=2.7e-28  Score=231.22  Aligned_cols=294  Identities=13%  Similarity=0.085  Sum_probs=194.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCC------CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRG------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G------~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      ||||||||++|+++|++|+++|      ++|+|||+...++++|.+++|++.+....      ........+..+.+...
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~aS~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~   75 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSD------PNNPQEADWSQQTFDYL   75 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGSGGGTCCCBCCCCSSC------CSCTHHHHHHHHHHHHH
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCCccccCcceeecccCC------CchHHHHHHHHHHHHHH
Confidence            8999999999999999999998      99999999988888999999988652210      00000111111111111


Q ss_pred             HHHHH------hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCcee
Q 013476          147 KQVIR------NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKG  220 (442)
Q Consensus       147 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  220 (442)
                      .....      .......... .......            ..++ +..+.+ .++++.+++ ..+|.+         .+
T Consensus        76 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~~------------~~~~-~~~~~~-~~~l~~~e~-~~~p~~---------~~  130 (351)
T 3g3e_A           76 LSHVHSPNAENLGLFLISGYN-LFHEAIP------------DPSW-KDTVLG-FRKLTPREL-DMFPDY---------GY  130 (351)
T ss_dssp             HTTTTSTTHHHHTEEEEEEEE-EESSCCC------------CCGG-GGTSEE-EEECCHHHH-TTCTTC---------CE
T ss_pred             HHHhhccCCCCccEEEEEEEE-EecCCcc------------ccCH-HHhCCC-ceECCHHHh-ccCCCC---------ce
Confidence            11000      0000000000 0000000            0111 133443 678888877 344433         34


Q ss_pred             EEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476          221 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR  300 (442)
Q Consensus       221 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~  300 (442)
                      +++..++.++|..++..|.+.++++|++|+. ++|++|..++                   .++||.||+|||.|+..|+
T Consensus       131 ~~~~~~~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-------------------~~~a~~VV~A~G~~s~~l~  190 (351)
T 3g3e_A          131 GWFHTSLILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEVA-------------------REGADVIVNCTGVWAGALQ  190 (351)
T ss_dssp             EEEEEEEEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-------------------HTTCSEEEECCGGGGGGTS
T ss_pred             EEEecceEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-------------------cCCCCEEEECCCcChHhhc
Confidence            4554578999999999999999999999987 8887664321                   1568999999999998876


Q ss_pred             hhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeee---cCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHH
Q 013476          301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK---TKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFI  377 (442)
Q Consensus       301 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~  377 (442)
                      +.      .++.|.+|+++.++... . .. .++..   ..++..+|++|..+++++|++.+.  ...+..++++..+.+
T Consensus       191 ~~------~~l~p~rg~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~y~~p~~~~~~iGg~~~~--~~~~~~~~~~~~~~l  259 (351)
T 3g3e_A          191 RD------PLLQPGRGQIMKVDAPW-M-KH-FILTHDPERGIYNSPYIIPGTQTVTLGGIFQL--GNWSELNNIQDHNTI  259 (351)
T ss_dssp             CC------TTCEEEEEEEEEEECTT-C-CS-EEEECCTTTCTTCSCEEEECSSCEEEECCCEE--TCCCCSCCHHHHHHH
T ss_pred             CC------CceeecCCcEEEEeCCC-c-ce-EEEeccccCCCCceeEEEeCCCcEEEeeeeec--CCCCCCCCHHHHHHH
Confidence            52      47899999988886532 1 22 22221   122345899998779999998765  334567888999999


Q ss_pred             HHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec--CCCeEEEeccc
Q 013476          378 LDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGGK  436 (442)
Q Consensus       378 ~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~--~~~~~~~~gg~  436 (442)
                      ++.+.+++ |.+...++.+.|+|+||+|+| ..      ...++|..+  .++++.++|-.
T Consensus       260 ~~~~~~~~-P~l~~~~i~~~w~G~r~~t~D-~p------~~~~~ig~~~~~~~~~~~~G~~  312 (351)
T 3g3e_A          260 WEGCCRLE-PTLKNARIIGERTGFRPVRPQ-IR------LEREQLRTGPSNTEVIHNYGHG  312 (351)
T ss_dssp             HHHHHHHC-GGGGGCEEEEEEEEEEEECSS-CE------EEEEEECCSSSCEEEEEEECCT
T ss_pred             HHHHHHhC-CCccCCcEeeeeEeeCCCCCC-cc------ceeeeccCCCCCCeEEEEeCCC
Confidence            99999999 888888999999999999998 20      013456654  37888888743

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.94  E-value=4e-26  Score=217.26  Aligned_cols=275  Identities=17%  Similarity=0.132  Sum_probs=172.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCc-----cCCCCcccchhhhhHHhhhccCcchHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS-----SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE  144 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (442)
                      .++||+|||||++|+++|++|+++|++|+||||..++.++|     ..+++.+......      ........+..+.+.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~------~~~~~~~~~~~~~~~   78 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTL------TDGPRQAKWEESTFK   78 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCT------TTCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCcCCcCcccCcccccccCcccC------CCchHHHHHHHHHHH
Confidence            46899999999999999999999999999999998766543     3333333221100      000011111111122


Q ss_pred             HHHHHHHh-CC-cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEE
Q 013476          145 ERKQVIRN-AP-HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAV  222 (442)
Q Consensus       145 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  222 (442)
                      ........ .. ....... +..  ....        ...+++ +..+.+ .+.++.+++    |..         ..++
T Consensus        79 ~~~~~~~~~~g~~~~~~~~-~~~--~~~~--------~~~~~~-~~~g~~-~~~l~~~~~----p~~---------~~g~  132 (363)
T 1c0p_A           79 KWVELVPTGHAMWLKGTRR-FAQ--NEDG--------LLGHWY-KDITPN-YRPLPSSEC----PPG---------AIGV  132 (363)
T ss_dssp             HHHHHTTTTSSEEEEEEEE-EES--SGGG--------GGGGTT-TTTSTT-CEECCGGGS----STT---------CEEE
T ss_pred             HHHHhCcccCCeEEECCEE-EEe--cCcc--------chhHHH-HHhCCC-cEECCHHHC----CCc---------eEEE
Confidence            21111110 00 0000000 000  0000        111222 133433 555655443    211         1233


Q ss_pred             EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476          223 VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL  302 (442)
Q Consensus       223 ~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~  302 (442)
                      .+..+.++|..++..|.+.++++|++|+. ++|++|..+                 .  + .||.||+|+|.|+..|...
T Consensus       133 ~~~~~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~~-----------------~--~-~a~~VV~A~G~~s~~l~~~  191 (363)
T 1c0p_A          133 TYDTLSVHAPKYCQYLARELQKLGATFER-RTVTSLEQA-----------------F--D-GADLVVNATGLGAKSIAGI  191 (363)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGGT-----------------C--S-SCSEEEECCGGGGGTSBTT
T ss_pred             EEecceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhhc-----------------C--c-CCCEEEECCCcchhhccCc
Confidence            33677899999999999999999999987 888776431                 0  1 7899999999999887764


Q ss_pred             hCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHh
Q 013476          303 ADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAI  381 (442)
Q Consensus       303 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (442)
                          ...++.|++|+++.++... +.  .. ++...++...|++|. +|++++|++.+..  ..+..++++..+.+++.+
T Consensus       192 ----~~~~~~p~rg~~~~~~~~~-~~--~~-~~~~~~~~~~y~~p~~~g~~~iG~t~~~~--~~~~~~~~~~~~~l~~~~  261 (363)
T 1c0p_A          192 ----DDQAAEPIRGQTVLVKSPC-KR--CT-MDSSDPASPAYIIPRPGGEVICGGTYGVG--DWDLSVNPETVQRILKHC  261 (363)
T ss_dssp             ----CCTTEEEEEEEEEEEECCC-CC--CE-EECSCTTCCEEEEEETTTEEEEECCCEET--CCCCSCCHHHHHHHHHHH
T ss_pred             ----ccCCccccCCeEEEEeCCc-cc--ce-EeeccCCCcEEEEEcCCCEEEEEeeeccC--CCCCCCCHHHHHHHHHHH
Confidence                2347999999988886543 11  11 221223233889997 5688999987653  345677888999999999


Q ss_pred             hhhcCCCC------CCCCeeeeeeeccccccCC
Q 013476          382 SDYLNVKV------RRTDVLSAWSGIRPLAMDP  408 (442)
Q Consensus       382 ~~~~~~~l------~~~~~~~~~~G~r~~t~D~  408 (442)
                      .+++ |.+      ...++.+.|+|+||+|+|+
T Consensus       262 ~~~~-P~l~~~~~~~~~~i~~~w~G~rp~t~d~  293 (363)
T 1c0p_A          262 LRLD-PTISSDGTIEGIEVLRHNVGLRPARRGG  293 (363)
T ss_dssp             HHHC-GGGSSSSSGGGCEEEEEEEEEEEEETTS
T ss_pred             HHhC-ccccCCcccccceEeeceEEECCCCCCC
Confidence            9999 777      4478899999999999993

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.78  E-value=2e-18  Score=171.10  Aligned_cols=204  Identities=19%  Similarity=0.176  Sum_probs=118.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccc--hhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG--GVRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      +.++||||||+|++|+++|++|+++|++|+||||....++++..+.|.++.  +..........   ...+.+.+.+...
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~~s~G~~~~~~~~~~~~~~g~~---ds~~~~~~~~~~~  115 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKACGFD---DSPENMKTFMMAA  115 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGSCCCEECCSSCHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCcceecCCCCHHHHHhCCC---CCHHHHHHHHHHH
Confidence            456999999999999999999999999999999998777888877776542  23322221111   1222222222111


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCccee-cCHhhH-------------HhhCCccccc
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRY-YSAQES-------------AELFPTLAMK  212 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~-------------~~~~p~~~~~  212 (442)
                            ....         ........+...+.+..+|+. ..|++.... ......             ...++...  
T Consensus       116 ------~~~~---------~~~~~~~~~~~~~~~~i~~l~-~~Gv~~~~~~~~~~~~~~~~~~~~~~~g~e~~~~~~~--  177 (510)
T 4at0_A          116 ------LGPG---------ADEEKITDYCEGSVEHYNWLV-DCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNE--  177 (510)
T ss_dssp             ------SCSS---------CCHHHHHHHHHTHHHHHHHHH-HTTCCCCSCEECSSSSSCSSSCSEECCSSTTSTTGGG--
T ss_pred             ------hCCC---------CCHHHHHHHHHhhHHHHHHHH-HcCCeecccccCCcccccCCcccccccCccccccccc--
Confidence                  0000         001111122222334556664 344431110 000000             00000000  


Q ss_pred             cccCCceeEEEee-----CcccChH-HHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-
Q 013476          213 AKDRSLKGAVVYY-----DGQMNDS-RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-  285 (442)
Q Consensus       213 ~~~~~~~~~~~~~-----~~~~~~~-~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-  285 (442)
                       ............     .+..... .++..|.+.+++.|++|+++++|++|+.+++| +|+||++.+  +++..+|+| 
T Consensus       178 -~~~~~~r~~~~~~~~~~~g~~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g-~v~GV~~~~--~g~~~~i~A~  253 (510)
T 4at0_A          178 -IAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTG-RVVGIVAKQ--YGKEVAVRAR  253 (510)
T ss_dssp             -TSCCCCCEECCCCSSCBTTTBCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTC-CEEEEEEEE--TTEEEEEEEE
T ss_pred             -ccCcccceeeecccccccccCCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCC-cEEEEEEEE--CCcEEEEEeC
Confidence             000000111110     2223333 78999999999999999999999999998557 999999985  455568999 


Q ss_pred             CEEEEccCCChH
Q 013476          286 KVVVNAAGPFCD  297 (442)
Q Consensus       286 ~~VVlAtG~~s~  297 (442)
                      |.||+|||+|+.
T Consensus       254 k~VVlAtGG~~~  265 (510)
T 4at0_A          254 RGVVLATGSFAY  265 (510)
T ss_dssp             EEEEECCCCCTT
T ss_pred             CeEEEeCCChhh
Confidence            599999999984

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.76  E-value=3.7e-17  Score=164.02  Aligned_cols=196  Identities=16%  Similarity=0.131  Sum_probs=122.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      ++.++||||||+|++|+++|+.|+++|++|+||||....++.+..+++.++.......... ... ...+.++..+....
T Consensus       118 ~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~-g~~-ds~~~~~~~~~~~~  195 (566)
T 1qo8_A          118 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAH-GVE-DKVEWFIEDAMKGG  195 (566)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHT-TCC-CCHHHHHHHHHHHT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHh-CCC-CCHHHHHHHHHHhc
Confidence            4667999999999999999999999999999999998767777777666543221111110 011 12222222111110


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      .      ..         ........+........+|+. ..|++ +..+.      .+..       ......+.+.++
T Consensus       196 ~------~~---------~~~~~~~~~~~~~~~~i~~l~-~~Gv~-~~~~~------~~~g-------~~~~r~~~~~~~  245 (566)
T 1qo8_A          196 R------QQ---------NDIKLVTILAEQSADGVQWLE-SLGAN-LDDLK------RSGG-------ARVDRTHRPHGG  245 (566)
T ss_dssp             T------TC---------SCHHHHHHHHHHHHHHHHHHH-HTTCC-CCEEE------CCTT-------CSSCCEEECSSS
T ss_pred             C------CC---------CCHHHHHHHHhccHHHHHHHH-hcCCc-ccccc------ccCC-------CCCCceeecCCC
Confidence            0      00         000111111222334556664 44554 22111      0000       111122333344


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .++...+...|.+.+++.|++|+++++|++|+.++++ +|+||++.+ .+|+...++||.||+|||+|+.
T Consensus       246 ~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          246 KSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH-SVVGAVVHG-KHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS-BEEEEEEEE-TTTEEEEEEEEEEEECCCCCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCC-cEEEEEEEe-CCCcEEEEEcCEEEEecCCccc
Confidence            5667889999999999999999999999999987646 999999975 4665567999999999999985

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.75  E-value=8e-17  Score=161.84  Aligned_cols=195  Identities=16%  Similarity=0.167  Sum_probs=120.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchh-hhhHHhhhccCcchHHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-RYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      ++.++||||||||++|+++|+.|+++|++|+||||....++.+..+++.+.... .........   ...+.+...+.. 
T Consensus       123 ~~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~---ds~~~~~~~~~~-  198 (571)
T 1y0p_A          123 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT---DSPELMFEDTMK-  198 (571)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCC---CCHHHHHHHHHH-
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCC---CCHHHHHHHHHH-
Confidence            455799999999999999999999999999999999876677666665543322 111111111   111111111110 


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                           .....         ........+........+|+. ..|++ +..+.      ...       .......+.+.+
T Consensus       199 -----~g~~~---------~~~~~~~~~~~~~~~~~~~l~-~~Gv~-~~~~~------~~~-------g~~~~r~~~~~~  249 (571)
T 1y0p_A          199 -----GGQNI---------NDPALVKVLSSHSKDSVDWMT-AMGAD-LTDVG------MMG-------GASVNRAHRPTG  249 (571)
T ss_dssp             -----HTTTC---------SCHHHHHHHHHHHHHHHHHHH-HTTCC-CCEEE------CCT-------TCSSCCEEESTT
T ss_pred             -----hcCCC---------CCHHHHHHHHHccHHHHHHHH-hcCCC-CccCc------ccC-------CcCCCeeEecCC
Confidence                 00000         000111112222334556664 35554 21100      000       011122223334


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +...+..+...|.+.+++.|++|+++++|++|+.+++| +|+||++.+ .+|+..++.||.||+|||+|+.
T Consensus       250 g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~-~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          250 GAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG-TVKGILVKG-MYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS-CEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCC-eEEEEEEEe-CCCcEEEEECCeEEEeCCCccc
Confidence            44566789999999999999999999999999987656 999999975 4566668999999999999985

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.71  E-value=1.8e-16  Score=152.13  Aligned_cols=167  Identities=18%  Similarity=0.199  Sum_probs=101.9

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+...|.+.+++.|++++++++++.+..++ + +++++....  +++..+++||.||.|+|..| .+.+.+|+..
T Consensus        98 ~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~-~-~~~~v~~~~--~~~~~~~~a~~vIgAdG~~S-~vr~~~g~~~  172 (397)
T 3oz2_A           98 VLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN-G-KVAGAKIRH--NNEIVDVRAKMVIAADGFES-EFGRWAGLKS  172 (397)
T ss_dssp             EECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET-T-EEEEEEEEE--TTEEEEEEEEEEEECCCTTC-HHHHHHTCGG
T ss_pred             EEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeecc-c-eeeeeeecc--cccceEEEEeEEEeCCcccc-HHHHHcCCCc
Confidence            35677888899999999999999999999999887 4 888887764  55667899999999999998 5788777653


Q ss_pred             CCcccCCCeeE--EE---eCCCCCCCCceEEeeecCCCcEEEEEecCC-cEEEccCCCCCCCCCCCCCCHHHHHHHHHHh
Q 013476          308 QPMICPSSGVH--IV---LPDYYSPEGMGLIVPKTKDGRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAI  381 (442)
Q Consensus       308 ~~~~~~~~g~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (442)
                      .  ..+.....  ..   ......+......+.....+...+++|..+ ...+|.....     +........+..++.+
T Consensus       173 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~-----~~~~~~~~~~~~l~~~  245 (397)
T 3oz2_A          173 V--ILARNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSI-----NWIHNRFELKNYLDRF  245 (397)
T ss_dssp             G--CCCGGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEET-----TTSCSHHHHHHHHHHH
T ss_pred             c--cccceeeeeeEEEEeeccccCcccceeeeeccCCCceEEEeecccceeEEEEeecc-----chhhhhhhHHHHHHHH
Confidence            2  11222111  11   112222222222222123344677778644 4444433211     1122344455555555


Q ss_pred             hhhcCCCCCCCCeeeeeeeccccccC
Q 013476          382 SDYLNVKVRRTDVLSAWSGIRPLAMD  407 (442)
Q Consensus       382 ~~~~~~~l~~~~~~~~~~G~r~~t~D  407 (442)
                      .+.. |.+........+.+..|+...
T Consensus       246 ~~~~-~~l~~~~~~~~~~~~~~~~~~  270 (397)
T 3oz2_A          246 IENH-PGLKKGQDIQLVTGGVSVSKV  270 (397)
T ss_dssp             HHTC-HHHHTSEEEEEEEEEEECCCC
T ss_pred             HHhC-ccccccceeeeeeccccccCc
Confidence            4444 455555566677777776544

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.69  E-value=4.6e-16  Score=157.24  Aligned_cols=202  Identities=16%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHH-HHHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHALEERKQ  148 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  148 (442)
                      .++||||||||++||+||++|+++|++|+||||....++.|..+.|.+......... .   ...+... +.+.+..   
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~-g---~~ds~~~~~~dt~~~---   76 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM-S---DGDNEDLHFMDTVKG---   76 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCEECCCCCSGG-G---TTCCHHHHHHHHHHH---
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcccccCCCeEeccCCccc-C---CCCCHHHHHHHHHHh---
Confidence            458999999999999999999999999999999976555554443333221111000 0   0111111 1111110   


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcc----------------eecCHhhHHhhCCccccc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLS----------------RYYSAQESAELFPTLAMK  212 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------------~~~~~~~~~~~~p~~~~~  212 (442)
                          ....         +.......+...+.+..+++. ..|++..                ++++.++....++.-.. 
T Consensus        77 ----g~~~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~G~~~~~~~g~~~~~l~~~e~~~~~~~~~~-  141 (660)
T 2bs2_A           77 ----SDWG---------CDQKVARMFVNTAPKAIRELA-AWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDF-  141 (660)
T ss_dssp             ----TTTC---------SCHHHHHHHHHHHHHHHHHHH-HTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCC-
T ss_pred             ----cCCC---------CCHHHHHHHHHHHHHHHHHHH-HcCCCceecCCCcccccccccccccccchhhhhhhccccc-
Confidence                0000         001111112222334555554 4444311                12222222211110000 


Q ss_pred             cccCCceeEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEcc
Q 013476          213 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA  292 (442)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAt  292 (442)
                       .........+  ........++..|.+.+++.|++|+++++|++|+.++ | +|+||++.+..+|+...+.||.||+||
T Consensus       142 -gg~~~~R~~~--~~d~tG~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~G~~~~i~A~~VVlAT  216 (660)
T 2bs2_A          142 -GGTKKWRTCY--TADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQD-G-KCYGAVVRDLVTGDIIAYVAKGTLIAT  216 (660)
T ss_dssp             -TTCSSCCEEC--STTCHHHHHHHHHHHHHHHHTCEEECSEEEEEEEEET-T-EEEEEEEEETTTCCEEEEECSEEEECC
T ss_pred             -cccccceeEe--eCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEecC-C-EEEEEEEEECCCCcEEEEEcCEEEEcc
Confidence             0000000110  0111245788999999999999999999999999866 6 999999876446666679999999999


Q ss_pred             CCChHH
Q 013476          293 GPFCDS  298 (442)
Q Consensus       293 G~~s~~  298 (442)
                      |+++..
T Consensus       217 GG~~~~  222 (660)
T 2bs2_A          217 GGYGRI  222 (660)
T ss_dssp             CCCGGG
T ss_pred             Ccchhh
Confidence            999854

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.68  E-value=3.7e-16  Score=151.39  Aligned_cols=127  Identities=16%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ..+++..+...|.+.+++.|++++++++|+++..++++ .+  |.+.. .+|+..++.||.||+|+|.++ .+.+.+|+.
T Consensus       101 ~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~-~~--v~v~~-~~g~~~~~~a~~vV~A~G~~s-~l~~~~g~~  175 (421)
T 3nix_A          101 WQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTD-SV--TTIED-INGNKREIEARFIIDASGYGR-VIPRMFGLD  175 (421)
T ss_dssp             EECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTE-EE--EEEEE-TTSCEEEEEEEEEEECCGGGC-HHHHHTTCE
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EE--EEEEc-CCCCEEEEEcCEEEECCCCch-hhHHhcCCC
Confidence            35778899999999999999999999999999988754 33  44444 456656799999999999998 777888776


Q ss_pred             CCCcccCCCeeEEEeCCCCC-----CCCceEEeeecCCCcEEEEEecCC-cEEEccCC
Q 013476          307 VQPMICPSSGVHIVLPDYYS-----PEGMGLIVPKTKDGRVVFMLPWLG-RTVAGTTD  358 (442)
Q Consensus       307 ~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~g-~~~~g~~~  358 (442)
                      .+............+.....     .......+.....+..+|++|..+ ...+|...
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~  233 (421)
T 3nix_A          176 KPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVG  233 (421)
T ss_dssp             ECCSSCCCEEEEEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEE
T ss_pred             CCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEe
Confidence            43222222222222222111     111122221122344688899754 55565543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.67  E-value=7.2e-16  Score=154.62  Aligned_cols=203  Identities=12%  Similarity=0.051  Sum_probs=113.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHH-HHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHALEERK  147 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  147 (442)
                      +.++||||||||++|+++|+.|+++|++|+||||....++.+..+.|.+.......       ..+.... +.+.+..  
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~-------~~ds~~~~~~d~~~~--   75 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNT-------HEDNWEWHMYDTVKG--   75 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSS-------SCCCHHHHHHHHHHH--
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCC-------CCCCHHHHHHHHHHh--
Confidence            34589999999999999999999999999999999755445544433322111000       0111111 1111100  


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccCCceeEEEeeC
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                           ...+         ........+...+....+++. ..|++ +......... ..++..............++.  
T Consensus        76 -----g~~~---------~d~~~v~~~~~~~~~~i~~l~-~~Gv~-f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~--  137 (588)
T 2wdq_A           76 -----SDYI---------GDQDAIEYMCKTGPEAILELE-HMGLP-FSRLDDGRIYQRPFGGQSKNFGGEQAARTAAA--  137 (588)
T ss_dssp             -----TTTC---------SCHHHHHHHHHHHHHHHHHHH-HTTCC-CCBCTTSSBCEECCTTCBSTTTCSBCCCEECS--
T ss_pred             -----cCCC---------CCHHHHHHHHHhHHHHHHHHH-HcCCC-cccCCCCcEeeeecCCccccccccCcceEEEc--
Confidence                 0000         000111111222234555654 45654 2221111000 001100000000001111111  


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      .......++..|.+.+++.|++|+++++|++|+.++++ +|+||++.+..+|+...+.||.||+|||+++...
T Consensus       138 ~d~~g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g-~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~y  209 (588)
T 2wdq_A          138 ADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDG-AVVGCTALCIETGEVVYFKARATVLATGGAGRIY  209 (588)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGS
T ss_pred             CCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCC-EEEEEEEEEcCCCeEEEEEcCEEEECCCCCcccc
Confidence            11224678899999999999999999999999986346 9999998764456666899999999999998643

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.67  E-value=7.1e-16  Score=154.83  Aligned_cols=196  Identities=11%  Similarity=0.021  Sum_probs=114.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHH-HHHHHHHHH
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLV-FHALEERKQ  148 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  148 (442)
                      .++||||||+|++||+||+.|+++|++|+||||....++.|..+.|.+......       ...++.... .+.+.    
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~-------~~~ds~~~~~~dtl~----   85 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGN-------MEDDNWRWHFYDTVK----   85 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCS-------SSCCCHHHHHHHHHH----
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCC-------CCCCCHHHHHHHHHH----
Confidence            358999999999999999999999999999999876555554444433321110       001121111 11111    


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccC-----CceeEE
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDR-----SLKGAV  222 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~-----~~~~~~  222 (442)
                         ....+         ........+...+.+..+++. ..|++ +.......+. ..++..    ..+     ......
T Consensus        86 ---~g~~l---------~d~~~v~~l~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~~~~~gg~----s~~~g~~~~~~R~~  147 (621)
T 2h88_A           86 ---GSDWL---------GDQDAIHYMTEQAPAAVIELE-NYGMP-FSRTEEGKIYQRAFGGQ----SLQFGKGGQAHRCC  147 (621)
T ss_dssp             ---HTTTC---------SCHHHHHHHHHHHHHHHHHHH-HTTCC-CCBCTTSSBCEECCTTC----BSTTTTSCBCCCEE
T ss_pred             ---hcCCC---------CCHHHHHHHHHHHHHHHHHHH-HcCCC-cccCCCCceeccccCcc----cccccCCCcceeEE
Confidence               00000         001111112222334556664 45665 2221111010 011111    000     000111


Q ss_pred             EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          223 VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       223 ~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      +.  .......++..|.+.+++.|++|+++++|++|+.++ | +|+||++.+..+|+...+.||.||+|||+++..
T Consensus       148 ~~--~d~tG~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          148 CV--ADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMEN-G-ECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             CS--TTCHHHHHHHHHHHHHTTSCCEEEETEEEEEEEEET-T-EEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             Ee--cCCCHHHHHHHHHHHHHhCCCEEEEceEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            11  111245788999999999999999999999999876 6 999999976456766789999999999999864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.67  E-value=1.2e-15  Score=152.87  Aligned_cols=194  Identities=16%  Similarity=0.170  Sum_probs=115.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchh-hhhHHhhhccCcchHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-RYLEKAVFNLDYGQLKLVFHALEERK  147 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (442)
                      +.++||+|||+|++|+++|+.|+++|++|+||||....++.+..+++.+.... .........   ...+.+.+.+....
T Consensus       124 ~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~---ds~~~~~~~~~~~g  200 (572)
T 1d4d_A          124 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIE---DKKQIMIDDTMKGG  200 (572)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCC---CCTHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCC---CCHHHHHHHHHHhc
Confidence            45689999999999999999999999999999999866666666665543221 111111011   11111212111110


Q ss_pred             HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476          148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG  227 (442)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  227 (442)
                      .      ..         ........+........+|+. ..|++ +..+.      ....       ......+.+.++
T Consensus       201 ~------~~---------~~~~~v~~~~~~~~~~i~~l~-~~Gv~-~~~~~------~~gg-------~~~~r~~~~~~~  250 (572)
T 1d4d_A          201 R------NI---------NDPELVKVLANNSSDSIDWLT-SMGAD-MTDVG------RMGG-------ASVNRSHRPTGG  250 (572)
T ss_dssp             T------TC---------SCHHHHHHHHHTHHHHHHHHH-HHTCC-CCEEE------CCTT-------CSSCCEEESTTT
T ss_pred             C------CC---------CCHHHHHHHHHccHHHHHHHH-hcCCc-ccccc------ccCC-------CcCCeeEecCCC
Confidence            0      00         000011111122234555654 33544 21110      0000       111112222233


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ......+...|.+.+++.|++|+++++|++|+.+++| +|+||++.+ .+|+...+.||.||+|||+++.
T Consensus       251 ~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g-~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          251 AGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG-KVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--C-CEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCC-eEEEEEEEe-CCCcEEEEEcCEEEEeCCCCcc
Confidence            3456788899999999999999999999999887646 999999975 4566668999999999999985

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.63  E-value=3e-15  Score=148.75  Aligned_cols=193  Identities=17%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.++||||||+|++||++|++|++ |++|+||||....+++|..+.|.+......         .++.+.   .+.+.  
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~---------~ds~~~---~~~d~--   70 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDE---------TDSIDS---HVEDT--   70 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-------------CCS---------HHHHHH---HHHHH--
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChhhcCCCEEEecCC---------CCCHHH---HHHHH--
Confidence            345999999999999999999999 999999999987666666665544322110         011111   11110  


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecC----HhhH-HhhCCccccccccCCceeEEE
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYS----AQES-AELFPTLAMKAKDRSLKGAVV  223 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~-~~~~p~~~~~~~~~~~~~~~~  223 (442)
                       ......+         +.......+...+.+..+++. ..|++ +....    .... ...++..       .....++
T Consensus        71 -l~~g~g~---------~d~~~v~~~~~~~~~~i~~l~-~~Gv~-f~~~~~~~~~g~~~~~~~gg~-------~~~r~~~  131 (540)
T 1chu_A           71 -LIAGAGI---------CDRHAVEFVASNARSCVQWLI-DQGVL-FDTHIQPNGEESYHLTREGGH-------SHRRILH  131 (540)
T ss_dssp             -HHHTTTC---------CCHHHHHHHHHHHHHHHHHHH-HTTCC------------------------------------
T ss_pred             -HHhhccc---------CCHHHHHHHHHhHHHHHHHHH-HcCCC-cccCcccCcCCcccccccccc-------ccCeEEE
Confidence             0000000         000111112222334556664 55654 22211    0000 0000000       0000011


Q ss_pred             eeCcccChHHHHHHHHHHHHH-cCceEecCeEEEEEEE-cCC-----CCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          224 YYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIK-DEA-----SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       224 ~~~~~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~-~~~-----g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .  +......++..|.+.+++ .|++|+++++|++|+. +++     + +|+||++.+..+|+...+.||.||+|||+++
T Consensus       132 ~--~d~~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~-~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          132 A--ADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTR-RVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             ------------CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSC-BEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             e--CCCCHHHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCC-EEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            1  112335677888888888 6999999999999998 432     3 7899998763456656899999999999998


Q ss_pred             HH
Q 013476          297 DS  298 (442)
Q Consensus       297 ~~  298 (442)
                      ..
T Consensus       209 ~~  210 (540)
T 1chu_A          209 KV  210 (540)
T ss_dssp             GG
T ss_pred             cc
Confidence            53

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.63  E-value=3.4e-15  Score=148.01  Aligned_cols=75  Identities=27%  Similarity=0.389  Sum_probs=63.6

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      .++...+...|.+.+++.|++++++++|++|..++ + +|++|++.+ .+|+..++.||.||+|+|.+| .+.+.+|..
T Consensus       107 ~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~-~-~v~gv~~~~-~dG~~~~i~ad~VI~AdG~~S-~vr~~lg~~  181 (512)
T 3e1t_A          107 QVERARFDDMLLRNSERKGVDVRERHEVIDVLFEG-E-RAVGVRYRN-TEGVELMAHARFIVDASGNRT-RVSQAVGER  181 (512)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET-T-EEEEEEEEC-SSSCEEEEEEEEEEECCCTTC-SSGGGTCCE
T ss_pred             EecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC-C-EEEEEEEEe-CCCCEEEEEcCEEEECCCcch-HHHHHcCCC
Confidence            46778899999999999999999999999999977 5 899999875 456556899999999999998 577766653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.61  E-value=1.8e-14  Score=143.98  Aligned_cols=75  Identities=28%  Similarity=0.302  Sum_probs=60.9

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+...|.+.+++.|++|+++++|+++++++++  |+ |++++ .+|. .+++||.||.|+|.+| .+.+.+|+..
T Consensus       144 ~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~--v~-v~~~~-~~G~-~~~~a~~vV~ADG~~S-~vR~~lGi~~  217 (570)
T 3fmw_A          144 LVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA--VE-VTVAG-PSGP-YPVRARYGVGCDGGRS-TVRRLAADRF  217 (570)
T ss_dssp             CCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC--EE-EEEEE-TTEE-EEEEESEEEECSCSSC-HHHHHTTCCC
T ss_pred             EeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe--EE-EEEEe-CCCc-EEEEeCEEEEcCCCCc-hHHHHcCCCC
Confidence            4677889999999999899999999999999988754  43 55543 2332 5899999999999999 7889998875


Q ss_pred             C
Q 013476          308 Q  308 (442)
Q Consensus       308 ~  308 (442)
                      +
T Consensus       218 ~  218 (570)
T 3fmw_A          218 P  218 (570)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.60  E-value=5.4e-14  Score=140.34  Aligned_cols=77  Identities=22%  Similarity=0.256  Sum_probs=60.6

Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEE--EEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA--RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV--~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ..++...+...|.+.+++.|++|+++++|+++++++++ ++.+|  ++.+ .++ ..+++||.||.|+|.+| .+.+.+|
T Consensus       115 ~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~-~~~~v~v~~~~-~~~-~~~i~a~~vV~AdG~~S-~vR~~lg  190 (535)
T 3ihg_A          115 AMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDD-AGAGVTARLAG-PDG-EYDLRAGYLVGADGNRS-LVRESLG  190 (535)
T ss_dssp             BCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGG-GCSEEEEEEEE-TTE-EEEEEEEEEEECCCTTC-HHHHHTT
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC-ccccEEEEEEc-CCC-eEEEEeCEEEECCCCcc-hHHHHcC
Confidence            34677888999999999999999999999999988753 33333  3433 222 46899999999999999 7899888


Q ss_pred             CCC
Q 013476          305 QNV  307 (442)
Q Consensus       305 ~~~  307 (442)
                      +..
T Consensus       191 i~~  193 (535)
T 3ihg_A          191 IGR  193 (535)
T ss_dssp             CCE
T ss_pred             CCc
Confidence            764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.60  E-value=9.5e-15  Score=146.80  Aligned_cols=192  Identities=12%  Similarity=0.072  Sum_probs=108.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC--CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHH-HHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG--LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHALEE  145 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  145 (442)
                      +.++||||||||++|+++|+.|+++|  ++|+||||.....+.+....|.+......         .+.... +.+.+. 
T Consensus         3 ~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~---------~ds~~~~~~d~~~-   72 (602)
T 1kf6_A            3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQD---------HDSFEYHFHDTVA-   72 (602)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCST---------TCCHHHHHHHHHH-
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCC---------CCCHHHHHHHHHH-
Confidence            34589999999999999999999999  99999999864433333332222211100         011111 011110 


Q ss_pred             HHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhH-HhhCCccccccccCCceeEEEe
Q 013476          146 RKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQES-AELFPTLAMKAKDRSLKGAVVY  224 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~  224 (442)
                            ....+         ........+...+....+++. ..|++ +.......+ ...++.       ......++.
T Consensus        73 ------~g~~~---------~d~~~v~~~~~~~~~~i~~L~-~~Gv~-f~~~~~g~~~~~~~gg-------~~~~r~~~~  128 (602)
T 1kf6_A           73 ------GGDWL---------CEQDVVDYFVHHCPTEMTQLE-LWGCP-WSRRPDGSVNVRRFGG-------MKIERTWFA  128 (602)
T ss_dssp             ------HTTTC---------SCHHHHHHHHHHHHHHHHHHH-HTTCC-CCBCTTSSBCCBCCTT-------CSSCCEECS
T ss_pred             ------hcCCC---------CCHHHHHHHHHHHHHHHHHHH-HcCCC-cccCCCCcccccccCC-------ccCCeEEEc
Confidence                  00000         000001111222234455554 45554 221110000 000000       001111111


Q ss_pred             eCcccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          225 YDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       225 ~~~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                        .......++..|.+.+++.| ++|+++++|++|+.++ + +|+||.+.+..+|+...+.||.||+|||+++..
T Consensus       129 --~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~-g-~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          129 --ADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD-G-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEET-T-EEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             --CCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC-C-EEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence              11123578889999998888 9999999999999876 5 999998875446665689999999999999964

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.60  E-value=8.7e-14  Score=137.12  Aligned_cols=119  Identities=17%  Similarity=0.079  Sum_probs=77.0

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+...|.+.+++.|++|+++++|+++.++++  .|+ |++.+ .+| ..+++||+||.|+|.+| .+.+.+|+..
T Consensus       103 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~-~~g-~~~~~a~~vVgADG~~S-~VR~~lg~~~  176 (499)
T 2qa2_A          103 AVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGD--HVV-VEVEG-PDG-PRSLTTRYVVGCDGGRS-TVRKAAGFDF  176 (499)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSS--CEE-EEEEC-SSC-EEEEEEEEEEECCCTTC-HHHHHTTCCC
T ss_pred             ecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EEE-EEEEc-CCC-cEEEEeCEEEEccCccc-HHHHHcCCCC
Confidence            355678888999999999999999999999999875  444 55654 334 35799999999999999 5888888765


Q ss_pred             CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEEc
Q 013476          308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAG  355 (442)
Q Consensus       308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~g  355 (442)
                      +..-.........++....+..  ..+...++ ..++++|.. +.+.+.
T Consensus       177 ~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~-g~~~~~P~~~g~~~~~  222 (499)
T 2qa2_A          177 PGTSASREMFLADIRGCEITPR--PIGETVPL-GMVMSAPLGDGVDRII  222 (499)
T ss_dssp             CEECCCCCEEEEEEESCCCCCE--EEEEEETT-EEEEEEECSSSCEEEE
T ss_pred             CCCCCccEEEEEEEEECCCCcc--eEEEECCC-eEEEEEEcCCCEEEEE
Confidence            3222222333333332222221  22221333 457788864 444444

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.60  E-value=8.1e-14  Score=137.38  Aligned_cols=73  Identities=29%  Similarity=0.285  Sum_probs=59.3

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      ++...+...|.+.+++.|++|+++++|+++.++++  .|+ |++.+ .+| ..+++||+||.|+|.+| .+.+.+|+..
T Consensus       103 i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~-~~g-~~~~~a~~vVgADG~~S-~VR~~lg~~~  175 (500)
T 2qa1_A          103 VPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA--GVT-VEVRG-PEG-KHTLRAAYLVGCDGGRS-SVRKAAGFDF  175 (500)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT--EEE-EEEEE-TTE-EEEEEESEEEECCCTTC-HHHHHTTCCC
T ss_pred             cCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC--eEE-EEEEc-CCC-CEEEEeCEEEECCCcch-HHHHHcCCCc
Confidence            45567888999999999999999999999999875  554 66655 333 35799999999999999 5888888765

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.60  E-value=7.8e-15  Score=148.21  Aligned_cols=66  Identities=23%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHc--CceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAALA--GAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~--Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...+...|.+.+++.  |++|+.++.|++|+.+++  | +|+||.+.+..+|+...+.||.||+|||+++.
T Consensus       165 G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          165 GESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPN-RIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             ETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTT-BEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccc-eEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence            356778888888887  999999999999998875  6 99999987655677778999999999999885

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.60  E-value=1.1e-14  Score=141.76  Aligned_cols=71  Identities=13%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSV  299 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l  299 (442)
                      ....+...|.+.+++.|++|+++++|++|..++ + +|++|++.   +|+  .++||.||+|||+++          ..+
T Consensus       132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~-~v~~V~~~---~G~--~i~Ad~VVlAtGg~s~~~~g~tG~g~~l  204 (447)
T 2i0z_A          132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-G-QTKAVILQ---TGE--VLETNHVVIAVGGKSVPQTGSTGDGYAW  204 (447)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEET---TCC--EEECSCEEECCCCSSSGGGSCSSHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-C-cEEEEEEC---CCC--EEECCEEEECCCCCcCCCCCCCcHHHHH
Confidence            346788999999999999999999999999876 5 88888763   443  699999999999999          578


Q ss_pred             hhhhCCCC
Q 013476          300 RKLADQNV  307 (442)
Q Consensus       300 ~~~~g~~~  307 (442)
                      ++.+|+.+
T Consensus       205 a~~~G~~~  212 (447)
T 2i0z_A          205 AEKAGHTI  212 (447)
T ss_dssp             HHHTTCCE
T ss_pred             HHHCCCCc
Confidence            88888763

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.59  E-value=6.3e-14  Score=136.86  Aligned_cols=76  Identities=24%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      .++...+...|.+.+.+.|++++++++|+++..++ + +|+||++.+..+|+...+.||.||.|+|.+| .+.+.++..
T Consensus        96 ~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~-~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s-~vr~~l~~~  171 (453)
T 3atr_A           96 ELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED-G-YVKGAVLFNRRTNEELTVYSKVVVEATGYSR-SFRSKLPPE  171 (453)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-T-EEEEEEEEETTTTEEEEEECSEEEECCGGGC-TTGGGSCTT
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC-C-EEEEEEEEEcCCCceEEEEcCEEEECcCCch-hhHHhcCCC
Confidence            56778899999999999999999999999999877 4 8988888751155556899999999999998 477777654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.58  E-value=1e-14  Score=145.99  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ..+++..+...|.+.+++.|++++++++|+++..++ + .+++|++.+  +|...++.||.||.|+|.+| .+.+.+++.
T Consensus       123 ~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~-g-~~~~V~~~~--~G~~~~i~AdlVV~AdG~~S-~lr~~lg~~  197 (591)
T 3i3l_A          123 VQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSD-P-DRVVLTVRR--GGESVTVESDFVIDAGGSGG-PISRKLGVR  197 (591)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCS-T-TCEEEEEEE--TTEEEEEEESEEEECCGGGC-HHHHHHTCE
T ss_pred             EEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-C-CEEEEEEec--CCceEEEEcCEEEECCCCcc-hhHHHcCCC
Confidence            356788899999999999999999999999999874 4 667777764  45446899999999999988 577777765

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.56  E-value=4.7e-14  Score=143.10  Aligned_cols=191  Identities=21%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHH---H-CCCeEEEEeccCCCCCCccCCCCcccchhhh--hHHhhhccCcchHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAA---T-RGLRVGLVEREDFSSGTSSRSTKLIHGGVRY--LEKAVFNLDYGQLKLVFHA  142 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La---~-~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~  142 (442)
                      +.++||||||||++||+||+.|+   + +|++|+||||....++ +..+.|....+...  .....   .....+...+.
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s-~~~a~G~~~~~~~~~~~~~~g---~~ds~~~~~~~   95 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS-GAVAQGLSAINTYIDLTGRSE---RQNTLEDYVRY   95 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC-STTTTCEEEESCCCCSSSSBS---CCCCHHHHHHH
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCC-cceecccccccchhhHHHhcC---CCCCHHHHHHH
Confidence            34599999999999999999999   6 8999999999975432 22333332111000  00000   01121221111


Q ss_pred             HHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEE
Q 013476          143 LEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAV  222 (442)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  222 (442)
                      ....      ...+         +.......+...+.+..+++. ..|++ +.... ..      .+    .......  
T Consensus        96 ~~~~------g~~l---------~d~~~v~~~~~~~~~~i~~l~-~~Gv~-f~~~~-~g------~~----~~~~~~~--  145 (643)
T 1jnr_A           96 VTLD------MMGL---------AREDLVADYARHVDGTVHLFE-KWGLP-IWKTP-DG------KY----VREGQWQ--  145 (643)
T ss_dssp             HHHH------TTTC---------CCHHHHHHHHHHHHHHHHHHH-HTTCC-BCBCT-TS------CB----CBSSSSC--
T ss_pred             HHHH------hcCc---------CcHHHHHHHHHHHHHHHHHHH-HcCCc-ceeCC-CC------Cc----cCCCccc--
Confidence            1110      0000         001111112222334556664 45665 21110 00      00    0000000  


Q ss_pred             EeeCcccChHHHHHHHHHHHHHc-Cc-eEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          223 VYYDGQMNDSRLNVGLALTAALA-GA-AVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       223 ~~~~~~~~~~~l~~~l~~~~~~~-Gv-~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                          ..+++..+...|.+.+++. |+ +|+++++|++|+.+++  | +|+||++.+..+|+...+.||.||+|||+++..
T Consensus       146 ----~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g-~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~  220 (643)
T 1jnr_A          146 ----IMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPN-AVAGAVGFSVREPKFYVFKAKAVILATGGATLL  220 (643)
T ss_dssp             ----EEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTT-BEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             ----cCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccc-eeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence                0122345677888888887 99 9999999999998764  5 899998865456666689999999999999853

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.55  E-value=1.2e-14  Score=139.65  Aligned_cols=69  Identities=10%  Similarity=-0.009  Sum_probs=54.8

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DS  298 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~  298 (442)
                      .....+.+.|.+.+++.|++|+++++|++|..+++  .+ .|..   .+  . .+.||.||+|||+++          ..
T Consensus       129 ~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~---~~--g-~i~ad~VIlAtG~~S~p~~gs~g~g~~  199 (417)
T 3v76_A          129 HSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS--GF-RVTT---SA--G-TVDAASLVVASGGKSIPKMGATGLAYR  199 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT--EE-EEEE---TT--E-EEEESEEEECCCCSSCGGGTCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--EE-EEEE---CC--c-EEEeeEEEECCCCccCCCCCCCcHHHH
Confidence            44578889999999999999999999999998774  32 2333   22  2 799999999999998          46


Q ss_pred             HhhhhCCC
Q 013476          299 VRKLADQN  306 (442)
Q Consensus       299 l~~~~g~~  306 (442)
                      +++.+|..
T Consensus       200 la~~~G~~  207 (417)
T 3v76_A          200 IAEQFGLP  207 (417)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHCCCC
Confidence            77778765

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.55  E-value=1.6e-14  Score=143.40  Aligned_cols=163  Identities=13%  Similarity=0.090  Sum_probs=95.4

Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ..+++..+...|.+.+++.|++++++ +|+++..++++ .+++|++.   +|+  ++.||.||.|+|.+|..+.+.+|..
T Consensus       168 ~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~-~~~~v~~~---~g~--~~~ad~vV~A~G~~S~~~~~~~g~~  240 (511)
T 2weu_A          168 YHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERG-WISGVHTK---QHG--EISGDLFVDCTGFRGLLINQTLGGR  240 (511)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTS-CEEEEEES---SSC--EEECSEEEECCGGGCCCCCCCTCCC
T ss_pred             EEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCC-CEEEEEEC---CCC--EEEcCEEEECCCcchHHHHHHhCCC
Confidence            35788899999999999999999999 99999987666 77777663   443  7999999999999995445566654


Q ss_pred             CC--CcccCCCe-eEEEeCCCCC--CCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHH-HHHHHH
Q 013476          307 VQ--PMICPSSG-VHIVLPDYYS--PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEI-QFILDA  380 (442)
Q Consensus       307 ~~--~~~~~~~g-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  380 (442)
                      ..  ....+... ..+.++....  .... ......+ +..+|++|..++..+|.....     + ..+++.. +.+.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~P~~~~~~~g~~~~~-----~-~~~~~~~~~~l~~~  312 (511)
T 2weu_A          241 FQSFSDVLPNNRAVALRVPRENDEDMRPY-TTATAMS-AGWMWTIPLFKRDGNGYVYSD-----E-FISPEEAERELRST  312 (511)
T ss_dssp             EEECTTTCCCCEEEEEEEECSSGGGCCSS-EEEEEET-TEEEEEEECSSEEEEEEEECT-----T-TSCHHHHHHHHHHH
T ss_pred             CccccccCcccceEEEEeccCCCCCCCcc-eeceecC-CCcEEEEECCCceEEEEEECC-----C-CCCHHHHHHHHHHH
Confidence            21  11233332 2222322111  1111 1111122 346888998766655543321     1 1233333 333333


Q ss_pred             hhhhcCCCCCCCCeeeeeeecccccc
Q 013476          381 ISDYLNVKVRRTDVLSAWSGIRPLAM  406 (442)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~~G~r~~t~  406 (442)
                      + ... |.+....+...|.|.++...
T Consensus       313 ~-~~~-~~~~~~~~~~~~~~~~~~~~  336 (511)
T 2weu_A          313 V-APG-RDDLEANHIQMRIGRNERTW  336 (511)
T ss_dssp             H-CTT-CTTSCCEEEECCCEEESCSE
T ss_pred             h-Ccc-cccccceeEEeecccccccc
Confidence            3 222 33444455666777776554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.53  E-value=2.5e-13  Score=130.78  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh-CCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA-DQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~-g~~  306 (442)
                      .++...+...|.+.+.+  ++|+++++|++++.+++  .|+ |++   .+|+  ++.||.||.|+|.+| .+.+.+ +..
T Consensus       123 ~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~--~v~-v~~---~~g~--~~~a~~vV~AdG~~S-~vr~~l~~~~  191 (407)
T 3rp8_A          123 PVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD--GVT-VWF---TDGS--SASGDLLIAADGSHS-ALRPWVLGFT  191 (407)
T ss_dssp             EEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT--EEE-EEE---TTSC--EEEESEEEECCCTTC-SSHHHHHSSC
T ss_pred             EEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC--cEE-EEE---cCCC--EEeeCEEEECCCcCh-HHHHHhcCCC
Confidence            35667888888888876  89999999999998875  432 333   3444  799999999999999 466655 654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.52  E-value=1.9e-13  Score=137.18  Aligned_cols=78  Identities=18%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCCce-------EEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKE-------FDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g~~-------~~i~a~~VVlAtG~~s~  297 (442)
                      .++...+...|.+.+++.|++|+++++|++|..+++| +|+||++.+.   .+|+.       ..++||.||+|+|.+|.
T Consensus       140 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g-~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          140 VVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDG-SVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTS-SEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             EEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCC-CEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            3566788999999999999999999999999998767 8888887520   13421       47999999999999984


Q ss_pred             ---HHhhhhCCC
Q 013476          298 ---SVRKLADQN  306 (442)
Q Consensus       298 ---~l~~~~g~~  306 (442)
                         .|.+.+|+.
T Consensus       219 vr~~l~~~~gl~  230 (584)
T 2gmh_A          219 LAKQLYKKFDLR  230 (584)
T ss_dssp             HHHHHHHHTTTT
T ss_pred             HHHHHHHHhCCC
Confidence               333334654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.51  E-value=1.1e-12  Score=127.13  Aligned_cols=57  Identities=14%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.|.+.++++|++|+++++|++|..++ + ++++|.+    +|  ..+.||.||+|++.+.
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~-~~~gv~~----~g--~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIEN-G-KAAGIIA----DD--RIHDADLVISNLGHAA  252 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEE----TT--EEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEEC-C-EEEEEEE----CC--EEEECCEEEECCCHHH
Confidence            6789999999999999999999999999887 5 8888865    23  4799999999999875

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.50  E-value=5.6e-13  Score=130.40  Aligned_cols=176  Identities=13%  Similarity=0.100  Sum_probs=102.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHH-HHHHHHHHHHHHH
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHALEERKQVIR  151 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  151 (442)
                      ||||||+|++|+++|++|+++|++|+||||. ..++++..+.|.+......         ...... +.+.+.. .    
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~---------~d~~~~~~~d~l~~-g----   65 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGS---------DDSPELHAQDTIRV-G----   65 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCST---------TCCHHHHHHHHHHH-H----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCC---------CCCHHHHHHHHHHh-c----
Confidence            8999999999999999999999999999999 5556666555544322110         011111 1111110 0    


Q ss_pred             hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccCh
Q 013476          152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND  231 (442)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  231 (442)
                      .  .+         .................+++. ..|++ +...     ...++..       ......+.  +....
T Consensus        66 ~--~~---------~d~~~v~~~~~~~~~~i~~l~-~~Gv~-~~~~-----~~~~~g~-------~~~r~~~~--~d~~g  118 (472)
T 2e5v_A           66 D--GL---------CDVKTVNYVTSEAKNVIETFE-SWGFE-FEED-----LRLEGGH-------TKRRVLHR--TDETG  118 (472)
T ss_dssp             T--TC---------SCHHHHHHHHHHHHHHHHHHH-HTTCC-CCSS-----CBCCTTC-------SSCCEECS--SSCHH
T ss_pred             C--Cc---------CCHHHHHHHHHHHHHHHHHHH-HcCCC-CCcc-----cccccCc-------CcCcEEEe--CCCCH
Confidence            0  00         000001111112223445553 45554 2110     0011111       01111111  22345


Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+...|.+.+++.|++++++++| +|..++ + +|.||++.+    ....+.||.||+|||+++.
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~-~-~v~Gv~v~~----~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKD-G-KVTGFVTEK----RGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEET-T-EEEEEEETT----TEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeC-C-EEEEEEEEe----CCCeEEeeeEEECCCCCcc
Confidence            678889999888889999999999 998876 5 899988742    2235779999999999985

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.49  E-value=2.8e-13  Score=134.67  Aligned_cols=63  Identities=21%  Similarity=0.273  Sum_probs=50.6

Q ss_pred             HHHHcCceEecCeEEEEEEEcC---CCCeEEEEEEEECCCCceEEEEcC-EEEEccCCC-hHHHhhhhCC
Q 013476          241 TAALAGAAVLNHAEVISLIKDE---ASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPF-CDSVRKLADQ  305 (442)
Q Consensus       241 ~~~~~Gv~i~~~~~v~~l~~~~---~g~~v~gV~~~~~~~g~~~~i~a~-~VVlAtG~~-s~~l~~~~g~  305 (442)
                      .+.+.|++|++++.|++|..+.   ++ +++||++.+ .+|+..+++|+ -||||+|++ |++|+.+.|+
T Consensus       236 ~~~r~NL~V~t~a~V~rIl~d~~~~~~-ra~GV~~~~-~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI  303 (583)
T 3qvp_A          236 NYQRPNLQVLTGQYVGKVLLSQNGTTP-RAVGVEFGT-HKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  303 (583)
T ss_dssp             TTTCTTEEEECSCEEEEEEEECSSSSC-EEEEEEEES-STTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             hhcCCCcEEEcCCEEEEEEeccCCCCC-EEEEEEEEe-cCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence            3345699999999999999873   35 999999974 36677789995 799999996 6788776665

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.48  E-value=1.7e-13  Score=131.18  Aligned_cols=69  Identities=17%  Similarity=0.129  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEc----CCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh---------
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKD----EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC---------  296 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~----~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s---------  296 (442)
                      ++..+...|.+.+++.|++++++++|+++..+    ++  ++ .|..   .+  . .++||.||+|||+++         
T Consensus       107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~--~~-~v~~---~~--g-~i~ad~VVlAtG~~s~p~~g~~G~  177 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKV--RF-VLQV---NS--T-QWQCKNLIVATGGLSMPGLGATPF  177 (401)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSC--CE-EEEE---TT--E-EEEESEEEECCCCSSCGGGTCCSH
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCC--eE-EEEE---CC--C-EEECCEEEECCCCccCCCCCCChH
Confidence            56788899999999999999999999999976    43  32 2332   22  2 799999999999998         


Q ss_pred             -HHHhhhhCCCC
Q 013476          297 -DSVRKLADQNV  307 (442)
Q Consensus       297 -~~l~~~~g~~~  307 (442)
                       ..+++.+|...
T Consensus       178 g~~la~~~G~~i  189 (401)
T 2gqf_A          178 GYQIAEQFGIPV  189 (401)
T ss_dssp             HHHHHHHTTCCE
T ss_pred             HHHHHHHCCCCc
Confidence             36777777663

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.46  E-value=7e-13  Score=131.33  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.++|.+.++++|++|+++++|++|+.++ + +++||++.   +|+  ++.||.||.+++.+.
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~-~-~~~gV~~~---~g~--~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTG-N-KIEAVHLE---DGR--RFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEET---TSC--EEECSCEEECCC---
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeC-C-eEEEEEec---CCc--EEEcCEEEECCCHHH
Confidence            5789999999999999999999999999988 5 99999884   444  799999999998754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.45  E-value=2.9e-12  Score=116.90  Aligned_cols=83  Identities=13%  Similarity=0.005  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEEC---------CCCceEEEEcCEEEEccCCCh----
Q 013476          231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNN---------LSGKEFDTYAKVVVNAAGPFC----  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---------~~g~~~~i~a~~VVlAtG~~s----  296 (442)
                      ...+...|.+.+.+ .|++++++++|+++..++ + ++.+|.+...         .+++...+.||.||+|+|..+    
T Consensus       118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~-~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~  195 (284)
T 1rp0_A          118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-N-RVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGA  195 (284)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET-T-EEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-C-eEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHH
Confidence            45677788887766 699999999999999876 4 8989988520         113346899999999999654    


Q ss_pred             --HHHhhhhCCCCCCcccCCCee
Q 013476          297 --DSVRKLADQNVQPMICPSSGV  317 (442)
Q Consensus       297 --~~l~~~~g~~~~~~~~~~~g~  317 (442)
                        ..++..++..  .++.|.+|.
T Consensus       196 ~~~~~~~~~g~~--~~v~~~~g~  216 (284)
T 1rp0_A          196 TGVKRLKSIGMI--DHVPGMKAL  216 (284)
T ss_dssp             HHHHHHHHTTSS--SCCCCCEEE
T ss_pred             HHHHHhhhccCC--CCcCCcCCc
Confidence              3444333433  356666663

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.44  E-value=2.5e-12  Score=128.25  Aligned_cols=74  Identities=12%  Similarity=0.057  Sum_probs=59.0

Q ss_pred             CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      ...+++..+...|.+.+++.|++++++ +|+++..++++ .+++|++   .+|.  .+.||.||+|+|.+|..+.+.+|.
T Consensus       159 ~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g-~~~~v~~---~~g~--~i~ad~vV~A~G~~s~~~~~~lg~  231 (538)
T 2aqj_A          159 AWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRG-YISNLLT---KEGR--TLEADLFIDCSGMRGLLINQALKE  231 (538)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTS-CEEEEEE---TTSC--EECCSEEEECCGGGCCCCCCCTCC
T ss_pred             cEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCC-cEEEEEE---CCCc--EEEeCEEEECCCCchhhHHHHhCC
Confidence            346788999999999999999999999 89999987666 6666665   3443  789999999999999644555665


Q ss_pred             C
Q 013476          306 N  306 (442)
Q Consensus       306 ~  306 (442)
                      .
T Consensus       232 ~  232 (538)
T 2aqj_A          232 P  232 (538)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.44  E-value=2.3e-12  Score=127.07  Aligned_cols=73  Identities=16%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH---Hhhhh
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS---VRKLA  303 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~---l~~~~  303 (442)
                      +......+...|.+.+++.|++|+++++|++|..++ + ++++|++.   +|+  .+.||.||+|+|.++.+   ++...
T Consensus       215 G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~-~-~v~gV~l~---~G~--~i~Ad~VVlA~G~~s~~~~~~l~~~  287 (549)
T 3nlc_A          215 GTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED-G-QITGVTLS---NGE--EIKSRHVVLAVGHSARDTFEMLHER  287 (549)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESS-S-BEEEEEET---TSC--EEECSCEEECCCTTCHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC-C-EEEEEEEC---CCC--EEECCEEEECCCCChhhHHHHHHHc
Confidence            344557788899999999999999999999999877 4 78888773   443  79999999999999963   45555


Q ss_pred             CCC
Q 013476          304 DQN  306 (442)
Q Consensus       304 g~~  306 (442)
                      |+.
T Consensus       288 Gi~  290 (549)
T 3nlc_A          288 GVY  290 (549)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.42  E-value=2e-12  Score=131.38  Aligned_cols=78  Identities=14%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             ccChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcCC--CCeEEEEEEEEC---CCCceEEEEcCEEEEccCCChHHHh
Q 013476          228 QMNDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEA--SNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVR  300 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~~--g~~v~gV~~~~~---~~g~~~~i~a~~VVlAtG~~s~~l~  300 (442)
                      .++...+...|.+.+++.|+  +|+++++|+++.++++  + ..+.|++++.   .+|...+++||+||.|+|.+| .+.
T Consensus       137 ~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~-~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S-~vR  214 (639)
T 2dkh_A          137 ILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAAD-YPVTVTLERCDAAHAGQIETVQARYVVGCDGARS-NVR  214 (639)
T ss_dssp             ECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSS-CCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC-HHH
T ss_pred             eeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCc-CCEEEEEEeccccCCCCeEEEEeCEEEECCCcch-HHH
Confidence            35667888999999999987  9999999999998763  2 2233555530   145556899999999999999 588


Q ss_pred             hhhCCCC
Q 013476          301 KLADQNV  307 (442)
Q Consensus       301 ~~~g~~~  307 (442)
                      +.+|+..
T Consensus       215 ~~lg~~~  221 (639)
T 2dkh_A          215 RAIGRQL  221 (639)
T ss_dssp             HHTTCCC
T ss_pred             HHhCCCC
Confidence            8888764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.39  E-value=6.5e-12  Score=125.44  Aligned_cols=72  Identities=17%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      .+++..+...|.+.+++. |++++++ +|++|..++++ .+++|++   .+|  .++.||.||+|+|.+|..+.+.+|..
T Consensus       190 ~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g-~~~~v~~---~~G--~~i~ad~vI~A~G~~S~~~~~~lg~~  262 (550)
T 2e4g_A          190 HFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANG-NIESVRT---ATG--RVFDADLFVDCSGFRGLLINKAMEEP  262 (550)
T ss_dssp             EECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTS-CEEEEEE---TTS--CEEECSEEEECCGGGCCCCCCCTCCC
T ss_pred             EEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCC-CEEEEEE---CCC--CEEECCEEEECCCCchhhHHHHhCCC
Confidence            478889999999999998 9999999 99999987666 7777766   344  37999999999999995446666654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.38  E-value=2.7e-12  Score=123.27  Aligned_cols=72  Identities=21%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEE-EEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRII-GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~-gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      .++...+...|.+.+++. |++++++++|++++.+++  .++ .|++   .+|+  ++.||.||+|+|.+|. +.+.+|+
T Consensus       103 ~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~g~v~~---~~g~--~~~ad~vV~AdG~~s~-vr~~lg~  174 (399)
T 2x3n_A          103 LMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER--HAIDQVRL---NDGR--VLRPRVVVGADGIASY-VRRRLLD  174 (399)
T ss_dssp             ECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT--SCEEEEEE---TTSC--EEEEEEEEECCCTTCH-HHHHTSC
T ss_pred             cccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC--ceEEEEEE---CCCC--EEECCEEEECCCCChH-HHHHhCC
Confidence            467788999999999988 999999999999998875  443 3444   3444  7899999999999995 8888876


Q ss_pred             CC
Q 013476          306 NV  307 (442)
Q Consensus       306 ~~  307 (442)
                      ..
T Consensus       175 ~~  176 (399)
T 2x3n_A          175 ID  176 (399)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.37  E-value=3e-12  Score=126.77  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=49.8

Q ss_pred             ccChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          228 QMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .++...+...|.+.+++ .|++| ++++|++|..++ + +|+||++.   +|  ..+.||.||+|||.++
T Consensus       119 ~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~-g-~V~GV~t~---dG--~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          119 QADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKN-N-QVVGVRTN---LG--VEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESS-S-BEEEEEET---TS--CEEECSEEEECCTTCB
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC-C-EEEEEEEC---CC--cEEEeCEEEEccCCCc
Confidence            45667788889888888 59999 578999998876 4 89888873   44  3799999999999875

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.37  E-value=4.4e-13  Score=133.41  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=48.4

Q ss_pred             HHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEc-CEEEEccCCC-hHHHhhhhCC
Q 013476          243 ALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPF-CDSVRKLADQ  305 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~-s~~l~~~~g~  305 (442)
                      .+.|++|++++.|++|..+. ++ +++||++.. .+|+..+++| |.||||+|++ ++.|+...|+
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~-~a~GV~~~~-~~g~~~~v~A~keVILsaGa~~sp~lL~~SGI  280 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADR-TCKGVTVVT-AAGNELNFFADREVILSQGVFETPKLLMLSGI  280 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTT-EEEEEEEEE-TTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCC-EEEEEEEEe-CCCcEEEEEeeeEEEEcccccCChHHHHHcCC
Confidence            34689999999999999983 35 999999986 4467778999 6799999996 5566655543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.36  E-value=2.5e-12  Score=127.86  Aligned_cols=61  Identities=23%  Similarity=0.289  Sum_probs=50.0

Q ss_pred             ccChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          228 QMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+++..+...|.+.+++ .|+++ ++++|++|..++ + +|++|++.   +|  ..+.||.||+|||.++
T Consensus       120 ~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~-g-~V~GV~t~---dG--~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          120 QADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVEN-D-RVVGAVTQ---MG--LKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESS-S-BEEEEEET---TS--EEEEEEEEEECCSTTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecC-C-EEEEEEEC---CC--CEEECCEEEEcCCCCc
Confidence            45667788889888888 69999 578999998876 4 88888773   44  4799999999999975

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.35  E-value=1.1e-11  Score=126.24  Aligned_cols=78  Identities=14%  Similarity=0.091  Sum_probs=58.6

Q ss_pred             ccChHHHHHHHHHHHHHcC---ceEecCeEEEEEEEcC------CCCeEEEEEEEEC-----------------------
Q 013476          228 QMNDSRLNVGLALTAALAG---AAVLNHAEVISLIKDE------ASNRIIGARIRNN-----------------------  275 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~G---v~i~~~~~v~~l~~~~------~g~~v~gV~~~~~-----------------------  275 (442)
                      .++...+...|.+.+++.|   ++++++++++++..++      ++..| .|++.+.                       
T Consensus       115 ~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (665)
T 1pn0_A          115 VLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPV-TMTLRYMSEDESTPLQFGHKTENGLFRSNL  193 (665)
T ss_dssp             ECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCE-EEEEEECCGGGSCCCTTCCCCCSSSCCCHH
T ss_pred             EeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCE-EEEEEecccccccccccccccccccccccc
Confidence            3566778888999998887   8999999999999875      11133 3445431                       


Q ss_pred             ----------------CCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          276 ----------------LSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       276 ----------------~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                                      .+|...+++||+||.|.|.+| .+++.+|+..
T Consensus       194 ~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S-~VR~~lg~~~  240 (665)
T 1pn0_A          194 QTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHS-WVRRTLGFEM  240 (665)
T ss_dssp             HHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTC-HHHHHHTCCC
T ss_pred             cccccccccccccccCCCCceEEEEeCEEEeccCCCC-HHHHhcCCCC
Confidence                            135456899999999999999 6888888764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.35  E-value=3.4e-12  Score=122.36  Aligned_cols=72  Identities=13%  Similarity=0.130  Sum_probs=54.3

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +...+...|.+.+.+.|++++++++|+++..++++ .+ .|+++.  +|+..+++||.||.|+|.+|. +.+.++..
T Consensus       101 ~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~-~~-~v~~~~--~g~~~~~~a~~vV~AdG~~S~-vr~~l~~~  172 (394)
T 1k0i_A          101 GQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGE-RP-YVTFER--DGERLRLDCDYIAGCDGFHGI-SRQSIPAE  172 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSS-SC-EEEEEE--TTEEEEEECSEEEECCCTTCS-TGGGSCGG
T ss_pred             chHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCC-ce-EEEEec--CCcEEEEEeCEEEECCCCCcH-HHHhcCcc
Confidence            44667788888888889999999999999886432 22 355532  454447999999999999994 77776543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.33  E-value=1.4e-11  Score=123.04  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=56.3

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      .++...+...|.+.+++.   |+++++|++++++++  .|+ |++.+..+|+..+++||+||.|+|.+|. +.+.+|+..
T Consensus       134 ~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~--~v~-v~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~~lg~~~  206 (549)
T 2r0c_A          134 ICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDD--HVR-ATITDLRTGATRAVHARYLVACDGASSP-TRKALGIDA  206 (549)
T ss_dssp             ECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSS--CEE-EEEEETTTCCEEEEEEEEEEECCCTTCH-HHHHHTCCC
T ss_pred             ccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCC--EEE-EEEEECCCCCEEEEEeCEEEECCCCCcH-HHHHcCCCC
Confidence            345567778888888776   899999999999875  454 5555423455568999999999999994 888888764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.32  E-value=6.1e-11  Score=109.11  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCC-----------------CCeEEEEEEEEC---CCC------ceEEE
Q 013476          231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEA-----------------SNRIIGARIRNN---LSG------KEFDT  283 (442)
Q Consensus       231 ~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~-----------------g~~v~gV~~~~~---~~g------~~~~i  283 (442)
                      ...+...|.+.+++ .|+++++++.+++|..+++                 +.+|.||++...   ..+      ...+|
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            35677888888888 4999999999999987652                 128899988521   112      34689


Q ss_pred             EcCEEEEccCCChH
Q 013476          284 YAKVVVNAAGPFCD  297 (442)
Q Consensus       284 ~a~~VVlAtG~~s~  297 (442)
                      +||.||+|||..+.
T Consensus       239 ~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          239 NAPVIISTTGHDGP  252 (344)
T ss_dssp             ECSEEEECCCSSSS
T ss_pred             EcCEEEECCCCCch
Confidence            99999999999874

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.32  E-value=4.3e-11  Score=113.99  Aligned_cols=66  Identities=23%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      .++...+...|.+.+++.|++++++++|+++..  ++ .   |++   .+|+  ++.||.||.|+|.+| .+.+.++.
T Consensus       103 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~---v~~---~~g~--~~~ad~vV~AdG~~s-~vr~~l~~  168 (379)
T 3alj_A          103 IMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG-R---LTL---QTGE--VLEADLIVGADGVGS-KVRDSIGF  168 (379)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-E---EEE---TTSC--EEECSEEEECCCTTC-HHHHHHCC
T ss_pred             EECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-E---EEE---CCCC--EEEcCEEEECCCccH-HHHHHhcC
Confidence            456678899999999999999999999999987  33 2   444   3443  799999999999999 57777765

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.31  E-value=9.7e-12  Score=123.55  Aligned_cols=62  Identities=19%  Similarity=0.336  Sum_probs=49.6

Q ss_pred             ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .++...+...|.+.+++. |++++ +.+|+.|..++ + +|.||.+.   +|.  .+.||.||+|||.++.
T Consensus       113 ~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~-g-~V~GV~t~---~G~--~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          113 QADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANS-G-KFSSVTVR---SGR--AIQAKAAILACGTFLN  175 (641)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-T-EEEEEEET---TSC--EEEEEEEEECCTTCBT
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecC-C-EEEEEEEC---CCc--EEEeCEEEECcCCCCC
Confidence            456678888888888875 99995 56899998876 4 89888763   443  7999999999999864

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=99.30  E-value=5.6e-12  Score=125.17  Aligned_cols=62  Identities=21%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             HHHcCceEecCeEEEEEEEc----CCCCeEEEEEEEECCCC-ceEEEEc-CEEEEccCCC-hHHHhhhhCC
Q 013476          242 AALAGAAVLNHAEVISLIKD----EASNRIIGARIRNNLSG-KEFDTYA-KVVVNAAGPF-CDSVRKLADQ  305 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~----~~g~~v~gV~~~~~~~g-~~~~i~a-~~VVlAtG~~-s~~l~~~~g~  305 (442)
                      ..+.+++|+.++.|++|..+    +++ +++||++.. .+| +..+++| |-||||+|++ |++|+.+.|+
T Consensus       218 ~~r~NL~Vlt~a~V~rIl~~~~~~g~~-rA~GVe~~~-~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGI  286 (566)
T 3fim_B          218 QSRPNLSVLINAQVTKLVNSGTTNGLP-AFRCVEYAE-QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGI  286 (566)
T ss_dssp             TTCTTEEEESSCEEEEEECCEEETTEE-ECCEEEEES-STTSCCEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             ccCCCeEEECCCEEEEEEeecCCCCCC-EEEEEEEEE-CCCceEEEEEeeeEEEEecCCcCChHHHHhcCC
Confidence            34569999999999999987    325 899999975 334 5678899 7899999985 6788776654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.29  E-value=2.5e-11  Score=120.65  Aligned_cols=73  Identities=10%  Similarity=0.115  Sum_probs=57.3

Q ss_pred             cccChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          227 GQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      ..+++..+...|.+.+++ .|++++++ +|+++..++++ .+++|+.   .+|.  .+.||.||.|+|.+|.-+.+.+|+
T Consensus       170 ~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g-~~~~v~~---~~g~--~i~ad~vV~AdG~~S~~~~~~lg~  242 (526)
T 2pyx_A          170 YHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHG-DIEKLIT---KQNG--EISGQLFIDCTGAKSLLLGEHLQV  242 (526)
T ss_dssp             EEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTS-CEEEEEE---SSSC--EEECSEEEECSGGGCCCCCCCTCC
T ss_pred             EEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCC-cEEEEEE---CCCC--EEEcCEEEECCCcchHHHHHHhCC
Confidence            356788899999999998 89999999 59999987666 6666655   2443  599999999999998543666665


Q ss_pred             C
Q 013476          306 N  306 (442)
Q Consensus       306 ~  306 (442)
                      .
T Consensus       243 ~  243 (526)
T 2pyx_A          243 P  243 (526)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.29  E-value=1.7e-10  Score=111.09  Aligned_cols=74  Identities=20%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             ccChHHHHHHHHHHHHHc-C-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          228 QMNDSRLNVGLALTAALA-G-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~-G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      .++...+...|.+.+++. | ++++++++|+++.. +++  |+ |++.+..+|+..++.||.||.|+|.+| .+.+.++.
T Consensus       103 ~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~-v~~~~~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~  177 (410)
T 3c96_A          103 SIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RV-LIGARDGHGKPQALGADVLVGADGIHS-AVRAHLHP  177 (410)
T ss_dssp             EEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EE-EEEEEETTSCEEEEEESEEEECCCTTC-HHHHHHCT
T ss_pred             eeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cE-EEEecCCCCCceEEecCEEEECCCccc-hhHHHhcC
Confidence            355677888898888774 6 58999999999988 544  33 444431235446799999999999999 57776654


Q ss_pred             C
Q 013476          306 N  306 (442)
Q Consensus       306 ~  306 (442)
                      .
T Consensus       178 ~  178 (410)
T 3c96_A          178 D  178 (410)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.28  E-value=5.9e-11  Score=104.75  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          230 NDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      ++..+...|.+.+++. |++++ +++|+++..++ + ++++|.+   .+|.  .+.||.||+|+|.++..
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~-~-~v~~v~~---~~g~--~i~a~~VV~A~G~~s~~  127 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEG-N-RVVGVRT---WEGP--PARGEKVVLAVGSFLGA  127 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-T-EEEEEEE---TTSC--CEECSEEEECCTTCSSC
T ss_pred             CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC-C-EEEEEEE---CCCC--EEECCEEEECCCCChhh
Confidence            3456778888888887 99998 67999998876 4 7877766   3443  78999999999998753

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.26  E-value=4.1e-11  Score=115.85  Aligned_cols=56  Identities=13%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ...+.+.|.+.++++|++|+++++|++|..+++  ++  |  .  .+|  ..+.||.||+|+|.+.
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~--~v--V--~--~~g--~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIEEK--KV--Y--T--RDN--EEYSFDVAISNVGVRE  243 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTT--EE--E--E--TTC--CEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECC--EE--E--E--eCC--cEEEeCEEEECCCHHH
Confidence            478899999999999999999999999998774  55  3  2  233  3799999999999865

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.25  E-value=1.9e-10  Score=105.32  Aligned_cols=66  Identities=9%  Similarity=0.002  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHHc-CceEecCeEEEEEEEcC--C--CCeEEEEEEEEC---CCC------ceEEEEc-----------
Q 013476          231 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDE--A--SNRIIGARIRNN---LSG------KEFDTYA-----------  285 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~--~--g~~v~gV~~~~~---~~g------~~~~i~a-----------  285 (442)
                      ...+...|.+.+.+. |++++.+++|++|..++  +  ..+|+||++...   .++      ....+.|           
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence            356788888888885 99999999999999874  2  127999987521   111      3357999           


Q ss_pred             ----CEEEEccCCCh
Q 013476          286 ----KVVVNAAGPFC  296 (442)
Q Consensus       286 ----~~VVlAtG~~s  296 (442)
                          |.||+|||..+
T Consensus       225 ~~~~~~VV~ATG~~~  239 (326)
T 2gjc_A          225 SQKHGVILSTTGHDG  239 (326)
T ss_dssp             STTCCEEEECCCCC-
T ss_pred             cccCCEEEECcCCCc
Confidence                99999999765

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.24  E-value=1.1e-10  Score=111.99  Aligned_cols=62  Identities=21%  Similarity=0.179  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ..+...|.+.+  .|++++++++|+++..++++  ++ |++   .+|+  ++.||.||.|+|.+| .+.+.++
T Consensus        99 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~--v~-v~~---~~g~--~~~ad~vV~AdG~~S-~vr~~~~  160 (397)
T 2vou_A           99 DSIYGGLYELF--GPERYHTSKCLVGLSQDSET--VQ-MRF---SDGT--KAEANWVIGADGGAS-VVRKRLL  160 (397)
T ss_dssp             HHHHHHHHHHH--CSTTEETTCCEEEEEECSSC--EE-EEE---TTSC--EEEESEEEECCCTTC-HHHHHHH
T ss_pred             HHHHHHHHHhC--CCcEEEcCCEEEEEEecCCE--EE-EEE---CCCC--EEECCEEEECCCcch-hHHHHhc
Confidence            45556665554  58999999999999988753  32 333   3443  789999999999999 5777776

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.24  E-value=1.9e-11  Score=121.65  Aligned_cols=58  Identities=12%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhhhCC
Q 013476          244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQ  305 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~~g~  305 (442)
                      ..+.+++.++.|.++..++ + +++||.+..  .+....+.||.||||+|.. |+.|+...|+
T Consensus       223 r~nl~v~~~~~v~~i~~~~-~-~a~gv~~~~--~~~~~~~~a~~VILsAGai~SP~LLl~SGi  281 (526)
T 3t37_A          223 RKNLTILTGSRVRRLKLEG-N-QVRSLEVVG--RQGSAEVFADQIVLCAGALESPALLMRSGI  281 (526)
T ss_dssp             CTTEEEECSCEEEEEEEET-T-EEEEEEEEE--TTEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             CCCeEEEeCCEEEEEEecC-C-eEEEEEEEe--cCceEEEeecceEEcccccCCcchhhhccC
Confidence            3589999999999999988 4 999999986  3445678999999999984 6788876654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.23  E-value=1.5e-10  Score=111.73  Aligned_cols=64  Identities=16%  Similarity=0.321  Sum_probs=51.0

Q ss_pred             EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          223 VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       223 ~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ++..|.   ..+.++|.+.+++.|++|+++++|++|..+++| +++||++.   +|+  .+.||.||.+++.+
T Consensus       250 yp~gG~---~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g-~v~gV~~~---~G~--~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          250 YPLYGL---GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDN-KVCGIKSS---DGE--IAYCDKVICDPSYV  313 (475)
T ss_dssp             EETTCT---THHHHHHHHHHHHC--CEESSCCEEEEEECTTS-CEEEEEET---TSC--EEEEEEEEECGGGC
T ss_pred             EECCCH---HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCC-eEEEEEEC---CCc--EEECCEEEECCCcc
Confidence            444443   689999999999999999999999999984446 89999873   343  69999999999987

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.22  E-value=3.7e-11  Score=118.29  Aligned_cols=65  Identities=17%  Similarity=0.048  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECC-CCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNL-SGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~-~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...+...|.+.+++.|++++++++|+++..++ ++ ..+.|++++ . +|+...+.||.||+|+|.++.
T Consensus       165 ~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~-~~~~v~~~~-~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          165 IRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKG-SGWRAQLQP-NPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTT-CCBEEEEES-CCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCC-CEEEEEEEE-CCCCCEEEEEcCEEEECCCCCcc
Confidence            46678888888888999999999999998752 23 344566642 2 332246899999999999883

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.21  E-value=3.2e-11  Score=113.63  Aligned_cols=59  Identities=17%  Similarity=0.096  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ...+...+.+.+++.|++++++++|+++..+++  .+.+|..   .+  . ++.+|.||+|||.++.
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~v~~---~~--g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           75 RAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGE--RLRVVAR---DG--R-QWLARAVISATGTWGE  133 (357)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECSCCEEEEEEETT--EEEEEET---TS--C-EEEEEEEEECCCSGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCC--cEEEEEe---CC--C-EEEeCEEEECCCCCCC
Confidence            456778888888889999999999999998874  4322332   22  2 7999999999998774

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.19  E-value=1.3e-10  Score=115.55  Aligned_cols=69  Identities=19%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             HHHHHHHH-HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcC-EEEEccCCC-hHHHhhhhCC
Q 013476          236 VGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPF-CDSVRKLADQ  305 (442)
Q Consensus       236 ~~l~~~~~-~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~-~VVlAtG~~-s~~l~~~~g~  305 (442)
                      ..++..+. +.|++|+.++.|++|..++++ +++||++.+..+|+...++|+ .||+|+|++ ++.|+...|+
T Consensus       212 ~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~-~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi  283 (546)
T 2jbv_A          212 VSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI  283 (546)
T ss_dssp             HHHTGGGTTCTTEEEECSCEEEEEEECTTS-BEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             HHHHHHHhcCCCcEEEeCCEEEEEEECCCC-eEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence            44444444 569999999999999997645 999999875222666789997 999999994 7888876654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.18  E-value=1.4e-10  Score=106.92  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=33.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .|+.|||+|||||++|++||++|++.|++|+|||++..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~   40 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN   40 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46789999999999999999999999999999999753

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.18  E-value=1.5e-09  Score=106.29  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC------CeEEEEeccC-CCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRG------LRVGLVERED-FSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G------~~V~liEk~~-~~~  107 (442)
                      +.+||+|||||++||+||++|+++|      ++|+|+|+.+ +++
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG   48 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG   48 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCc
Confidence            3589999999999999999999999      9999999985 544

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.17  E-value=2.9e-11  Score=119.99  Aligned_cols=66  Identities=21%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEE---EcCEEEEccCCC-hHHHhhhhCC
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDT---YAKVVVNAAGPF-CDSVRKLADQ  305 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i---~a~~VVlAtG~~-s~~l~~~~g~  305 (442)
                      ++..+++.|++|++++.|++|..+++  + +++||++.+ .+|+..++   .+|.||+|+|++ ++.|+...|+
T Consensus       200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~~~GV~~~~-~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi  271 (536)
T 1ju2_A          200 LLNKGNSNNLRVGVHASVEKIIFSNAPGL-TATGVIYRD-SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV  271 (536)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSC-BEEEEEEEC-TTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             hhhhhcCCCcEEEeCCEEEEEEECCCCCC-EEEEEEEEe-CCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence            34445667999999999999998763  4 899999975 35554455   469999999997 6778776654

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.16  E-value=1.6e-10  Score=97.68  Aligned_cols=65  Identities=15%  Similarity=-0.003  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +..+...+.+.+++.|++++++ +|+++..++++  + .|.+   .+|   .+.||.||+|+|..+ ++++.+|++
T Consensus        55 ~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~--~-~v~~---~~g---~i~ad~vI~A~G~~~-~~~~~~g~~  119 (180)
T 2ywl_A           55 GEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGV--F-EVET---EEG---VEKAERLLLCTHKDP-TLPSLLGLT  119 (180)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSS--E-EEEC---SSC---EEEEEEEEECCTTCC-HHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCE--E-EEEE---CCC---EEEECEEEECCCCCC-CccccCCCC
Confidence            3567778888888999999999 99999987644  2 2332   233   789999999999987 577777754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.16  E-value=1.5e-10  Score=112.84  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEc--CCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKD--EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~--~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      ..+.++|.+.+++.|++|+++++|++|..+  + + ++++|..    +|  ..+.||.||+|+|.++..+
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~-~-~~~~V~~----~g--~~~~ad~VV~a~~~~~~~l  303 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT-G-KFEGVKT----KL--GTFKAPLVIADPTYFPEKC  303 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTT-T-EEEEEEE----TT--EEEECSCEEECGGGCGGGE
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCC-C-eEEEEEE----CC--eEEECCEEEECCCccchhh
Confidence            578999999999999999999999999987  5 5 8888765    23  4789999999999998654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.14  E-value=3.7e-10  Score=111.35  Aligned_cols=66  Identities=11%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             HHHHHHHHcC-ceEecCeEEEEEEEcCC-CCeEEEEEEEECCCC---ceEEEEcCEEEEccCCC-hHHHhhhhC
Q 013476          237 GLALTAALAG-AAVLNHAEVISLIKDEA-SNRIIGARIRNNLSG---KEFDTYAKVVVNAAGPF-CDSVRKLAD  304 (442)
Q Consensus       237 ~l~~~~~~~G-v~i~~~~~v~~l~~~~~-g~~v~gV~~~~~~~g---~~~~i~a~~VVlAtG~~-s~~l~~~~g  304 (442)
                      .+++.++++| ++|++++.|++|+.+++ + +++||++.+ .+|   +..+++|+.||+|+|++ ++.|+...|
T Consensus       226 ~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~-~~~gV~~~~-~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg  297 (504)
T 1n4w_A          226 TYLAAALGTGKVTIQTLHQVKTIRQTKDGG-YALTVEQKD-TDGKLLATKEISCRYLFLGAGSLGSTELLVRAR  297 (504)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSS-EEEEEEEEC-TTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCC-EEEEEEEeC-CCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence            4455566675 99999999999999853 4 899999874 345   34679999999999997 677777766

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.12  E-value=5.2e-10  Score=107.56  Aligned_cols=67  Identities=18%  Similarity=0.113  Sum_probs=46.8

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +...+.+.|.+.   .+.+|+++++++++++.+++ .|+ |+.   .+|+  +++||.||.|.|.+| .+.+.++...
T Consensus       110 ~R~~L~~~L~~~---~~~~v~~~~~v~~~~~~~~~-~v~-v~~---~dG~--~~~adlvVgADG~~S-~vR~~l~~~~  176 (412)
T 4hb9_A          110 SRTELKEILNKG---LANTIQWNKTFVRYEHIENG-GIK-IFF---ADGS--HENVDVLVGADGSNS-KVRKQYLPFI  176 (412)
T ss_dssp             EHHHHHHHHHTT---CTTTEECSCCEEEEEECTTS-CEE-EEE---TTSC--EEEESEEEECCCTTC-HHHHHHSTTC
T ss_pred             eHHHHHHHHHhh---ccceEEEEEEEEeeeEcCCC-eEE-EEE---CCCC--EEEeeEEEECCCCCc-chHHHhCCCc
Confidence            334454544432   35678999999999987765 543 333   4554  789999999999999 6777776543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.12  E-value=2.9e-10  Score=107.76  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=44.9

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +.+..+...+.+.+++.|++++++++|+++..++++|.   |..   .++   .+.+|.||+|||.++
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~---v~~---~~g---~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYT---IAT---TTE---TYHADYIFVATGDYN  143 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEE---EEE---SSC---CEEEEEEEECCCSTT
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEE---EEe---CCC---EEEeCEEEECCCCCC
Confidence            34456777777888889999999999999998765432   222   222   588999999999976

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.11  E-value=1.7e-10  Score=115.63  Aligned_cols=63  Identities=16%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             HHHHcCceEecCeEEEEEEEcCC---CCeEEEEEEEECCCCceEEEEc-CEEEEccCCC-hHHHhhhhCC
Q 013476          241 TAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPF-CDSVRKLADQ  305 (442)
Q Consensus       241 ~~~~~Gv~i~~~~~v~~l~~~~~---g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~-s~~l~~~~g~  305 (442)
                      .+++.|++|+.++.|++|+.+++   + +++||++.+ .+|+..+++| |.||||+|++ ++.|+...|+
T Consensus       240 ~~~~~nl~i~~~~~v~~l~~~~~~~~~-~~~GV~~~~-~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI  307 (587)
T 1gpe_A          240 NYQRSNLEILTGQMVGKVLFKQTASGP-QAVGVNFGT-NKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (587)
T ss_dssp             TTTCTTEEEEESCEEEEEEEEEETTEE-EEEEEEEEE-ETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             hhcCCCcEEEcCCEEEEEEECCCCCCC-EEEEEEEEe-CCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence            34456999999999999988642   4 899999975 4666678999 8999999995 5677766654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.10  E-value=5.6e-10  Score=106.95  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD  304 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g  304 (442)
                      ++...+.+.|.+.+.  +++|+++++|+++..++++  ++ |++   .+|+  ++.||.||.|+|.+| .+.+.++
T Consensus       125 i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~--v~-v~~---~~g~--~~~ad~vV~AdG~~S-~vR~~l~  189 (398)
T 2xdo_A          125 INRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKKK--WT-LTF---ENKP--SETADLVILANGGMS-KVRKFVT  189 (398)
T ss_dssp             ECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSSS--EE-EEE---TTSC--CEEESEEEECSCTTC-SCCTTTC
T ss_pred             ECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCCE--EE-EEE---CCCc--EEecCEEEECCCcch-hHHhhcc
Confidence            455677777776654  3789999999999988753  32 333   3443  689999999999998 4666554

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.10  E-value=1.6e-09  Score=104.95  Aligned_cols=39  Identities=31%  Similarity=0.492  Sum_probs=34.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTS  110 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s  110 (442)
                      +||||||||++|++||+.|+++|++|+|||+.+ +++.+.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   41 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAY   41 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeec
Confidence            799999999999999999999999999999975 554443

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.09  E-value=2.1e-10  Score=114.44  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             HHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCce--EEE-EcCEEEEccCCC-hHHHhhhhCCC
Q 013476          236 VGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE--FDT-YAKVVVNAAGPF-CDSVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~--~~i-~a~~VVlAtG~~-s~~l~~~~g~~  306 (442)
                      ..+++.+.+ .|++|++++.|++|..++ + +++||++.+..+|+.  .++ .+|.||+|+|++ ++.|+...|+.
T Consensus       199 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~-~-~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          199 ATYLQTALARPNFTFKTNVMVSNVVRNG-S-QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             HTHHHHHHTCTTEEEECSCCEEEEEEET-T-EEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             HHHHHHHhhCCCcEEEeCCEEEEEEEeC-C-EEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            345565655 599999999999999986 5 999999864224542  233 779999999996 57788777764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.09  E-value=2.5e-09  Score=103.39  Aligned_cols=60  Identities=20%  Similarity=0.296  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      ..+.++|.+.+++.|++|+++++|++|..++ + ++++|..    +|  ..+.||.||+|+|.+...+
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~-~v~~v~~----~g--~~~~ad~VV~a~~~~~~~~  293 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMEN-G-KVVGVKS----EG--EVARCKQLICDPSYVPDRV  293 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEET-T-EEEEEEE----TT--EEEECSEEEECGGGCGGGE
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeC-C-EEEEEEE----CC--eEEECCEEEECCCCCcccc
Confidence            6899999999999999999999999999877 5 8887763    33  4789999999999998543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.09  E-value=3.7e-10  Score=113.79  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh-HHHhhhhCCC
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQN  306 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s-~~l~~~~g~~  306 (442)
                      .|++|++++.|++|..++++.+++||++.+..+|+..++.||.||+|+|... ..++...|+.
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG  335 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG  335 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence            4899999999999998753228999999874567777899999999999864 5677766653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.09  E-value=7.8e-10  Score=107.94  Aligned_cols=68  Identities=15%  Similarity=0.107  Sum_probs=50.2

Q ss_pred             cChHHHHHHHHHHHHHcCce--EecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAA--VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .+...+...+.+.+++.|++  ++++++|+++..++++ ..+.|++.+..+|+..++.+|.||+|||.++.
T Consensus        98 ~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~-~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~  167 (464)
T 2xve_A           98 PPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDS-QTFTVTVQDHTTDTIYSEEFDYVVCCTGHFST  167 (464)
T ss_dssp             CBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTT-TEEEEEEEETTTTEEEEEEESEEEECCCSSSS
T ss_pred             CCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCC-CcEEEEEEEcCCCceEEEEcCEEEECCCCCCC
Confidence            34567778888888888998  9999999999887642 23345665422344467899999999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.08  E-value=2.5e-09  Score=103.99  Aligned_cols=65  Identities=11%  Similarity=0.031  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCc-eEEEEcCEEEEccCCChH
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK-EFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~-~~~i~a~~VVlAtG~~s~  297 (442)
                      ....+.+.+.+.+++.+..++++++|+++..++++|.   |++.+..+|+ ...+.+|.||+|||.++.
T Consensus       113 ~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~---V~~~~~~~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          113 HRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWV---VTYKGTKAGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             BHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEE---EEEEESSTTCCEEEEEESEEEECCCSSSS
T ss_pred             CHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEE---EEEeecCCCCeeEEEEeCEEEECCCCCCC
Confidence            3456777777778777889999999999988764333   4554322343 347899999999999874

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.08  E-value=7.2e-11  Score=110.75  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHH---CCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAAT---RGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~---~G~~V~liEk~~  104 (442)
                      +||+|||||++|+++|+.|++   +|++|+||||..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            599999999999999999999   999999999986

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.06  E-value=1.2e-09  Score=108.41  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      ..+.++|.+.+.+.|++|+++++|++|..++.  ++   ++   .+|+  .+.||.||.+.-.  ..|.+.+
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--~v---~~---~~G~--~~~ad~vI~t~P~--~~l~~~l  281 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNK--TV---TL---QDGT--TIGYKKLVSTMAV--DFLAEAM  281 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTT--EE---EE---TTSC--EEEEEEEEECSCH--HHHHHHT
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCC--EE---EE---cCCC--EEECCEEEECCCH--HHHHHhc
Confidence            57888898888899999999999999988763  44   33   3454  7899999988764  3344443

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.06  E-value=1.3e-09  Score=107.46  Aligned_cols=67  Identities=15%  Similarity=0.029  Sum_probs=51.5

Q ss_pred             HHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCC---ceEEEEcCEEEEccCCC-hHHHhhhhC
Q 013476          237 GLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSG---KEFDTYAKVVVNAAGPF-CDSVRKLAD  304 (442)
Q Consensus       237 ~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g---~~~~i~a~~VVlAtG~~-s~~l~~~~g  304 (442)
                      .++..++++ +++|++++.|++|+.++++.+++||++.+ .+|   +..+++|+.||+|+|++ ++.|+...|
T Consensus       231 ~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~-~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg  302 (507)
T 1coy_A          231 TYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQID-EQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK  302 (507)
T ss_dssp             THHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEEC-TTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeC-CCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence            445555566 59999999999999986331799999874 244   24679999999999997 777877766

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.05  E-value=3e-10  Score=105.43  Aligned_cols=57  Identities=12%  Similarity=-0.077  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +..+...+.+.+++.|+++++ ++|+++..+++.  + -|..   .++  ..+.+|.||+|||...
T Consensus        69 ~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~--~-~v~~---~~g--~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           69 ASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDE--F-VVKT---KRK--GEFKADSVILGIGVKR  125 (323)
T ss_dssp             HHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--C--E-EEEE---SSS--CEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCE--E-EEEE---CCC--CEEEcCEEEECcCCCC
Confidence            356677778888888999998 899999887643  2 1333   233  3789999999999873

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.04  E-value=6e-09  Score=102.25  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC--CeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG--LRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~~  105 (442)
                      |.++||+|||||++|+++|++|+++|  ++|+|+|+...
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            34689999999999999999999999  99999999863

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.03  E-value=8.1e-09  Score=102.37  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH--HhhhhCCCC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--VRKLADQNV  307 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~--l~~~~g~~~  307 (442)
                      +..+...+.+.+++.|++|+++++|+++..++++ +|.++.+.. .+|+ ..+.||.||+|+|...+.  +++.+|+..
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-~v~~~~v~~-~~G~-~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~  329 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANG-RVQAVVAMT-PNGE-MRIETDFVFLGLGEQPRSAELAKILGLDL  329 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTS-BEEEEEEEE-TTEE-EEEECSCEEECCCCEECCHHHHHHHTCCB
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCC-ceEEEEEEE-CCCc-EEEEcCEEEECcCCccCCccCHHHcCCcc
Confidence            3567788888899999999999999999986655 776555553 3332 379999999999987653  677777653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.03  E-value=9.4e-10  Score=102.77  Aligned_cols=60  Identities=10%  Similarity=0.074  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ...+...+.+.+++.|+++++++ |+++..+++  .+. +...  .++....+.+|.||+|+|...
T Consensus        83 ~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~--~~~-v~~~--~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           83 GSELMDRMREQSTKFGTEIITET-VSKVDLSSK--PFK-LWTE--FNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSC-EEEEECSSS--SEE-EEET--TCSSSCCEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCC--EEE-EEEE--ecCCCcEEEeCEEEECcCCCc
Confidence            35677788888888999999998 999988764  332 2221  112234789999999999853

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.02  E-value=1.4e-09  Score=107.81  Aligned_cols=62  Identities=19%  Similarity=0.060  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          230 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +...+...+.+.+++.|+  +++++++|+++..++++ ....|++   .+|+  ++.||.||+|||.++.
T Consensus        85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~-~~~~V~~---~~G~--~i~ad~lV~AtG~~s~  148 (540)
T 3gwf_A           85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDE-NLWEVTT---DHGE--VYRAKYVVNAVGLLSA  148 (540)
T ss_dssp             EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTT-TEEEEEE---TTSC--EEEEEEEEECCCSCCS
T ss_pred             CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCC-CEEEEEE---cCCC--EEEeCEEEECCccccc
Confidence            345677778888888898  89999999999987653 3333444   3443  7899999999998763

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.02  E-value=3.6e-10  Score=105.59  Aligned_cols=58  Identities=21%  Similarity=0.119  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +..+...+.+.+++.+++++++++|+++..+++.  +   .+.. .++  ..+.+|.||+|||..+
T Consensus        64 ~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~--~---~v~~-~~g--~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           64 AKDLVKGLVEQVAPFNPVYSLGERAETLEREGDL--F---KVTT-SQG--NAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTE--E---EEEE-TTS--CEEEEEEEEECCTTSE
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCE--E---EEEE-CCC--CEEEeCEEEECCCCCC
Confidence            3566777778888889999999999999887642  2   2222 233  3689999999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.01  E-value=1.9e-09  Score=107.14  Aligned_cols=62  Identities=23%  Similarity=0.222  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          230 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +...+...+.+.+++.|+  +++++++|+++..++++ ..+.|++   .+|+  ++.||.||+|||.++.
T Consensus        97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~-~~w~V~~---~~G~--~i~ad~lV~AtG~~s~  160 (549)
T 4ap3_A           97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEG-LRWTVRT---DRGD--EVSARFLVVAAGPLSN  160 (549)
T ss_dssp             BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTT-TEEEEEE---TTCC--EEEEEEEEECCCSEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCC-CEEEEEE---CCCC--EEEeCEEEECcCCCCC
Confidence            345667777788888887  89999999999887653 3333444   3443  6899999999998763

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.00  E-value=1.6e-09  Score=100.09  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      ..+|||+|||||++|++||++|++.|++|+||||..++
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~g   41 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPG   41 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            35699999999999999999999999999999997543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.00  E-value=1.1e-09  Score=103.41  Aligned_cols=59  Identities=20%  Similarity=0.081  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +..+...+.+.+++.|++++++++|+++..++++ .+ .|.+   .++  ..+.+|.||+|+|..+
T Consensus        73 ~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~-~~-~v~~---~~g--~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           73 AIDLVESLWAQAERYNPDVVLNETVTKYTKLDDG-TF-ETRT---NTG--NVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTS-CE-EEEE---TTS--CEEEEEEEEECCTTCS
T ss_pred             HHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCc-eE-EEEE---CCC--cEEEeeEEEEccCCCc
Confidence            4567777888888889999999999999987643 22 2333   333  3789999999999964

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.98  E-value=5.1e-10  Score=104.33  Aligned_cols=57  Identities=19%  Similarity=0.107  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      +..+...+.+.+++.|++++++++|+++..++++  ...|..   .++   .+.+|.||+|||..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~v~~---~~g---~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           66 AQELINNLKEQMAKFDQTICLEQAVESVEKQADG--VFKLVT---NEE---THYSKTVIITAGNG  122 (332)
T ss_dssp             HHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTS--CEEEEE---SSE---EEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCC--cEEEEE---CCC---EEEeCEEEECCCCC
Confidence            4567778888888889999999999999987652  122333   222   48999999999994

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.98  E-value=2e-09  Score=105.37  Aligned_cols=61  Identities=20%  Similarity=0.145  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEE--EEEEECCCCceEEEEcCEEEEccCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIG--ARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~g--V~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      ..+...+...+++.+++++++++|+++..++ ++ +.+.  |...+ .+|+...+.+|.||+|||.
T Consensus       127 ~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~-~~~~~~V~~~~-g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          127 MEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAG-QVEALRVISRN-ADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETT-EEEEEEEEEEE-TTSCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCC-ceEEEEEEEec-CCCceEEEEeCEEEECCCC
Confidence            4556666667777799999999999998762 12 4443  33433 2344457999999999997

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.97  E-value=2.8e-09  Score=104.62  Aligned_cols=57  Identities=18%  Similarity=0.084  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.|.+.+++.|++|+++++|++|..++++  ++.|..    ++  .++.||.||+|++.+.
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~--~~~v~~----~~--~~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG--RWKVSL----RD--SSLEADHVISAIPASV  290 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGGG--CEEEEC----SS--CEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc--eEEEEE----CC--eEEEcCEEEECCCHHH
Confidence            478899999999999999999999999987643  223322    22  2689999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.97  E-value=1.1e-09  Score=101.01  Aligned_cols=58  Identities=17%  Similarity=0.040  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ++..+...+.+.+++.|+++++ ++|+++..+++  .+. |..   .+++  .+.+|.||+|||..+
T Consensus        57 ~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~--~~~-v~~---~~g~--~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           57 SGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDS--HFV-ILA---EDGK--TFEAKSVIIATGGSP  114 (311)
T ss_dssp             CHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETT--EEE-EEE---TTSC--EEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCC--EEE-EEE---cCCC--EEECCEEEECCCCCC
Confidence            3456667777778888999987 78999988764  321 222   3343  789999999999754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.97  E-value=4.4e-09  Score=104.77  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .++||||||||++|+++|+.|++.|++|+|||+..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   49 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   49 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            35899999999999999999999999999999986

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.97  E-value=2.5e-09  Score=106.19  Aligned_cols=62  Identities=11%  Similarity=0.077  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          230 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ....+...+.+.+++.|+  .++++++|+++..+++. ..+.|++   .+|  .++.||.||+|+|.++.
T Consensus        85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~-~~w~V~~---~~G--~~~~ad~lV~AtG~~s~  148 (545)
T 3uox_A           85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVEND-RLWEVTL---DNE--EVVTCRFLISATGPLSA  148 (545)
T ss_dssp             BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGG-TEEEEEE---TTT--EEEEEEEEEECCCSCBC
T ss_pred             CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCC-CEEEEEE---CCC--CEEEeCEEEECcCCCCC
Confidence            345666777777788887  88999999999876543 3333444   344  37899999999998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.93  E-value=1.2e-08  Score=100.24  Aligned_cols=67  Identities=18%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH-H--hhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS-V--RKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~-l--~~~~g~~  306 (442)
                      ..+...+.+.+++.|++++++++|+++..+++  ++ .|++   .+|  ..+.||.||+|+|...+. +  ++.+|+.
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~--~v-~v~~---~~g--~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~  301 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTEN--CY-NVVL---TNG--QTICADRVMLATGRVPNTTGLGLERAGVK  301 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEECSS--SE-EEEE---TTS--CEEEESEEEECCCEEECCTTCCHHHHTCC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCC--EE-EEEE---CCC--cEEEcCEEEEeeCCCcCCCCCChhhcCce
Confidence            56777888888999999999999999988764  44 3444   344  378999999999985532 2  4455554

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.93  E-value=3.4e-09  Score=96.97  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||+|||||++|+++|+.|+++|++|+|||+..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4899999999999999999999999999999964

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.89  E-value=1.8e-09  Score=100.72  Aligned_cols=56  Identities=13%  Similarity=0.093  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +..+...+.+.+++.|+++++++ |.++..++++|.   |.+    +  ...+.+|.||+|||.++
T Consensus        69 ~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~---v~~----~--~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           69 GVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFK---LFT----D--SKAILADAVILAIGAVA  124 (333)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEE---EEC----S--SEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEE---EEE----C--CcEEEcCEEEECCCCCc
Confidence            34667777788888999999987 999987764422   222    2  24789999999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.89  E-value=4.8e-09  Score=102.47  Aligned_cols=68  Identities=22%  Similarity=0.191  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEE-EEECCCCceEEEEcCEEEEccCCChHHH---hhhhCCC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR-IRNNLSGKEFDTYAKVVVNAAGPFCDSV---RKLADQN  306 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~-~~~~~~g~~~~i~a~~VVlAtG~~s~~l---~~~~g~~  306 (442)
                      ...+...+.+.+++.|++|+++++|+++..++++ . ..|. +   .+|  . +.+|.||+|+|...+..   ++.+|+.
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~~v~~~---~~g--~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~  281 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADADG-R-RVATTM---KHG--E-IVADQVMLALGRMPNTNGLGLEAAGVR  281 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTS-C-EEEEES---SSC--E-EEESEEEECSCEEESCTTSSTGGGTCC
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCC-E-EEEEEc---CCC--e-EEeCEEEEeeCcccCCCCCCccccCce
Confidence            3567788888899999999999999999987654 3 3344 3   344  2 89999999999865422   4555544

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.89  E-value=2.3e-09  Score=99.06  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .|||+|||||++|++||++|+++|++|+|||+...
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            48999999999999999999999999999999754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.89  E-value=6.4e-09  Score=96.61  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..+||+|||||++|+++|+.|++.|++|+|||+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   41 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM   41 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            35899999999999999999999999999999974

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.88  E-value=1.1e-07  Score=93.29  Aligned_cols=63  Identities=17%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++.|++|++++++.++..++++ .+ .|++.+..+++...+.+|.||+|+|...
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDG-KL-LVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTS-CE-EEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-cE-EEEEecCCCCceeEEEcCEEEECccccc
Confidence            456677788888999999999999999886654 44 3666653335556899999999999743

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.87  E-value=3.4e-08  Score=97.25  Aligned_cols=72  Identities=17%  Similarity=0.062  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH--H-hhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--V-RKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~--l-~~~~g~~  306 (442)
                      ..+...+.+.+++.|++++++++++++..+++  .+ .|.+.+..+|+...+.+|.||+|+|...+.  | +...|+.
T Consensus       239 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~--~~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~  313 (491)
T 3urh_A          239 GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGD--GA-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVV  313 (491)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETT--EE-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCC--EE-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCce
Confidence            45667778888899999999999999988764  33 356654223544689999999999975421  2 4445544

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.87  E-value=1.1e-08  Score=94.50  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEE-EeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGL-VEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~l-iEk~~~  105 (442)
                      ..+||+|||||++|+++|+.|+++|++|+| +||..+
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~   39 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMP   39 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSST
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCC
Confidence            458999999999999999999999999999 999543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.86  E-value=1.1e-08  Score=94.86  Aligned_cols=35  Identities=29%  Similarity=0.625  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .++||+|||||++|+++|+.|+++|++|+|||+..
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   49 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV   49 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            35899999999999999999999999999999954

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.84  E-value=8.1e-08  Score=94.68  Aligned_cols=57  Identities=19%  Similarity=0.086  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.|.+.+++.| ++|+++++|++|..+++  .+. |+.   .+|+  .+.||.||+|+|...
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~--~v~-v~~---~~g~--~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERD--AAR-VTA---RDGR--EFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSS--SEE-EEE---TTCC--EEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCC--EEE-EEE---CCCC--EEEcCEEEECCCHHH
Confidence            578889999999898 99999999999998774  332 333   3443  689999999999754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.84  E-value=3.4e-08  Score=96.88  Aligned_cols=39  Identities=28%  Similarity=0.533  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      +.++||+|||||++||++|+.|+++|++|+|+|+.. +++
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GG   53 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG   53 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc
Confidence            345899999999999999999999999999999997 443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.84  E-value=1.5e-07  Score=92.19  Aligned_cols=74  Identities=12%  Similarity=-0.004  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCce--EEEEcCEEEEccCCChH--HH-hhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE--FDTYAKVVVNAAGPFCD--SV-RKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~--~~i~a~~VVlAtG~~s~--~l-~~~~g~~  306 (442)
                      ..+...+.+.+++.|++++++++++++..++++ ....|.+.+..+++.  ..+.+|.||+|+|...+  .| ++.+|+.
T Consensus       228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~  306 (478)
T 3dk9_A          228 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSG-LEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQ  306 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSS-EEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-cEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCe
Confidence            556677788888999999999999999887654 333455543112322  57999999999997543  23 4555544

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.83  E-value=5.7e-08  Score=99.89  Aligned_cols=38  Identities=24%  Similarity=0.446  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+....+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~g  372 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIG  372 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccccee
Confidence            35899999999999999999999999999999986333

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.82  E-value=2.3e-08  Score=93.27  Aligned_cols=36  Identities=33%  Similarity=0.383  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +..+||+|||||++|+++|+.|++.|++|+|||+..
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   47 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS   47 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            456899999999999999999999999999999764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.81  E-value=8.8e-08  Score=92.15  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCCC
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQNV  307 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~~  307 (442)
                      +..+...+.+.++++|++|+++++|+++..++ + ++++|++.   +|+  .+.||.||+|+|...+ .+++.+|+..
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-~v~~v~l~---dG~--~i~aD~Vv~a~G~~p~~~l~~~~gl~~  263 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-T-KVTGVRMQ---DGS--VIPADIVIVGIGIVPCVGALISAGASG  263 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESS-S-BEEEEEES---SSC--EEECSEEEECSCCEESCHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecC-C-cEEEEEeC---CCC--EEEcCEEEECCCCccChHHHHhCCCCc
Confidence            46777888888999999999999999998876 5 88888874   443  7899999999998654 4777776653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.80  E-value=1.4e-08  Score=94.03  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.+||+|||||++|+++|+.|++.|++|+|||+..
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC
Confidence            34899999999999999999999999999999753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.80  E-value=3.6e-09  Score=95.94  Aligned_cols=34  Identities=26%  Similarity=0.453  Sum_probs=32.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||+|||||++||+||+.|+++|++|+||||.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4999999999999999999999999999999986

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.80  E-value=6.3e-08  Score=94.94  Aligned_cols=35  Identities=34%  Similarity=0.647  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+|||+|||||++|+++|+.|++.|++|+||||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            46999999999999999999999999999999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.79  E-value=2.6e-07  Score=90.81  Aligned_cols=63  Identities=16%  Similarity=0.098  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++.|+++++++.+.++...+++ .+ .|++.+..+|+...+.+|.||+|+|.-.
T Consensus       225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~-~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTN-QL-QVTWEDHASGKEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTS-CE-EEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-cE-EEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence            456777788888999999999999999875544 43 3555542235545689999999999743

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.76  E-value=1.5e-07  Score=93.12  Aligned_cols=36  Identities=33%  Similarity=0.531  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.++||+|||||++|+++|+.|++.|++|+||||.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            456999999999999999999999999999999964

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.75  E-value=1.8e-07  Score=92.46  Aligned_cols=36  Identities=39%  Similarity=0.542  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.+|||||||+|.+|+++|..+++.|++|+|||+..
T Consensus        40 ~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           40 TYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             CSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            346999999999999999999999999999999875

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.74  E-value=3.6e-08  Score=96.29  Aligned_cols=34  Identities=35%  Similarity=0.552  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||+|||||++|+++|+.|++.|++|+|||+..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~   36 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY   36 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4899999999999999999999999999999974

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.73  E-value=4e-08  Score=90.47  Aligned_cols=59  Identities=17%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCC-CCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~-g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++.|++++++++|+.+..+.+ + ....|.+   .++  ..+.+|.||+|||...
T Consensus        56 ~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~-~~~~v~~---~~g--~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           56 QKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEG-GLHQIET---ASG--AVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTT-CCEEEEE---TTS--CEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEccCEEEEEEecccCC-ceEEEEE---CCC--CEEEeCEEEECcCCCc
Confidence            34566677777888999999999999976532 1 1222333   334  3689999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.72  E-value=5.7e-07  Score=87.86  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +..+...+.+.+++.|++++++++|+++..+++  . ..|.+    ++  ..+.+|.||+|+|...+
T Consensus       215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~-~~v~~----~~--~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDG--E-FVLTT----TH--GELRADKLLVATGRTPN  272 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTCCEEEEEEETT--E-EEEEE----TT--EEEEESEEEECSCEEES
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--E-EEEEE----CC--cEEEcCEEEECCCCCcC
Confidence            356778888889999999999999999987652  2 23433    22  47999999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.70  E-value=9.1e-08  Score=94.68  Aligned_cols=36  Identities=31%  Similarity=0.713  Sum_probs=33.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++..+||+|||||++|+++|++|++.|++|+|||+.
T Consensus       209 ~~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~  244 (521)
T 1hyu_A          209 KRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER  244 (521)
T ss_dssp             TSCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             ccCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            456799999999999999999999999999999863

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.69  E-value=3.3e-07  Score=90.12  Aligned_cols=63  Identities=21%  Similarity=0.162  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCC-----CeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEAS-----NRIIGARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g-----~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      .++.++|...+++.+..++++++|+++..++.+     +..+-|++.+..+|+...+.|+.||+|||.
T Consensus       145 ~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          145 LEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            456677777777777889999999999875421     123456777656777788999999999995

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.68  E-value=8.3e-08  Score=93.74  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||+|||||++|+++|+.|++.|++|+||||..
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~   37 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG   37 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            4899999999999999999999999999999765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.67  E-value=1.9e-07  Score=91.66  Aligned_cols=68  Identities=22%  Similarity=0.162  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH--H-hhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--V-RKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~--l-~~~~g~~  306 (442)
                      ..+...+.+.++++|++|+++++|+++..++++ . ..|++   .+|+  .+.+|.||+|+|...+.  | ++.+|+.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~-~~v~~---~~G~--~i~~D~vv~a~G~~p~~~~L~l~~~gl~  301 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNADG-T-RHVVF---ESGA--EADYDVVMLAIGRVPRSQTLQLEKAGVE  301 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS-C-EEEEE---TTSC--EEEESEEEECSCEEESCTTSCGGGGTCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-E-EEEEE---CCCc--EEEcCEEEEccCCCcCccccCchhcCcc
Confidence            466778888889999999999999999887643 2 33444   3443  78999999999986542  3 4555554

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.67  E-value=1.3e-07  Score=92.85  Aligned_cols=34  Identities=44%  Similarity=0.781  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~   39 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4899999999999999999999999999999964

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.66  E-value=2.1e-07  Score=95.35  Aligned_cols=62  Identities=11%  Similarity=0.046  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhh
Q 013476          233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRK  301 (442)
Q Consensus       233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~  301 (442)
                      .+...+.+.+++.|++|+++++|+++..++       +.+....+++...+.||.||+|+|...+ .+..
T Consensus       568 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-------~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~  630 (690)
T 3k30_A          568 FEVNRIQRRLIENGVARVTDHAVVAVGAGG-------VTVRDTYASIERELECDAVVMVTARLPREELYL  630 (690)
T ss_dssp             TCHHHHHHHHHHTTCEEEESEEEEEEETTE-------EEEEETTTCCEEEEECSEEEEESCEEECCHHHH
T ss_pred             hhHHHHHHHHHHCCCEEEcCcEEEEEECCe-------EEEEEccCCeEEEEECCEEEECCCCCCChHHHH
Confidence            345677788889999999999999997432       1222213455668999999999998543 3444

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.66  E-value=8.4e-08  Score=94.09  Aligned_cols=34  Identities=35%  Similarity=0.640  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||+|||||++|+++|+.|++.|++|+|||+..
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   38 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4899999999999999999999999999999964

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.64  E-value=1.9e-07  Score=91.54  Aligned_cols=36  Identities=42%  Similarity=0.578  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .++||+|||||++|+++|+.|++.|++|+|||++.+
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~   45 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKAL   45 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCT
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            458999999999999999999999999999999753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.64  E-value=9.6e-08  Score=93.51  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      ..||||||||++|+++|+.|+++  |.+|+|||+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~   38 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQAS   38 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            47999999999999999999998  99999999985

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.63  E-value=2e-07  Score=91.16  Aligned_cols=36  Identities=33%  Similarity=0.615  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~   39 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   39 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            456999999999999999999999999999999985

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.63  E-value=2.5e-07  Score=90.45  Aligned_cols=34  Identities=38%  Similarity=0.733  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||+|||||++|+++|++|++.|++|+|||+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   35 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRG   35 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4899999999999999999999999999999985

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.61  E-value=1.6e-07  Score=94.60  Aligned_cols=36  Identities=31%  Similarity=0.349  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      +...||||||||++|+++|+.|++.  |.+|+|||+.+
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~   71 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGE   71 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            4568999999999999999999998  89999999986

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.60  E-value=2.7e-07  Score=89.88  Aligned_cols=35  Identities=34%  Similarity=0.572  Sum_probs=32.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ++||+|||||++|+++|..|++.|++|+|||+..+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~   37 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            48999999999999999999999999999999743

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.57  E-value=1.5e-07  Score=91.51  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      ..+||||||||++|+++|+.|++.  |.+|+|||+.+
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~   38 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE   38 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            347999999999999999999998  88999999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.57  E-value=3.1e-07  Score=90.49  Aligned_cols=35  Identities=31%  Similarity=0.530  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATR---GLRVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~---G~~V~liEk~~~  105 (442)
                      ++||||||||++|+++|++|++.   |++|+|||+..+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~   39 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   39 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCc
Confidence            48999999999999999999999   999999999873

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.56  E-value=1.8e-07  Score=90.91  Aligned_cols=33  Identities=21%  Similarity=0.536  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .||||||||++|+++|+.|++.  |.+|+|||+++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~   37 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQA   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            6999999999999999999998  99999999986

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.55  E-value=2.5e-07  Score=89.97  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      +||||||||++|+++|..|++.  |.+|+|||+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~   35 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMND   35 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            5899999999999999999998  99999999985

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.52  E-value=6.7e-08  Score=92.78  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHH---CCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAAT---RGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~---~G~~V~liEk~~  104 (442)
                      .||||||||++|+++|+.|++   .|++|+|||+++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            489999999999999999999   899999999975

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.52  E-value=1.4e-07  Score=92.66  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC---CeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG---LRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G---~~V~liEk~~  104 (442)
                      ++++||||||||++|+++|..|++.|   .+|+|||+..
T Consensus        33 ~m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~   71 (490)
T 2bc0_A           33 RWGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNS   71 (490)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence            34589999999999999999999988   9999999975

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.52  E-value=6.8e-08  Score=89.69  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHH--CCCeEEEEeccCC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAAT--RGLRVGLVEREDF  105 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~--~G~~V~liEk~~~  105 (442)
                      +..++||+|||||++|++||++|++  .|++|+||||+..
T Consensus        62 ~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~  101 (326)
T 3fpz_A           62 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             hccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            4567999999999999999999985  4999999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.51  E-value=3.5e-07  Score=88.81  Aligned_cols=33  Identities=15%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .||||||||++|+++|..|++.  |.+|+|||+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   35 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCC
Confidence            3899999999999999999998  99999999986

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.49  E-value=3.9e-07  Score=91.33  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .||||||||++|+++|++|+++  |.+|+|||+.+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~   36 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGE   36 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            4899999999999999999998  88999999985

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.49  E-value=1.4e-07  Score=89.55  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+++.|||||||++|+++|..|.+.+.+|+|||+++
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~   42 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEK   42 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSS
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCC
Confidence            355899999999999999999977899999999985

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.49  E-value=7.3e-07  Score=87.63  Aligned_cols=32  Identities=41%  Similarity=0.663  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHH-CCCeEEEEec
Q 013476           71 PLDILVIGGGATGCGVALDAAT-RGLRVGLVER  102 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~-~G~~V~liEk  102 (442)
                      ++||+|||||++|+++|+.|++ .|++|+|||+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            5899999999999999999999 9999999994

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.49  E-value=5.4e-07  Score=88.20  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   39 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNE   39 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            345899999999999999999999999999999985

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.48  E-value=4.7e-07  Score=88.73  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .||||||||++|+++|+.|++.  |.+|+|||+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   71 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGE   71 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            6999999999999999999996  99999999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.46  E-value=7.8e-07  Score=86.75  Aligned_cols=35  Identities=40%  Similarity=0.581  Sum_probs=33.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ++||+|||||++|+++|..|++.|++|+|||+..+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~   40 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEV   40 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            58999999999999999999999999999999863

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.44  E-value=1.8e-07  Score=88.33  Aligned_cols=33  Identities=18%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.||||||||++|+++|..|++.| +|+|||++.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~   40 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEP   40 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCC
Confidence            479999999999999999999999 999999976

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.43  E-value=3.7e-07  Score=88.13  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      +.+||||||||++|+++|..|++.|.  +|+|||+..
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~   39 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   39 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCC
Confidence            35899999999999999999999998  799999874

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.39  E-value=6.3e-07  Score=88.03  Aligned_cols=34  Identities=38%  Similarity=0.683  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..+||||||||++|+++|++|++. ++|+|||+++
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~  140 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERG  140 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTS
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCC
Confidence            458999999999999999999999 9999999986

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.35  E-value=1.2e-06  Score=83.21  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRG--LRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~  104 (442)
                      ++||||||||++|+++|+.|++.|  .+|+|+|++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            489999999999999999999999  4699999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.34  E-value=1.7e-07  Score=90.69  Aligned_cols=33  Identities=24%  Similarity=0.514  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHH---CCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAAT---RGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~---~G~~V~liEk~~  104 (442)
                      .||||||||++|+++|+.|++   .|++|+|||+.+
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            699999999999999999999   899999999975

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.34  E-value=5e-06  Score=79.46  Aligned_cols=66  Identities=14%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCCC
Q 013476          235 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQNV  307 (442)
Q Consensus       235 ~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~~  307 (442)
                      ...+.+.++++|++++++++|+++..++ + ++.+|++.   +|+  .+.||.||+|+|...+ .+++.+|+..
T Consensus       187 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-~v~~V~~~---dG~--~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (404)
T 3fg2_P          187 SSYFHDRHSGAGIRMHYGVRATEIAAEG-D-RVTGVVLS---DGN--TLPCDLVVVGVGVIPNVEIAAAAGLPT  253 (404)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEET---TSC--EEECSEEEECCCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHhCCcEEEECCEEEEEEecC-C-cEEEEEeC---CCC--EEEcCEEEECcCCccCHHHHHhCCCCC
Confidence            3455566778999999999999998876 5 88888773   444  7899999999998654 4777777653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.34  E-value=2.2e-06  Score=90.89  Aligned_cols=35  Identities=34%  Similarity=0.563  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..+||||||+|++|+++|+.|++.|++|+|||+++
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~  161 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERA  161 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            35899999999999999999999999999999975

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.33  E-value=8.8e-06  Score=82.00  Aligned_cols=35  Identities=29%  Similarity=0.540  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...+||+|||||++|+++|..|++.|++|+|||+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            45699999999999999999999999999999984

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.31  E-value=2.6e-07  Score=91.49  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=35.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~-~~~  107 (442)
                      +..+||+|||||++||+||+.|+++| ++|+|+|+.+ +++
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            44589999999999999999999999 9999999997 444

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.30  E-value=7.3e-07  Score=85.47  Aligned_cols=33  Identities=24%  Similarity=0.471  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe--EEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR--VGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~--V~liEk~~  104 (442)
                      .||||||||++|+++|+.|+++|.+  |+|||+.+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~   37 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEP   37 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCC
Confidence            5899999999999999999999987  99999975

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.30  E-value=6e-07  Score=84.21  Aligned_cols=39  Identities=23%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc-C-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE-D-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~-~-~~~  107 (442)
                      ...+||+|||||++||++|+.|+++|++|+|+|+. . +++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGG   82 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG   82 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBT
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCC
Confidence            34689999999999999999999999999999998 5 443

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.30  E-value=6.4e-07  Score=88.09  Aligned_cols=40  Identities=25%  Similarity=0.513  Sum_probs=35.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG  108 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g  108 (442)
                      ++.+||+|||||++||+||+.|+++|++|+|+|+....+|
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            3458999999999999999999999999999999974444

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.29  E-value=6.8e-07  Score=86.13  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=34.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~-~~~  107 (442)
                      .+++||+|||||++||+||++|+++| ++|+|+|+.+ +++
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG   44 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCC
Confidence            34689999999999999999999999 8999999986 444

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.28  E-value=5.5e-07  Score=85.15  Aligned_cols=39  Identities=33%  Similarity=0.517  Sum_probs=35.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      +..+||+|||||++|+++|++|+++|++|+|+|+.+ +++
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   66 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG   66 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence            456999999999999999999999999999999986 443

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.28  E-value=1e-05  Score=79.09  Aligned_cols=69  Identities=13%  Similarity=0.069  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH---HhhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS---VRKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~---l~~~~g~~  306 (442)
                      .+.+.+++.|++++++++++++..++++ ....|.+.+..+++...+.+|.||+|+|...+.   +++.+|+.
T Consensus       229 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~  300 (478)
T 1v59_A          229 ATQKFLKKQGLDFKLSTKVISAKRNDDK-NVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLE  300 (478)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEEETTT-TEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCC
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEecCC-CeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCce
Confidence            4455667789999999999999872112 344566653223445679999999999986532   34544443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.27  E-value=9.1e-07  Score=84.67  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      .||||||||++|+++|++|+++|+  +|+|||+++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~   36 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK   36 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            589999999999999999999999  899999975

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.27  E-value=6e-07  Score=85.71  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=34.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEeccC-CCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVERED-FSSG  108 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk~~-~~~g  108 (442)
                      .++||+|||||++||++|+.|+++ |++|+|+|+++ +++.
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~   46 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN   46 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCe
Confidence            369999999999999999999999 99999999996 4443

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.27  E-value=7.5e-06  Score=77.67  Aligned_cols=63  Identities=17%  Similarity=0.036  Sum_probs=46.2

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      ..+.+.+++.|++++++++|+++..+++  .+ .|++   .+|  ..+.||.||+|+|...+ .+++.+|+.
T Consensus       191 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~---~~g--~~i~~d~vv~a~G~~p~~~l~~~~g~~  254 (384)
T 2v3a_A          191 KAVQAGLEGLGVRFHLGPVLASLKKAGE--GL-EAHL---SDG--EVIPCDLVVSAVGLRPRTELAFAAGLA  254 (384)
T ss_dssp             HHHHHHHHTTTCEEEESCCEEEEEEETT--EE-EEEE---TTS--CEEEESEEEECSCEEECCHHHHHTTCC
T ss_pred             HHHHHHHHHcCCEEEeCCEEEEEEecCC--EE-EEEE---CCC--CEEECCEEEECcCCCcCHHHHHHCCCC
Confidence            4455666778999999999999987653  32 3444   344  37899999999998765 377777655

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.26  E-value=2.9e-06  Score=81.91  Aligned_cols=48  Identities=15%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ++.|++++.+++|+++..+..  .+   .+....++....+.+|++|+|||..
T Consensus        68 ~~~~i~~~~~~~V~~id~~~~--~~---~~~~~~~~~~~~~~yd~lVIATGs~  115 (437)
T 4eqs_A           68 DRKQITVKTYHEVIAINDERQ--TV---SVLNRKTNEQFEESYDKLILSPGAS  115 (437)
T ss_dssp             HHHCCEEEETEEEEEEETTTT--EE---EEEETTTTEEEEEECSEEEECCCEE
T ss_pred             HhcCCEEEeCCeEEEEEccCc--EE---EEEeccCCceEEEEcCEEEECCCCc
Confidence            457999999999999987663  33   3333345566789999999999974

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.25  E-value=1.3e-05  Score=73.80  Aligned_cols=57  Identities=12%  Similarity=0.070  Sum_probs=44.2

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCC-CceEEEEcCEEEEccCCCh
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS-GKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~-g~~~~i~a~~VVlAtG~~s  296 (442)
                      +.+.+++.|++++++++++++..++ + ++.+|++.+..+ |+...+.+|.||+|+|...
T Consensus       190 l~~~l~~~gv~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          190 LMDKVENGNIILHTNRTLEEVTGDQ-M-GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             HHHHHHTSSEEEECSCEEEEEEECS-S-SEEEEEEECCTTCCCCEEEECSEEEECSCEEE
T ss_pred             HHHhcccCCeEEEcCceeEEEEcCC-C-ceEEEEEEeccCCCceEEEEcCEEEEEeCCCC
Confidence            3445567899999999999998876 4 788888874223 5556899999999999754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.25  E-value=7.6e-07  Score=88.25  Aligned_cols=35  Identities=34%  Similarity=0.519  Sum_probs=33.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ++||||||||++||+||+.|+++|++|+|+|+++.
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   38 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   38 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            48999999999999999999999999999999863

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.24  E-value=5.4e-07  Score=87.67  Aligned_cols=38  Identities=26%  Similarity=0.486  Sum_probs=34.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      .++||+|||||++||+||++|+++|++|+|+|++. +++
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            35899999999999999999999999999999986 443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.23  E-value=6.5e-07  Score=86.38  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +.+||+|||||++|+++|+.|+++|++|+||||..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            44899999999999999999999999999999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.21  E-value=1.5e-05  Score=76.74  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=47.8

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEE--cCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIK--DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~--~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      .+.+.+++.|++++++++++++..  ++ + ++.+|++.   +|  ..+.||.||+|+|...+ .+++.+|+.
T Consensus       196 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~-~v~~v~~~---~G--~~i~~D~Vv~a~G~~p~~~l~~~~gl~  261 (431)
T 1q1r_A          196 FYEHLHREAGVDIRTGTQVCGFEMSTDQ-Q-KVTAVLCE---DG--TRLPADLVIAGIGLIPNCELASAAGLQ  261 (431)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECTTT-C-CEEEEEET---TS--CEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHHHhCCeEEEeCCEEEEEEeccCC-C-cEEEEEeC---CC--CEEEcCEEEECCCCCcCcchhhccCCC
Confidence            445566778999999999999987  44 5 77777663   44  37899999999997643 577777665

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.18  E-value=5.2e-05  Score=72.98  Aligned_cols=64  Identities=13%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ  305 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~  305 (442)
                      ..+.+.+.++++|+++++++.|++++.   + ++   .+++ .+|+..++.+|.||+|+|.-.+.++...+.
T Consensus       202 ~~~~l~~~l~~~GV~~~~~~~v~~v~~---~-~~---~~~~-~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~  265 (430)
T 3hyw_A          202 SKRLVEDLFAERNIDWIANVAVKAIEP---D-KV---IYED-LNGNTHEVPAKFTMFMPSFQGPEVVASAGD  265 (430)
T ss_dssp             HHHHHHHHHHHTTCEEECSCEEEEECS---S-EE---EEEC-TTSCEEEEECSEEEEECEEECCHHHHTTCT
T ss_pred             HHHHHHHHHHhCCeEEEeCceEEEEeC---C-ce---EEEe-eCCCceEeecceEEEeccCCCchHHHhccc
Confidence            445566777889999999999998843   2 33   4444 456677899999999999877677766543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.17  E-value=9.2e-07  Score=83.38  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=33.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      +||+|||||++|+++|++|+++|++|+|+|++. +++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            799999999999999999999999999999986 443

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.15  E-value=1e-05  Score=77.45  Aligned_cols=64  Identities=13%  Similarity=0.039  Sum_probs=48.1

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQNV  307 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~~  307 (442)
                      ..+.+.++++|++|+++++++++..++   ++.+|++   .+|+  .+.||.||+|+|...+ .+++.+|+..
T Consensus       189 ~~l~~~l~~~GV~i~~~~~v~~i~~~~---~~~~v~~---~dg~--~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (410)
T 3ef6_A          189 AWLRGLLTELGVQVELGTGVVGFSGEG---QLEQVMA---SDGR--SFVADSALICVGAEPADQLARQAGLAC  253 (410)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEECSS---SCCEEEE---TTSC--EEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEeccC---cEEEEEE---CCCC--EEEcCEEEEeeCCeecHHHHHhCCCcc
Confidence            345556677899999999999997754   5556666   3443  7899999999998664 5777777653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.14  E-value=1.6e-06  Score=85.52  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=34.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      .+||+|||||++||++|+.|+++|++|+|+|+.+..+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            4899999999999999999999999999999997433

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.14  E-value=1.8e-06  Score=81.86  Aligned_cols=36  Identities=25%  Similarity=0.555  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      +++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~   37 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   37 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            358999999999999999999999999999999863

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.13  E-value=2.5e-05  Score=71.94  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCC
Q 013476          243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ  305 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~  305 (442)
                      ++.|++++++++++++..++ + ++.+|.+.+..+|+...+.+|.||+|+|...+ .+++.+|+
T Consensus       201 ~~~gv~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl  262 (319)
T 3cty_A          201 KKRNIPYIMNAQVTEIVGDG-K-KVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGV  262 (319)
T ss_dssp             HHTTCCEECSEEEEEEEESS-S-SEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCC
T ss_pred             hcCCcEEEcCCeEEEEecCC-c-eEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccc
Confidence            35799999999999998875 4 78888887533565567999999999987543 45555444

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.13  E-value=9.4e-07  Score=86.79  Aligned_cols=60  Identities=20%  Similarity=0.079  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++. ++++++++++++..+++  ++. |.+.+ .+|+...+.+|.||+|+|...
T Consensus       215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~--~v~-v~~~~-~~G~~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKED--AVE-VIYFD-KSGQKTTESFQYVLAATGRKA  274 (492)
T ss_dssp             HHHHHHHHHHHHTT-SEEETTCEEEEEEECSS--SEE-EEEEC-TTCCEEEEEESEEEECSCCEE
T ss_pred             HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCC--EEE-EEEEe-CCCceEEEECCEEEEeeCCcc
Confidence            46667777777777 99999999999988764  443 44432 255556899999999999854

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.08  E-value=3e-06  Score=82.99  Aligned_cols=39  Identities=31%  Similarity=0.370  Sum_probs=34.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC-CCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVERED-FSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~-~~~  107 (442)
                      ++.+||+|||||++||++|++|+++| .+|+|+|+.+ +++
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG   47 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSG
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Confidence            45689999999999999999999998 7999999996 444

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.08  E-value=5.9e-05  Score=73.41  Aligned_cols=67  Identities=15%  Similarity=0.095  Sum_probs=44.9

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH-H--hhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS-V--RKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~-l--~~~~g~~  306 (442)
                      .+.+.+++.|++++++++++++..+++  .+ .|.+.+..+|+...+.+|.||+|+|...+. +  ++.+|+.
T Consensus       215 ~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~  284 (464)
T 2eq6_A          215 LLRRALEKEGIRVRTKTKAVGYEKKKD--GL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVK  284 (464)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEEETT--EE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCC
T ss_pred             HHHHHHHhcCCEEEcCCEEEEEEEeCC--EE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCce
Confidence            345556778999999999999987763  43 355542111544579999999999975532 1  3445544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.06  E-value=3.8e-05  Score=72.05  Aligned_cols=62  Identities=16%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      .++.|++++++++++++..++ + ++.+|++.. .+|+...+.+|.||+|+|...+ .+++.+++.
T Consensus       212 ~~~~gv~i~~~~~v~~i~~~~-~-~v~~v~~~~-~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~  274 (360)
T 3ab1_A          212 RANGTIDVYLETEVASIEESN-G-VLTRVHLRS-SDGSKWTVEADRLLILIGFKSNLGPLARWDLE  274 (360)
T ss_dssp             HHHTSEEEESSEEEEEEEEET-T-EEEEEEEEE-TTCCEEEEECSEEEECCCBCCSCGGGGGSSCC
T ss_pred             hhcCceEEEcCcCHHHhccCC-C-ceEEEEEEe-cCCCeEEEeCCEEEECCCCCCCHHHHHhhccc
Confidence            456799999999999998876 5 888888863 4565568999999999997543 356655443

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.05  E-value=2.8e-06  Score=83.59  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+...+.+.++++|++++++++++++..++++ .+ .|++   .+|+. .+.+|.||+|+|...+
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~-~v~~---~~g~~-~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDK-NL-SIHL---SDGRI-YEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTT-CE-EEEE---TTSCE-EEEESEEEECCCBCCT
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCc-eE-EEEE---CCCcE-EEECCEEEECCCCCcC
Confidence            466777888889999999999999999876543 32 3444   34542 4899999999998654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.04  E-value=7.6e-05  Score=72.85  Aligned_cols=68  Identities=13%  Similarity=0.026  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HH--hhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SV--RKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l--~~~~g~~  306 (442)
                      .+.+.+++.|++++++++|+++..++++ .+ .|.+.+..+++...+.+|.||+|+|...+ .+  ++.+|+.
T Consensus       225 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~  295 (474)
T 1zmd_A          225 NFQRILQKQGFKFKLNTKVTGATKKSDG-KI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIE  295 (474)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEECTTS-CE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCC
T ss_pred             HHHHHHHHCCCEEEeCceEEEEEEcCCc-eE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCc
Confidence            4455667789999999999999887643 23 34443211334457999999999998653 22  4555654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.04  E-value=7.6e-05  Score=68.31  Aligned_cols=50  Identities=16%  Similarity=0.262  Sum_probs=40.6

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .|++++++++++++..++ + ++.+|++++..+|+...+.+|.||+|+|.-.
T Consensus       193 ~gv~v~~~~~v~~i~~~~-~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  242 (310)
T 1fl2_A          193 KNVDIILNAQTTEVKGDG-S-KVVGLEYRDRVSGDIHNIELAGIFVQIGLLP  242 (310)
T ss_dssp             TTEEEESSEEEEEEEESS-S-SEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred             CCeEEecCCceEEEEcCC-C-cEEEEEEEECCCCcEEEEEcCEEEEeeCCcc
Confidence            589999999999998765 5 8888988763356556899999999998643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=5.4e-05  Score=74.01  Aligned_cols=65  Identities=8%  Similarity=0.041  Sum_probs=45.0

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HH-hhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SV-RKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l-~~~~g~~  306 (442)
                      .+.+.+++.|++++++++|+++..++++ ++..|.+   .+|+ ..+.+|.||+|+|...+ .| ++.+|+.
T Consensus       231 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~~v~~---~~G~-~~i~~D~vv~a~G~~p~~~l~l~~~gl~  297 (479)
T 2hqm_A          231 TITDHYVKEGINVHKLSKIVKVEKNVET-DKLKIHM---NDSK-SIDDVDELIWTIGRKSHLGMGSENVGIK  297 (479)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECC-C-CCEEEEE---TTSC-EEEEESEEEECSCEEECCCSSGGGGTCC
T ss_pred             HHHHHHHhCCeEEEeCCEEEEEEEcCCC-cEEEEEE---CCCc-EEEEcCEEEECCCCCCccccChhhcCce
Confidence            4455567789999999999999876544 3444555   3442 47999999999997543 34 4555554

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.04  E-value=4.1e-05  Score=74.86  Aligned_cols=62  Identities=11%  Similarity=0.026  Sum_probs=44.7

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      ..+.+.+++.|++++++++++++..+  + ++..|..    ++  ..+.||.||+|+|...+ .+++.+|+.
T Consensus       231 ~~l~~~l~~~Gv~i~~~~~v~~i~~~--~-~v~~v~~----~~--~~i~~D~vi~a~G~~p~~~~l~~~g~~  293 (480)
T 3cgb_A          231 EYIYKEADKHHIEILTNENVKAFKGN--E-RVEAVET----DK--GTYKADLVLVSVGVKPNTDFLEGTNIR  293 (480)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEES--S-BEEEEEE----TT--EEEECSEEEECSCEEESCGGGTTSCCC
T ss_pred             HHHHHHHHHcCcEEEcCCEEEEEEcC--C-cEEEEEE----CC--CEEEcCEEEECcCCCcChHHHHhCCcc
Confidence            34556667789999999999999875  3 6655544    22  37999999999998653 456655544

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.04  E-value=2.9e-06  Score=82.69  Aligned_cols=68  Identities=18%  Similarity=0.068  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH--H-hhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--V-RKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~--l-~~~~g~~  306 (442)
                      ..+...+.+.+++.|++++++++|+++..+++  . ..|++   .+|+. .+.+|.||+|+|...+.  | ++.+|+.
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~v~~---~~G~~-~i~~D~vv~a~G~~p~~~~l~~~~~g~~  277 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERDAQ--G-TTLVA---QDGTR-LEGFDSVIWAVGRAPNTRDLGLEAAGIE  277 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEETT--E-EEEEE---TTCCE-EEEESEEEECSCEEESCTTSCHHHHTCC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--e-EEEEE---eCCcE-EEEcCEEEECCCCCcCCCCCCchhcCCc
Confidence            45667788888899999999999999987664  3 23444   34432 78999999999986532  3 4555554

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.04  E-value=8.4e-05  Score=72.11  Aligned_cols=55  Identities=15%  Similarity=0.066  Sum_probs=40.2

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+.+.+++.|++++++++++++..+++  .+ .|.+..  +|+...+.+|.||+|+|...
T Consensus       216 ~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~--~g~~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          216 IIKKRLKKKGVEVVTNALAKGAEERED--GV-TVTYEA--NGETKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             HHHHHHHHTTCEEEESEEEEEEEEETT--EE-EEEEEE--TTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEeCC--eE-EEEEEe--CCceeEEEcCEEEECcCCCc
Confidence            344556778999999999999987663  43 244432  33456799999999999865

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.03  E-value=6.1e-05  Score=69.81  Aligned_cols=64  Identities=17%  Similarity=0.044  Sum_probs=47.0

Q ss_pred             HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      +.+++.|+++++++.+.++..+  + ++.+|+++...+|+...+.+|.||+|+|...+ .+++.+++.
T Consensus       199 ~~l~~~gv~v~~~~~v~~i~~~--~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~  263 (335)
T 2zbw_A          199 KAHEEGRLEVLTPYELRRVEGD--E-RVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLA  263 (335)
T ss_dssp             HHHHTTSSEEETTEEEEEEEES--S-SEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCC
T ss_pred             hccccCCeEEecCCcceeEccC--C-CeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhccee
Confidence            3445679999999999999874  3 67778886422565568999999999998654 366655443

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.03  E-value=3.4e-06  Score=83.03  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..+||+|||||++||++|+.|+++|.+|+|+|+.+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            46899999999999999999999999999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.03  E-value=5.6e-05  Score=70.02  Aligned_cols=50  Identities=18%  Similarity=0.133  Sum_probs=42.1

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .|+++++++++.++..++ + ++.+|++++..+++...+.+|.||+|+|...
T Consensus       222 ~gv~i~~~~~v~~i~~~~-~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  271 (338)
T 3itj_A          222 EKIEILYNTVALEAKGDG-K-LLNALRIKNTKKNEETDLPVSGLFYAIGHTP  271 (338)
T ss_dssp             TTEEEECSEEEEEEEESS-S-SEEEEEEEETTTTEEEEEECSEEEECSCEEE
T ss_pred             CCeEEeecceeEEEEccc-C-cEEEEEEEECCCCceEEEEeCEEEEEeCCCC
Confidence            489999999999999877 4 7888998864456667899999999999754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.03  E-value=3.9e-05  Score=74.29  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...+|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~  182 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD  182 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc
Confidence            45799999999999999999999999999999864

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.02  E-value=4.5e-06  Score=77.33  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +||+|||||.+|+.+|+.|+++|++|+|||+..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            699999999999999999999999999999975

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.00  E-value=5.8e-05  Score=73.27  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~  200 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD  200 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence            3579999999999999999999999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.00  E-value=2.7e-06  Score=82.60  Aligned_cols=68  Identities=12%  Similarity=0.142  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH--H-hhhhCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--V-RKLADQN  306 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~--l-~~~~g~~  306 (442)
                      ..+...+.+.+++.|++++++++++++..++++ .+ .|++   .+|+  .+.+|.||+|+|...+.  | ++.+|+.
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~-~v~~---~~g~--~i~~D~vv~a~G~~p~~~~l~~~~~gl~  278 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDG-SL-TLEL---EDGR--SETVDCLIWAIGREPANDNINLEAAGVK  278 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTS-CE-EEEE---TTSC--EEEESEEEECSCEEESCTTSCHHHHTCC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCc-EE-EEEE---CCCc--EEEcCEEEECCCCCcCCCCCCchhcCce
Confidence            456778888888999999999999999886543 32 3444   3443  78999999999986532  3 4555654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.00  E-value=6.5e-05  Score=72.79  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  200 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD  200 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            4589999999999999999999999999999874

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.00  E-value=3.4e-06  Score=79.99  Aligned_cols=51  Identities=16%  Similarity=0.004  Sum_probs=41.0

Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .++...+...|.+.+++.|++++++++|+++....                   .+.||.||.|+|.+|.
T Consensus        94 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-------------------~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           94 GVERRGLVHALRDKCRSQGIAIRFESPLLEHGELP-------------------LADYDLVVLANGVNHK  144 (381)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGCC-------------------GGGCSEEEECCGGGGG
T ss_pred             eecHHHHHHHHHHHHHHCCCEEEeCCEeccchhcc-------------------cccCCEEEECCCCCch
Confidence            35567888999999999999999999998774310                   2468999999999995

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.98  E-value=8e-05  Score=72.43  Aligned_cols=34  Identities=32%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~  199 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALED  199 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            3579999999999999999999999999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.96  E-value=6.8e-06  Score=79.62  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.+.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~  156 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDR  156 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            458999999999999999999999999999999863

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.95  E-value=6.3e-05  Score=73.41  Aligned_cols=65  Identities=17%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCCC
Q 013476          235 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQNV  307 (442)
Q Consensus       235 ~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~~  307 (442)
                      ...+.+.+++.|++++++++|+++..++ + ++. |++.   +|+  .+.||.||+|+|...+ .+++.+|+..
T Consensus       205 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-~v~-v~~~---~g~--~i~aD~Vv~a~G~~p~~~l~~~~gl~~  270 (472)
T 3iwa_A          205 SQMLRHDLEKNDVVVHTGEKVVRLEGEN-G-KVA-RVIT---DKR--TLDADLVILAAGVSPNTQLARDAGLEL  270 (472)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEESS-S-BEE-EEEE---SSC--EEECSEEEECSCEEECCHHHHHHTCCB
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEccC-C-eEE-EEEe---CCC--EEEcCEEEECCCCCcCHHHHHhCCccC
Confidence            3455566678899999999999998865 4 665 5553   343  7899999999998653 5777777653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.93  E-value=4.4e-06  Score=81.24  Aligned_cols=57  Identities=19%  Similarity=0.047  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+...+.+.+++.|++++++++|+++.. +   +   +.+.. .+|+...+.+|.||+|+|...
T Consensus       212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~---~---v~v~~-~~G~~~~i~~D~vv~a~G~~p  268 (458)
T 1lvl_A          212 SELTAPVAESLKKLGIALHLGHSVEGYEN-G---C---LLAND-GKGGQLRLEADRVLVAVGRRP  268 (458)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEET-T---E---EEEEC-SSSCCCEECCSCEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEe-C---C---EEEEE-CCCceEEEECCEEEECcCCCc
Confidence            45667778888889999999999999975 3   4   23332 344335789999999999754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.92  E-value=7.3e-05  Score=72.75  Aligned_cols=50  Identities=18%  Similarity=0.018  Sum_probs=39.2

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .|++++++++|+++..+++  . ..|++++..+|+...+.+|.||+|||...+
T Consensus       329 ~~v~i~~~~~v~~v~~~~~--~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQ--G-IELALRDAGSGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEETT--E-EEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEecCC--E-EEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence            5999999999999988764  3 346666544676667999999999997543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.92  E-value=0.00011  Score=70.18  Aligned_cols=59  Identities=19%  Similarity=0.135  Sum_probs=43.5

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      ..+.+.++++|++++++++++++. +  + .   |++   .+|  ..+.||.||+|+|...+ .+++.+|+.
T Consensus       191 ~~l~~~l~~~GV~i~~~~~v~~i~-~--~-~---v~~---~~g--~~i~~D~vi~a~G~~p~~~l~~~~gl~  250 (408)
T 2gqw_A          191 DFVARYHAAQGVDLRFERSVTGSV-D--G-V---VLL---DDG--TRIAADMVVVGIGVLANDALARAAGLA  250 (408)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEE-T--T-E---EEE---TTS--CEEECSEEEECSCEEECCHHHHHHTCC
T ss_pred             HHHHHHHHHcCcEEEeCCEEEEEE-C--C-E---EEE---CCC--CEEEcCEEEECcCCCccHHHHHhCCCC
Confidence            344556677899999999999998 3  3 3   344   344  37899999999998654 577777765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.92  E-value=9.3e-05  Score=72.14  Aligned_cols=58  Identities=14%  Similarity=0.089  Sum_probs=41.5

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .+.+.+++.|+++++++++.++..+++  .+ .|.+.+..+|+...+.+|.||+|+|...+
T Consensus       223 ~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          223 QFQRSLEKQGMKFKLKTKVVGVDTSGD--GV-KLTVEPSAGGEQTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHHHHHHSSCCEECSEEEEEEECSSS--SE-EEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEEcCC--eE-EEEEEecCCCcceEEECCEEEECCCCCcC
Confidence            345566778999999999999987663  33 34554312344468999999999998653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.92  E-value=5.9e-06  Score=80.32  Aligned_cols=58  Identities=12%  Similarity=0.031  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..+...+.+.+++.|++++++++|+++..+++  .+ .+.+   .++  ..+.+|.||+|+|...+
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~--~v-~v~~---~~g--~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK--GA-RVEL---EGG--EVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETT--EE-EEEE---TTS--CEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--EE-EEEE---CCC--eEEEcCEEEECcCCCcC
Confidence            56677888888899999999999999988763  33 2332   233  37899999999998764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.92  E-value=0.00011  Score=72.33  Aligned_cols=63  Identities=13%  Similarity=0.100  Sum_probs=44.1

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH-H--hhhhCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS-V--RKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~-l--~~~~g~~  306 (442)
                      ..+.+.+++.|++|+++++|+++..+++  ++   .+.. .+|  ..+.||.||+|+|...+. +  ++.+|+.
T Consensus       227 ~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~v---~v~~-~~g--~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~  292 (499)
T 1xdi_A          227 LVLEESFAERGVRLFKNARAASVTRTGA--GV---LVTM-TDG--RTVEGSHALMTIGSVPNTSGLGLERVGIQ  292 (499)
T ss_dssp             HHHHHHHHHTTCEEETTCCEEEEEECSS--SE---EEEE-TTS--CEEEESEEEECCCEEECCSSSCTTTTTCC
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEeCC--EE---EEEE-CCC--cEEEcCEEEECCCCCcCCCcCCchhcCce
Confidence            3455666788999999999999988764  43   2322 333  378999999999987643 3  4444443

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.91  E-value=0.00019  Score=69.93  Aligned_cols=66  Identities=8%  Similarity=0.026  Sum_probs=44.3

Q ss_pred             HHHHHH-HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HH--hhhhCCC
Q 013476          237 GLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SV--RKLADQN  306 (442)
Q Consensus       237 ~l~~~~-~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l--~~~~g~~  306 (442)
                      .+.+.+ ++.|++++++++|+++..+++  .+ .|.+.+ .+|+...+.+|.||+|+|...+ .+  ++.+|+.
T Consensus       220 ~l~~~l~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~-~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~  289 (468)
T 2qae_A          220 ALVGALAKNEKMKFMTSTKVVGGTNNGD--SV-SLEVEG-KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVA  289 (468)
T ss_dssp             HHHHHHHHHTCCEEECSCEEEEEEECSS--SE-EEEEEC-C---EEEEEESEEEECSCEEECCTTSCHHHHTCC
T ss_pred             HHHHHHhhcCCcEEEeCCEEEEEEEcCC--eE-EEEEEc-CCCceEEEECCEEEECCCcccCCCCCCchhcCCc
Confidence            445556 778999999999999988764  32 344432 1343457999999999998653 23  4555554

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.89  E-value=0.00021  Score=65.58  Aligned_cols=59  Identities=12%  Similarity=0.006  Sum_probs=47.1

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      .|+++++++++.++..++   ++.+|++.+..+|+...+.+|.||+|+|...+ .+++.+|+.
T Consensus       203 ~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~  262 (323)
T 3f8d_A          203 PNVEFVLNSVVKEIKGDK---VVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIE  262 (323)
T ss_dssp             TTEEEECSEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCC
T ss_pred             CCcEEEeCCEEEEEeccC---ceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCee
Confidence            589999999999998763   67788887644566668999999999998665 677776655

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.89  E-value=1e-05  Score=79.06  Aligned_cols=35  Identities=23%  Similarity=0.424  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..+||+|||||++|+++|+.|++.|+ +|+|+|+..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~   38 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   38 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            35899999999999999999999999 899999986

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.88  E-value=0.00013  Score=71.65  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  209 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN  209 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCC
Confidence            3579999999999999999999999999999975

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.88  E-value=0.00011  Score=72.07  Aligned_cols=63  Identities=13%  Similarity=0.093  Sum_probs=44.2

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH--HH-hhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD--SV-RKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~--~l-~~~~g~~  306 (442)
                      .+.+.++++|++|+++++|+++..++++  ...|++   .+|+  .+.||.||+|+|...+  .| ++.+|+.
T Consensus       240 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~--~~~v~~---~~G~--~i~~D~vv~a~G~~p~~~~L~l~~~gl~  305 (495)
T 2wpf_A          240 EVTKQLTANGIEIMTNENPAKVSLNTDG--SKHVTF---ESGK--TLDVDVVMMAIGRIPRTNDLQLGNVGVK  305 (495)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEECTTS--CEEEEE---TTSC--EEEESEEEECSCEEECCGGGTGGGTTCC
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCc--eEEEEE---CCCc--EEEcCEEEECCCCcccccccchhhcCcc
Confidence            4455667789999999999999887543  234544   3443  7999999999998543  23 4555544

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.88  E-value=0.00021  Score=69.54  Aligned_cols=65  Identities=15%  Similarity=0.129  Sum_probs=44.5

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HH--hhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SV--RKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l--~~~~g~~  306 (442)
                      .+.+.++++|++++++++++++..+++  .+ .+.+.  .+|+...+.+|.||+|+|...+ .+  ++.+|+.
T Consensus       217 ~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~  284 (464)
T 2a8x_A          217 EIEKQFKKLGVTILTATKVESIADGGS--QV-TVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVA  284 (464)
T ss_dssp             HHHHHHHHHTCEEECSCEEEEEEECSS--CE-EEEEE--SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCC
T ss_pred             HHHHHHHHcCCEEEeCcEEEEEEEcCC--eE-EEEEE--cCCceEEEEcCEEEECCCCCccCCCCCchhcCCc
Confidence            344556678999999999999987663  33 24443  2454468999999999997543 22  4555554

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.86  E-value=0.00027  Score=64.57  Aligned_cols=57  Identities=16%  Similarity=0.070  Sum_probs=43.2

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhh
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLA  303 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~  303 (442)
                      .|+++++++++.++..++ + ++.+|++++..+|+...+.+|.||+|+|.-.+ .+++.+
T Consensus       192 ~gv~v~~~~~v~~i~~~~-~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~  249 (311)
T 2q0l_A          192 DKIEFLTPYVVEEIKGDA-S-GVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQE  249 (311)
T ss_dssp             TTEEEETTEEEEEEEEET-T-EEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCT
T ss_pred             CCeEEEeCCEEEEEECCC-C-cEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcc
Confidence            689999999999998775 3 77788887433565568999999999997543 455543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.85  E-value=0.00012  Score=70.93  Aligned_cols=53  Identities=15%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.+++.|++++++++|+++..++ + ++..|..    +|  ..+.||.||+|+|...
T Consensus       195 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~-~v~~v~~----~g--~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          195 DILAKDYEAHGVNLVLGSKVAAFEEVD-D-EIITKTL----DG--KEIKSDIAILCIGFRP  247 (452)
T ss_dssp             HHHHHHHHHTTCEEEESSCEEEEEEET-T-EEEEEET----TS--CEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHCCCEEEcCCeeEEEEcCC-C-eEEEEEe----CC--CEEECCEEEECcCCCC
Confidence            345566678899999999999998754 4 7755543    33  3789999999999754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.85  E-value=7.1e-05  Score=72.69  Aligned_cols=34  Identities=29%  Similarity=0.596  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  204 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE  204 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC
Confidence            3579999999999999999999999999999975

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.84  E-value=0.00024  Score=65.42  Aligned_cols=49  Identities=14%  Similarity=0.123  Sum_probs=39.3

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .|++++++++++++..+  + ++.+|++++..+|+...+.+|.||+|+|.-.
T Consensus       201 ~gv~i~~~~~v~~i~~~--~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  249 (325)
T 2q7v_A          201 PKMKFIWDTAVEEIQGA--D-SVSGVKLRNLKTGEVSELATDGVFIFIGHVP  249 (325)
T ss_dssp             TTEEEECSEEEEEEEES--S-SEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred             CCceEecCCceEEEccC--C-cEEEEEEEECCCCcEEEEEcCEEEEccCCCC
Confidence            58999999999999875  3 7788888753356556899999999998654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.82  E-value=0.00028  Score=69.06  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  207 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSG  207 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC
Confidence            4579999999999999999999999999999975

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.82  E-value=9.6e-05  Score=72.27  Aligned_cols=34  Identities=38%  Similarity=0.572  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~  218 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD  218 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC
Confidence            3579999999999999999999999999999864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.81  E-value=0.00019  Score=69.54  Aligned_cols=52  Identities=6%  Similarity=-0.066  Sum_probs=39.5

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.+++.|++|+++++|+++..++ + ++ .|..   .++   .+.||.||+|+|...
T Consensus       193 ~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-~v-~v~~---~~g---~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          193 AEVQKSLEKQAVIFHFEETVLGIEETA-N-GI-VLET---SEQ---EISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHHHTTTEEEEETCCEEEEEECS-S-CE-EEEE---SSC---EEEESEEEECSCCBC
T ss_pred             HHHHHHHHHcCCEEEeCCEEEEEEccC-C-eE-EEEE---CCC---EEEeCEEEECcCCCC
Confidence            455566677899999999999998766 3 55 4544   222   799999999999854

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.80  E-value=2e-05  Score=81.01  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...+||+|||||++|+++|+.|+++|++|+|||+...
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~  423 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK  423 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3458999999999999999999999999999999863

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.79  E-value=0.0003  Score=70.27  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  184 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD  184 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            3589999999999999999999999999999864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.78  E-value=2e-05  Score=80.18  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...+||+|||+|++|+++|+.|++.|++|+|+|+...
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~  141 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  141 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3458999999999999999999999999999999863

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.77  E-value=2.3e-05  Score=81.22  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ...||+|||+|++||++|+.|+++|++|+|+|+...
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~  312 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  312 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence            457999999999999999999999999999999863

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.77  E-value=0.00035  Score=68.13  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.+++.|++++++++++++..+++  .+. |++.+ .+| ...+.+|.||+|+|...
T Consensus       225 ~~l~~~l~~~Gv~v~~~~~v~~i~~~~~--~~~-v~~~~-~~g-~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          225 KEAQKILTKQGLKILLGARVTGTEVKNK--QVT-VKFVD-AEG-EKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             HHHHHHHHHTTEEEEETCEEEEEEECSS--CEE-EEEES-SSE-EEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEEcCC--EEE-EEEEe-CCC-cEEEECCEEEEeeCCcc
Confidence            3445566778999999999999988764  332 55543 222 35799999999999743

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.76  E-value=0.00017  Score=70.64  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~  227 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD  227 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence            4679999999999999999999999999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.74  E-value=0.00032  Score=69.23  Aligned_cols=49  Identities=16%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      .|+++++++.++++..++ + ++++|.+.+..+|+...+.+|.||+|+|.-
T Consensus       404 ~gV~v~~~~~v~~i~~~~-~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  452 (521)
T 1hyu_A          404 KNVDIILNAQTTEVKGDG-S-KVVGLEYRDRVSGDIHSVALAGIFVQIGLL  452 (521)
T ss_dssp             TTEEEECSEEEEEEEECS-S-SEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             CCcEEEeCCEEEEEEcCC-C-cEEEEEEEeCCCCceEEEEcCEEEECcCCC
Confidence            589999999999998765 4 888898876445666689999999999964

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.73  E-value=2.8e-05  Score=79.36  Aligned_cols=36  Identities=31%  Similarity=0.536  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ..+||||||||++|+++|+.|+++|++|+|||+.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~  407 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE  407 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            458999999999999999999999999999999863

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.72  E-value=0.00046  Score=63.75  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=40.6

Q ss_pred             HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ++.|+++++++++.++..++++-++.+|.+.+..+|+...+.+|.||+|+|...
T Consensus       206 ~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  259 (333)
T 1vdc_A          206 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEP  259 (333)
T ss_dssp             TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred             hCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCcc
Confidence            357899999999999987653114667787653356557899999999999754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.69  E-value=0.0008  Score=66.33  Aligned_cols=32  Identities=28%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.68  E-value=0.00028  Score=69.17  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=45.7

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      .+.+.++++|++++++++|+++..++ + ++ .|++   .+|+  .+.||.||+|+|...+ .+++.+|+.
T Consensus       231 ~~~~~l~~~GV~v~~~~~V~~i~~~~-~-~~-~v~l---~dG~--~i~aD~Vv~a~G~~pn~~l~~~~gl~  293 (493)
T 1m6i_A          231 WTMEKVRREGVKVMPNAIVQSVGVSS-G-KL-LIKL---KDGR--KVETDHIVAAVGLEPNVELAKTGGLE  293 (493)
T ss_dssp             HHHHHHHTTTCEEECSCCEEEEEEET-T-EE-EEEE---TTSC--EEEESEEEECCCEEECCTTHHHHTCC
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEecC-C-eE-EEEE---CCCC--EEECCEEEECCCCCccHHHHHHcCCc
Confidence            44556677899999999999998765 3 44 4554   3443  7999999999998654 467767665

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.66  E-value=0.0004  Score=63.49  Aligned_cols=51  Identities=14%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ++.|+++++++++.++..++ + ++.+|+++. .+|+...+.+|.||+|+|.-.
T Consensus       194 ~~~gv~~~~~~~v~~i~~~~-~-~~~~v~~~~-~~g~~~~~~~D~vv~a~G~~p  244 (315)
T 3r9u_A          194 KNEKIELITSASVDEVYGDK-M-GVAGVKVKL-KDGSIRDLNVPGIFTFVGLNV  244 (315)
T ss_dssp             HCTTEEEECSCEEEEEEEET-T-EEEEEEEEC-TTSCEEEECCSCEEECSCEEE
T ss_pred             hcCCeEEEeCcEEEEEEcCC-C-cEEEEEEEc-CCCCeEEeecCeEEEEEcCCC
Confidence            35789999999999998876 5 888898873 466666899999999999744

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.64  E-value=3.7e-05  Score=73.48  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      ..+||||||||++|+++|+.|++.|.  +|+|||+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   42 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   42 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCC
Confidence            45899999999999999999999998  499999975

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.63  E-value=0.00035  Score=70.12  Aligned_cols=61  Identities=18%  Similarity=0.079  Sum_probs=44.1

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      ..+.+.+++.|++++++++|+++..+++  .   |++   .+|+  .+.+|.||+|+|...+ .+++.+|+.
T Consensus       232 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~---v~~---~~g~--~i~~D~Vi~a~G~~p~~~~l~~~g~~  293 (588)
T 3ics_A          232 AYVHEHMKNHDVELVFEDGVDALEENGA--V---VRL---KSGS--VIQTDMLILAIGVQPESSLAKGAGLA  293 (588)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEGGGT--E---EEE---TTSC--EEECSEEEECSCEEECCHHHHHTTCC
T ss_pred             HHHHHHHHHcCCEEEECCeEEEEecCCC--E---EEE---CCCC--EEEcCEEEEccCCCCChHHHHhcCce
Confidence            3445566778999999999999977652  3   344   3443  7899999999998653 466666654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.62  E-value=0.00025  Score=66.64  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  176 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA  176 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            579999999999999999999999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.61  E-value=0.00056  Score=62.99  Aligned_cols=62  Identities=11%  Similarity=-0.046  Sum_probs=45.8

Q ss_pred             HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh-HHHhhhhCCC
Q 013476          242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQN  306 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s-~~l~~~~g~~  306 (442)
                      +++.|++++.++++.++..++   .+.+|++.+..+++...+.+|.||+|+|... ..+++.+++.
T Consensus       199 l~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~  261 (332)
T 3lzw_A          199 LHASKVNVLTPFVPAELIGED---KIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLD  261 (332)
T ss_dssp             HHHSSCEEETTEEEEEEECSS---SCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCC
T ss_pred             HhcCCeEEEeCceeeEEecCC---ceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCcc
Confidence            356799999999999998765   3456777764456667899999999999754 2455555443

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.60  E-value=3.7e-05  Score=74.51  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH-C------CCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAAT-R------GLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~-~------G~~V~liEk~~  104 (442)
                      ..+||+|||||++|+.+|..|++ .      |.+|+|||+.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~   43 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   43 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCC
Confidence            35799999999999999999999 7      99999999985

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.56  E-value=0.0015  Score=65.56  Aligned_cols=32  Identities=28%  Similarity=0.158  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999975

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.54  E-value=4.5e-05  Score=74.78  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      +..+||||||||++|+++|..|.++  |.+|+|||+.+
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~   46 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   46 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4458999999999999999999887  89999999985

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.54  E-value=5.8e-05  Score=80.60  Aligned_cols=65  Identities=17%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CC-------CceEEEEcCEEEEccCCC--hHHHhhh-hCCC
Q 013476          240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LS-------GKEFDTYAKVVVNAAGPF--CDSVRKL-ADQN  306 (442)
Q Consensus       240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~-------g~~~~i~a~~VVlAtG~~--s~~l~~~-~g~~  306 (442)
                      +.+++.|++|++++.+.++..++ + +|++|++...   .+       |+...+.||.||+|+|.-  ...|+.. .|+.
T Consensus       378 ~~~~~~Gv~~~~~~~~~~i~~~~-g-~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~  455 (1025)
T 1gte_A          378 ELAKEEKCEFLPFLSPRKVIVKG-G-RIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIK  455 (1025)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEET-T-EEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSC
T ss_pred             HHHHHcCCEEEeCCCceEEEccC-C-eEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCce
Confidence            45677899999999999998754 6 8888876421   12       223578999999999983  3456554 2443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.52  E-value=0.0005  Score=66.47  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-+|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  181 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE  181 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            3589999999999999999999999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.52  E-value=0.0011  Score=65.33  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..-.++|||||..|+-.|..+++.|.+|+|+++.
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~  255 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS  255 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc
Confidence            3467999999999999999999999999999874

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.50  E-value=8.1e-05  Score=72.19  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC--CeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRG--LRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~~  105 (442)
                      ..+||+|||+|++|+.+|..|++.|  ++|+|||+.+.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~   42 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   42 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            3489999999999999999999998  99999999863

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.48  E-value=0.00038  Score=64.41  Aligned_cols=50  Identities=22%  Similarity=0.209  Sum_probs=38.1

Q ss_pred             HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +.|++++++++++++..++   ++.+|.+.+..+|+...+.+|.||+|+|.-.
T Consensus       203 ~~gV~v~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  252 (335)
T 2a87_A          203 NDKIRFLTNHTVVAVDGDT---TVTGLRVRDTNTGAETTLPVTGVFVAIGHEP  252 (335)
T ss_dssp             CTTEEEECSEEEEEEECSS---SCCEEEEEEETTSCCEEECCSCEEECSCEEE
T ss_pred             cCCcEEEeCceeEEEecCC---cEeEEEEEEcCCCceEEeecCEEEEccCCcc
Confidence            5789999999999997654   4556777642345556899999999999754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.47  E-value=0.0013  Score=63.57  Aligned_cols=53  Identities=13%  Similarity=0.107  Sum_probs=39.4

Q ss_pred             cCceEecCeEEEEEEEcC-CCCeEEEEEEEECC------------CCceEEEEcCEEEEccCCChHH
Q 013476          245 AGAAVLNHAEVISLIKDE-ASNRIIGARIRNNL------------SGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       245 ~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~------------~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      +|++|++++.+++|..++ ++ +|.+|++....            +|+...+.||.||+|+|...+.
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~-~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~  335 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGR-RAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP  335 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSS-SEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC
T ss_pred             ceEEEECCCChheEEcCCCCc-eEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC
Confidence            899999999999998763 22 57777765311            3444689999999999987654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.42  E-value=0.00049  Score=67.46  Aligned_cols=61  Identities=15%  Similarity=0.049  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCc--eEEEEcCEEEEccCCChHHH
Q 013476          233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK--EFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~--~~~i~a~~VVlAtG~~s~~l  299 (442)
                      .+...+.+.++++||+++++++|+++..+  + .+..+..   .+|+  ..+|.||.||.|+|.-.+.+
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~~~--~-~~~~~~~---~dg~~~~~~i~ad~viwa~Gv~~~~~  335 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKVEEK--Q-LLAKTKH---EDGKITEETIPYGTLIWATGNKARPV  335 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEECSS--E-EEEEEEC---TTSCEEEEEEECSEEEECCCEECCHH
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEEeCC--c-eEEEEEe---cCcccceeeeccCEEEEccCCcCCHH
Confidence            44556677788899999999999988542  2 2222221   3343  34799999999999755433

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.38  E-value=0.00024  Score=68.70  Aligned_cols=33  Identities=30%  Similarity=0.474  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      -+|+|||+|..|+-+|..|.+.|. +|+++++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            479999999999999999999998 599998864

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.38  E-value=6.1e-05  Score=76.08  Aligned_cols=33  Identities=24%  Similarity=0.470  Sum_probs=31.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--------CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRG--------LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G--------~~V~liEk~~  104 (442)
                      .+|+|||||++||++|+.|++.|        ++|+|+|+.+
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            68999999999999999999998        9999999985

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.36  E-value=0.00017  Score=71.95  Aligned_cols=56  Identities=14%  Similarity=0.090  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCC-CCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~-g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      ..+.++|.+.++..|++|+++++|.+|..+++ | +++||+.   .+|+  .+.||.||....
T Consensus       378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g-~v~gV~~---~~Ge--~i~A~~VVs~~~  434 (650)
T 1vg0_A          378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESR-KCKAVID---QFGQ--RIISKHFIIEDS  434 (650)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTC-CEEEEEE---TTSC--EEECSEEEEEGG
T ss_pred             hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCC-eEEEEEe---CCCC--EEEcCEEEEChh
Confidence            68899999999999999999999999988764 6 8999874   3454  789999888444

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.34  E-value=0.00094  Score=64.26  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|..|+-.|..+++.|.+|+|+|+.+
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  180 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSD  180 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeec
Confidence            3579999999999999999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.32  E-value=0.0019  Score=68.97  Aligned_cols=33  Identities=36%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      -.|+|||||..|+-+|..|++.|. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            389999999999999999999997 899999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.25  E-value=0.0015  Score=63.06  Aligned_cols=61  Identities=15%  Similarity=-0.008  Sum_probs=43.5

Q ss_pred             HHHHHHHHHH------cCceEecCeEEEEEEEcCCCCeEEEEEEEEC-------------CCCceEEEEcCEEEEccCCC
Q 013476          235 NVGLALTAAL------AGAAVLNHAEVISLIKDEASNRIIGARIRNN-------------LSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       235 ~~~l~~~~~~------~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~-------------~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ...|.+.+++      +|++|++++.+.++..+  + +|.+|++...             .+|+...+.||.||.|+|..
T Consensus       249 ~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~-~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~  325 (456)
T 1lqt_A          249 IKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--R-KVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYR  325 (456)
T ss_dssp             HHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--S-SCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEE
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--C-cEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccc
Confidence            3455555655      79999999999999765  3 6666766520             13444579999999999986


Q ss_pred             hHH
Q 013476          296 CDS  298 (442)
Q Consensus       296 s~~  298 (442)
                      .+.
T Consensus       326 p~~  328 (456)
T 1lqt_A          326 GVP  328 (456)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            644

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.25  E-value=0.0017  Score=63.06  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  205 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD  205 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC
Confidence            3579999999999999999999999999999864

>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}

Probab=97.23  E-value=0.00011  Score=42.18  Aligned_cols=18  Identities=39%  Similarity=0.350  Sum_probs=13.8

Q ss_pred             CcchhhhhhhHHHHhhhc
Q 013476            1 MSATRIRRFGAVLAAAAG   18 (442)
Q Consensus         1 ~srR~f~~~~~~~~~~aa   18 (442)
                      ||||+|||+.++++++++
T Consensus         3 lsRR~FLK~~aaa~Aaaa   20 (35)
T 2pq4_B            3 LSRRSFMKANAVAAAAAA   20 (35)
T ss_dssp             CCSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            689999998876665544

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.21  E-value=0.00018  Score=70.50  Aligned_cols=35  Identities=14%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+..|||||||.+|+++|..|++.+++|+|||+++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            34689999999999999999999999999999974

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.20  E-value=0.0047  Score=56.24  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            579999999999999999999999999999753

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.04  E-value=0.00041  Score=65.99  Aligned_cols=57  Identities=11%  Similarity=-0.037  Sum_probs=42.3

Q ss_pred             HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      +++.|++++.++++..+..++++ ..  |+.   .+|+  .+.+|.||+|+|--.+.+++..|+.
T Consensus       212 l~~~gi~v~~~~~v~~v~~~~~~-~~--v~~---~~g~--~i~~D~vi~~~g~~~~~~~~~~gl~  268 (401)
T 3vrd_B          212 TENALIEWHPGPDAAVVKTDTEA-MT--VET---SFGE--TFKAAVINLIPPQRAGKIAQSASLT  268 (401)
T ss_dssp             STTCSEEEECTTTTCEEEEETTT-TE--EEE---TTSC--EEECSEEEECCCEEECHHHHHTTCC
T ss_pred             HHhcCcEEEeCceEEEEEecccc-eE--EEc---CCCc--EEEeeEEEEecCcCCchhHhhcccc
Confidence            45679999999999998877644 21  333   3443  7999999999998777777776653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.02  E-value=0.0023  Score=67.91  Aligned_cols=60  Identities=17%  Similarity=0.121  Sum_probs=42.4

Q ss_pred             HHcCceEecCeEEEEEEEcCCCCeEEEEEEEE--CC--CCceEEEEcCEEEEccCCChH-HHhhhh
Q 013476          243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRN--NL--SGKEFDTYAKVVVNAAGPFCD-SVRKLA  303 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~--~~--~g~~~~i~a~~VVlAtG~~s~-~l~~~~  303 (442)
                      ++.|++|++++.++++..++++ ++.+|++.+  ..  +|+...+.+|.||+|+|.-.+ .++...
T Consensus       327 ~~~GV~v~~~~~v~~i~~~~~~-~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~  391 (965)
T 2gag_A          327 VADGVQVISGSVVVDTEADENG-ELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR  391 (965)
T ss_dssp             HHTTCCEEETEEEEEEEECTTS-CEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT
T ss_pred             HhCCeEEEeCCEeEEEeccCCC-CEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC
Confidence            4579999999999999875224 788888863  10  133468999999999997432 344443

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.97  E-value=0.0042  Score=58.04  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC
Confidence            479999999999999999999999999999863

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.81  E-value=0.002  Score=63.76  Aligned_cols=33  Identities=30%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.+.+|+|+++.+
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~  218 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTP  218 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCC
Confidence            579999999999999999999999999999985

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.58  E-value=0.0031  Score=49.97  Aligned_cols=37  Identities=14%  Similarity=0.142  Sum_probs=33.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...+-.|+|||.|-.|...|..|.+.|++|+++|+.+
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3445689999999999999999999999999999963

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.34  E-value=0.012  Score=60.52  Aligned_cols=33  Identities=18%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             CcEEEEC--CChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIG--GGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVG--aG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||  +|..|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4799999  99999999999999999999999853

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.11  E-value=0.0076  Score=48.64  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|..|...|..|.+.|.+|+++|+..
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.97  E-value=0.0085  Score=47.41  Aligned_cols=32  Identities=28%  Similarity=0.526  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|+|+|..|...|..|.++|++|+++|+.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            47999999999999999999999999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.95  E-value=0.0088  Score=47.03  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|..|...|..|.+.|++|+++|+.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            46999999999999999999999999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.94  E-value=0.011  Score=47.62  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .-.|+|+|+|..|...|..|.+.|++|+++|+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            457999999999999999999999999999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.83  E-value=0.0092  Score=45.31  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-CeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRG-LRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~  103 (442)
                      ..|+|+|+|..|..++..|.+.| ++|+++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            46999999999999999999999 899999985

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.61  E-value=0.009  Score=56.27  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~  179 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILE  179 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            579999999999999999999999999999975

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.56  E-value=0.0088  Score=54.43  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            479999999999999999999999999999874

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.50  E-value=0.062  Score=54.61  Aligned_cols=51  Identities=14%  Similarity=-0.029  Sum_probs=37.5

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .+.+.+++.|++++.+++++++..  +  .   +++..  +|+...+.+|.||+|+|.-.
T Consensus       578 ~~~~~l~~~GV~v~~~~~v~~i~~--~--~---v~~~~--~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          578 IHRTTLLSRGVKMIPGVSYQKIDD--D--G---LHVVI--NGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEET--T--E---EEEEE--TTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHhcCCEEEeCcEEEEEeC--C--e---EEEec--CCeEEEEeCCEEEECCCccc
Confidence            445667789999999999999862  2  3   23322  45456899999999999754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.39  E-value=0.015  Score=52.86  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|.|||+|..|...|..++..|++|+|+|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            569999999999999999999999999999863

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.29  E-value=0.058  Score=53.86  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ++|||+|||+|+.|+..|..|++.|++|++|||+..
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~   42 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSY   42 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCc
Confidence            469999999999999999999999999999999973

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.20  E-value=0.023  Score=51.53  Aligned_cols=32  Identities=44%  Similarity=0.641  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++|+++|+.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            35999999999999999999999999999986

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.16  E-value=0.02  Score=45.18  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|+|+|..|...|..|.+.|++|+++|+.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999986

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.07  E-value=0.026  Score=46.79  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC-CCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATR-GLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|...|..|.+. |++|+++|+..
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            45799999999999999999999 99999999863

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.89  E-value=0.024  Score=53.87  Aligned_cols=34  Identities=26%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|.|||.|.+||.+|..||+.|++|+.+|-.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4478999999999999999999999999999876

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=94.88  E-value=0.074  Score=48.03  Aligned_cols=33  Identities=3%  Similarity=-0.018  Sum_probs=25.7

Q ss_pred             CCcEEEECCCh-HHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGA-TGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~-aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...++|||+|. +++.+|..+.+.|.+|+|+++.
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~  179 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYNWSTDLVIATNG  179 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSS
T ss_pred             CCceeeecCCCchhhhHHHHHHhCCceEEEEecc
Confidence            45688888775 5678888888889999998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.78  E-value=0.034  Score=49.86  Aligned_cols=32  Identities=25%  Similarity=0.465  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++|+++|+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46999999999999999999999999999986

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.64  E-value=0.033  Score=50.89  Aligned_cols=32  Identities=44%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|..|...|..|++.|.+|+++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46999999999999999999999999999885

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.51  E-value=0.021  Score=54.52  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..|++.|++|+++|+..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            469999999999999999999999999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.50  E-value=0.03  Score=47.90  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .-.|+|||||-+|...|..|.+.|++|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            467999999999999999999999999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.48  E-value=0.033  Score=50.68  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|.+.|..|++.|.+|+++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            46999999999999999999999999999885

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.41  E-value=0.022  Score=50.36  Aligned_cols=33  Identities=30%  Similarity=0.483  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .-.|+|||+|-.|...|..|.+.|++|+|++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            357999999999999999999999999999975

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.37  E-value=0.044  Score=50.43  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|.+.|..|++.|.+|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999874

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.32  E-value=0.038  Score=47.32  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|||+|..|...|..|.++|++|+++|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48999999999999999999999999999863

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.25  E-value=0.047  Score=52.19  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....+.|||.|..|+..|..|++.|++|+++++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~   41 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDA   41 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999999874

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.25  E-value=0.043  Score=53.06  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|.|||+|..|+..|..|++.|++|+++|+.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            467999999999999999999999999999985

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.23  E-value=0.047  Score=50.08  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ...|+|||+|..|.+.|..|++.|+ +|+|+|...
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            3579999999999999999999998 999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.13  E-value=0.051  Score=50.38  Aligned_cols=34  Identities=32%  Similarity=0.421  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|.|||+|..|.+.|..|+++|++|+++++.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3457999999999999999999999999999985

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.00  E-value=0.061  Score=45.69  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|.+|+++++..
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            569999999999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.96  E-value=0.057  Score=49.24  Aligned_cols=32  Identities=38%  Similarity=0.597  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ..|+|||+|..|...|..|++.|.  +|+++|+.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            479999999999999999999999  99999986

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.91  E-value=0.056  Score=51.81  Aligned_cols=33  Identities=33%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|+..|..|++.|++|+++|+..
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            369999999999999999999999999999863

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.89  E-value=0.067  Score=50.04  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|.+|+.+|..|...|++|+++|+..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.86  E-value=0.06  Score=51.84  Aligned_cols=33  Identities=27%  Similarity=0.210  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHC-CC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATR-GL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~-G~-~V~liEk~~  104 (442)
                      ..|.|||+|..|+..|..|++. |+ +|+++|+..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~   53 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNS   53 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4799999999999999999999 99 999999874

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.77  E-value=0.065  Score=48.00  Aligned_cols=32  Identities=28%  Similarity=0.177  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..|++.|++|+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            48999999999999999999999999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.76  E-value=0.065  Score=49.27  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .++..|.|||+|..|...|..|++.|++|+++++.
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            45688999999999999999999999999999885

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.74  E-value=0.045  Score=49.35  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|..|.+.|..|++.|.+|+++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEec
Confidence            46999999999999999999999999999986

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.63  E-value=0.074  Score=51.13  Aligned_cols=33  Identities=24%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|.|||.|.+|+++|..|+++|++|++.|+..
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            579999999999999999999999999999853

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.61  E-value=0.072  Score=51.36  Aligned_cols=33  Identities=33%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..|++.|++|+++|+..
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.57  E-value=0.07  Score=48.41  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++|+++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            36999999999999999999999999999885

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.56  E-value=0.062  Score=47.05  Aligned_cols=34  Identities=24%  Similarity=0.529  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ..|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            689999999999999999999997 7999999754

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.53  E-value=0.07  Score=47.83  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..-.|.|||+|..|...|..|+ .|++|+++|+.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            3467999999999999999999 999999999863

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.51  E-value=0.086  Score=48.23  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..|+|||+|..|.+.|..|++.|+ +|+|+|...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999863

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.40  E-value=0.064  Score=51.80  Aligned_cols=33  Identities=9%  Similarity=0.129  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+++..
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            579999999999999999999999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=93.39  E-value=0.072  Score=51.50  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  209 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNT  209 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC
Confidence            4589999999999999999999999999999975

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.35  E-value=0.074  Score=49.32  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|.+|+.+|..|...|++|+++|+..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3679999999999999999999999999999863

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.33  E-value=0.096  Score=47.52  Aligned_cols=34  Identities=18%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|.|||.|..|...|..|++.|++|+++++..
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3579999999999999999999999999999863

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.33  E-value=0.078  Score=49.08  Aligned_cols=35  Identities=26%  Similarity=0.517  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      .+..|||+|||.+|+.+|..|...|. +|+++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            34789999999999999999999999 899999974

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.30  E-value=0.076  Score=50.32  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....|.|||+|..|+..|..|++ |++|+++|+..
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            33579999999999999999998 99999999863

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.30  E-value=0.1  Score=47.26  Aligned_cols=34  Identities=35%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ....|.|||+|..|.+.|+.|++.|+ +|+|+|..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34579999999999999999999999 99999986

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.29  E-value=0.066  Score=51.31  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||.|.+|+++|..|+++|++|++.|...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            469999999999999999999999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.19  E-value=0.09  Score=47.55  Aligned_cols=31  Identities=32%  Similarity=0.522  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|+|||+|..|.+.|+.|+..|+  +|+|+|..
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            48999999999999999999999  99999876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=93.17  E-value=0.091  Score=48.72  Aligned_cols=32  Identities=25%  Similarity=0.205  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++|+++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47999999999999999999999999999885

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.15  E-value=0.11  Score=45.39  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|.|||+|..|.+.|..|++.|++|+++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~   51 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRD   51 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467999999999999999999999999999986

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.15  E-value=0.09  Score=47.65  Aligned_cols=31  Identities=35%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|..|...|..|+ .|.+|+++++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~   33 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRR   33 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECC
Confidence            46999999999999999999 99999999885

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.13  E-value=0.076  Score=50.79  Aligned_cols=31  Identities=29%  Similarity=0.217  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|+..|..|++.|++|+++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999999999999999999985

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=93.09  E-value=0.099  Score=47.25  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|.|||.|..|...|..|++.|++|+++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            357999999999999999999999999999886

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=93.09  E-value=0.091  Score=49.86  Aligned_cols=34  Identities=32%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+++|+.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~  185 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALP  185 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4679999999999999999999999999999975

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.09  E-value=0.094  Score=47.75  Aligned_cols=33  Identities=30%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|+ +|+|+|...
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            469999999999999999999998 999999863

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.06  E-value=0.1  Score=49.30  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +-.|+|||.|-.|...|..|.+.|.+|++||+..
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999873

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=93.05  E-value=0.068  Score=52.69  Aligned_cols=34  Identities=26%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  211 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP  211 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            3579999999999999999999999999999985

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.99  E-value=0.099  Score=47.63  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|.+.|..|++.|.+|+++ +.
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            56999999999999999999999999999 64

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.98  E-value=0.1  Score=46.29  Aligned_cols=33  Identities=33%  Similarity=0.471  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|+|+|.+|.++|..|++.|.+|+|+++.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            356999999999999999999999999999875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=92.96  E-value=0.075  Score=51.73  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  231 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD  231 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            4579999999999999999999999999999875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.91  E-value=0.099  Score=48.33  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      -.+..|||+|+|.+|..+|..|...|. +|+++|+..
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            356789999999999999999999998 799999973

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=92.91  E-value=0.11  Score=50.22  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..|++.|++|+++|+..
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=92.84  E-value=0.073  Score=51.13  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLR-VGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~  104 (442)
                      .-+|+|||+|..|+-.|..|++.|.+ |+|+++..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            35799999999999999999999999 99999864

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=92.84  E-value=0.05  Score=52.02  Aligned_cols=35  Identities=17%  Similarity=0.141  Sum_probs=25.4

Q ss_pred             CCCCcEEEECCChHHH-HHHHHHHHC-CCe-EEEEecc
Q 013476           69 SNPLDILVIGGGATGC-GVALDAATR-GLR-VGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl-~aA~~La~~-G~~-V~liEk~  103 (442)
                      ++...|.|||+|..|. ..+..|.+. +.+ |.|+++.
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~  118 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN  118 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCC
Confidence            4457899999999996 666666664 566 4577765

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=92.84  E-value=0.097  Score=50.73  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD  220 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            3579999999999999999999999999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.77  E-value=0.043  Score=43.43  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|||+|..|...|..|++.|.+|+++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            367999999999999999999999999999885

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.76  E-value=0.11  Score=48.18  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|+|+|.+|..++..|...|++|+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            57999999999999999999999999999885

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.72  E-value=0.08  Score=52.29  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            579999999999999999999999999999975

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.67  E-value=0.11  Score=48.98  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|.+|+.+|..|...|++|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.67  E-value=0.15  Score=46.55  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..|+|||+|..|...|..|+..|+ +|+|+|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            469999999999999999999998 999999763

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.62  E-value=0.1  Score=49.47  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....|||.|..|+..|..|++.|++|+++|+..
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            568999999999999999999999999999873

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.59  E-value=0.12  Score=46.27  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||.|..|...|..|++.|++|+++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            58999999999999999999999999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.54  E-value=0.15  Score=46.42  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      +....|.|||+|..|.+.|+.|+..|+ +|+|+|...
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            334679999999999999999999999 999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.48  E-value=0.15  Score=43.36  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++|+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999885

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.45  E-value=0.12  Score=50.22  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+|+++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            3479999999999999999999999999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.40  E-value=0.17  Score=45.78  Aligned_cols=33  Identities=36%  Similarity=0.452  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|.|||.|..|...|..|++.|++|+++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~   41 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRS   41 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457999999999999999999999999999886

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.38  E-value=0.1  Score=46.98  Aligned_cols=33  Identities=21%  Similarity=0.130  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||.|..|...|..|++.|++|+++++..
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999874

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.38  E-value=0.086  Score=49.11  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|++.|++|+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            6999999999999999999999999999885

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.33  E-value=0.15  Score=49.45  Aligned_cols=36  Identities=28%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+...|.|||.|..|...|..|+++|++|+++++..
T Consensus         8 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            8 HMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456889999999999999999999999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.32  E-value=0.14  Score=47.75  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|+|+|..|..+|..|...|++|+++++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~  198 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVN  198 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            56999999999999999999999999999985

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.24  E-value=0.15  Score=46.25  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      .|+|||+|..|.+.|..|++.  |.+|+++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            489999999999999999995  78999999864

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=92.24  E-value=0.11  Score=50.54  Aligned_cols=34  Identities=32%  Similarity=0.342  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATR---GLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~---G~~V~liEk~~  104 (442)
                      .-.++|||+|..|+-.|..|++.   |.+|+|+|+.+
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~  223 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD  223 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCC
Confidence            35899999999999999999999   99999999975

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.22  E-value=0.11  Score=47.59  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVER  102 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk  102 (442)
                      .|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            489999999999999999999999999998

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.17  E-value=0.15  Score=46.67  Aligned_cols=33  Identities=30%  Similarity=0.293  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHH-HHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCG-VALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~-aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||.|.+|++ +|..|.++|++|.+.|+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            46999999999996 8899999999999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.16  E-value=0.15  Score=47.84  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4679999999999999999999999999999863

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.14  E-value=0.17  Score=44.65  Aligned_cols=34  Identities=24%  Similarity=0.508  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...++|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4679999999999999999999999999998863

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.13  E-value=0.13  Score=46.19  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++|.++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46999999999999999999999999999885

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=92.11  E-value=0.13  Score=50.39  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~  247 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE  247 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            689999999999999999999999999999975

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.11  E-value=0.15  Score=46.41  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||.|..|...|..|++.|++|+++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   63 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRT   63 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCC
Confidence            47999999999999999999999999999986

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.06  E-value=0.17  Score=45.76  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..|+|||+|..|...|+.|+..|. +|+|+|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            469999999999999999999997 999999753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.91  E-value=0.13  Score=45.87  Aligned_cols=36  Identities=17%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ....|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            35789999999999999999999997 7999998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.84  E-value=0.078  Score=51.02  Aligned_cols=32  Identities=19%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|+|+|-.|...|..|.++|++|+|||+.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            59999999999999999999999999999873

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=91.83  E-value=0.12  Score=46.25  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||.|..|...|..|++.|++|+++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            59999999999999999999999999999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.82  E-value=0.12  Score=48.90  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|+..|..|++ |++|+++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECC
Confidence            48999999999999999999 9999999985

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=91.81  E-value=0.17  Score=42.80  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=28.8

Q ss_pred             cEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|+||| +|..|...|..|++.|++|+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            489999 9999999999999999999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.81  E-value=0.17  Score=46.03  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRG-LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~  104 (442)
                      ..|.|||.|..|...|..|++.| ++|+++++..
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999 9999999863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.80  E-value=0.22  Score=45.32  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ....|.|||+|..|.+.|+.|+..|. +|.|+|...
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            34679999999999999999999988 999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=91.79  E-value=0.18  Score=46.66  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||.|..|...|..|++.|++|+++++.
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~   54 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLN   54 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            57999999999999999999999999999986

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=91.79  E-value=0.14  Score=49.41  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +.+.+|.|||.|..|...|..|+++|++|+++++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            44578999999999999999999999999999886

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.76  E-value=0.27  Score=44.78  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            4789999999999999999999997 6999998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.74  E-value=0.21  Score=45.36  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..|++.|++|+++++..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            569999999999999999999999999998863

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.73  E-value=0.13  Score=45.58  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|+|+|.+|.++|..|++.|.+|+|+.+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            356999999999999999999999999999885

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.71  E-value=0.18  Score=43.41  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|.|| |..|..++.+|+++|++|+++.+..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            356999997 9999999999999999999998863

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.69  E-value=0.15  Score=46.51  Aligned_cols=31  Identities=23%  Similarity=0.465  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|++.|+  +|+++|+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            48999999999999999999999  99999986

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=91.66  E-value=0.099  Score=44.77  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEE-Eecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGL-VERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~l-iEk~  103 (442)
                      ..|.|||+|..|.+.|..|++.|++|++ +++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            5799999999999999999999999998 7764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=91.64  E-value=0.11  Score=47.16  Aligned_cols=31  Identities=35%  Similarity=0.454  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHC-----C-CeEEEEec
Q 013476           72 LDILVIGGGATGCGVALDAATR-----G-LRVGLVER  102 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~-----G-~~V~liEk  102 (442)
                      -.|.|||+|..|...|..|++.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3699999999999999999999     9 99999987

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.62  E-value=0.19  Score=47.00  Aligned_cols=33  Identities=33%  Similarity=0.535  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|||+|.+|..+|..|...|++|+++++.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            357999999999999999999999999999985

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=91.61  E-value=0.18  Score=48.29  Aligned_cols=32  Identities=31%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      --|+|+|+|..|..+|..|+..|++|+++|+.
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46899999999999999999999999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.60  E-value=0.22  Score=45.33  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      ...|+|||+|..|.++|+.|+..|.  +|+|+|...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999988  899999863

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.55  E-value=0.19  Score=45.40  Aligned_cols=34  Identities=24%  Similarity=0.141  Sum_probs=30.4

Q ss_pred             CCCcEEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|+|||+| ++|..+|..|.+.|++|+++++.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            45689999999 67999999999999999999775

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.48  E-value=0.2  Score=48.26  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..+|.|||.|..|...|..|++.|++|+++++..
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=91.47  E-value=0.18  Score=48.95  Aligned_cols=33  Identities=24%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.++|||+|..|+-.|..|++.|.+|+|+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            579999999999999999999999999999853

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.44  E-value=0.17  Score=49.06  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~  103 (442)
                      ..|.|||.|..|+..|..|++.  |++|+++|+.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4799999999999999999998  7999999975

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.39  E-value=0.22  Score=43.60  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            4789999999999999999999998 6999998754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.38  E-value=0.19  Score=45.28  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...|+|||+|.+|.++|..|++.|. +|+|+.+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4579999999999999999999998 89999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.32  E-value=0.25  Score=44.78  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ...|.|||.|..|.+.|..|++.|+  +|+++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            3579999999999999999999999  99999886

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.27  E-value=0.19  Score=48.94  Aligned_cols=59  Identities=12%  Similarity=0.045  Sum_probs=45.7

Q ss_pred             HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476          240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN  306 (442)
Q Consensus       240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~  306 (442)
                      +.++++|++|++++.++++..++   ++.+|+.   .+|  ..+.||.||+|+|...+ .|++.+|+.
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~---~v~~v~~---~~g--~~i~aD~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNE---KVERVID---MNN--HEYKVDALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSS---SCCEEEE---TTC--CEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHhCCcEEEeCCeeEEEecCC---ceEEEEe---CCC--eEEEeCEEEECCCcCcCchHHHhcCCC
Confidence            66778999999999999997653   4555554   344  47999999999998765 488887765

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.26  E-value=0.21  Score=50.95  Aligned_cols=33  Identities=30%  Similarity=0.456  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..|++.|++|+++|+..
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            359999999999999999999999999999863

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.25  E-value=0.19  Score=48.27  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|||+|-.|...+..|.+.|++|+|+++.
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            56999999999999999999999999999975

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.18  E-value=0.18  Score=45.75  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRG--LRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~  103 (442)
                      .|+|||+|..|.+.|..|++.|  .+|+++|+.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            5999999999999999999999  689999985

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.16  E-value=0.22  Score=45.36  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ...|+|||+|..|.++|+.|++.|.  +|+|+|..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            3579999999999999999999987  89999975

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.06  E-value=0.23  Score=44.12  Aligned_cols=31  Identities=35%  Similarity=0.368  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|++.|++|+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999999999999999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.00  E-value=0.2  Score=44.64  Aligned_cols=33  Identities=24%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|.|+|..|...+..|.++|++|+++.+..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            469999999999999999999999999998863

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.96  E-value=0.25  Score=44.64  Aligned_cols=33  Identities=18%  Similarity=0.484  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            4579999999999999999999998 79999885

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.93  E-value=0.24  Score=45.83  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|+|+|.|..|..+|..|.+.|.+|++.|..
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3467999999999999999999999999998864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=90.90  E-value=0.27  Score=44.26  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=30.2

Q ss_pred             CcEEEEC-CChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIG-GGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.||| +|..|.+.|..|++.|++|+++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4699999 99999999999999999999998753

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=90.88  E-value=0.19  Score=45.20  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|-+||-|..|...|..|+++|++|+++++..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999874

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=90.80  E-value=0.2  Score=45.51  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ..|.|||.|..|...|..|++.|+ +|+++++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            579999999999999999999999 99999985

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.78  E-value=0.32  Score=43.29  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|.|+|..|...+..|.++|++|+++.+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            469999999999999999999999999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=90.77  E-value=0.23  Score=48.19  Aligned_cols=34  Identities=32%  Similarity=0.539  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.|+|||+|..|+-.|..|++.|.+|+++++.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            4589999999999999999999999999999975

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.73  E-value=0.23  Score=44.79  Aligned_cols=33  Identities=30%  Similarity=0.616  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      ..|.|||+|.+|...|+.|+..|.  .|+|+|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            579999999999999999999998  899999864

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=90.71  E-value=0.3  Score=43.47  Aligned_cols=35  Identities=11%  Similarity=0.015  Sum_probs=30.8

Q ss_pred             CCCCcEEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -....|+|||+| ++|..+|..|.+.|++|+++.+.
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            345789999999 68999999999999999999754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=90.69  E-value=0.28  Score=42.92  Aligned_cols=31  Identities=23%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      .++|||+|.+|.++++.|++.|. +|+|++|.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            79999999999999999999998 89999886

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.69  E-value=0.27  Score=45.62  Aligned_cols=32  Identities=28%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|||||..|..+|+.+.+.|++|+++|..+
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            48999999999999999999999999999874

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=90.63  E-value=0.22  Score=43.75  Aligned_cols=31  Identities=26%  Similarity=0.524  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCC-CeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRG-LRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~  103 (442)
                      .|.|||+|..|...|..|++.| .+|.++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            4899999999999999999999 999999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=90.62  E-value=0.22  Score=44.60  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|+|||+|..|.+.|+.|++.|.  +|+|+|..
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~   34 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            48999999999999999999998  89999986

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=90.59  E-value=0.24  Score=47.66  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...++|||+|..|+-.|..|++.|.+|+++++.+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~  203 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK  203 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            4689999999999999999999999999999975

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=90.56  E-value=0.27  Score=47.47  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..+|.|||+|..|...|..|++.|++|+++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            357999999999999999999999999999985

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.54  E-value=0.28  Score=43.66  Aligned_cols=34  Identities=21%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ....++|+|+|-+|.++++.|++.|. +|+|+.|.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            34679999999999999999999998 69999875

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=90.52  E-value=0.26  Score=47.73  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+|.|||+|..|...|..|++.|++|+++++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999863

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=90.45  E-value=0.33  Score=44.53  Aligned_cols=33  Identities=18%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|.|||.|..|.+.|..|.+.|++|+++++..
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999863

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=90.43  E-value=0.25  Score=50.34  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|...|..|++.|++|+++|+..
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999863

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.37  E-value=0.11  Score=44.75  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||.|..|.+.|..|.++|++|+++++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            46999999999999999999999999999873

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.37  E-value=0.26  Score=47.61  Aligned_cols=31  Identities=35%  Similarity=0.677  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6999999999999999999999999999985

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.36  E-value=0.29  Score=43.49  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|++.|+  +|+++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            48999999999999999999998  89999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=90.36  E-value=0.17  Score=47.19  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-------CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRG-------LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G-------~~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|       .+|+++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~   61 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDE   61 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECCh
Confidence            36999999999999999999999       9999999864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=90.36  E-value=0.2  Score=44.86  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...++|+|+|.+|.++|..|++.| +|+|+.+.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            356999999999999999999999 99999774

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.33  E-value=0.35  Score=43.03  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC---eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL---RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~---~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|+   +|+++++..
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            569999999999999999999998   899999864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.30  E-value=0.34  Score=40.97  Aligned_cols=30  Identities=33%  Similarity=0.535  Sum_probs=28.3

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |+|+|| |..|...+..|+++|++|+++.+.
T Consensus         3 vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRN   33 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEEcC
Confidence            899995 999999999999999999999886

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=90.29  E-value=0.22  Score=44.22  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ...++|||+|.+|.++|+.|++.|. +|+|+.|..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899998863

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.28  E-value=0.23  Score=50.53  Aligned_cols=33  Identities=33%  Similarity=0.473  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|.|||+|..|...|+.++..|++|+|+|..+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            479999999999999999999999999999863

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=90.25  E-value=0.27  Score=44.05  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||+|..|...|..|++.|++|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999999999999999998863

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=90.25  E-value=0.24  Score=47.74  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~  103 (442)
                      ..|.|||.|..|+..|..|++.  |++|+++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4699999999999999999999  8999999986

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.22  E-value=0.25  Score=43.84  Aligned_cols=32  Identities=31%  Similarity=0.428  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|.+|.+.|..|.+.|.+|+++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            46999999999999999999999999999885

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=90.17  E-value=0.26  Score=44.86  Aligned_cols=32  Identities=31%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ..|.|||+|..|.++|+.|+..|.  .|+|+|..
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            579999999999999999999998  89999975

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=90.14  E-value=0.27  Score=43.19  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC----CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRG----LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G----~~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|    .+|.++++..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence            46999999999999999999999    6899999874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=90.09  E-value=0.31  Score=43.52  Aligned_cols=32  Identities=13%  Similarity=0.307  Sum_probs=29.9

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+ |..|...|..|++.|++|+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            36999999 999999999999999999999875

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=90.08  E-value=0.3  Score=43.36  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...++|+|+|-+|.++++.|++.|. +|+|+.|.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4579999999999999999999998 89999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.05  E-value=0.18  Score=47.59  Aligned_cols=29  Identities=28%  Similarity=0.416  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHH-CCCeEEEEe
Q 013476           73 DILVIGGGATGCGVALDAAT-RGLRVGLVE  101 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~-~G~~V~liE  101 (442)
                      .|.|||+|..|.+.|..|++ .|++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            59999999999999999998 599999998

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.03  E-value=0.19  Score=44.85  Aligned_cols=33  Identities=18%  Similarity=0.048  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|..|+-+|..|++.| +|+++++..
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            468999999999999999999999 999998753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.03  E-value=0.35  Score=41.06  Aligned_cols=30  Identities=37%  Similarity=0.586  Sum_probs=28.4

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |+|.|| |..|...+..|+++|++|+++.+.
T Consensus         3 ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            899997 999999999999999999999885

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=90.02  E-value=0.16  Score=46.91  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-------CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRG-------LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G-------~~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|       ++|+++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~   48 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE   48 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcCh
Confidence            36999999999999999999999       8999999864

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=90.01  E-value=0.3  Score=45.02  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            4789999999999999999999998 6999998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=89.98  E-value=0.34  Score=43.42  Aligned_cols=34  Identities=32%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|.|||+|..|..+|..|...|.+|+++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3457999999999999999999999999999985

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=89.96  E-value=0.35  Score=42.80  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=29.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4579999999999999999999996 89999774

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.95  E-value=0.34  Score=43.58  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|.|||+|.+|..+|..|...|.+|+++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            456999999999999999999999999999985

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=89.93  E-value=0.36  Score=42.65  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             CCCCcEEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -...+|+|||+| +.|..+|..|.+.|++|+++.+.
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  192 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF  192 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            455789999999 68999999999999999999754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=89.81  E-value=0.32  Score=43.73  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++|+++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   36 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLM   36 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999999999885

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=89.80  E-value=0.31  Score=42.72  Aligned_cols=35  Identities=9%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -....++|||+| ++|..+|..|.+.|++|+++.+.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            445789999976 79999999999999999999763

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=89.80  E-value=0.44  Score=45.94  Aligned_cols=56  Identities=11%  Similarity=-0.095  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHc--------CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          232 SRLNVGLALTAALA--------GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       232 ~~l~~~l~~~~~~~--------Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ..+...|.+.+.+.        |++|+++++|++|..+++  +++ |++   .+|+  .+.||.||+|++..
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~--~v~-v~~---~~g~--~~~ad~vI~a~~~~  269 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPG--GVT-VKT---EDNS--VYSADYVMVSASLG  269 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSS--CEE-EEE---TTSC--EEEESEEEECSCHH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCC--cEE-EEE---CCCC--EEEcCEEEEecCHH
Confidence            35677777766554        789999999999998875  443 443   3443  78999999999964

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=89.78  E-value=0.4  Score=43.72  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ....|.|||+|.+|.+.|+.|+..|.  .|+|+|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            34679999999999999999999998  89999975

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=89.69  E-value=0.37  Score=43.06  Aligned_cols=33  Identities=27%  Similarity=0.271  Sum_probs=29.9

Q ss_pred             CCcEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...++|+| +|.+|.++|..|+++|.+|+++.+.
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            35699999 8999999999999999999999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=89.69  E-value=0.34  Score=44.02  Aligned_cols=35  Identities=17%  Similarity=0.416  Sum_probs=30.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ++...|+|||+|..|.+.|+.|+..|.  .|.|+|..
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            344689999999999999999999885  79999864

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=89.68  E-value=0.31  Score=44.12  Aligned_cols=32  Identities=34%  Similarity=0.496  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      .|.|||+|..|.+.|+.|+..|.  .|+|+|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            48999999999999999999887  899999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=89.66  E-value=0.35  Score=42.99  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ....++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            34579999999999999999999996 89999875

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=89.63  E-value=0.35  Score=43.96  Aligned_cols=35  Identities=23%  Similarity=0.538  Sum_probs=30.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .....|+|||+|..|.++|+.|+..|.  ++.|+|..
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            344679999999999999999999987  89999974

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=89.60  E-value=0.38  Score=47.30  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|..|+.+|..|++.|. +++|+|...+
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~V  361 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  361 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            4789999999999999999999998 6999998764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=89.57  E-value=0.37  Score=44.18  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=29.4

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           71 PLDILVIGG-GATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGa-G~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ...|+|||+ |..|.++|+.++..|.  +|+|+|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            357999997 9999999999999995  79999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=89.52  E-value=0.4  Score=43.28  Aligned_cols=33  Identities=21%  Similarity=0.517  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4579999999999999999999998 79999885

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=89.46  E-value=0.37  Score=43.88  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC----CeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRG----LRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G----~~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|    .+|+++++..
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            46999999999999999999999    7999998753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=89.34  E-value=0.38  Score=42.31  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|+|||+|.+|.+.|..|.+.|.+|+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            7999999999999999999999999999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=89.31  E-value=0.45  Score=41.35  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC----eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL----RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~----~V~liEk~  103 (442)
                      ..|.|||+|..|.+.|..|++.|+    +|.++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            469999999999999999999998    99999885

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=89.31  E-value=0.25  Score=45.27  Aligned_cols=32  Identities=19%  Similarity=0.526  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|..|+-+|..|++.| +|+++.+..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            57999999999999999999998 799998863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=89.30  E-value=0.15  Score=44.01  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|+|+|-.|...|..|.+.|+ |+++|+.+
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            579999999999999999999999 99999874

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=89.26  E-value=0.49  Score=46.45  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~V  362 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  362 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4789999999999999999999998 6999998754

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=89.25  E-value=0.32  Score=42.74  Aligned_cols=30  Identities=23%  Similarity=0.201  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVER  102 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk  102 (442)
                      .|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            489999999999999999999999999765

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.25  E-value=0.3  Score=43.58  Aligned_cols=30  Identities=27%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|...|..|++ |++|+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~   32 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRT   32 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence            59999999999999999999 9999999875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=89.14  E-value=0.57  Score=39.75  Aligned_cols=31  Identities=16%  Similarity=0.289  Sum_probs=28.3

Q ss_pred             cEEEEC-CChHHHHHHHHHH-HCCCeEEEEecc
Q 013476           73 DILVIG-GGATGCGVALDAA-TRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVG-aG~aGl~aA~~La-~~G~~V~liEk~  103 (442)
                      -|+|.| +|..|..+|..|+ ++|++|+++.+.
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~   39 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQ   39 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecC
Confidence            499999 4999999999999 899999999885

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=89.14  E-value=0.36  Score=42.97  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.-..++|||. |++|..+|..|.+.|++|+++.+.
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            44578999995 569999999999999999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=89.09  E-value=0.56  Score=39.04  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.0

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|+|| |..|...+.+|.++|++|+++.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            35999998 9999999999999999999999864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.93  E-value=0.32  Score=42.75  Aligned_cols=32  Identities=25%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             CcEEEECC-C-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGG-G-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGa-G-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      --|+|.|| | -.|..+|.+|+++|++|+++++.
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~   56 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYH   56 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCC
Confidence            45899998 7 59999999999999999999875

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=88.86  E-value=0.44  Score=43.25  Aligned_cols=33  Identities=21%  Similarity=0.492  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ...|+|||+|..|.+.|+.|+..|.  +|+++|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3579999999999999999998875  79999985

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.78  E-value=0.42  Score=46.07  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..-.|+|||.|..|..+|..|...|.+|+++|+.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~  306 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEID  306 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3457999999999999999999999999999985

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.73  E-value=0.44  Score=43.69  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||+|..|.+.|..|++.|++|+++++..
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            359999999999999999999999999998763

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=88.68  E-value=0.44  Score=42.04  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.-..++|||. |++|..+|..|++.|++|+++.+.
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            34578999995 579999999999999999999754

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=88.64  E-value=0.51  Score=44.75  Aligned_cols=35  Identities=26%  Similarity=0.625  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~V   75 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   75 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEe
Confidence            3789999999999999999999998 6999998754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=88.62  E-value=1.1  Score=43.28  Aligned_cols=57  Identities=14%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF  295 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~  295 (442)
                      ..+.+.|.+.+.+  ++|+++++|++|..+++  +|+ |++.+  .+....+.||.||+|+...
T Consensus       239 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~--~v~-v~~~~--g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          239 DRIYYAFQDRIGT--DNIVFGAEVTSMKNVSE--GVT-VEYTA--GGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             THHHHHHHHHHCG--GGEETTCEEEEEEEETT--EEE-EEEEE--TTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcCC--CeEEECCEEEEEEEcCC--eEE-EEEec--CCeEEEEECCEEEECCCHH
Confidence            4577777765532  78999999999998874  554 45443  2223579999999999864

>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}

Probab=88.42  E-value=0.088  Score=43.07  Aligned_cols=17  Identities=35%  Similarity=0.378  Sum_probs=0.0

Q ss_pred             CcchhhhhhhHHHHhhh
Q 013476            1 MSATRIRRFGAVLAAAA   17 (442)
Q Consensus         1 ~srR~f~~~~~~~~~~a   17 (442)
                      ||||.|||+++++++++
T Consensus        10 ~~rr~fl~~~~~a~~~~   26 (175)
T 4aay_B           10 IGRRQFLRGGALAAAGA   26 (175)
T ss_dssp             -----------------
T ss_pred             ccHHHHhhhhHHhhhhe
Confidence            68999999555444433

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.40  E-value=0.39  Score=42.25  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR-VGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~  103 (442)
                      ..|.|||+|..|...|..|++.|++ |.++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~   43 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT   43 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3699999999999999999999998 8999875

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=88.37  E-value=0.56  Score=40.66  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=28.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -|+|.|| |..|..+|.+|+++|++|+++.+..
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~   35 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARAGHTVIGIDRGQ   35 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            3899986 9999999999999999999999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.32  E-value=0.5  Score=44.40  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...|+|||.|..|..+|..|...|.+|+++|+.
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~d  252 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEID  252 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457999999999999999999999999999975

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=88.28  E-value=0.47  Score=44.09  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHHCCC---eEEEEeccC
Q 013476           69 SNPLDILVIGG-GATGCGVALDAATRGL---RVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGa-G~aGl~aA~~La~~G~---~V~liEk~~  104 (442)
                      .....|+|||+ |.+|+.|+..|...|+   .|+++|...
T Consensus       212 ~~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          212 ARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            34589999999 9999999999999998   999999864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=88.26  E-value=0.57  Score=43.03  Aligned_cols=35  Identities=17%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ...|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V   71 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQV   71 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence            5899999999999999999999998 7999998754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=88.24  E-value=0.6  Score=41.21  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -....++|||. +++|..+|..|.+.|++|+++.+.
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~  193 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK  193 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            34578999996 568999999999999999999764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=88.15  E-value=0.56  Score=44.39  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC---eEEEEe
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL---RVGLVE  101 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~---~V~liE  101 (442)
                      ....|+|+|+|-+|.++|..|.+.|.   +|+|++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            34679999999999999999999998   799999

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=88.11  E-value=0.46  Score=41.97  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...|+|||+|-+|.++++.|++.|. +|+|+.|.
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3579999999999999999999997 79999875

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=88.04  E-value=0.54  Score=43.16  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...-|+|+|.|.+|..+|..|.+.|.+|++.|..
T Consensus       174 ~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~  207 (355)
T 1c1d_A          174 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD  207 (355)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467999999999999999999999999988753

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=88.02  E-value=0.87  Score=44.46  Aligned_cols=54  Identities=19%  Similarity=0.162  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.|.+.   .|++|+++++|++|..+++  +++ |..   .+|+  .+.||.||+|++...
T Consensus       215 ~~l~~~l~~~---lg~~i~~~~~V~~i~~~~~--~v~-v~~---~~g~--~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          215 GQVSERIMDL---LGDRVKLERPVIYIDQTRE--NVL-VET---LNHE--MYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHH---HGGGEESSCCEEEEECSSS--SEE-EEE---TTSC--EEEESEEEECSCGGG
T ss_pred             HHHHHHHHHH---cCCcEEcCCeeEEEEECCC--eEE-EEE---CCCe--EEEeCEEEECCCHHH
Confidence            4566666543   3889999999999998774  443 433   3443  789999999999865

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=87.92  E-value=0.52  Score=46.68  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||+|-.|...|..|.+.|.+|++||+.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~  381 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQE  381 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCh
Confidence            679999999999999999999999999999985

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=87.71  E-value=0.47  Score=42.81  Aligned_cols=31  Identities=29%  Similarity=0.498  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      |+|||+|.+|.+.|+.|+..|+ .|.|+|...
T Consensus         2 I~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            2 ITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            8999999999999999998888 599999863

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=87.58  E-value=0.67  Score=43.64  Aligned_cols=60  Identities=8%  Similarity=0.004  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      ..+...+.+.+++.|++++++++++++..+    .   |++   .+|+  ++.+|.||+|+|...+.+++.+
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~----~---v~~---~~g~--~~~~D~vi~a~G~~~~~~l~~~  277 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIREH----E---IVD---EKGN--TIPADITILLPPYTGNPALKNS  277 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECSS----E---EEE---TTSC--EEECSEEEEECCEECCHHHHTS
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCC----e---EEE---CCCC--EEeeeEEEECCCCCccHHHHhc
Confidence            467778888889999999999999988532    3   344   3443  7999999999998776666654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.47  E-value=0.48  Score=44.68  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...|+|||+|.+|..+|..|...|. +|+++++.
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~  200 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT  200 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4579999999999999999999998 89999875

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=87.43  E-value=0.71  Score=40.71  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=29.8

Q ss_pred             CCCCcEEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -....++|||.| ++|..+|..|.+.|++|+++.+.
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            345689999964 68999999999999999999653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=87.30  E-value=0.65  Score=42.47  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|.|||.|..|...|..|+..|.+|+++++..
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            469999999999999999999999999998853

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=87.13  E-value=0.32  Score=45.41  Aligned_cols=32  Identities=34%  Similarity=0.491  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATR--GLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~  104 (442)
                      ||+|||||++|+++|+.|+++  |.+|+||||..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~   35 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKND   35 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence            899999999999999999999  99999999986

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=87.10  E-value=0.6  Score=41.28  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             CcEEEECC---ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGG---GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGa---G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      --|+|.||   |..|..+|..|+++|++|+++.+..
T Consensus         7 k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            7 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34899997   6899999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-17
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	1e-14
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	3e-10
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	5e-10
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	9e-10
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-09
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	4e-08
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	8e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	4e-06
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	7e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-05
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	4e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	5e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	5e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	6e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	7e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	8e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	9e-05
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	9e-05
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	9e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	1e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	1e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	5e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	5e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	5e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	6e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	6e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	0.002
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.002
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	0.003
d1kifa2	93	d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus	0.003
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	0.004

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 80.2 bits (196), Expect = 2e-17
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 37/293 (12%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           + +VIGGG  G  +A   A       L E       T+S +  ++       E+  F   
Sbjct: 6   EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAF--- 62

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
                  F      +++ +       AL  +        +       +    +     L 
Sbjct: 63  -------FDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLD 115

Query: 193 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNH 252
              +YS +E  E  P  +          + +  D  +    +       A + GA +  H
Sbjct: 116 SVSWYSKEEVLEKEPYASGDI----FGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEH 171

Query: 253 AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMIC 312
             V+ + +D       G  +       +   +A  VV A+G +     K    N      
Sbjct: 172 TPVLHVERD-------GEALFIKTPSGDV--WANHVVVASGVWSGMFFKQLGLN-NADGK 221

Query: 313 PSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVA-----GTTDSD 360
           P  G H        PE   ++         + + P  G  ++        + D
Sbjct: 222 PYIGRH--------PEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQD 266

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 71.7 bits (174), Expect = 1e-14
 Identities = 48/337 (14%), Positives = 97/337 (28%), Gaps = 45/337 (13%)

Query: 73  DILVIGGGATGCGVALDAATRGLR-VGLVERED--FSSGTSSRSTKLIHGGVRYLEKAVF 129
            I++IG G  G  +A +  TRG   + ++++       G++S +  L+            
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQ---------T 53

Query: 130 NLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRH 189
           N          + +E+   +  +     N +  +        +      L          
Sbjct: 54  NPSKTMASFAKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYA-----AA 108

Query: 190 LLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAV 249
                R  S  E  EL+P   +   +  L G  V  DG  + +R    L      AG   
Sbjct: 109 WGIEGRLLSPAECQELYP---LLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTY 165

Query: 250 LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309
                V  + +     R+ G +  +          A +VV+ AG +     K+       
Sbjct: 166 RGSTTVTGIEQS--GGRVTGVQTADG------VIPADIVVSCAGFWG---AKIGAMIGMA 214

Query: 310 MICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSD--TVITLLP 367
           +      +     +         +      G    M   L     G +++D         
Sbjct: 215 VPPDGGPLLGESKELDGFYVAEAVWVTHSAGVAKAMAELL---TTGRSETDLGECDITRF 271

Query: 368 EPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPL 404
           E  +   +++ +                  +  + PL
Sbjct: 272 EDVQLTPEYVSETSQQNFV---------EIYDVLHPL 299

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 58.8 bits (141), Expect = 3e-10
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 61  SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
              IAA  S    +LV+G G+ G   +L A   G  V LV++  FS G S  S   ++  
Sbjct: 9   QKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAV 68

Query: 121 VRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLK 180
               + A    D              +  ++     ++            + V +   L 
Sbjct: 69  GTKQQTAHGVED--------KVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLG 120

Query: 181 MY 182
             
Sbjct: 121 AN 122

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 57.8 bits (138), Expect = 5e-10
 Identities = 36/296 (12%), Positives = 71/296 (23%), Gaps = 43/296 (14%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++V+G G+ G       A +G++  LV+  D      S      HG  R +  A     
Sbjct: 5   DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH-----HGDTRIIRHAYGEGR 59

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
                 +       +        +      +                   +      LL 
Sbjct: 60  EYVPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLE 119

Query: 193 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNH 252
                      E+           +         G +            A   GA VL H
Sbjct: 120 ---------GDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTH 170

Query: 253 AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMIC 312
             V                ++   +   +   A  ++ + G +               + 
Sbjct: 171 TRVEDFDIS-------PDSVKIETANGSY--TADKLIVSMGAWN------------SKLL 209

Query: 313 PSSGVHIVLPDYYS---PEGMGLIVPKTKDGRVVFMLPWLGRTVA-----GTTDSD 360
               + I    +     PE   +++     G        +G  ++     G T+ D
Sbjct: 210 SKLNLDIPDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHD 265

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 57.3 bits (137), Expect = 9e-10
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 64  IAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY 123
           IAA      D+++IG G  G   A+ A   G +V L+E+E    G +  +   ++     
Sbjct: 16  IAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETK 75

Query: 124 LEKAVFNLD-----YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVG 178
            +  +   D               + + + V   A + S+++  +T        V    G
Sbjct: 76  PQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGG 135

Query: 179 LKMY 182
             + 
Sbjct: 136 ASVN 139

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 59  QESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118
           +  A +A+   + +D++V+G G  G   A+ A   G +V L+E+E    G +  +   ++
Sbjct: 4   ERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMN 63

Query: 119 GGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVG 178
                 +KA          +        +  ++   ++++            + V +   
Sbjct: 64  AAWTDQQKAKK--------ITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTA 115

Query: 179 LKMYDLVAGRHLLHLSRYY 197
           +       G          
Sbjct: 116 MGADLTDVGMMGGASVNRA 134

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 42/274 (15%), Positives = 68/274 (24%), Gaps = 49/274 (17%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
            ++V+G G  G   AL  A +G  V ++ R+     +S        G         F   
Sbjct: 8   RVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWT----PFMTL 63

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
               +         K+ +   P         T  F   E           D+      L 
Sbjct: 64  TDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLG--HWYKDITPNYRPL- 120

Query: 193 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNH 252
                    S+E  P                Y    ++  +    LA      GA     
Sbjct: 121 --------PSSECPPGAIGVT----------YDTLSVHAPKYCQYLARELQKLGA----- 157

Query: 253 AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMIC 312
                              +    S ++    A +VVNA G    S+  + DQ       
Sbjct: 158 -------------TFERRTVT---SLEQAFDGADLVVNATGLGAKSIAGIDDQARGGPRV 201

Query: 313 PSSGVH---IVLPDYYSPEGMGLIVPKTKDGRVV 343
            +  +           S         K K+  +V
Sbjct: 202 EAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLV 235

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 51.7 bits (122), Expect = 8e-08
 Identities = 33/262 (12%), Positives = 73/262 (27%), Gaps = 18/262 (6%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D LVIGGG  G   A+    +GL   ++             +    GG++    ++ N  
Sbjct: 7   DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS----HSAAAQGGMQA---SLGNSK 59

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH 192
                       +  +          A   +         +  W           R  + 
Sbjct: 60  MSDGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAII 119

Query: 193 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNH 252
            ++  +  E       +  +    + K    Y            G  +  A+A   +   
Sbjct: 120 NAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADAT-------GHTMLFAVANECLKLG 172

Query: 253 AEVI----SLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308
             +     ++       +  GA +R+ ++G      AK  + A G +    +   +  V 
Sbjct: 173 VSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVC 232

Query: 309 PMICPSSGVHIVLPDYYSPEGM 330
                +  +   +    +  G+
Sbjct: 233 EGTGTAIALETGIAQLGNMGGI 254

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++VIGGG +G   A+ AA  G  V L+++ +      + S     G      +   +  
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGG---GRCNVTNRLPLDEI 60

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLV 185
              +      L     +  N   ++          +      + V  K   +V
Sbjct: 61  VKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVV 113

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.3 bits (106), Expect = 7e-06
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 73  DILVIGGGATGCGVALDAA----TRGLRVGLVEREDFSSGTSSRST 114
           DIL+IGGG +GCG A +AA      GL+V LVE+       +    
Sbjct: 23  DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQG 68

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT-----SSRSTKLIHGGVRYLE-- 125
           D++V+GGG  G   A  AA  GL+V +VER     G         S  L+H      E  
Sbjct: 8   DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR 67

Query: 126 -KAVFNLDYGQLKLVFHALEERKQVI 150
             A   + Y + +L    L   K  +
Sbjct: 68  HLAANGIKYPEPELDIDMLRAYKDGV 93

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 14/112 (12%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D +++G G  G   A +      +V ++E+ +   G +   T+   G   +         
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA--YTEDCEGIQIH--------K 52

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDL 184
           YG    +FH  ++      N     N           ++   + +   M   
Sbjct: 53  YGA--HIFHTNDKYIWDYVNDLVEFN--RFTNSPLAIYKDKLFNLPFNMNTF 100

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 64  IAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109
           +  N+    D + IGGGA G   +      G R  +V+R  F  G+
Sbjct: 35  VDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDF 105
           + LV+G G  G   A+ AA  G +V +VE+ + 
Sbjct: 5   ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL 37

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVERE 103
           D++VIGGG+ G   A  AA    +V LVE+ 
Sbjct: 3   DLIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDF 105
           D + IGGG+ G      AA  G +  L+E ++ 
Sbjct: 4   DYIAIGGGSGGIASINRAAMYGQKCALIEAKEL 36

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSS 111
           D++V+G G T C ++   +  G +V  ++R  +  G SS
Sbjct: 8   DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESS 46

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 10/113 (8%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVERED----------FSSGTSSRSTKLIHGGVR 122
            +L+IGGG  G   A+ A   G+   LVE +             S       +  H   R
Sbjct: 7   TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASR 66

Query: 123 YLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYY 175
           + E +   +     +L        K  I +      A                
Sbjct: 67  FTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK 119

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++V+G G T C ++   +  G +V  ++++D   G +  ++  +       ++   + +
Sbjct: 7   DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA--ASVTLSQLYEKFKQNPISKE 64

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYW 176
             + K        R   +   P    A   +T      +V  Y 
Sbjct: 65  ERESKFGKD----RDWNVDLIPKFLMANGELTNILIHTDVTRYV 104

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109
           D+++IGGG  G   A+ AA  G +   +E+     GT
Sbjct: 5   DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 41

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSS 111
           D++VIG G  G   A+ +A  GL+  L+E+     G ++
Sbjct: 5   DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           + ++IG GA G   A   A  G  V + +           S
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMS 46

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 7e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109
           D+++IGGG  G   A+ AA  G     VE+     GT
Sbjct: 7   DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT 43

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVERE 103
           D LVIGGG+ G   A  AA  G R  +VE  
Sbjct: 5   DYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 74  ILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRY 123
           ++VIG G  G   AL    R   V        ++   +  +T  +  G+  
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQ 53

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 26/255 (10%), Positives = 62/255 (24%), Gaps = 8/255 (3%)

Query: 69  SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV 128
           SNP  ++++G G  G   A   A  G +V ++E  +   G   R     +    +     
Sbjct: 28  SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG---RVRTYRNEEAGWYANLG 84

Query: 129 FNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGR 188
                 + ++V   + +    +      ++                      +   V   
Sbjct: 85  PMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPS 144

Query: 189 HLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAA 248
                +     +   ++   L        L     Y   +      ++       +    
Sbjct: 145 EAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLL 204

Query: 249 VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308
             +    +S I+    + I     R +      D     +               +  V 
Sbjct: 205 NEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKV-----HFNAQVI 259

Query: 309 PMICPSSGVHIVLPD 323
            +      V +V   
Sbjct: 260 KIQQNDQKVTVVYET 274

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVERE 103
           D+L++G G  G   A+ +A +G+R GL+   
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
           D+++IGGG+ G   A +AA    +V +++    +   ++  
Sbjct: 5   DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWG 45

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV 121
           D +VIG G  G   AL  +  G    L+ +   +       T    GG+
Sbjct: 9   DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS----HTVSAQGGI 53

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 7/118 (5%)

Query: 71  PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFN 130
              I V+GG  +G   AL     G+ V + ER             +    V YL +    
Sbjct: 4   TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE 63

Query: 131 LDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGR 188
           LD         ++        +A                     Y    +++      
Sbjct: 64  LDS-------ISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYH 114

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRST 114
           D+L+IG GA G  +AL  A +  +V ++ +   + G++  + 
Sbjct: 9   DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQ 49

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 73  DILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGV 121
           D+ ++G G  G   A+ AA      ++ L+ +           T    GG 
Sbjct: 7   DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS----HTVAAEGGS 53

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKA 127
            + +IG G +G  +       G+   ++ER+         R+  L  G V  L +A
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA 59

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 74  ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDY 133
           IL++G G +G  +    A +G +V ++++ D   G S  +       + +         Y
Sbjct: 5   ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVH--------VY 56

Query: 134 GQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDL 184
           G    +FH   E      N    +  +P +           + + + ++ +
Sbjct: 57  GP--HIFHTDNETVWNYVN--KHAEMMPYVNRVKATVNGQVFSLPINLHTI 103

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 3/123 (2%)

Query: 71  PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFN 130
           P+DIL+ G G  G   AL     G+    +               +    V  L +    
Sbjct: 1   PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLG 60

Query: 131 ---LDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAG 187
                          +++    + + P    A             +   +   + + +  
Sbjct: 61  PALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQ 120

Query: 188 RHL 190
           + +
Sbjct: 121 QAV 123

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 72  LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNL 131
           +++ V+GGG +G  VA    +RG    L+E               + G V     A + +
Sbjct: 1   MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR-----------LGGAVGTHALAGYLV 49

Query: 132 DYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMY 182
           + G     F   E   + +  A +L   +    P      V        + 
Sbjct: 50  EQGP--NSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVP 98

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 68  NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105
            ++   + ++G G      A+ AA   L+  L E    
Sbjct: 2   ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA 39

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVE 101
            +L++G G +G   A   A +G+RVGL+ 
Sbjct: 4   QVLIVGAGFSGAETAFWLAQKGVRVGLLT 32

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 73  DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132
           D++V+GGG +G   A      GL V ++E  D   G  + + +        L  +     
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR-TYTLRNQKVKYVDLGGSYVGPT 59

Query: 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDW 169
             ++  +   L      +     L + +   +  F  
Sbjct: 60  QNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRG 96

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 73  DILVIGGGATGCGVALDAATR-GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV 128
           D++V+G G+ G   A + +    ++V ++E+     G          GG  +    V
Sbjct: 35  DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG------AWLGGQLFSAMIV 85

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]} Length = 93

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 313 PSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHED 372
           P  G  I +   +    +     +       +++P L     G T            +  
Sbjct: 3   PGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWN--EINNIQ 60

Query: 373 EIQFILDAISDYLNVKVRRTDVLSAWSGIRP 403
           +   I +         ++   ++  ++G RP
Sbjct: 61  DHNTIWEGCCRLEP-TLKDAKIVGEYTGFRP 90

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 18/179 (10%)

Query: 74  ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDY 133
           ++++G G  G  +A    ++   V ++++E     +    +  I G +       ++LD+
Sbjct: 3   VVIVGNGPGGFELA-KQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 61

Query: 134 GQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHL 193
            + + +   L E  ++I            +T   +                +A R  +H 
Sbjct: 62  YRKRGIEIRLAEEAKLIDRGRK-----VVITEKGEVPYDTLVLATGAPNVDLARRSGIHT 116

Query: 194 SRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNH 252
            R     ++            D +    ++             G A  A      + + 
Sbjct: 117 GRGILIDDNFRTSAKDVYAIGDCAEYSGII------------AGTAKAAMEQARVLADI 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.94
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.94
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.91
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.88
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.87
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.86
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.77
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.76
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.74
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.71
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.7
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.58
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.57
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.57
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.51
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.35
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.35
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.34
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.34
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.33
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	99.31
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.3
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.29
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.28
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.27
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	99.22
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.22
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.19
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.19
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.11
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.1
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.1
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.08
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.07
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.06
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.05
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.02
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.02
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.01
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.93
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.92
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.92
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.89
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.88
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.88
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	98.88
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.84
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.83
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.82
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.81
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.8
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.77
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.76
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.75
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.74
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.73
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.71
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.71
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.7
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.69
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.67
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.65
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.65
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.63
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.63
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.63
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.62
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.61
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.57
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.56
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.5
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.49
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.46
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.44
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.39
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.35
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.33
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.3
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.3
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.28
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.27
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.25
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.23
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.15
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.11
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.09
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.93
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.81
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.68
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.53
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.4
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.25
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.16
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.16
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.15
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.94
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.77
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.73
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	96.64
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.64
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.61
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.45
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.42
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.38
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.28
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.21
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.08
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.93
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.56
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.35
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.34
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.22
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.21
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.9
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.83
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.67
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.58
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.46
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.45
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.4
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.3
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.26
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.11
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.06
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.06
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.85
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.79
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.78
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.76
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.71
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.48
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.15
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.07
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.02
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.02
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.99
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.99
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.97
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.89
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.76
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.73
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.44
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.28
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	92.26
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.1
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	91.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.8
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.76
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.52
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.28
d2gf3a2	104	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.84
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	90.65
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.5
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.36
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.24
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.14
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.9
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.85
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.51
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.22
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	89.2
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.05
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.99
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.77
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.6
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.5
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.37
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.31
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.04
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.48
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.34
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.21
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.88
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.81
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.75
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.45
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	85.88
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	85.84
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	85.55
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.5
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	85.22
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.15
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.13
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.97
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	84.97
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.6
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.58
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.55
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	84.46
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	84.34
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.14
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	83.99
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.92
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.85
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	83.8
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.73
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.7
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	83.57
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.41
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.39
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	83.11
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.87
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	82.87
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	82.65
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	82.5
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	82.46
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	82.45
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	82.41
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.33
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.2
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.2
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.07
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.04
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	82.0
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	81.88
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	81.87
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.79
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	81.77
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	81.7
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	81.56
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	81.51
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.5
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.46
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.27
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.99
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.94
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.7
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	80.6
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	80.43
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	80.42
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	80.28
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	80.25
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.11
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.04

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.94  E-value=4.4e-27  Score=213.02  Aligned_cols=213  Identities=19%  Similarity=0.190  Sum_probs=143.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHH-hhhccCcchHHHHHHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEK-AVFNLDYGQLKLVFHALEERKQV  149 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  149 (442)
                      +|||||||||++|+++|++|+++|++|+||||+.+++++|+++.|+++........ ...++.....+.+.+...+....
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~   83 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYAL   83 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccccccccccccccccccchhhhhhhhhccccccccccc
Confidence            59999999999999999999999999999999999999999999988765432211 00111111111111111111111


Q ss_pred             HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476          150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM  229 (442)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  229 (442)
                      ......+... ..+......          .....++........++++.+++...+|.+    ......+.+.+.++.+
T Consensus        84 ~g~~~~~~~~-g~l~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~g~~~~~~~g~i  148 (276)
T d1ryia1          84 SGVDIRQHNG-GMFKLAFSE----------EDVLQLRQMDDLDSVSWYSKEEVLEKEPYA----SGDIFGASFIQDDVHV  148 (276)
T ss_dssp             HCCCCCCBCC-CEEEEESSH----------HHHHHHHTTTTSTTEEEEEHHHHHHHCTTS----CTTCCEEEEETTCCBC
T ss_pred             cccccccccc-cceeeeeec----------ccccccccccccccccccccccccccCccc----ccceeEEEEeccceee
Confidence            0111111111 111111111          122233334444557888999999999987    4343444455678999


Q ss_pred             ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +|..++..|.+.++++|++|+++++|++|.++++   +++|++.      ..+|+||.||+|+|.||+.|++++|+..
T Consensus       149 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~---~~~V~t~------~g~i~a~~vV~AaG~~s~~l~~~~G~~~  217 (276)
T d1ryia1         149 EPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGE---ALFIKTP------SGDVWANHVVVASGVWSGMFFKQLGLNN  217 (276)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSS---SEEEEET------TEEEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred             ecccchhHHHHHHHHcCCEEecceEEEeEEeecc---eEEEecC------CeEEEcCEEEECCCccHHHHHhhcCCCc
Confidence            9999999999999999999999999999988763   4455542      2479999999999999999999999874

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.94  E-value=1.6e-26  Score=212.34  Aligned_cols=210  Identities=18%  Similarity=0.226  Sum_probs=140.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC--CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDF--SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      .||||||||++|+++|++|+++|. +|+||||+.+  ++++|+++.|+++.....         .....+....+.....
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~~~~gas~~~~G~i~~~~~~---------~~~~~l~~~~~~~~~~   72 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPS---------KTMASFAKYTVEKLLS   72 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSC---------HHHHHHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCccccccccceeccCCCC---------HHHHHHHHHHHHHHHh
Confidence            699999999999999999999996 6999999963  467888888887642211         0111111111222111


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeE-EEeeCc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA-VVYYDG  227 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~  227 (442)
                      +.............+............   .+..+.+ +..+.+ .++++.++..+.+|..    ......++ +.+.++
T Consensus        73 ~~~~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g  143 (305)
T d1pj5a2          73 LTEDGVSCFNQVGGLEVATTETRLADL---KRKLGYA-AAWGIE-GRLLSPAECQELYPLL----DGENILGGLHVPSDG  143 (305)
T ss_dssp             CEETTEESEECCCEEEEESSHHHHHHH---HHHHHHH-HHHTCC-CEEECHHHHHHHCTTS----CGGGCCEEEEETTCE
T ss_pred             hhhcccccccccccccccchhhhHHHH---HHHHHHH-Hhhccc-ccccchHHhhhhcccc----cccccccceeccccc
Confidence            111111111111111111111111111   1222222 244554 7889999999988875    33444444 446788


Q ss_pred             ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476          228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV  307 (442)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~  307 (442)
                      +++|..++..|.+.+++.|++|+++++|++|+.++ + ++++|.+.      ..+|+||.||+|+|.|++.|++++|+.+
T Consensus       144 ~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~-~-~v~~V~T~------~g~i~a~~VV~aaG~~s~~l~~~~g~~l  215 (305)
T d1pj5a2         144 LASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-G-RVTGVQTA------DGVIPADIVVSCAGFWGAKIGAMIGMAV  215 (305)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEET------TEEEECSEEEECCGGGHHHHHHTTTCCC
T ss_pred             ccchhhhhhhHHhhhhcccccccCCceEEEEEEeC-C-EEEEEecc------ceeEECCEEEEecchhHHHHHHHcCCcc
Confidence            99999999999999999999999999999999988 5 89888752      2479999999999999999999998775

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.91  E-value=3.2e-23  Score=187.80  Aligned_cols=210  Identities=15%  Similarity=0.170  Sum_probs=133.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC--CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      .|||||||||++|+++|++|+++|++|+||||...++  +++..+.+++......        .....++.....+.+..
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~--------~~~~~~l~~~s~~~~~~   74 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGE--------GREYVPLALRSQELWYE   74 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTT--------CGGGHHHHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCC--------cchhhhhcccccceeec
Confidence            5999999999999999999999999999999986433  2333333332211110        01111111122222222


Q ss_pred             HHHhCC-cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-eeC
Q 013476          149 VIRNAP-HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYD  226 (442)
Q Consensus       149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~  226 (442)
                      +..... ........+... ...+.....   +..+.. +..+.+ .+.++.+++.+.+|.+    ..+...+.++ +.+
T Consensus        75 l~~e~~~~~~~~~g~l~~~-~~~~~~~~~---~~~~~~-~~~g~~-~~~l~~~e~~~~~p~~----~~~~~~~~~~~~~~  144 (281)
T d2gf3a1          75 LEKETHHKIFTKTGVLVFG-PKGESAFVA---ETMEAA-KEHSLT-VDLLEGDEINKRWPGI----TVPENYNAIFEPNS  144 (281)
T ss_dssp             HHHHCSSCCEECCCEEEEE-ETTCCHHHH---HHHHHH-HHTTCC-CEEEETHHHHHHSTTC----CCCTTEEEEEETTC
T ss_pred             chhhhhhccccccceeeee-ecchhhhhh---hhhhhh-ccccch-hhhhhhHhhhhhhhcc----cccccceeeecccc
Confidence            111111 111111111100 011111111   222333 255665 7889999999999988    5455555554 568


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      ++++|..++..|.+.++++|++|+++++|++|..++++  + .|.+   .   ..++.||.||+|+|.|++.|++++|+.
T Consensus       145 g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~--v-~V~t---~---~g~i~a~~VViAaG~~s~~l~~~lg~~  215 (281)
T d2gf3a1         145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--V-KIET---A---NGSYTADKLIVSMGAWNSKLLSKLNLD  215 (281)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--E-EEEE---T---TEEEEEEEEEECCGGGHHHHGGGGTEE
T ss_pred             ccccccccccccccccccccccccCCcEEEEEEEECCE--E-EEEE---C---CcEEEcCEEEECCCCcchhhHHhcCCc
Confidence            89999999999999999999999999999999998854  3 2333   1   247999999999999999999998865


Q ss_pred             C
Q 013476          307 V  307 (442)
Q Consensus       307 ~  307 (442)
                      .
T Consensus       216 ~  216 (281)
T d2gf3a1         216 I  216 (281)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.88  E-value=8.4e-22  Score=180.75  Aligned_cols=195  Identities=17%  Similarity=0.171  Sum_probs=123.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      +.+|||||||+|++||++|++|+++|++|+||||.+..+++|..+.|.+............ . ......+.+...... 
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~-~-~d~~~~~~~d~~~~~-   90 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKK-I-TDSPELMFEDTMKGG-   90 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTT-C-CCCHHHHHHHHHHHT-
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhh-c-cchHHHHHHHHHhhh-
Confidence            4569999999999999999999999999999999998888888777765433222111111 0 011111111111110 


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                           ..+         ........+.....+..+|+. .+|++..+...       .       ..........+....
T Consensus        91 -----~~~---------~d~~lv~~~~~~~~~~i~~L~-~~Gv~~~~~~~-------~-------~~~~~~~~~~~~~~~  141 (308)
T d1y0pa2          91 -----QNI---------NDPALVKVLSSHSKDSVDWMT-AMGADLTDVGM-------M-------GGASVNRAHRPTGGA  141 (308)
T ss_dssp             -----TTC---------SCHHHHHHHHHHHHHHHHHHH-HTTCCCCEEEC-------C-------TTCSSCCEEESTTTC
T ss_pred             -----hhc---------cchHHHHHHHHhhhHHHHHHH-HcCCCcccccc-------c-------ccccccccccccccc
Confidence                 000         001111112222334556664 45554211100       0       011122233333444


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .....++..+.+.+++.|++|++++++++|+.+++| +|+||++++ .++....|+||.||+|||+|+.
T Consensus       142 ~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G-~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG~~~  208 (308)
T d1y0pa2         142 GVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG-TVKGILVKG-MYKGYYWVKADAVILATGGFAK  208 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS-CEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred             chHHHHHHHHHHHHHhccceEEEeeccchhhhhccc-ccccccccc-cccceeEeecCeEEEccCcccc
Confidence            445678889999999999999999999999998878 999999987 4445678999999999999985

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.87  E-value=5.8e-21  Score=176.15  Aligned_cols=195  Identities=15%  Similarity=0.165  Sum_probs=123.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ..++||||||+|++||++|+.|+++|++|+||||.+..+++|..+.|.+............  ..+..+...+.+.....
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~--~~d~~~~~~~d~~~~~~   98 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLG--IEDKKQIMIDDTMKGGR   98 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTT--CCCCHHHHHHHHHHHTT
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcc--cCCCHHHHHHHHHhccc
Confidence            4469999999999999999999999999999999988788887777665433222111111  11122222222111100


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                            .+         ........+.....+..+++. ..|++... +..      ++.       ........+..+.
T Consensus        99 ------~~---------~d~~~~~~~~~~~~~~i~~l~-~~Gv~~~~-~~~------~~g-------~~~~~~~~~~~~~  148 (322)
T d1d4ca2          99 ------NI---------NDPELVKVLANNSSDSIDWLT-SMGADMTD-VGR------MGG-------ASVNRSHRPTGGA  148 (322)
T ss_dssp             ------TC---------SCHHHHHHHHHTHHHHHHHHH-HTTCCCCE-EEC------CTT-------CSSCCEEESTTTC
T ss_pred             ------cc---------cCHHHhhhhhhhhhhhhhhhh-hhcccccc-ccc------ccc-------ccccccccccccc
Confidence                  00         001111112222334455554 45554211 110      110       1122223333444


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .....+...|.+.+.++|++|+++++|++|+.+++| +|+||++.+ ..+....|+||.||+|||+|+.
T Consensus       149 ~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G-~V~Gv~~~~-~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         149 GVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG-KVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS-CCCEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred             chhHHHHHHHHHHHHhcCceEEEeeecccccccccc-cccceEEEe-ecccEEEEeCCeEEEcCCCccc
Confidence            456778899999999999999999999999998778 999999988 4445567999999999999985

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.86  E-value=7.2e-21  Score=174.95  Aligned_cols=195  Identities=16%  Similarity=0.143  Sum_probs=124.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccch-hhhhHHhhhccCcchHHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG-VRYLEKAVFNLDYGQLKLVFHALEER  146 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (442)
                      ++.++||||||+|++||+||++|+++|++|+||||.+..+++|..+.|.+... ..........   ...+..++.....
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~---d~~~~~~~d~~~~   92 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVE---DKVEWFIEDAMKG   92 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccC---CcHHHHHHHHHHh
Confidence            35579999999999999999999999999999999998888888777765432 2222111111   1222222211111


Q ss_pred             HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476          147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD  226 (442)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  226 (442)
                      ..      .+         ........+...+.+..+|+. ..|++......       .       ..........+..
T Consensus        93 ~~------~~---------~d~~lv~~~~~~a~~~i~~l~-~~Gv~~~~~~~-------~-------gg~~~~r~~~~~~  142 (317)
T d1qo8a2          93 GR------QQ---------NDIKLVTILAEQSADGVQWLE-SLGANLDDLKR-------S-------GGARVDRTHRPHG  142 (317)
T ss_dssp             TT------TC---------SCHHHHHHHHHHHHHHHHHHH-HTTCCCCEEEC-------C-------TTCSSCCEEECSS
T ss_pred             hc------cc---------cchhHHHHHHhhhhhhhhhHH-Hhhhccccccc-------c-------cCccccccccccc
Confidence            00      00         001111122233334556664 45554211110       0       0011222233344


Q ss_pred             cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      +......++..|.+.++++|+++++++++++|..++++ +|+||++.+ .+++...+.||.||+|||+|+.
T Consensus       143 g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g-~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         143 GKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH-SVVGAVVHG-KHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS-BEEEEEEEE-TTTEEEEEEEEEEEECCCCCTT
T ss_pred             ccccchhhhHHHHHHhhhccceeeeccchhheeecccc-cceeeEeec-ccceEEEEeccceEEecccccc
Confidence            44445678899999999999999999999999887778 999999998 5666677999999999999985

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.77  E-value=5.4e-18  Score=157.01  Aligned_cols=205  Identities=18%  Similarity=0.196  Sum_probs=115.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      ...|||||||+|++||+||++|+++|++|+||||..+.+++|..+.|.+........    ....++.+.......... 
T Consensus         3 ~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S~~a~GGi~a~~~~~~----~~~~ds~~~~~~d~~~~g-   77 (336)
T d2bs2a2           3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSK----MSDGDNEDLHFMDTVKGS-   77 (336)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCEECCCCCSG----GGTTCCHHHHHHHHHHHT-
T ss_pred             ceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCchhhccchHhhhccccc----cCCCCCHHHHHHHHHHhh-
Confidence            456999999999999999999999999999999998777777666443322110000    000111111111111100 


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-------------hhCCcccccccc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-------------ELFPTLAMKAKD  215 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~~p~~~~~~~~  215 (442)
                           ..+         .................+++. .++++...........             .....+    ..
T Consensus        78 -----~~~---------~~~~~v~~~~~~~~~~i~~l~-~~g~~f~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~  138 (336)
T d2bs2a2          78 -----DWG---------CDQKVARMFVNTAPKAIRELA-AWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLI----HS  138 (336)
T ss_dssp             -----TTC---------SCHHHHHHHHHHHHHHHHHHH-HTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSB----CC
T ss_pred             -----ccc---------ccHHHHHHHHHhccHHHHHHH-HhcCCccccccccccccccccccccccccccccce----ec
Confidence                 000         000001111122223344443 3333211100000000             000000    00


Q ss_pred             CCceeEE---EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEcc
Q 013476          216 RSLKGAV---VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA  292 (442)
Q Consensus       216 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAt  292 (442)
                      ....+..   .......+...+...|.+.+++.|++|++++++++|+.++ + +|.|+.+.+..+|+...+.||.||+||
T Consensus       139 ~~~gG~~~~r~~~~~~~~G~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~-~-~v~g~~~~~~~~g~~~~i~Ak~VvlAT  216 (336)
T d2bs2a2         139 RDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQD-G-KCYGAVVRDLVTGDIIAYVAKGTLIAT  216 (336)
T ss_dssp             BCCTTCSSCCEECSTTCHHHHHHHHHHHHHHHHTCEEECSEEEEEEEEET-T-EEEEEEEEETTTCCEEEEECSEEEECC
T ss_pred             ccCCCcceeeeEeecCCCHHHHHHHHHHHHHhccccccceeeeeeccccc-c-cccceeEEeccCCcEEEEecCeEEEec
Confidence            0000000   0011122346788899999999999999999999999988 5 999999988778888899999999999


Q ss_pred             CCChHHH
Q 013476          293 GPFCDSV  299 (442)
Q Consensus       293 G~~s~~l  299 (442)
                      |+++...
T Consensus       217 GG~~~~~  223 (336)
T d2bs2a2         217 GGYGRIY  223 (336)
T ss_dssp             CCCGGGS
T ss_pred             ccccccc
Confidence            9998543

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.8e-18  Score=155.76  Aligned_cols=194  Identities=14%  Similarity=0.127  Sum_probs=110.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE  145 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (442)
                      ++.++||||||+|++||+||++|+++  |++|+||||....++.|....|.+.....         ..++.+...+....
T Consensus         2 ~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~---------~~Ds~e~~~~dt~~   72 (311)
T d1kf6a2           2 QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ---------DHDSFEYHFHDTVA   72 (311)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCS---------TTCCHHHHHHHHHH
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcC---------CCCCHHHHHHHHHh
Confidence            35679999999999999999999986  78999999998666666555443322110         01222222211111


Q ss_pred             HHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEee
Q 013476          146 RKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY  225 (442)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  225 (442)
                      ...      .+         +...........+....+++. .++++.............+..       .......  .
T Consensus        73 ~g~------~~---------~d~~~v~~~~~~~~~~i~~L~-~~g~~f~~~~~~~~~~~~~~~-------~~~~r~~--~  127 (311)
T d1kf6a2          73 GGD------WL---------CEQDVVDYFVHHCPTEMTQLE-LWGCPWSRRPDGSVNVRRFGG-------MKIERTW--F  127 (311)
T ss_dssp             HTT------TC---------SCHHHHHHHHHHHHHHHHHHH-HTTCCCCBCTTSSBCCBCCTT-------CSSCCEE--C
T ss_pred             hcc------Cc---------cHHHHHHHHHHhhhHhHHhhh-hcccccccccccccccccccc-------ccccccc--c
Confidence            110      00         011111122233334455554 455441111110000000000       0111111  1


Q ss_pred             CcccChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          226 DGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .+......++..+++.+.+ .+++++.++++++|+.++ | +|.||++.+..+|+...+.||.||||||+++.
T Consensus       128 ~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~-g-~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         128 AADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD-G-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             STTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEET-T-EEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             cccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEecC-C-cceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence            1112224455555555444 589999999999999988 6 99999988767888788999999999999984

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.74  E-value=7.7e-18  Score=149.21  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ...+.+.|.+.+++.|++|+++++|++|..++ + ++.+|+.+   +++  +++||.||+|||++|
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~-~~~~v~~~---~g~--~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-G-QTKAVILQ---TGE--VLETNHVVIAVGGKS  167 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEET---TCC--EEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC-C-EEEEEEeC---CCC--eEecCeEEEccCCcc
Confidence            35688899999999999999999999999887 4 88888763   443  799999999999976

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=9.5e-17  Score=147.90  Aligned_cols=203  Identities=13%  Similarity=0.046  Sum_probs=117.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      .+++||+|||+|++||+||++|+++|++|+||||....++.|....|.+......       ...++.+...+.......
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~-------~~~Ds~e~~~~Dtl~aG~   77 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGN-------THEDNWEWHMYDTVKGSD   77 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEECCCCS-------SSCCCHHHHHHHHHHHHT
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHHHHhhhHheEcCC-------CCCCCHHHHHHHHHHhhh
Confidence            5679999999999999999999999999999999986555554444333221110       001222222221111110


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                            .+         .....-......+.+..+++. .++++....-+............+  .............+.
T Consensus        78 ------~l---------~d~~~v~~l~~~~~~~i~~L~-~~Gv~f~~~~~g~~~~~~~g~~s~--~~~~~~~~~~~~~~d  139 (330)
T d1neka2          78 ------YI---------GDQDAIEYMCKTGPEAILELE-HMGLPFSRLDDGRIYQRPFGGQSK--NFGGEQAARTAAAAD  139 (330)
T ss_dssp             ------SC---------SCHHHHHHHHHHHHHHHHHHH-HTTCCCCBCSCBTTBCCCSSBCEE--ECTTSSSEEEECCTT
T ss_pred             ------hc---------cCHHHHHHHHHHhHHHHHHHh-hccccccccCCCceehhccCcccc--cccCcccccccccCC
Confidence                  00         001111222333345566664 566652221111100000000000  000000011111122


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      ..-..++..|.+.+++.+++++.++.+..+..++++ ++.++.+.+..+|+...+.||.||+|||++..
T Consensus       140 ~~G~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~-~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         140 RTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDG-AVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTS-CEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred             ccHHHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccc-cceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence            223567888999999999999999999999887667 88888877767888888999999999999884

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.8e-17  Score=146.20  Aligned_cols=198  Identities=16%  Similarity=0.143  Sum_probs=95.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ  148 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (442)
                      .++|||||||+|++||+||++|++.| +|+||||....+++|..+.|.++.....         .+..+   .++.+...
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~~a~Ggi~a~~~~---------~D~~~---~~~~d~~~   71 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFDE---------TDSID---SHVEDTLI   71 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-------------CCS---------HHHHH---HHHHHHHH
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchHHhCcceEEEECC---------CCCHH---HHHHHhhh
Confidence            45699999999999999999999888 9999999987777776665443221100         00111   11111100


Q ss_pred             HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476          149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ  228 (442)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  228 (442)
                         ....+         ........+.....+..+|+. .++++...........  ...+.. .........++... .
T Consensus        72 ---~~~~~---------~~~~~~~~~~~~~~e~~~~l~-~~g~~f~~~~~~~~~~--~~~~~~-~gg~s~~r~~~~~~-~  134 (305)
T d1chua2          72 ---AGAGI---------CDRHAVEFVASNARSCVQWLI-DQGVLFDTHIQPNGEE--SYHLTR-EGGHSHRRILHAAD-A  134 (305)
T ss_dssp             ---HTTTC---------CCHHHHHHHHHHHHHHHHHHH-HTTCC------------------------------------
T ss_pred             ---cccCc---------ccHHHHHHHHHhcchhhhHHH-hcCCcccccccccccc--chhccc-cCCCccCeEEecCC-C
Confidence               00000         001111122223334455554 3443311111110000  000000 00000000000000 0


Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCC------CCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA------SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD  297 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~------g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~  297 (442)
                      .....+...+.+.+++.+++++.++++++|+.+++      + +|+||.+.+..+++...+.+|.||+|||+++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~-rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~  208 (305)
T d1chua2         135 TGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTR-RVVGAWVWNRNKETVETCHAKAVVLATGGASK  208 (305)
T ss_dssp             ------CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSC-BEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             CCchhHHHHHHHHHhccCcceeceeEEEEEEEEcCcccccCc-eEEEEEEEeCCCCcEEEEeecceEEeeecccc
Confidence            00111222344455667999999999999998752      3 79999998756777778899999999999984

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.64  E-value=5.5e-16  Score=137.12  Aligned_cols=71  Identities=13%  Similarity=0.049  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH----------HHh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD----------SVR  300 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~----------~l~  300 (442)
                      ...+.+.|.+.+++.|++|+++++|++++..++++.+..++..   +  ..+++||.||+|||+.|-          .++
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~---~--~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a  182 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV---N--STQWQCKNLIVATGGLSMPGLGATPFGYQIA  182 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE---T--TEEEEESEEEECCCCSSCGGGTCCSHHHHHH
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec---C--CEEEEeCEEEEcCCcccccccCCCchHHHHH
Confidence            4678889999999999999999999999987766455444332   2  358999999999998652          466


Q ss_pred             hhhCCC
Q 013476          301 KLADQN  306 (442)
Q Consensus       301 ~~~g~~  306 (442)
                      +.+|++
T Consensus       183 ~~~~~~  188 (253)
T d2gqfa1         183 EQFGIP  188 (253)
T ss_dssp             HHTTCC
T ss_pred             Hhcccc
Confidence            666655

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.8e-14  Score=127.98  Aligned_cols=58  Identities=14%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      ..+.+.|.+.++++|++|++|++|++|..++++++|++|+.    +|  .+++||.||. +..|.
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~-~~s~~  293 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT----KL--GTFKAPLVIA-DPTYF  293 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE----TT--EEEECSCEEE-CGGGC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEc----CC--EEEECCEEEE-Chhhc
Confidence            46889999999999999999999999987654448888754    33  4899999775 34443

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.57  E-value=2.6e-14  Score=132.85  Aligned_cols=195  Identities=18%  Similarity=0.133  Sum_probs=102.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHH----CCCeEEEEeccCCCCCCccCCCCcc-cchhhhhHHhhhccCcchHHHHHHH
Q 013476           68 NSNPLDILVIGGGATGCGVALDAAT----RGLRVGLVEREDFSSGTSSRSTKLI-HGGVRYLEKAVFNLDYGQLKLVFHA  142 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~----~G~~V~liEk~~~~~g~s~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  142 (442)
                      ++.++||||||+|++||+||++|++    +|++|+||||....++.+..+++.. ........   .....+..+.+.+.
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~---~~~~~Ds~e~~~~d   94 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTG---RSERQNTLEDYVRY   94 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSS---SBSCCCCHHHHHHH
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhHHHHHHHHHhcccccc---ccCccCCHHHHHHH
Confidence            4567999999999999999999986    6999999999986655544333221 11110000   00011222222222


Q ss_pred             HHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEE
Q 013476          143 LEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAV  222 (442)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  222 (442)
                      ......      .         .............+....+++. ..|++........      +.      ........
T Consensus        95 ~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~l~-~~G~~f~~~~~~~------~~------~~~~~~~~  146 (356)
T d1jnra2          95 VTLDMM------G---------LAREDLVADYARHVDGTVHLFE-KWGLPIWKTPDGK------YV------REGQWQIM  146 (356)
T ss_dssp             HHHHTT------T---------CCCHHHHHHHHHHHHHHHHHHH-HTTCCBCBCTTSC------BC------BSSSSCEE
T ss_pred             HHHhcc------C---------CccHHHHHHHHHhcchhhhhHH-hhCCCcccccccc------cc------ccccceec
Confidence            111110      0         0011111122223334455553 5555421111100      00      00011111


Q ss_pred             EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEc--CCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476          223 VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD--EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS  298 (442)
Q Consensus       223 ~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~--~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~  298 (442)
                      .....    ..............+.+++..+.+..+...  +.+ .+.++.+.+..+|+...|+||.||+|||+++..
T Consensus       147 ~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~-~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~  219 (356)
T d1jnra2         147 IHGES----YKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPN-AVAGAVGFSVREPKFYVFKAKAVILATGGATLL  219 (356)
T ss_dssp             EEETT----HHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTT-BEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             ccccc----HHHHHHHHHHhhhcceEEEEEEEEEEeeeeccccc-ceeeeEEEEeecCcEEEeeCCEEEEcCCCcccc
Confidence            11111    112223333344567788888888888753  234 788888877678888889999999999999853

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.51  E-value=2.5e-14  Score=127.03  Aligned_cols=51  Identities=24%  Similarity=0.289  Sum_probs=45.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchh
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV  121 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~  121 (442)
                      +.+|||||||++||++|++|+++|++|+||||..+++++|..+.+.+.++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~s~~~~~~~~~~~   56 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGAN   56 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGCCCB
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhhhhhhcccc
Confidence            458999999999999999999999999999999888888888888776543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.35  E-value=3.3e-12  Score=118.91  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=46.5

Q ss_pred             HHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCc---eEEEEcCEEEEccCC-ChHHHhhhh
Q 013476          237 GLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGK---EFDTYAKVVVNAAGP-FCDSVRKLA  303 (442)
Q Consensus       237 ~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~---~~~i~a~~VVlAtG~-~s~~l~~~~  303 (442)
                      .++..+++.| ++|+.+++|++|+.++++-..++|+..+ .++.   ..++.||.||+|+|. .|+.|+-..
T Consensus       223 ~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~-~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         223 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKD-TDGKLLATKEISCRYLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEEC-TTCCEEEEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred             hhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEEC-CCCcceeEEEEecCEEEEecchhcCHHHHHhC
Confidence            3455566676 9999999999999886542455555543 2222   346899999999998 567777544

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.35  E-value=7.2e-13  Score=122.90  Aligned_cols=70  Identities=13%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCC--CceEEEEc-CEEEEccCC-ChHHHhhhhCCC
Q 013476          235 NVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLS--GKEFDTYA-KVVVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       235 ~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~--g~~~~i~a-~~VVlAtG~-~s~~l~~~~g~~  306 (442)
                      ...++..+.++ +++|+.++.|++|..++ + +++||++.+...  +...++.| +.||||+|. .|+.|+...|+.
T Consensus       193 ~~~yl~~a~~r~nl~i~t~~~V~rI~~d~-~-ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIG  267 (360)
T d1kdga1         193 VATYLQTALARPNFTFKTNVMVSNVVRNG-S-QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  267 (360)
T ss_dssp             HHTHHHHHHTCTTEEEECSCCEEEEEEET-T-EEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             cchhhhhhhcccccccccCcEEEEEEEeC-C-EEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCC
Confidence            34445555554 68999999999999987 5 999999864221  23345666 559999997 578888887765

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.34  E-value=2.9e-12  Score=119.94  Aligned_cols=68  Identities=21%  Similarity=0.266  Sum_probs=52.6

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcCCCC--eEEEEEEEECCCCceEEEEcCE-EEEccCC-ChHHHhhhhCCC
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDEASN--RIIGARIRNNLSGKEFDTYAKV-VVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~--~v~gV~~~~~~~g~~~~i~a~~-VVlAtG~-~s~~l~~~~g~~  306 (442)
                      +...++..+++|+.++.|++|..++++.  +++||++.+ .+|+..+++|+. ||||+|. .|+.|+...|+.
T Consensus       231 ~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~-~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIG  302 (385)
T d1cf3a1         231 LLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT-HKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIG  302 (385)
T ss_dssp             TGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE-ETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBS
T ss_pred             cCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEc-CCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCC
Confidence            3334455689999999999998775432  799999875 467777899976 9999998 578888887765

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.34  E-value=4.3e-12  Score=118.29  Aligned_cols=36  Identities=31%  Similarity=0.459  Sum_probs=33.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +-..+||||||+|.+|+.+|++|+++|++|+|||++
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            345699999999999999999999999999999997

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=7e-12  Score=106.02  Aligned_cols=33  Identities=33%  Similarity=0.680  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|||||||||.+|+.||+++|+.|+||+||+++
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            499999999999999999999999999999987

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=1.7e-13  Score=120.07  Aligned_cols=80  Identities=11%  Similarity=0.076  Sum_probs=57.7

Q ss_pred             CceeEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          217 SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .....+.+..+.++|..++.+|.+.++++|++|+.. +++++..-                   ....+|.||+|||.++
T Consensus       127 ~~~~~~~~~~~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~~~-------------------~~~~~d~vVnctG~~a  186 (246)
T d1kifa1         127 DYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLR-KVESFEEV-------------------ARGGADVIINCTGVWA  186 (246)
T ss_dssp             TCCEEEEEEEEEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHHHH-------------------HHTTCSEEEECCGGGH
T ss_pred             ccceEEEccceEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHHHh-------------------ccCCCCEEEECCcccc
Confidence            344566677889999999999999999999998643 34333211                   1234689999999999


Q ss_pred             HHHhhhhCCCCCCcccCCCeeEEEeC
Q 013476          297 DSVRKLADQNVQPMICPSSGVHIVLP  322 (442)
Q Consensus       297 ~~l~~~~g~~~~~~~~~~~g~~~~~~  322 (442)
                      ..+..      +.+.+|.+++.+...
T Consensus       187 ~~l~~------d~~~~~~r~~~lr~~  206 (246)
T d1kifa1         187 GVLQP------DPLQVRLEREQLRFG  206 (246)
T ss_dssp             HHHSC------CTTSCEEEEEEEESS
T ss_pred             cccCC------CCCeeccceEEEeeC
Confidence            87765      235677788776553

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.30  E-value=3.8e-12  Score=118.84  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhhhCCC
Q 013476          244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQN  306 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~~g~~  306 (442)
                      +.|++|+.++.|++|..++++.+++||++.+..+++..+++||.||+|+|.. ++.|+...++.
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~  293 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG  293 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSS
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccc
Confidence            4579999999999999875443899999988667887889999999999994 56777666654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.29  E-value=3.2e-12  Score=119.73  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             HHHHHHcCceEecCeEEEEEEEcC--CCCeEEEEEEEECCCCceEEEEcCE-EEEccCC-ChHHHhhhhCCC
Q 013476          239 ALTAALAGAAVLNHAEVISLIKDE--ASNRIIGARIRNNLSGKEFDTYAKV-VVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       239 ~~~~~~~Gv~i~~~~~v~~l~~~~--~g~~v~gV~~~~~~~g~~~~i~a~~-VVlAtG~-~s~~l~~~~g~~  306 (442)
                      .....+.+++|+.++.|++|..++  +|-+++||++.+ .++...+++|+. ||||+|. .|+.|+...|+.
T Consensus       238 ~p~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~-~~g~~~~v~A~keVILaAGai~SP~LLl~SGIG  308 (391)
T d1gpea1         238 LPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGT-NKAVNFDVFAKHEVLLAAGSAISPLILEYSGIG  308 (391)
T ss_dssp             TTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEE-ETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEE
T ss_pred             CccccchhhhhhccceeeEEeeeCCCCCceEEeeEEec-CCCeEEEEEeCCEEEEecchhcchHHHHhcCCC
Confidence            334445689999999999997642  222799999875 456666889976 9999998 578888877764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.28  E-value=6.1e-12  Score=114.26  Aligned_cols=35  Identities=31%  Similarity=0.564  Sum_probs=32.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      ||+|||||++||+||++|+++|++|+||||++ +++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG   37 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG   37 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCc
Confidence            89999999999999999999999999999997 443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.27  E-value=1e-11  Score=111.67  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      +....+...|.+.+++.+..+.++...+.....++. .+ .|...+  +|+..+++||.||.|+|.+| .+.+.+
T Consensus       100 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~--~g~~~~i~a~~vVgADG~~S-~vR~~i  169 (292)
T d1k0ia1         100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGE-RP-YVTFER--DGERLRLDCDYIAGCDGFHG-ISRQSI  169 (292)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSS-SC-EEEEEE--TTEEEEEECSEEEECCCTTC-STGGGS
T ss_pred             ecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccC-ce-EEEEec--CCcEEEEEeCEEEECCCCCC-ccccee
Confidence            344667888888888888877777776666554433 33 355543  56666899999999999998 455543

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.22  E-value=8.9e-12  Score=90.85  Aligned_cols=93  Identities=12%  Similarity=0.093  Sum_probs=71.5

Q ss_pred             ccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCC
Q 013476          311 ICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR  390 (442)
Q Consensus       311 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  390 (442)
                      +.|+|||++.++............+....+...|++|+.+++++|++.+.  ...+..++++.+++|++.+.+++ |.+.
T Consensus         1 i~PvrGQil~v~~P~~~~~~~~~~~~~~~~~~~yivpr~~~~viG~T~e~--~~~d~~~~~~~~~~i~~~a~~~~-P~l~   77 (93)
T d1kifa2           1 LQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQV--GNWNEINNIQDHNTIWEGCCRLE-PTLK   77 (93)
T ss_dssp             CEEEEEEEEEEECTTCCSEEEEECTTTCTTCSCEEEECSSSEEEECCCEE--TCCCCSCCHHHHHHHHHHHHHHS-GGGG
T ss_pred             CccccceEEEEcCCCCccceeeccccccCCCceEEEECCCCEEEEEEeec--CCCCCCCCHHHHHHHHHHHHHHH-hhhc
Confidence            46899999988753211111111111233455899999888999999876  34577899999999999999999 9999


Q ss_pred             CCCeeeeeeecccccc
Q 013476          391 RTDVLSAWSGIRPLAM  406 (442)
Q Consensus       391 ~~~~~~~~~G~r~~t~  406 (442)
                      +.++.+.|+|+||++|
T Consensus        78 ~~~i~~~~~GlRP~rP   93 (93)
T d1kifa2          78 DAKIVGEYTGFRPVRP   93 (93)
T ss_dssp             GCEEEEEEEEEEEECS
T ss_pred             CCCeeeEEEeecCCCC
Confidence            9999999999999987

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.22  E-value=5.5e-11  Score=106.45  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCc--eEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476          232 SRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV  299 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l  299 (442)
                      ..+...|.+.+++.++  .|+++|+|+++..+++. ...-|++   .++  ..++||.||+|||..+...
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~-~~W~V~~---~~~--~~~~~~~~i~atG~ls~~~  148 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEAT-NTWTVDT---NHG--DRIRARYLIMASGQLSDAL  148 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTT-TEEEEEE---TTC--CEEEEEEEEECCCSCCCCT
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEEecCC-Cceeecc---ccc--cccccceEEEeeccccccc
Confidence            4567777888888887  59999999999865533 2333444   233  4789999999999877543

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.19  E-value=1.4e-11  Score=113.53  Aligned_cols=68  Identities=21%  Similarity=0.113  Sum_probs=49.7

Q ss_pred             HHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCce--EEEEcC-EEEEccCC-ChHHHhhhhCCC
Q 013476          238 LALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKE--FDTYAK-VVVNAAGP-FCDSVRKLADQN  306 (442)
Q Consensus       238 l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~--~~i~a~-~VVlAtG~-~s~~l~~~~g~~  306 (442)
                      ++..+.+.+++|+.++.|++|..++ .+.+++||++.+ .++..  ..++|+ .||||+|+ .|+.|+...|+.
T Consensus       200 ~l~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~-~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGIG  272 (351)
T d1ju2a1         200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD-SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVG  272 (351)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEEC-TTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEE
T ss_pred             hhccchhhhhhhhccchhhceeeeccccceeeEEEEEe-CCCceEEEEeecCcEEEEeCccccCHHHHHHcCCC
Confidence            3444566799999999999998764 233899999976 34433  346674 59999998 577888877764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.19  E-value=7.8e-11  Score=108.30  Aligned_cols=39  Identities=28%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      +...+|+|||||++||+||++|+++|++|+|||+++..+
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            344689999999999999999999999999999987433

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.11  E-value=7.8e-11  Score=84.70  Aligned_cols=87  Identities=20%  Similarity=0.304  Sum_probs=69.3

Q ss_pred             ccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCC
Q 013476          311 ICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKV  389 (442)
Q Consensus       311 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  389 (442)
                      ++|+||+++.+.....+... .++.   +  ..|++|+. |.+++|++.+.  ...+..++++.++++++.+.+++ |.+
T Consensus         1 l~PvKGq~l~v~~~~~~~~~-~i~~---~--~~yiip~~~g~~~iG~T~e~--~~~d~~~~~~~~~~l~~~a~~~~-P~l   71 (88)
T d1ryia2           1 FLPVKGECLSVWNDDIPLTK-TLYH---D--HCYIVPRKSGRLVVGATMKP--GDWSETPDLGGLESVMKKAKTML-PAI   71 (88)
T ss_dssp             CEEEEEEEEEEECCSSCCCS-EEEE---T--TEEEEECTTSEEEEECCCEE--TCCCCSCCHHHHHHHHHHHHHHC-GGG
T ss_pred             CCCCCcEEEEEECCCCccCC-EEeC---C--CEEEEECCCCCEEEccEEEE--CCCCCCCCHHHHHHHHHHHHHHC-CCc
Confidence            47999999988765443222 2222   2  27889975 57889999987  45688899999999999999999 899


Q ss_pred             CCCCeeeeeeecccccc
Q 013476          390 RRTDVLSAWSGIRPLAM  406 (442)
Q Consensus       390 ~~~~~~~~~~G~r~~t~  406 (442)
                      .+.++.++|+|+||.|.
T Consensus        72 ~~~~v~~~waGlRP~t~   88 (88)
T d1ryia2          72 QNMKVDRFWAGLRPGTK   88 (88)
T ss_dssp             GGSEEEEEEEEEEEECS
T ss_pred             CCCcEeEEEEeeCCCCC
Confidence            99999999999999973

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.10  E-value=2.8e-10  Score=104.15  Aligned_cols=63  Identities=11%  Similarity=0.041  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCc-eEEEEcCEEEEccCCCh
Q 013476          231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK-EFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~-~~~i~a~~VVlAtG~~s  296 (442)
                      ...+.+.|...++..+..|+++++|++++.+++.|+   |++++..+++ .....+|+||+|+|.++
T Consensus       112 ~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~---Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         112 RHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWV---VTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEE---EEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             hHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEE---EEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            356677777778778889999999999999886544   4555433433 34567999999999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.3e-11  Score=108.84  Aligned_cols=35  Identities=34%  Similarity=0.578  Sum_probs=32.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      ||+|||||++||+||++|+++|++|+||||+. +++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc
Confidence            89999999999999999999999999999987 444

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.08  E-value=1.3e-09  Score=84.64  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=41.4

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      ..+.+.++++|+++++++.++++....++.+++.|.+   .+|+  ++.||.||+|+|
T Consensus        81 ~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~---~~G~--~i~~D~vi~a~G  133 (133)
T d1q1ra2          81 AFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLC---EDGT--RLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEE---TTSC--EEECSEEEECCC
T ss_pred             hhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEEC---CCCC--EEECCEEEEeeC
Confidence            3445566789999999999999987643337877777   3454  799999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.5e-09  Score=82.24  Aligned_cols=53  Identities=13%  Similarity=0.221  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      +.+.+.+.++++|+++++++.++++..++++ .++ |..   .+|+  ++.+|.||+|+|
T Consensus        64 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~-~~~-v~~---~~g~--~~~~D~vi~a~G  116 (116)
T d1gesa2          64 ISETLVEVMNAEGPQLHTNAIPKAVVKNTDG-SLT-LEL---EDGR--SETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEECTTS-CEE-EEE---TTSC--EEEESEEEECSC
T ss_pred             hHHHHHHHHHHCCCEEEeCCEEEEEEEcCCc-EEE-EEE---CCCC--EEEcCEEEEecC
Confidence            3345667778899999999999999988765 553 444   3454  789999999998

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.06  E-value=8.1e-10  Score=98.26  Aligned_cols=55  Identities=27%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476          244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA  303 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~  303 (442)
                      ..++++.++++++.+..+++  +++ |++.+ .++...++.||.||.|.|.+| .+.+..
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~--~v~-v~~~~-g~~~~~~~~ad~vi~ADG~~S-~vr~~~  172 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDG--RVL-IGARD-GHGKPQALGADVLVGADGIHS-AVRAHL  172 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETT--EEE-EEEEE-TTSCEEEEEESEEEECCCTTC-HHHHHH
T ss_pred             ccCeeeecCcEEEEeeecCC--cEE-EEEEc-CCCCeEEEeeceeeccCCccc-eeeeee
Confidence            35889999999999998875  553 56666 566667899999999999998 455544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.05  E-value=8.2e-10  Score=97.22  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||||++||++|+.|+++|++|+||||.+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3579999999999999999999999999999975

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=4.5e-09  Score=80.26  Aligned_cols=57  Identities=14%  Similarity=0.148  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEc
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA  291 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlA  291 (442)
                      +...+.+.++++|++|+++++++++..++++ ....++..+..+++..++.||.|++|
T Consensus        66 i~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          66 VAKATQKFLKKQGLDFKLSTKVISAKRNDDK-NVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTT-TEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHhccceEEeCCEEEEEEEeCCC-cEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            3445667778899999999999999988766 56566776645667778999999987

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.02  E-value=6.1e-09  Score=79.66  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=44.3

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      ..+.+.++++|+++++++.+++++.++++ ++..+....  .+...++.||.||+|+|
T Consensus        67 ~~~~~~l~~~gI~v~~~~~v~~i~~~~~~-~~~~~~~~~--~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          67 AYVLDRMKEQGMEIISGSNVTRIEEDANG-RVQAVVAMT--PNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHTTCEEESSCEEEEEEECTTS-BEEEEEEEE--TTEEEEEECSCEEECCC
T ss_pred             hhhhhhhhccccEEEcCCEEEEEEecCCc-eEEEEEEEe--CCCCEEEEcCEEEEEEC
Confidence            34555667889999999999999998877 777666654  44557899999999998

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=4.5e-09  Score=93.14  Aligned_cols=36  Identities=22%  Similarity=0.508  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC-CCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR-GLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk~~  104 (442)
                      ..++||+|||||++||++|++||++ |++|+||||++
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4679999999999999999999985 99999999986

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.01  E-value=6.8e-09  Score=78.87  Aligned_cols=55  Identities=13%  Similarity=0.086  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      +...+.+.++++|++|++++++++++.++++  ++ |++.+  .+...++.||.|++|+|
T Consensus        65 i~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--v~-v~~~~--~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          65 VAKEAQKILTKQGLKILLGARVTGTEVKNKQ--VT-VKFVD--AEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHHTTEEEEETCEEEEEEECSSC--EE-EEEES--SSEEEEEEESEEEECSC
T ss_pred             hHHHHHHHHHhcCceeecCcEEEEEEEeCCE--EE-EEEEE--CCCCEEEECCEEEEeeC
Confidence            3445666778899999999999999988754  32 44543  33456899999999998

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.93  E-value=2.1e-09  Score=94.26  Aligned_cols=35  Identities=40%  Similarity=0.674  Sum_probs=33.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      |||+|||||++|+++|.+|++.|++|+|||+..++
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~G   36 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLG   36 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            89999999999999999999999999999997653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.92  E-value=9e-09  Score=78.68  Aligned_cols=56  Identities=13%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEcc
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA  292 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAt  292 (442)
                      +...+.+.++++|++|++++.+.+++.++++ ..  |.++...+|+...+.||.|++|+
T Consensus        68 ~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~-~~--v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          68 IRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG-VK--LTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHSSCCEECSEEEEEEECSSSS-EE--EEEEESSSCCCEEEEESEEECCC
T ss_pred             chhhhhhhhhcccceEEcCCceEEEEEccCe-EE--EEEEECCCCeEEEEEcCEEEEcC
Confidence            3445667778899999999999999988765 33  34444346666789999999985

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=1.4e-08  Score=87.40  Aligned_cols=38  Identities=26%  Similarity=0.417  Sum_probs=34.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS  107 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~  107 (442)
                      .+|||+|||||++|++||++|++.|++|+|||+...++
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            46999999999999999999999999999999986443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.89  E-value=2.5e-08  Score=75.56  Aligned_cols=52  Identities=13%  Similarity=0.069  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEc
Q 013476          235 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA  291 (442)
Q Consensus       235 ~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlA  291 (442)
                      ...+.+.++++|++|++++.++++..+++  .++ |.+.  .+|+..++.||.||+.
T Consensus        66 ~~~l~~~l~~~GI~i~~~~~v~~i~~~~~--~~~-v~~~--~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          66 AAIIKKRLKKKGVEVVTNALAKGAEERED--GVT-VTYE--ANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEEETT--EEE-EEEE--ETTEEEEEEESEEEEC
T ss_pred             HHHHHHHHHhcCCEEEcCCEEEEEEEcCC--EEE-EEEE--eCCCEEEEEeEEEEEC
Confidence            34566777889999999999999998875  332 4444  3566678999999873

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=2.7e-09  Score=98.77  Aligned_cols=67  Identities=18%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCCc-------eEEEEcCEEEEccCCCh
Q 013476          229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGK-------EFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g~-------~~~i~a~~VVlAtG~~s  296 (442)
                      +....+...+.+.+++.|+++.....+..+..++++ .+.++.....   ..+.       .....++.+|++.|...
T Consensus       138 ~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G  214 (380)
T d2gmha1         138 VRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDG-SVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  214 (380)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTS-SEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             ehhhHHHHHHHHHHhhccceeeeecceeeeeeccCC-ceeecccccccccccccccccccccccccccEEEEeeeCCC
Confidence            344678899999999999999999999999998777 6665543210   1111       12457889999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.8e-08  Score=76.10  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||||..|+-.|..|++.|.+|+|+|+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            579999999999999999999999999999974

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.88  E-value=2.2e-09  Score=78.12  Aligned_cols=86  Identities=16%  Similarity=0.187  Sum_probs=67.0

Q ss_pred             cCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCC-
Q 013476          312 CPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKV-  389 (442)
Q Consensus       312 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  389 (442)
                      .|+|||++.++...   ....+.. ..++...|++|+ +|.+++|++.+.  ...+..++++..+++++.+.+++ |.| 
T Consensus         2 ~PvRGQ~~~v~~p~---~~~~~~~-~~~~~~~Yiipr~~g~vviG~T~e~--~~~d~~~~~~~~~~il~~a~~~~-P~L~   74 (95)
T d1c0pa2           2 EPIRGQTVLVKSPC---KRCTMDS-SDPASPAYIIPRPGGEVICGGTYGV--GDWDLSVNPETVQRILKHCLRLD-PTIS   74 (95)
T ss_dssp             EEEEEEEEEEECCC---CCCEEEC-SCTTCCEEEEEETTTEEEEECCCEE--TCCCCSCCHHHHHHHHHHHHHHC-GGGS
T ss_pred             CCcceEEEEEeCCC---CcccEEE-ecCCCeEEEEECCCCEEEEEEEEEE--CCCcCCCCHHHHHHHHHHHHHhC-cccc
Confidence            58899999887532   2222222 445667899998 578999999986  34578999999999999999999 777 


Q ss_pred             -----CCCCeeeeeeecccc
Q 013476          390 -----RRTDVLSAWSGIRPL  404 (442)
Q Consensus       390 -----~~~~~~~~~~G~r~~  404 (442)
                           ...++...|+|+||.
T Consensus        75 ~~~~~~~~~v~~~~~GlRP~   94 (95)
T d1c0pa2          75 SDGTIEGIEVLRHNVGLRPA   94 (95)
T ss_dssp             SSSSGGGCEEEEEEEEEEEE
T ss_pred             ccccccCccEEEeEEEeCCC
Confidence                 356799999999995

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.84  E-value=1.3e-08  Score=77.80  Aligned_cols=56  Identities=11%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      +...+.+.++++|+++++++++.+++.+++|  +. |.+++ .+++...+.||.|++|+|
T Consensus        69 ~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g--~~-v~~~~-~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          69 LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--VY-VTFEG-ANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHGGGEEEEECSCEEEEEEEETTE--EE-EEEES-SSCCSSCEEESCEEECCC
T ss_pred             HHHHHHHHHHHcCcccccCcEEEEEEEcCCc--EE-EEEEe-CCCCeEEEEcCEEEEecC
Confidence            3445667778899999999999999988754  32 55554 444445799999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.83  E-value=1.8e-08  Score=76.07  Aligned_cols=33  Identities=27%  Similarity=0.537  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.++|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            579999999999999999999999999999964

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=2.9e-09  Score=88.79  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++..+||+|||||++|++||++|++.|++|+|+|+..
T Consensus         2 ~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           2 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            3566899999999999999999999999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=9.5e-08  Score=72.61  Aligned_cols=60  Identities=12%  Similarity=0.085  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCC-eEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASN-RIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~-~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      +...+.+.++++|++|++++.++++...+++. ....+......+++...+.+|.|++|+|
T Consensus        62 ~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          62 MANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            34466677788999999999999997643220 2334555542334445678899999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.80  E-value=2.7e-08  Score=75.58  Aligned_cols=34  Identities=38%  Similarity=0.641  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||||++|+-+|..|+++|.+|+|+|+.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            3689999999999999999999999999999974

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=1.7e-08  Score=83.88  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ++..||+|||||++||.||++|++.|++|+|||+...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            4568999999999999999999999999999998753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.76  E-value=8.1e-08  Score=72.62  Aligned_cols=53  Identities=23%  Similarity=0.200  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      +...+.+.++++|+++++++.++++..++++ . ..|..   .+|+  .+.||.||+|+|
T Consensus        64 ~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g-~-~~v~~---~~g~--~i~~D~Vi~a~G  116 (117)
T d1feca2          64 LRKQLTEQLRANGINVRTHENPAKVTKNADG-T-RHVVF---ESGA--EADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHTTEEEEETCCEEEEEECTTS-C-EEEEE---TTSC--EEEESEEEECSC
T ss_pred             hhHHHHHHHhhCcEEEEcCCEEEEEEECCCC-E-EEEEE---CCCC--EEEcCEEEEecC
Confidence            3445667778899999999999999987765 3 34555   3454  789999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.75  E-value=1.4e-07  Score=71.04  Aligned_cols=33  Identities=15%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            469999999999999999999999999999864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.74  E-value=3.8e-09  Score=90.59  Aligned_cols=36  Identities=33%  Similarity=0.581  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ++|||+|||||++|++||++|++.|++|+|||+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            579999999999999999999999999999999753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.73  E-value=4.5e-09  Score=89.71  Aligned_cols=36  Identities=31%  Similarity=0.574  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .+|||+|||||++|+++|++|++.|++|+|||+...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            469999999999999999999999999999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.71  E-value=7.3e-08  Score=73.46  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..-.|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            34589999999999999999999999999999964

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.8e-09  Score=90.83  Aligned_cols=37  Identities=30%  Similarity=0.526  Sum_probs=34.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      ++|||||||||++|+++|..|++.|++|+|||++.++
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~G   37 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELG   37 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence            4699999999999999999999999999999997654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.7e-09  Score=96.21  Aligned_cols=40  Identities=25%  Similarity=0.465  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      ..+..+|||||||++||+||+.|+++|++|+|+|+++ +++
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            3556889999999999999999999999999999997 444

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.69  E-value=5.3e-08  Score=74.22  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            589999999999999999999999999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.4e-07  Score=73.42  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          235 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       235 ~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      ...+.+.++++|+++++++.|.++..+++  ++. |.+   .+|+  ++.||.||+|+|
T Consensus        86 ~~~~~~~l~~~GV~~~~~~~V~~i~~~~~--~~~-v~l---~~G~--~i~aD~Vi~A~G  136 (137)
T d1m6ia2          86 SNWTMEKVRREGVKVMPNAIVQSVGVSSG--KLL-IKL---KDGR--KVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHTTTCEEECSCCEEEEEEETT--EEE-EEE---TTSC--EEEESEEEECCC
T ss_pred             HHHHHHHHHhCCcEEEeCCEEEEEEecCC--EEE-EEE---CCCC--EEECCEEEEeec
Confidence            34556677889999999999999988763  442 444   3454  899999999998

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.65  E-value=5e-09  Score=90.01  Aligned_cols=36  Identities=42%  Similarity=0.715  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .+|||+|||||++||+||.+|++.|++|+|||+...
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            459999999999999999999999999999999863

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.65  E-value=5.8e-09  Score=89.02  Aligned_cols=39  Identities=31%  Similarity=0.499  Sum_probs=35.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      ++.++|+||||||++|+.+|..|++.|++|+|||++.++
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~G   40 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALG   40 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTT
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            467799999999999999999999999999999998654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.63  E-value=1.1e-08  Score=90.76  Aligned_cols=36  Identities=22%  Similarity=0.464  Sum_probs=32.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC-CCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED-FSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~-~~~  107 (442)
                      +||+|||||++||+||++|+++|. +|+||||++ +++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCc
Confidence            589999999999999999999996 699999986 443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=6.7e-09  Score=92.87  Aligned_cols=38  Identities=18%  Similarity=0.370  Sum_probs=34.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGT  109 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~  109 (442)
                      +||||||||++||++|++|++.|++|+||||.. +||.+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccce
Confidence            799999999999999999999999999999997 55543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.7e-08  Score=82.13  Aligned_cols=37  Identities=30%  Similarity=0.513  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      ....+|+|||||++||+||+.|+++|++|+|+|+.+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            3457899999999999999999999999999999863

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=6.9e-09  Score=89.26  Aligned_cols=35  Identities=34%  Similarity=0.629  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|||+|||||++|++||.+|++.|++|+|||+..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            46999999999999999999999999999999975

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.61  E-value=1.1e-08  Score=87.28  Aligned_cols=36  Identities=33%  Similarity=0.560  Sum_probs=34.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      +|||||||||++|+++|.+|++.|++|+|||+..++
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~G   38 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLG   38 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence            599999999999999999999999999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.57  E-value=8e-07  Score=66.87  Aligned_cols=51  Identities=18%  Similarity=0.145  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEc
Q 013476          234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA  291 (442)
Q Consensus       234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlA  291 (442)
                      +...+.+.++++|+++++++++++++.++++ +++ |.+   .+|+  ++.||.||+|
T Consensus        66 ~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~-~~~-v~~---~~G~--~i~~D~Vi~A  116 (117)
T d1aoga2          66 LREELTKQLTANGIQILTKENPAKVELNADG-SKS-VTF---ESGK--KMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEECTTS-CEE-EEE---TTSC--EEEESEEEEC
T ss_pred             HHHHHHHHHHhcCcEEEcCCEEEEEEEcCCC-eEE-EEE---CCCc--EEEeCEEEEe
Confidence            3345667778899999999999999987665 543 554   3454  7899999987

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2e-08  Score=85.63  Aligned_cols=36  Identities=42%  Similarity=0.604  Sum_probs=33.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS  106 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~  106 (442)
                      +|||||||||++|+++|.+|++.|++|+|||+...+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~G   38 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLG   38 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence            599999999999999999999999999999997654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=8e-07  Score=76.00  Aligned_cols=36  Identities=31%  Similarity=0.537  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC---CeEEEEeccCCCC
Q 013476           72 LDILVIGGGATGCGVALDAATRG---LRVGLVEREDFSS  107 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G---~~V~liEk~~~~~  107 (442)
                      .+|+|||+|++|++||+++++.|   ++|+|||+..+++
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG   40 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGG   40 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCc
Confidence            58999999999999999998865   6799999976543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=3.2e-08  Score=81.60  Aligned_cols=32  Identities=34%  Similarity=0.780  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |||+|||||++|++||++|++.|++|+|||+.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            89999999999999999999999999999985

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.46  E-value=4.9e-08  Score=88.02  Aligned_cols=35  Identities=31%  Similarity=0.492  Sum_probs=32.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSS  107 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~  107 (442)
                      .|+|||||++||+||++|+++|++|+||||++ +++
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            59999999999999999999999999999987 443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.44  E-value=4.1e-07  Score=75.75  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=40.8

Q ss_pred             HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      +.++++|++++++++|+++..+++  .   |++++..+|+...+.+|.+|+|+|...
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~~~--~---v~~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPKEH--Q---VTVKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTT--E---EEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCcEEEEeeceeeEeeccc--c---ceeeecccccccccccceeeEeeccee
Confidence            344568999999999999988764  3   455554677777899999999999754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.39  E-value=1.1e-07  Score=85.37  Aligned_cols=37  Identities=24%  Similarity=0.550  Sum_probs=33.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSG  108 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g  108 (442)
                      -.|+|||||++||++|+.|++.|++|+|+||++ ++|.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            569999999999999999999999999999997 5543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.35  E-value=1.3e-07  Score=81.53  Aligned_cols=38  Identities=29%  Similarity=0.493  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS  106 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~~  106 (442)
                      +++|||||||+|++|++||++|++.|. +|+|+|+....
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            367999999999999999999999986 59999998643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.33  E-value=2.5e-07  Score=80.79  Aligned_cols=38  Identities=32%  Similarity=0.376  Sum_probs=35.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476           68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF  105 (442)
Q Consensus        68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~  105 (442)
                      .+++|||||||+|.+|+.+|+.|++.|.+|+|||+...
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~   76 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   76 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCc
Confidence            46789999999999999999999999999999999763

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.30  E-value=3.7e-07  Score=78.31  Aligned_cols=37  Identities=35%  Similarity=0.479  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ++.|||+|||+|++|+++|.+|++.|. +|+|+|+...
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            357999999999999999999999886 5999998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.30  E-value=2.6e-07  Score=76.76  Aligned_cols=34  Identities=21%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe-EEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR-VGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~~  105 (442)
                      -.|+|||||++||+||++|+++|++ |+|+||.+.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            5799999999999999999999995 999999863

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.28  E-value=4e-07  Score=77.91  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ....+|+|||||++|+++|.+|+++|++|+|+|+.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            455899999999999999999999999999999986

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.27  E-value=1.9e-07  Score=85.33  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHH-----HCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAA-----TRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La-----~~G~~V~liEk~~  104 (442)
                      .|||+|||||++||++|..|+     ++|++|+||||.+
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            499999999999999999997     4799999999985

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=3.5e-07  Score=82.02  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDF  105 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~  105 (442)
                      ..++||+|||+|++||+||++|+++  |++|+|+|++..
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            4568999999999999999999975  999999999863

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=2.5e-07  Score=79.42  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-------CeEEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATRG-------LRVGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G-------~~V~liEk~~~  105 (442)
                      +.|+|||||++||+||++|+++|       ++|+|+||.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            68999999999999999999988       58999999864

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.15  E-value=2e-06  Score=69.17  Aligned_cols=54  Identities=11%  Similarity=0.032  Sum_probs=39.0

Q ss_pred             HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476          242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN  306 (442)
Q Consensus       242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~  306 (442)
                      .++.++++++++.++.+..+.   ++   ...   ++  .++.+|.+|+|+|.-...+.+..|+.
T Consensus        62 ~~~~~v~~~~~~~v~~i~~~~---~~---~~~---~~--~~i~~D~li~a~G~~~~~~~~~~gl~  115 (167)
T d1xhca1          62 YRKRGIEIRLAEEAKLIDRGR---KV---VIT---EK--GEVPYDTLVLATGAPNVDLARRSGIH  115 (167)
T ss_dssp             HHHHTEEEECSCCEEEEETTT---TE---EEE---SS--CEEECSEEEECCCEECCHHHHHTTCC
T ss_pred             HHhccceeeeecccccccccc---cc---ccc---cc--cccccceeEEEEEecCCchhhhcCce
Confidence            345789999999999886543   33   222   33  36899999999998766777776654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=1.1e-06  Score=75.03  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATR--GLRVGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~  105 (442)
                      +.|+|||||++||+||.+|+++  |++|+|+|+.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            5799999999999999999875  789999999863

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.8e-07  Score=77.69  Aligned_cols=56  Identities=18%  Similarity=0.170  Sum_probs=40.1

Q ss_pred             HHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH--HHhhhhCCC
Q 013476          241 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD--SVRKLADQN  306 (442)
Q Consensus       241 ~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~--~l~~~~g~~  306 (442)
                      .++++|++++++++|++|..+++  +   |++   .+|+  ++.+|.||+|+|+-.+  .+....|+.
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~--~---V~l---~dG~--~i~~d~lViAtG~~~~~~~l~~~~gl~  149 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDN--M---VKL---NDGS--QITYEKCLIATGGTEPNVELAKTGGLE  149 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGT--E---EEE---TTSC--EEEEEEEEECCCEEEECCTTHHHHTCC
T ss_pred             HHHHCCeEEEeCCEEEEeeccCc--e---eee---ccce--eeccceEEEeeeeecchhhhhhccchh
Confidence            34568999999999999987663  3   344   3554  7899999999997443  344555544

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=0.00019  Score=54.03  Aligned_cols=46  Identities=15%  Similarity=0.304  Sum_probs=40.5

Q ss_pred             CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       246 Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      ++++++++++.++.-+++  .+++|++++..+|+..++.+|.|.++-|
T Consensus        80 ~I~v~~~~~v~~i~G~~~--~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          80 NVDIILNAQTTEVKGDGS--KVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             TEEEESSEEEEEEEESSS--SEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ceeEEcCcceEEEEcccc--ceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            589999999999988763  7999999987788888999999999877

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=0.00032  Score=52.75  Aligned_cols=49  Identities=12%  Similarity=0.156  Sum_probs=38.9

Q ss_pred             HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCce-EEEEcCEEEEccC
Q 013476          243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE-FDTYAKVVVNAAG  293 (442)
Q Consensus       243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~-~~i~a~~VVlAtG  293 (442)
                      +..++.+++++.+.+|.-++ . ++++|++++..+++. .++.+|.|+++-|
T Consensus        77 ~~~~i~~~~~~~v~~i~G~~-~-~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          77 ENGNIILHTNRTLEEVTGDQ-M-GVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HTSSEEEECSCEEEEEEECS-S-SEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             cccceeEecceEEEEEECCC-C-ceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            44578899999999999876 3 799999987545443 5799999999876

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.68  E-value=0.00048  Score=53.64  Aligned_cols=33  Identities=36%  Similarity=0.418  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR-VGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~  104 (442)
                      -.|||||||.+|+=+|..|.+.|++ |+++.+.+
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            4699999999999999999999975 88988754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.53  E-value=0.0017  Score=48.76  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=38.3

Q ss_pred             CceEecCeEEEEEEEcCC-CCeEEEEEEEECCCCceEEEEcCEEEEc
Q 013476          246 GAAVLNHAEVISLIKDEA-SNRIIGARIRNNLSGKEFDTYAKVVVNA  291 (442)
Q Consensus       246 Gv~i~~~~~v~~l~~~~~-g~~v~gV~~~~~~~g~~~~i~a~~VVlA  291 (442)
                      ++++++++.+.++.-++. + .+.++.+++..+++..++.+|.|.++
T Consensus        84 nI~v~~~~~v~~i~Gd~~~~-~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          84 KIDVIWNSSVVEAYGDGERD-VLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             TEEEECSEEEEEEEESSSSS-SEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ceEEEeccEEEEEEccCCcc-cEEEEEEEECCCCCEEEEECCEEEEE
Confidence            589999999999998753 3 68899999877888889999999876

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.0005  Score=54.21  Aligned_cols=48  Identities=15%  Similarity=0.060  Sum_probs=36.1

Q ss_pred             HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccC
Q 013476          237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG  293 (442)
Q Consensus       237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG  293 (442)
                      .+...+++.|++++.++.+..+..  +| .    .+.  .+|+...+.||.||+|+|
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~~--~g-v----~~~--~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKIDD--DG-L----HVV--INGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEET--TE-E----EEE--ETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEcC--CC-C----EEe--cCCeEEEEECCEEEECCC
Confidence            455667889999999999998753  33 2    233  245667899999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.25  E-value=0.0001  Score=59.41  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRG--LRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~  104 (442)
                      .|||||||.+|+.+|..|.+.+  .+|+|||+.+
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            6999999999999999999987  4799999975

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.16  E-value=0.00013  Score=59.07  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -||||||||.+|+-+|..|++.|.+|+|++...
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            589999999999999999999999998888764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00028  Score=49.89  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|+|.|.+|+++|..|+++|.+|++.|...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            469999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.15  E-value=0.00015  Score=58.40  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      --|+|||+|.+|..+|.+|+++|++|+|+|+..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            359999999999999999999999999999873

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.94  E-value=0.00021  Score=57.76  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +..|||||||.+|+.+|..|.+.|.+|.|++..+
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            4679999999999999999999999887777653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.93  E-value=0.00039  Score=56.10  Aligned_cols=31  Identities=26%  Similarity=0.234  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .++|||+|..|++.|..|+++|++|.++++.
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999999985

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.77  E-value=0.00087  Score=52.17  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|.+|+.++..+.+.|..|.++|.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            78999999999999999999999999999986

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.73  E-value=0.00094  Score=52.78  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|||+|.+|+.||..+.+.|+.|.++|.+.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            789999999999999999999999999999874

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.64  E-value=0.0062  Score=50.53  Aligned_cols=51  Identities=14%  Similarity=0.117  Sum_probs=37.3

Q ss_pred             HcCceEecCeEEEEEEEcCCCCeEEEEEEEEC------------CCCceEEEEcCEEEEccCC
Q 013476          244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNN------------LSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~------------~~g~~~~i~a~~VVlAtG~  294 (442)
                      +.++.|++.....++..++++.+|+++++...            .+|+...+.||.||.|.|.
T Consensus       163 ~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         163 SRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             SEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            45788889988888888765437888765421            1355567999999999983

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00097  Score=52.69  Aligned_cols=32  Identities=28%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|||+|..|...|..|++.|++|+++++..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~   33 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence            48999999999999999999999999999874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0012  Score=53.49  Aligned_cols=34  Identities=41%  Similarity=0.612  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      --.|.|||+|..|...|+.++.+|++|+++|..+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            3579999999999999999999999999999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.45  E-value=0.0016  Score=49.14  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|+|+|-.|...|..|.+.|++|+++|+.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            48999999999999999999999999999964

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.42  E-value=0.0011  Score=53.36  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|.|||+|..|...|..++..|++|+++|..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            35999999999999999999999999999986

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.38  E-value=0.0014  Score=53.64  Aligned_cols=30  Identities=30%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |.|||.|..|+++|..||+.|++|+.+|..
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            899999999999999999999999999986

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.28  E-value=0.0021  Score=50.05  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             CcEEEE--CCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVI--GGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVV--GaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.||||  |||..|+.+|..|+++|.+|+|+|+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            455555  999999999999999999999999864

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.0024  Score=58.86  Aligned_cols=59  Identities=15%  Similarity=0.099  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCceEecCeEEEEEEEc-CCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476          232 SRLNVGLALTAALAGAAVLNHAEVISLIKD-EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC  296 (442)
Q Consensus       232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~-~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s  296 (442)
                      .++.+++.+.+.-.|+.+.+++.|..|..+ +++ ++.+|+.   ..|+  +++||.||.....+.
T Consensus       376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~-~~~~v~~---~~g~--~i~~k~vI~~psy~p  435 (491)
T d1vg0a1         376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESR-KCKAVID---QFGQ--RIISKHFIIEDSYLS  435 (491)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTC-CEEEEEE---TTSC--EEECSEEEEEGGGBC
T ss_pred             chHHHHHHHHHHhcCcEEEcCCccceEEEecCCC-eEEEEEc---cCCc--EEecCeEEECHHhCC
Confidence            478899999998899999999999999986 345 8888766   2343  899999987765443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.08  E-value=0.0027  Score=47.99  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .++|||.|-.|...|..|.++|++|+++|+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            48999999999999999999999999999874

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.93  E-value=0.0023  Score=51.58  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|||+|..|.+.|..|++.|.+|.|+.+.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            46999999999999999999999999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.56  E-value=0.0048  Score=49.22  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|+++|.+|.|+.+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4899999999999999999999999999653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.35  E-value=0.0095  Score=43.29  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|+|||+|-.|..-|..|.+.|++|+++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3467999999999999999999999999999764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.34  E-value=0.0087  Score=46.87  Aligned_cols=30  Identities=37%  Similarity=0.375  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |.|||.|..|.+.|..|+++|++|+++|+.
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999999999999999999999985

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0053  Score=47.36  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..-.|+|||||..|+.-|..|.+.|++|+||...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467999999999999999999999999999654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.22  E-value=0.011  Score=45.69  Aligned_cols=36  Identities=25%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      .+...|.|||+|..|.++|+.|+..+. +++|+|...
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            466899999999999999999999886 799999763

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.21  E-value=0.012  Score=45.38  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=32.0

Q ss_pred             CCCCcEEEEC-CChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIG-GGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...-.|.||| .|..|.+.|..|.++|++|.++|+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            3445899999 79999999999999999999999864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.90  E-value=0.013  Score=44.65  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=29.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ...|.|||+|-.|.++|+.|+.+|.  .++|+|..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            3579999999999999999999884  79999975

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.83  E-value=0.013  Score=47.19  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=28.0

Q ss_pred             EEEE-CCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVI-GGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVV-GaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |.|| |+|..|.+.|..|+++|++|+|..|.
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            7899 67999999999999999999999885

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.73  E-value=0.017  Score=45.65  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +..|-|||-|.+|...|..|.++|++|.++++..
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3689999999999999999999999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.67  E-value=0.018  Score=45.16  Aligned_cols=32  Identities=34%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|+|+|..|+.++..|...|++|+++|+.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            46999999999999999998899999999986

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.58  E-value=0.02  Score=43.75  Aligned_cols=35  Identities=20%  Similarity=0.476  Sum_probs=30.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      +....|.|||+|-.|.++|+.|+..|.  ++.|+|..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            445679999999999999999999886  69999975

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.56  E-value=0.012  Score=47.54  Aligned_cols=30  Identities=23%  Similarity=0.244  Sum_probs=27.1

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      |.|||.|..|+.+|..++ .|++|+.+|-..
T Consensus         3 I~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            899999999999999887 599999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.022  Score=44.76  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      -.|+|+|+|..|+.++..|...|. +|+++|+.+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            469999999999999999999998 699999863

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.45  E-value=0.028  Score=43.38  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ...|.|||+|..|.++|+.|+.+|.  +++|+|..
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4689999999999999999999987  79999985

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.027  Score=44.16  Aligned_cols=34  Identities=32%  Similarity=0.448  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ...+|+|+|+|-++-++++.|++.|.+|.|+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            3468999999999999999999999999999875

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.34  E-value=0.051  Score=39.55  Aligned_cols=91  Identities=9%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             ccCCCeeEEEeCCCCC---------CCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCC--------------C----
Q 013476          311 ICPSSGVHIVLPDYYS---------PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV--------------I----  363 (442)
Q Consensus       311 ~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~--------------~----  363 (442)
                      +.|+..++++......         ....+++..  .++ .+|+++..+++.+|++.....              .    
T Consensus         1 lvPveHqY~vTepip~l~~~~~~~~~~~~P~vRD--~d~-~~Y~R~e~~gll~G~yE~~~~~~~~~~~~~~~~~~~~~~~   77 (119)
T d1pj5a3           1 LLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRH--QDQ-DLYYREHGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHH   77 (119)
T ss_dssp             CEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEE--GGG-TEEEEEETTEEEEEECCSCCCBCCGGGSCCCCGGGCBTTB
T ss_pred             CccccceEEeecCchHhhhcccccCCCCCCEEEe--CCC-CEEEEEeCCeEEEeecCCCCcccccccccccCccCCCccc
Confidence            3566777777654211         122444443  343 489999999999998864210              0    


Q ss_pred             -CCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccc
Q 013476          364 -TLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLA  405 (442)
Q Consensus       364 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t  405 (442)
                       ......+.+.++..++.+.+.+ |.+.+..|.+.+.|...+|
T Consensus        78 ~~~~~~~d~d~~~~~~e~a~~r~-P~l~~~gi~~~~NGp~sfT  119 (119)
T d1pj5a3          78 MPSRLDFTLEDFLPAWEATKQLL-PALADSEIEDGFNGIFSFT  119 (119)
T ss_dssp             STTEECCCHHHHHHHHHHHHHHC-GGGGGSCEEEEEEEEEEEC
T ss_pred             chhhCCCcHHHHHHHHHHHHHhc-CCcccccccceeecCcccC
Confidence             0112345677888899999999 8999999999999988776

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.021  Score=44.68  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      --|+|+|+|..|+.++..+...|.+|++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            459999999999998888878899999998864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.26  E-value=0.015  Score=41.66  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=29.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-+|+|||+|.+|+=.|..|++.+.+|+++-+..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3689999999999999999999988887776653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.032  Score=43.01  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      +....|.|||+|-.|.++|+.|+..|+  +++|+|..
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            344679999999999999999999987  79999975

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.06  E-value=0.024  Score=43.06  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|.|||+|..|.++|+.|+.+|.  +++|+|..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            58999999999999999999885  79999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.06  E-value=0.026  Score=42.74  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      .|.|||+|..|.++|+.|+.++. +++++|...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            58999999999999999999886 799998753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.85  E-value=0.035  Score=43.25  Aligned_cols=32  Identities=22%  Similarity=0.239  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|+|+|..|+.++..|...|.+|+++++.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            45999999999999998888889999999875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.79  E-value=0.031  Score=43.36  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |-|||-|..|...|..|+++|++|.++++.
T Consensus         3 IgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            889999999999999999999999999986

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.78  E-value=0.031  Score=43.40  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|-|||-|..|...|..|+++|++|.++|+.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4899999999999999999999999999986

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.76  E-value=0.038  Score=41.74  Aligned_cols=32  Identities=38%  Similarity=0.597  Sum_probs=28.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      ..|.|||+|..|.++|+.|+.+|.  +++|+|..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            359999999999999999999987  69999975

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.71  E-value=0.046  Score=41.24  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      ..|.|||+|-.|.++|+.|+..+.  ++.|+|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            369999999999999999999987  799999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.48  E-value=0.047  Score=41.21  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~  104 (442)
                      .|.|||+|-.|.+.|+.|+..|.  ++.|+|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            48999999999999999999985  799999764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.15  E-value=0.053  Score=42.25  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      +...|+|+|+|-++-++++.|.+.|. +|.|+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            45689999999999999999999997 69998774

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.07  E-value=0.049  Score=41.20  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=27.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|+|||| |..|.++|+.|+.+|.  .++|+|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            4899996 9999999999999987  59999875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.02  E-value=0.053  Score=42.72  Aligned_cols=31  Identities=35%  Similarity=0.677  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|-|||-|..|...|..|.+.|++|.++++.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            4889999999999999999999999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.02  E-value=0.05  Score=43.02  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      -.|+|+|+|..|+.+...+...|+ +|+++|.+
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CEEEEECCCccchhheecccccccccccccccc
Confidence            468999999999999999988998 79999885

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.076  Score=40.55  Aligned_cols=33  Identities=18%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.+||+|.|-.|...+..|.+.|.+|++||..+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            469999999999999999999999999999753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.083  Score=37.81  Aligned_cols=34  Identities=26%  Similarity=0.472  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .+.|.|+|||=-|.+.|..+.+.|++|.++|...
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3579999999999999999999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.057  Score=42.05  Aligned_cols=32  Identities=22%  Similarity=0.091  Sum_probs=28.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.|+|+|+|..|+.++..+...|++|++++..
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            46999999999999998888899999999875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.89  E-value=0.047  Score=41.18  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|.|||+|-.|.++|+.|+.+|.  ++.|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            48999999999999999998876  59999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.76  E-value=0.057  Score=40.84  Aligned_cols=31  Identities=32%  Similarity=0.506  Sum_probs=27.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|.|||| |..|.++|+.|+.+|.  ++.|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            4899996 9999999999999985  79999875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.73  E-value=0.077  Score=40.35  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      ..|.|||+|-.|.++|+.|.+.+. +++|+|...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            579999999999999999999886 599999753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.44  E-value=0.071  Score=41.79  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=27.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLR-VGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~  103 (442)
                      -.|+|+|+|..|+.++..+...|.+ |++.|..
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            3699999999999999999999985 7777765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.31  E-value=0.064  Score=42.04  Aligned_cols=33  Identities=33%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      .-.|+|+|+|..|++++..+...|. +|+++|..
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            3469999999999999988888897 69999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.28  E-value=0.077  Score=41.31  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|.|||.|..|.+.|..|.+.|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            49999999999999999999996  67888886

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.26  E-value=0.065  Score=40.29  Aligned_cols=31  Identities=23%  Similarity=0.465  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL--RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~  103 (442)
                      .|.|||+|-.|.++|+.|+.++.  ++.|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            48999999999999999998875  69999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.13  E-value=0.079  Score=41.58  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      -|+|+|+|..|+.+...+...|. +|+++|..+
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            39999999999999999999995 799999863

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.10  E-value=0.082  Score=42.29  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      -.|+|+|+|..|+.++..+...|. +|+++|..
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            479999999999999998887877 68888775

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.82  E-value=0.082  Score=40.31  Aligned_cols=32  Identities=22%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|.|||.|..|.+.|..|+++|++|++.++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            38899999999999999999999999987653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.80  E-value=0.084  Score=40.92  Aligned_cols=32  Identities=25%  Similarity=0.165  Sum_probs=28.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      --|+|+|+|..|+.++..+...|.+|++++..
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            45899999999999998888899999999865

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.76  E-value=0.098  Score=41.64  Aligned_cols=34  Identities=26%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CCCcEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +.--|+|.| +|..|..+|..|+++|++|+++.+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            345688888 6899999999999999999999886

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.083  Score=44.05  Aligned_cols=34  Identities=24%  Similarity=0.529  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ..|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            789999999999999999999998 6999998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.099  Score=34.49  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -|.|+|+|=-|-+.+..+.+.|++|.+++...
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            48999999999999999999999999999764

>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.84  E-value=0.44  Score=33.30  Aligned_cols=74  Identities=7%  Similarity=-0.046  Sum_probs=46.8

Q ss_pred             CceEEeeecCCCcEEEEEec-CC-cEEEccCCCC--CC-CC--CCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeec
Q 013476          329 GMGLIVPKTKDGRVVFMLPW-LG-RTVAGTTDSD--TV-IT--LLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGI  401 (442)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~p~-~g-~~~~g~~~~~--~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~  401 (442)
                      ..+..+... ++..+|.+|. ++ ++.++....-  .+ ..  .+...+++.++.+.+.+.++| |.+... ....-+|+
T Consensus        23 ~fP~fi~~~-~~~~~YGfP~~~~~g~Ki~~~~~g~~~dPd~~dr~~~~~~~~~~~l~~~v~~~~-Pgl~~~-p~~~~~C~   99 (104)
T d2gf3a2          23 DFPGFMVEV-PNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYM-PGANGE-LKRGAVCM   99 (104)
T ss_dssp             TCCEEEEEE-TTEEEEEECBSTTCCEEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHHHHHHC-GGGCSC-EEEEEEEE
T ss_pred             CCCEEEEEC-CCCeEEecCCCCCCceEEEEecCCCccCccccccCCCCCHHHHHHHHHHHHHHC-CCCCCC-eeeccEee
Confidence            444554423 3457899995 33 5777665321  11 11  122367888999999999999 888654 45666888


Q ss_pred             cccc
Q 013476          402 RPLA  405 (442)
Q Consensus       402 r~~t  405 (442)
                      +.+|
T Consensus       100 YT~T  103 (104)
T d2gf3a2         100 YTKT  103 (104)
T ss_dssp             EEEC
T ss_pred             Eccc
Confidence            8776

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.65  E-value=0.0069  Score=50.53  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~  213 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRE  213 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence            579999999999999999999999999999986

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.50  E-value=0.12  Score=40.22  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|+|+|+|-++-++++.|.+.+.+|.|+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            3457999999999999999999988899999885

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.25  Score=35.37  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=30.0

Q ss_pred             CCcEEEECCC-----------hHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGG-----------ATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG-----------~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ...|+|||+|           .++..++..|.+.|++|+++.-++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            4579999998           468899999999999999998875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.19  Score=39.53  Aligned_cols=33  Identities=21%  Similarity=0.501  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      ...|+|+|+|-++-++++.|.+.|. ++.|+.|.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~   51 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR   51 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc
Confidence            4689999999999999999999988 58888875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.16  Score=38.89  Aligned_cols=33  Identities=30%  Similarity=0.277  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|||-|-.|-..|..|...|.+|++.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            479999999999999999999999999999864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.90  E-value=0.19  Score=37.63  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=26.8

Q ss_pred             cEEEEC-CChHHHHHHHHHHHCCC--eEEEEec
Q 013476           73 DILVIG-GGATGCGVALDAATRGL--RVGLVER  102 (442)
Q Consensus        73 DVvVVG-aG~aGl~aA~~La~~G~--~V~liEk  102 (442)
                      .|.||| +|-.|.++|+.|..++.  .++|+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            489999 69999999999999987  6889885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.85  E-value=0.15  Score=39.88  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      .|+|+|+|..|+++...+...|. +|+++|..
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            49999999999999999988897 58888775

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.51  E-value=0.19  Score=40.12  Aligned_cols=32  Identities=34%  Similarity=0.443  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ..|+|.|-|-+|..+|..|++.|.+|++.|..
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            56999999999999999999999999998864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.22  E-value=0.15  Score=39.79  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=26.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEE-EEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVG-LVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~-liEk~  103 (442)
                      -.|+|+|+|..|+.++..+...|.+++ +.+..
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            469999999999999988888898755 45543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.25  Score=39.46  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=29.7

Q ss_pred             CcEEEEC-CChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIG-GGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|+| .|..|...+.+|.++|++|+++.|..
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            4599999 59999999999999999999998864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.05  E-value=0.22  Score=38.81  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           74 ILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        74 VvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      |+|+|+|..|++++..++..|. +|++++.++
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            8999999999999999999985 788887753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.99  E-value=0.14  Score=41.86  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-+|+|||+|..|+=+|+.|++.+.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            3689999999999999999999999988886653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.77  E-value=0.18  Score=38.34  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|||+|=|-.|-.+|.+|...|.+|+|.|..+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            479999999999999999999999999999975

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.60  E-value=0.19  Score=39.34  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -+.-.|+|+|+|.++-++++.|++.| +|.|+-|.
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            44568999999999999999998877 89999774

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.50  E-value=0.25  Score=38.31  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           73 DILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      -|+|+|+|..|+.++..++..|. +|++++..+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            38899999999999999998877 588887753

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.37  E-value=0.21  Score=37.94  Aligned_cols=31  Identities=13%  Similarity=0.119  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|.|||+|..|.+.|..|.+.|++|.+.++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            3789999999999999999999999999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.31  E-value=0.26  Score=37.68  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      .....|+|||+|-+|...|.+|..+|. +|+|+-|.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            456789999999999999999999998 58888764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.04  E-value=0.24  Score=37.57  Aligned_cols=31  Identities=26%  Similarity=0.524  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCC-CeEEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRG-LRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~  103 (442)
                      .|.+||+|..|.+.|..|.+.| .+|.++++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            4889999999999999888877 899999885

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.48  E-value=0.32  Score=40.33  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=26.0

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      |+|.|| +-.|.++|..|+++|++|++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            466674 5689999999999999999999864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.34  E-value=0.33  Score=41.32  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -.|+|+|| |..|...+.+|.++|++|+++.|..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            34999996 9999999999999999999998764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.21  E-value=0.32  Score=41.10  Aligned_cols=33  Identities=36%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           72 LDILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        72 ~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..|+|+|| |..|-..+.+|.++|++|+++.+..
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            56999996 9999999999999999999999864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=0.43  Score=34.58  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=30.6

Q ss_pred             CCCCcEEEECCCh-----------HHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGGGA-----------TGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGaG~-----------aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      +..-.|+|||+|.           ++..+...|.+.|++|+++.-++
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            3446799999985           68889999999999999998875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.81  E-value=0.3  Score=41.04  Aligned_cols=32  Identities=16%  Similarity=0.312  Sum_probs=27.5

Q ss_pred             cEEEECC-C--hHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGG-G--ATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGa-G--~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -++|.|| |  -.|.++|..|+++|++|+++++.+
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4788885 4  489999999999999999999863

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.75  E-value=0.34  Score=36.35  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=25.9

Q ss_pred             cEEEEC-CChHHHHHHHHHHH-C--CCeEEEEeccC
Q 013476           73 DILVIG-GGATGCGVALDAAT-R--GLRVGLVERED  104 (442)
Q Consensus        73 DVvVVG-aG~aGl~aA~~La~-~--G~~V~liEk~~  104 (442)
                      .|.||| +|-.|.++|+.|+. .  ...+.|+|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            489999 59999999999864 3  45799998643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.45  E-value=0.38  Score=33.10  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHH-HHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIGGGATGCGV-ALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~a-A~~La~~G~~V~liEk~  103 (442)
                      .-.+-+||-|-+|+++ |..|.++|++|.--|..
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4579999999999888 99999999999999875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.88  E-value=0.44  Score=39.29  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=26.3

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|.|| +-.|.++|..|+++|++|+++++..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            577774 4479999999999999999999864

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.84  E-value=0.38  Score=39.38  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=27.7

Q ss_pred             cEEEEC-CChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIG-GGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|.| ++-.|.+.|..|+++|++|+++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            378998 45669999999999999999999874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.55  E-value=0.4  Score=39.80  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             cEEEECCC---hHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGG---ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG---~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.||+   -.|.++|.+|+++|++|++..+.
T Consensus        10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_          10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            47888853   37999999999999999998765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=0.47  Score=39.11  Aligned_cols=31  Identities=32%  Similarity=0.435  Sum_probs=26.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.|| +-.|.++|..|+++|++|+++++.
T Consensus         9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            4677784 456999999999999999999885

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=85.22  E-value=0.39  Score=40.12  Aligned_cols=32  Identities=25%  Similarity=0.186  Sum_probs=26.4

Q ss_pred             CcEEEECC-Ch--HHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGG-GA--TGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGa-G~--aGl~aA~~La~~G~~V~liEk~  103 (442)
                      --++|.|| |-  .|.++|..|+++|++|++..+.
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            34788884 43  7999999999999999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.15  E-value=0.46  Score=40.33  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=26.0

Q ss_pred             EEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +||.| ++-.|.++|..|+++|++|+++++.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            55555 6778999999999999999999986

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.13  E-value=0.46  Score=38.88  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=28.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -|+|.|| +-.|.++|..|+++|++|+++++..
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4889996 5679999999999999999998864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.97  E-value=0.5  Score=39.09  Aligned_cols=31  Identities=35%  Similarity=0.475  Sum_probs=26.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.|| +-.|.++|..|+++|++|+++++.
T Consensus         7 ~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4778885 457999999999999999999885

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.97  E-value=0.42  Score=39.06  Aligned_cols=31  Identities=35%  Similarity=0.530  Sum_probs=26.5

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|-|| +-.|.++|..|+++|++|+++++..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~   35 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRR   35 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            566674 6679999999999999999999875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.60  E-value=0.41  Score=36.97  Aligned_cols=32  Identities=13%  Similarity=0.035  Sum_probs=26.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      -.|+|+|+|..|+.++..|...|. +|+++++.
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            469999999999999888877786 56777764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.58  E-value=0.48  Score=36.43  Aligned_cols=32  Identities=25%  Similarity=0.238  Sum_probs=26.9

Q ss_pred             CcEEEEC-CChHHHHHHHHHHHCCC-eEEEEecc
Q 013476           72 LDILVIG-GGATGCGVALDAATRGL-RVGLVERE  103 (442)
Q Consensus        72 ~DVvVVG-aG~aGl~aA~~La~~G~-~V~liEk~  103 (442)
                      -.|+|+| +|..|+.++..|...|. +|++++..
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccc
Confidence            4599999 49999999988888885 78888875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.55  E-value=0.46  Score=39.55  Aligned_cols=31  Identities=29%  Similarity=0.493  Sum_probs=26.2

Q ss_pred             EEEECCC-hHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGGG-ATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGaG-~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|.||+ -.|.++|..|+++|++|+++++..
T Consensus        12 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          12 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5666754 579999999999999999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.46  E-value=1.1  Score=33.72  Aligned_cols=56  Identities=9%  Similarity=-0.069  Sum_probs=36.2

Q ss_pred             HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEE--------------EEEEECCCCceEEEEcCEEEEccCC
Q 013476          236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIG--------------ARIRNNLSGKEFDTYAKVVVNAAGP  294 (442)
Q Consensus       236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~g--------------V~~~~~~~g~~~~i~a~~VVlAtG~  294 (442)
                      ..+.+.++++|+++++++.+.++..+..  .+..              +.... ...+...+.+|.+|+++|-
T Consensus        86 ~~~~~~l~~~GV~i~~~~~v~~i~~~~v--~l~~~~~~~~~~v~~~~g~~~~~-~~~~~~~le~D~vilvtgR  155 (156)
T d1djqa2          86 PNMMRRLHELHVEELGDHFCSRIEPGRM--EIYNIWGDGSKRTYRGPGVSPRD-ANTSHRWIEFDSLVLVTGR  155 (156)
T ss_dssp             HHHHHHHHHTTCEEEETEEEEEEETTEE--EEEETTCSCSCCCCCCTTSCSSC-CCCCCEEEECSEEEEESCE
T ss_pred             HHHHHHHhhccceEEeccEEEEecCcce--EEEeeeccccceeeeeeEEEecc-cCCccCcEecceEEEEecC
Confidence            4667778889999999999999875321  1110              00000 1223456889999999985

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=84.34  E-value=0.55  Score=39.27  Aligned_cols=30  Identities=20%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             EEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.| ++-.|.++|..|+++|++|+++++.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           9 AIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            56667 4557999999999999999999985

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.14  E-value=0.49  Score=38.13  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=28.4

Q ss_pred             CCcEEEECCChHHHHHHHHHH--------------------HCCC-eEEEEeccC
Q 013476           71 PLDILVIGGGATGCGVALDAA--------------------TRGL-RVGLVERED  104 (442)
Q Consensus        71 ~~DVvVVGaG~aGl~aA~~La--------------------~~G~-~V~liEk~~  104 (442)
                      .-.|||||+|.+++=+|..|+                    +.|. +|.++-|..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            358999999999999998887                    5676 599998864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.99  E-value=0.59  Score=38.46  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=26.0

Q ss_pred             EEEE--CCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVI--GGGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVV--GaG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++||  |++-.|.++|..|+++|++|+++++.+
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           8 VIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4455  467789999999999999999999863

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.92  E-value=0.55  Score=38.65  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGGA-TGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG~-aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.||+- .|...|..|+++|++|+++++.
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~   40 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   40 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            45557544 6999999999999999999986

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.6  Score=38.67  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=25.5

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.|| +-.|.++|..|+++|++|+++++.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456674 557999999999999999999986

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.80  E-value=0.5  Score=40.06  Aligned_cols=32  Identities=19%  Similarity=0.140  Sum_probs=27.4

Q ss_pred             CcEEEECCC---hHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGGG---ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGaG---~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      --++|.||+   -.|.++|..|+++|++|++..+.
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            458899975   58999999999999999998653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.42  Score=43.01  Aligned_cols=34  Identities=26%  Similarity=0.643  Sum_probs=31.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476           72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDF  105 (442)
Q Consensus        72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~  105 (442)
                      ..|+|||+|..|+.+|..|+..|. +++|+|-..+
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            789999999999999999999998 6999998764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.70  E-value=0.63  Score=38.23  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=26.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.|| +-.|.++|..|+++|++|+++++.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3677785 457999999999999999999875

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=83.57  E-value=0.62  Score=39.14  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=25.0

Q ss_pred             EEEE-C-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVI-G-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVV-G-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |+|| | ++-.|.++|..|+++|++|+|..+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            6666 5 4568999999999999999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.41  E-value=0.64  Score=38.66  Aligned_cols=31  Identities=32%  Similarity=0.483  Sum_probs=26.1

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.|| +-.|.++|..|+++|++|+++++.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3677785 447999999999999999999885

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.39  E-value=0.54  Score=39.02  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=26.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.|| +-.|.++|..|+++|++|++.+++
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3678885 567999999999999999999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=83.11  E-value=0.65  Score=38.57  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=24.4

Q ss_pred             EEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.| ++-.|.++|..|+++|++|++.++.
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34445 4557999999999999999999885

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.87  E-value=0.69  Score=38.29  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=24.8

Q ss_pred             EEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           75 LVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        75 vVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      +|.|| +-.|.++|..|+++|++|++.++.
T Consensus         5 lITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           5 LVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            55575 457999999999999999999985

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.87  E-value=0.71  Score=37.65  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           72 LDILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        72 ~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      --++|.|| +-.|.++|..|+++|++|+++++.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~   37 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARN   37 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            34788885 557999999999999999999986

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=82.65  E-value=0.7  Score=38.79  Aligned_cols=31  Identities=19%  Similarity=0.481  Sum_probs=26.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|-|| +-.|.++|..|+++|++|+++++.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4677785 567999999999999999999886

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=82.50  E-value=0.77  Score=37.78  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=26.1

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|.|| +-.|.++|..|+++|++|++.++..
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           8 AVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            566775 4579999999999999999998863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=82.46  E-value=0.73  Score=38.21  Aligned_cols=30  Identities=33%  Similarity=0.647  Sum_probs=25.7

Q ss_pred             EEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|-||+ -.|.++|..|+++|++|++.++.
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           7 VLITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6677854 57999999999999999999985

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=82.45  E-value=0.74  Score=38.09  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=26.6

Q ss_pred             cEEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.||+ -.|.++|..|+++|++|++.++.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            37888855 57999999999999999999985

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.41  E-value=0.54  Score=38.88  Aligned_cols=30  Identities=27%  Similarity=0.197  Sum_probs=25.2

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.|| +-.|.++|..|+++|++|+++++.
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            455575 457999999999999999999885

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=0.75  Score=35.28  Aligned_cols=35  Identities=11%  Similarity=0.018  Sum_probs=30.6

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           70 NPLDILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .-.+|+|||. .+.|...|..|+++|+.|+++.+..
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            4468999994 6799999999999999999998864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.20  E-value=0.76  Score=38.15  Aligned_cols=30  Identities=33%  Similarity=0.500  Sum_probs=26.1

Q ss_pred             EEEECCC-hHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGG-ATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG-~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.||+ -.|.++|..|+++|++|++++++
T Consensus        11 alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_          11 ALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6777864 57999999999999999999875

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=82.20  E-value=0.69  Score=35.25  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             CCCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           69 SNPLDILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        69 ~~~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ..-.+|+|||. .+.|...|..|.++|++|+++.+..
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            44578999995 5589999999999999999997653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.07  E-value=0.79  Score=37.57  Aligned_cols=31  Identities=23%  Similarity=0.257  Sum_probs=26.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.|| +-.|.++|..|+++|++|++++++
T Consensus         7 ~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           7 AVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3677775 568999999999999999999986

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.04  E-value=0.65  Score=35.69  Aligned_cols=33  Identities=24%  Similarity=0.162  Sum_probs=29.4

Q ss_pred             CCcEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           71 PLDILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        71 ~~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -.+|+||| +-+.|...|..|+++|+.|+++...
T Consensus        29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          29 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            36899999 6688999999999999999999765

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=82.00  E-value=0.77  Score=37.21  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ....|+|-|-|-+|..+|..|.+.|++|++.+-+
T Consensus        38 ~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          38 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            3467999999999999999999999999988653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=81.88  E-value=0.84  Score=37.57  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=26.2

Q ss_pred             EEEEC-CChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           74 ILVIG-GGATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        74 VvVVG-aG~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      ++|-| ++-.|.++|..|+++|++|++.++..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           8 VLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56667 56679999999999999999999863

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.87  E-value=0.8  Score=37.78  Aligned_cols=30  Identities=27%  Similarity=0.594  Sum_probs=26.3

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|-|| +-.|.++|..|+++|++|+++++.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           9 VVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            677785 567999999999999999999885

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.79  E-value=0.82  Score=37.54  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=25.6

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|-|| +-.|.++|..|+++|++|++.++.
T Consensus         9 alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           9 ALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            566675 557999999999999999999886

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.77  E-value=0.81  Score=37.90  Aligned_cols=30  Identities=37%  Similarity=0.495  Sum_probs=25.9

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |+|.|| +-.|.++|..|+++|++|++.++.
T Consensus        13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            778884 456999999999999999999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=81.70  E-value=0.8  Score=37.91  Aligned_cols=30  Identities=33%  Similarity=0.468  Sum_probs=24.9

Q ss_pred             E-EEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 I-LVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 V-vVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      | +|-| ++-.|.++|..|+++|++|++.++.
T Consensus         4 ValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           4 VALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5 4556 4457999999999999999999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.56  E-value=0.8  Score=38.88  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=25.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      =++|.|| +-.|.++|..|+++|++|++.++.
T Consensus        14 valITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3677774 457999999999999999999885

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.51  E-value=0.24  Score=36.18  Aligned_cols=35  Identities=14%  Similarity=0.289  Sum_probs=26.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH-CCCe-EEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAAT-RGLR-VGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~-~G~~-V~liEk~~  104 (442)
                      +++.|+|+|||-+|.+.+.++.+ .+++ |..+|-.+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            34789999999999988876643 4777 66777664

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.50  E-value=0.65  Score=38.43  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             cEEEECCC---hHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGG---ATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG---~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -|+|.||+   -.|.++|..|+++|++|++..+.+
T Consensus         7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            36777754   367899999999999999998753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.46  E-value=0.84  Score=37.84  Aligned_cols=31  Identities=29%  Similarity=0.361  Sum_probs=27.3

Q ss_pred             cEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.| ++-.|.++|..|+++|++|++.++.
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            478888 5667999999999999999999986

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.27  E-value=0.92  Score=36.39  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476           70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERED  104 (442)
Q Consensus        70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~  104 (442)
                      .+..|||+|+|-+|+..|..+.+.+. ++.++|+..
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            44779999999999999999988887 499999974

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.99  E-value=0.7  Score=35.55  Aligned_cols=30  Identities=33%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      |+|.|+ |..|+.+...+...|++|+.++..
T Consensus        31 VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~   61 (171)
T d1iz0a2          31 VLVQAAAGALGTAAVQVARAMGLRVLAAASR   61 (171)
T ss_dssp             EEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeccccchhhhhhhhccccccccccccc
Confidence            677795 999998888777789999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.94  E-value=0.67  Score=35.72  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=24.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476           73 DILVIGGGATGCGVALDAATRGLR-VGLVERE  103 (442)
Q Consensus        73 DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~  103 (442)
                      -|+|+|+|..|+.+...+...|.+ |++++..
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            489999999999998888888975 6666553

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.70  E-value=0.68  Score=38.67  Aligned_cols=30  Identities=27%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGGGA-TGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGaG~-aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.||.- .|.++|..|+++|++|+++.+.
T Consensus        17 alITGassGIG~aiA~~la~~G~~Vil~~r~   47 (269)
T d1xu9a_          17 VIVTGASKGIGREMAYHLAKMGAHVVVTARS   47 (269)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            77888544 6999999999999999999885

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.60  E-value=0.66  Score=38.65  Aligned_cols=30  Identities=23%  Similarity=0.387  Sum_probs=24.9

Q ss_pred             EEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.| ++-.|.++|..|+++|++|++.+++
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           8 AIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            34445 4567999999999999999999886

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.43  E-value=0.68  Score=38.46  Aligned_cols=31  Identities=26%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      -++|.|| +-.|.++|..|+++|++|+++++.
T Consensus        10 ~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_          10 TVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3666674 446899999999999999999886

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.42  E-value=0.66  Score=38.84  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=25.3

Q ss_pred             EEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.|| +-.|.++|..|+++|++|++.++.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~l~~r~   38 (272)
T d1xkqa_           8 VIITGSSNGIGRTTAILFAQEGANVTITGRS   38 (272)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            566674 456899999999999999999885

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.28  E-value=1.1  Score=34.42  Aligned_cols=31  Identities=26%  Similarity=0.334  Sum_probs=26.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      .|+|+|+ |..|+.+...+...|++|+++...
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeccccccccccccccccCccccccccc
Confidence            4999996 999998887777789999988753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.25  E-value=0.58  Score=39.02  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGG-GATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      .|+|.|| |..|-..+.+|.++|++|+.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            3899997 9999999999999999999998864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.11  E-value=0.71  Score=38.13  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             EEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476           74 ILVIG-GGATGCGVALDAATRGLRVGLVERE  103 (442)
Q Consensus        74 VvVVG-aG~aGl~aA~~La~~G~~V~liEk~  103 (442)
                      ++|.| ++-.|.++|..|+++|++|+++++.
T Consensus         9 alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           9 AIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            55556 4456999999999999999999885

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.04  E-value=0.77  Score=37.54  Aligned_cols=32  Identities=31%  Similarity=0.548  Sum_probs=27.1

Q ss_pred             cEEEECCC-hHHHHHHHHHHHCCCeEEEEeccC
Q 013476           73 DILVIGGG-ATGCGVALDAATRGLRVGLVERED  104 (442)
Q Consensus        73 DVvVVGaG-~aGl~aA~~La~~G~~V~liEk~~  104 (442)
                      -++|.||+ -.|.++|..|+++|++|+++++..
T Consensus         9 ~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1           9 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            46777754 579999999999999999999874