Citrus Sinensis ID: 013477

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MGDTEMVDQDSLHISEANLVEASAQQQQASQQPSENGQSSCRETAEDKPETLPSVDEVFPEKSDAEATAGVNTKSGGGGAGTDELPESTSKTNGDDTHVENEPKTNTSVTPIPHGESSTSKAEDESVRKSKNWLNDIEMGEADEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPASSFPQPTNAGKEASGYQTPGSSRARRDAAARAMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEADKQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFEGSA
ccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHccHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccHHHHHHcccHHHHHcccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHccccccEEccccccHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccEEEcccccccccccEEEEEEccEEEEEccccccc
ccccccccccccccccccEEEcccccccccccccccccccccccHccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHccccccccccEcccccccccccccccccccccccccccccHHHcccHcccccccEEEEccccccEEEEEEEcccccEEEEEEcccccHcHEEEEcccccEEEEEcccccccccccccccEEEEEccccccccccEEEEEEccEEEEEEcccccc
mgdtemvdqdslhiSEANLVEASAQQqqasqqpsengqsscretaedkpetlpsvdevfpeksdaeatagvntksggggagtdelpestsktngddthvenepktntsvtpiphgesstskaedesvrKSKNWLndiemgeadegtpEEQAEFMKEIESFYRenalefkppkfygeplnCLKLWRAVVRLGGYEVVTASKLWRqvgesfhppktcttvsWTFRIFYEKALLEYEKHKrlsgelqlpassfpqptnagkeasgyqtpgssrARRDAAARAMQGWHAQRLlghgevaepiikdkslpsparrEKQLkniglpknrtldSAEKAALTEADKQIITEIVdvgppadwvkiNVREAKDCYEVYALVPGLLREEVrvqsdpagrlvitgepeqvdnpwgitpfkkvvilpsridplqtsavVSLHGRLYVRVPFEGSA
mgdtemvdqdSLHISEANLVEASAQQQQasqqpsengqsSCRETAEDKPETLPSVDEVFpeksdaeatagvntksggggagtdelpestsktngddthvenepktntsvtpiphgesstskaedesvrkSKNWLNDiemgeadegtpEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLwrqvgesfhppktcttvswTFRIFYEKALLEYEKHKRLSGELQLPAssfpqptnagkeasgyqtpgSSRARRDAAARAMQGWHAQRllghgevaepiikdkslpsparrekqlkniglpknrtldSAEKAALTEADKQIITeivdvgppadwVKINVREAKDCYEVYALVPGLLREEVRVQSDPagrlvitgepeqvdnpwgiTPFKKVVILPSRIDplqtsavvslhgrlyvrvpfegsa
MGDTEMVDQDSLHISEANLVEasaqqqqasqqPSENGQSSCRETAEDKPETLPSVDEVFPEKSDAEATAGVNTKSGGGGAGTDELPESTSKTNGDDTHVENEPKTNTSVTPIPHGESSTSKAEDESVRKSKNWLNDIEMGEADEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPASSFPQPTNAGKEASGYQTPGSSrarrdaaaraMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEADKQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFEGSA
************************************************************************************************************************************************************IESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEK***********************************************WHAQRLLG*********************************************ADKQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPF****
********************************************************************************************************************************************************FMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKH*******************************************************************************************************************DWVKINVREAKDCYEVYALVP*************************************VVILPSRIDPLQTSAVVSLHGRLYVRVPFE***
*********DSLHISEANLVE*******************************PSVDEVFPE*******************************************************************KSKNWLNDIEMGEA********AEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPASSF********************************WHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEADKQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFEGSA
**************************************************************************************************************************************************PEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGE**L*******************************************************************************************DKQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFEG**
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MGDTEMVDQDSLHISEANLVEASAQQQQASQQPSENGQSSCRETAEDKPETLPSVDEVFPEKSDAEATAGVNTKSGGGGAGTDELPESTSKTNGDDTHVENEPKTNTSVTPIPHGESSTSKAEDESVRKSKNWLNDIEMGEADEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPASSFPQPTNAGKEASGYQTPGSSRARRDAAARAMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEADKQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFEGSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
Q0WNR6434 AT-rich interactive domai yes no 0.733 0.746 0.691 1e-125
C0SUW7398 AT-rich interactive domai no no 0.719 0.798 0.662 1e-117
Q940Y3786 AT-rich interactive domai no no 0.703 0.395 0.625 1e-108
Q9SGS2338 High mobility group B pro no no 0.278 0.363 0.301 5e-06
Q68CP9 1835 AT-rich interactive domai yes no 0.187 0.045 0.285 5e-06
O02326467 AT-rich interactive domai yes no 0.169 0.160 0.328 2e-05
A2BEA6570 AT-rich interactive domai no no 0.219 0.170 0.316 2e-05
Q9MAT6 448 High mobility group B pro no no 0.230 0.227 0.274 4e-05
Q24573 911 Protein dead ringer OS=Dr yes no 0.196 0.095 0.284 7e-05
Q99856593 AT-rich interactive domai no no 0.212 0.158 0.291 8e-05
>sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=2 SV=1 Back     alignment and function desciption
 Score =  450 bits (1157), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/327 (69%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 115 GESSTSKAEDESVRKSKNWL-NDIEMGEADE-GTPEEQAEFMKEIESFYRENALEFKPPK 172
           G+ S+    +ESV+K K WL +D E  E DE G P++Q  F+KE+E+F +EN LEFK PK
Sbjct: 108 GDPSSPHVPEESVKKWKTWLLSDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPK 167

Query: 173 FYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232
           FYG+PLNCLKLWRAV++LGGY+VVT SKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE
Sbjct: 168 FYGQPLNCLKLWRAVIKLGGYDVVTTSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 227

Query: 233 YEKHKRLSGELQLPASSFPQPTNAGKEASGYQTPGSSRARRDAAARAMQGWHAQRLLGHG 292
           YEKH R +GEL LP S+    +   KEAS +Q  GS R RRDAAARAMQGWH+QRLLG G
Sbjct: 228 YEKHLRQNGELNLPGSASLPSSGIEKEASSHQASGSGRTRRDAAARAMQGWHSQRLLGSG 287

Query: 293 EVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEADKQIITEIVDVGPPAD 352
           EV EPI+K+K L S   ++K LKNIG+ K +T    +     E++KQ   E++DVGPPAD
Sbjct: 288 EVTEPIVKEKGLNS-TPKQKNLKNIGVQKQKTTTGMDLVFSHESEKQSTAEVIDVGPPAD 346

Query: 353 WVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVI 412
           WVKINVRE KDC+E++ALVPGLLREEVRVQSDPAGRLVI G+PEQ+DNPWGITPFKKVV 
Sbjct: 347 WVKINVRETKDCFEIFALVPGLLREEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVN 406

Query: 413 LPSRIDPLQTSAVVSLHGRLYVRVPFE 439
            P+RIDPL TSAVVSLHGRL+VRVPFE
Sbjct: 407 FPARIDPLHTSAVVSLHGRLFVRVPFE 433

Arabidopsis thaliana (taxid: 3702)
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis thaliana GN=ARID6 PE=2 SV=1 Back     alignment and function description
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1 Back     alignment and function description
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2 Back     alignment and function description
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1 OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3 Back     alignment and function description
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio GN=arid3a PE=1 SV=1 Back     alignment and function description
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1 Back     alignment and function description
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2 Back     alignment and function description
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens GN=ARID3A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
255539340449 transcription factor, putative [Ricinus 0.988 0.973 0.651 1e-152
356517143404 PREDICTED: uncharacterized protein LOC10 0.748 0.819 0.747 1e-138
356508454414 PREDICTED: uncharacterized protein LOC10 0.807 0.862 0.694 1e-137
346230643425 ARID and Hsp20 domains containing protei 0.780 0.811 0.717 1e-136
224061827307 predicted protein [Populus trichocarpa] 0.685 0.986 0.785 1e-132
359491923444 PREDICTED: AT-rich interactive domain-co 0.787 0.783 0.684 1e-125
297745611449 unnamed protein product [Vitis vinifera] 0.789 0.777 0.682 1e-125
388502698372 unknown [Medicago truncatula] 0.773 0.919 0.686 1e-125
42563264434 ARID/BRIGHT DNA-binding domain-containin 0.733 0.746 0.691 1e-124
297842413437 ARID/BRIGHT DNA-binding domain-containin 0.733 0.741 0.694 1e-123
>gi|255539340|ref|XP_002510735.1| transcription factor, putative [Ricinus communis] gi|223551436|gb|EEF52922.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/454 (65%), Positives = 343/454 (75%), Gaps = 17/454 (3%)

Query: 1   MGDTEMVDQD----SLHISEANLVEASAQQQQASQQPSENGQSSCRETAEDKPETLPS-- 54
           M D EM  QD    +  +S  + V ++ Q ++  + PSENG +    +  DK +TLPS  
Sbjct: 1   MEDAEMPSQDLPAGTTDVSLVDGVVSTEQPKENERNPSENGNTPAASSEGDKTDTLPSDV 60

Query: 55  ---VDEVFPEKSDAEATAGVNTKSGGGGAGTDELPESTSKTNGDDTHVENEPKTNTSVTP 111
               ++V PE             +        E     SK +GD   + ++     +VTP
Sbjct: 61  YMSENQVLPESKTTTTATTGTNVNDANSIKVRE-----SKDDGDGGTIVHDQPEALAVTP 115

Query: 112 IPHGESSTSKAEDESVRKSKNWLNDIEMGEADE-GTPEEQAEFMKEIESFYRENALEFKP 170
           +   + ST +A+ ES  KSK    D+EMGEADE GTPEE+A FM+E+E+F++ENALEFKP
Sbjct: 116 LAPRKYSTPRAKHESGAKSKGVWTDVEMGEADESGTPEERAAFMRELETFHKENALEFKP 175

Query: 171 PKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230
           PKFYGEPLNCLKLWR+V+RLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL
Sbjct: 176 PKFYGEPLNCLKLWRSVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 235

Query: 231 LEYEKHKRLSGELQLPASSFPQPTNAGKEASGYQTPGSSRARRDAAARAMQGWHAQRLLG 290
           LEYEKHKR SGELQLP+S   QP +  KE SGYQ PGS RARRDAAARAMQGWHAQRLLG
Sbjct: 236 LEYEKHKRQSGELQLPSSPPHQPASVEKEVSGYQAPGSGRARRDAAARAMQGWHAQRLLG 295

Query: 291 HGEVAEPIIKDKSLPSPARREKQLKNIGLPKNR-TLDSAEKAALTEADKQIITEIVDVGP 349
           HGEV+EPIIKD+S+ S  RREK LK+IGL K +  L+ AEK A  E DK++  EIVDVGP
Sbjct: 296 HGEVSEPIIKDRSVNSAPRREKPLKSIGLHKQKNNLELAEKHANIETDKELDMEIVDVGP 355

Query: 350 PADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKK 409
           PADWVKINVRE+KDC+EVYALVPGLLREEVRVQSDPAGRLVITG+PEQ+DNPWGITPFKK
Sbjct: 356 PADWVKINVRESKDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQLDNPWGITPFKK 415

Query: 410 VVILPSRIDPLQTSAVVSLHGRLYVRVPFE-GSA 442
           V+ LPSRIDPLQTSAVVSLHGRLYVRVPFE GSA
Sbjct: 416 VISLPSRIDPLQTSAVVSLHGRLYVRVPFERGSA 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356517143|ref|XP_003527249.1| PREDICTED: uncharacterized protein LOC100797486 [Glycine max] Back     alignment and taxonomy information
>gi|356508454|ref|XP_003522972.1| PREDICTED: uncharacterized protein LOC100777965 [Glycine max] Back     alignment and taxonomy information
>gi|346230643|gb|AEO22030.1| ARID and Hsp20 domains containing protein [Lotus japonicus] Back     alignment and taxonomy information
>gi|224061827|ref|XP_002300618.1| predicted protein [Populus trichocarpa] gi|222842344|gb|EEE79891.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491923|ref|XP_002273480.2| PREDICTED: AT-rich interactive domain-containing protein 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745611|emb|CBI40776.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388502698|gb|AFK39415.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|42563264|ref|NP_177777.3| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] gi|42572131|ref|NP_974156.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] gi|122229971|sp|Q0WNR6.1|ARID5_ARATH RecName: Full=AT-rich interactive domain-containing protein 5; Short=ARID domain-containing protein 5 gi|110738615|dbj|BAF01233.1| putative DNA-binding protein [Arabidopsis thaliana] gi|222424365|dbj|BAH20138.1| AT1G76510 [Arabidopsis thaliana] gi|332197730|gb|AEE35851.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] gi|332197731|gb|AEE35852.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842413|ref|XP_002889088.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334929|gb|EFH65347.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2037345398 AT1G20910 [Arabidopsis thalian 0.719 0.798 0.634 1.9e-108
TAIR|locus:2827523786 AT2G17410 [Arabidopsis thalian 0.764 0.430 0.565 7.5e-101
UNIPROTKB|F1PXY8 602 ARID5A "Uncharacterized protei 0.355 0.260 0.286 1.5e-07
UNIPROTKB|Q3SWY1 592 ARID5A "AT-rich interactive do 0.348 0.260 0.274 1.8e-06
UNIPROTKB|G3MY61 637 ARID5A "AT-rich interactive do 0.348 0.241 0.274 2e-06
UNIPROTKB|F1SU48 597 ARID5A "Uncharacterized protei 0.273 0.202 0.292 2.3e-06
MGI|MGI:2443039 590 Arid5a "AT rich interactive do 0.314 0.235 0.284 3e-06
UNIPROTKB|F1NIM8 1101 F1NIM8 "Uncharacterized protei 0.312 0.125 0.260 3.2e-06
UNIPROTKB|F1NK39 1184 F1NK39 "Uncharacterized protei 0.312 0.116 0.260 3.5e-06
ASPGD|ASPL0000041042 980 AN2905 [Emericella nidulans (t 0.269 0.121 0.298 3.6e-06
TAIR|locus:2037345 AT1G20910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 203/320 (63%), Positives = 247/320 (77%)

Query:   121 KAEDESVRKSKNWLNDIEMGEADE-GTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLN 179
             K E E+ +K K WL D E    DE GTP EQ  F++E+E+FY+E+ LEFKPPKFYG+PLN
Sbjct:    79 KTEGENAKKRKTWLLDSEAQGTDEAGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLN 138

Query:   180 CLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRL 239
              LKLWRAVV LGGYEVVT +KLWRQVGESF+PPKTCTTVS+TFR FYEKALLEYEK  R 
Sbjct:   139 ILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRN 198

Query:   240 SGELQLPASSFPQPTNAGKEASGYQTPGSSXXXXXXXXXXMQGWHAQRLLGHGEVAEPII 299
             +GEL LP S+    ++  KE S +Q  GS           MQGWHAQRL+G GEV  P +
Sbjct:   199 NGELNLPGSTLILSSSVEKEPSSHQGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAV 258

Query:   300 KDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEADKQIITEIVDVGPPADWVKINVR 359
             KDK L S  + +K LK+IGL K++   S +     EADKQ+  E+VDVGP ADWVKINV+
Sbjct:   259 KDKGLISTPKHKK-LKSIGLQKHKQQTSMDHVVTNEADKQLAAEVVDVGPVADWVKINVK 317

Query:   360 EAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDP 419
             E+KD +E++ALVPGLLR+EVR+QSDPAG++VITG+PEQ+DNPWGITPFKK+V L +RIDP
Sbjct:   318 ESKDSFEIFALVPGLLRKEVRIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDP 377

Query:   420 LQTSAVVSLHGRLYVRVPFE 439
             L TSAV+S+HGRL++RVPFE
Sbjct:   378 LHTSAVMSMHGRLFIRVPFE 397
GO:0003677 "DNA binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2827523 AT2G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXY8 ARID5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWY1 ARID5A "AT-rich interactive domain-containing protein 5A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3MY61 ARID5A "AT-rich interactive domain-containing protein 5A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU48 ARID5A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2443039 Arid5a "AT rich interactive domain 5A (MRF1-like)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIM8 F1NIM8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK39 F1NK39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000041042 AN2905 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WNR6ARID5_ARATHNo assigned EC number0.69110.73300.7465yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
smart0050193 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interac 4e-29
pfam0138890 pfam01388, ARID, ARID/BRIGHT DNA binding domain 8e-29
smart0101488 smart01014, ARID, ARID/BRIGHT DNA binding domain 1e-24
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 1e-07
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 3e-07
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 7e-04
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 0.001
>gnl|CDD|128777 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interaction domain) domain Back     alignment and domain information 
 Score =  108 bits (273), Expect = 4e-29
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 148 EEQAEFMKEIESFYRENALE-FKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVG 206
            E+  F+  +  F  E      K P   G+PL+  +L+R V   GGY+ VT  K W+++ 
Sbjct: 1   RERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIA 60

Query: 207 ESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238
                P T T+ + + R  YE+ LL YE+  R
Sbjct: 61  RELGIPDTSTSAASSLRKHYERYLLPYERFLR 92

DNA-binding domain containing a helix-turn-helix structure. Length = 93
>gnl|CDD|216473 pfam01388, ARID, ARID/BRIGHT DNA binding domain Back     alignment and domain information
>gnl|CDD|198082 smart01014, ARID, ARID/BRIGHT DNA binding domain Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
KOG2744512 consensus DNA-binding proteins Bright/BRCAA1/RBP1 99.96
smart0050193 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) 99.93
PF0138892 ARID: ARID/BRIGHT DNA binding domain; InterPro: IP 99.91
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.72
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.72
PRK10743137 heat shock protein IbpA; Provisional 99.72
PRK11597142 heat shock chaperone IbpB; Provisional 99.71
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.7
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.69
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.67
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.66
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.66
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.66
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.64
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.63
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.59
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.58
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.57
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.57
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.56
KOG2510532 consensus SWI-SNF chromatin-remodeling complex pro 99.53
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.5
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.26
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.08
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.06
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 98.85
KOG3591173 consensus Alpha crystallins [Posttranslational mod 98.7
cd0646384 p23_like Proteins containing this p23_like domain 98.44
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.01
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 97.74
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 96.81
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 96.31
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 95.28
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 95.18
cd0646892 p23_CacyBP p23_like domain found in proteins simil 94.86
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 94.55
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 93.18
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 92.47
cd0648887 p23_melusin_like p23_like domain similar to the C- 91.37
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription] Back     alignment and domain information 
Probab=99.96  E-value=2.2e-29  Score=264.79  Aligned_cols=327  Identities=24%  Similarity=0.262  Sum_probs=246.5

Q ss_pred             CCCCCCCCCcchhhcccCCccccccc-CC-CCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhc
Q 013477          114 HGESSTSKAEDESVRKSKNWLNDIEM-GE-ADEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRL  190 (442)
Q Consensus       114 ~~~~~tpk~~~~~~~~~~~~~~d~~~-~~-~~~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~r  190 (442)
                      +..+++++....+....+.+...... .. ++++.+..++.||+.|+.||+.+|++| ++|+|+|++||||.||.+|+++
T Consensus       126 q~~~sq~~~~~~~~~~~~~~~~~~s~~~~~~~e~~~~~~eeF~~dl~~f~~~~~~~~~~iPii~~~~ldL~~Ly~lV~s~  205 (512)
T KOG2744|consen  126 QLPPSQPEVFPTPVIQKKTKRARRSNLPLYETEGVPKSSEEFMEDLRRFMKKRGTKVKSIPIIGGQPLDLHWLYALVTSR  205 (512)
T ss_pred             cCCccCCccCCCccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCcceeccccCCCcchHHHHHHHHhcC
Confidence            45566666666666666677775443 33 456888899999999999999999999 5999999999999999999999


Q ss_pred             CcccccccCcchhHhhhhcCCCC-CCCcHHHHHHHHHHHhHHHHHHhhhhc--CCCCCCCCCCC-CCCCCCCCCCCCCCC
Q 013477          191 GGYEVVTASKLWRQVGESFHPPK-TCTTVSWTFRIFYEKALLEYEKHKRLS--GELQLPASSFP-QPTNAGKEASGYQTP  266 (442)
Q Consensus       191 GGydkVt~~KkWreVa~~LglP~-t~TSas~~LR~~YeKyLlpYE~~~~~~--G~~~~P~~~~~-e~~~~eke~~~~~~~  266 (442)
                      ||+++|+..|+|++|...|++|. ++|+++|.||++|.|+|++||+.+...  +.+..|.+... ......+|..-+..+
T Consensus       206 GG~~~V~~~k~Wrev~~~l~~pt~tiTsaaf~lr~~y~K~L~~ye~~~~~~~~~pln~p~~~~~~a~~~~~rE~~~~~~~  285 (512)
T KOG2744|consen  206 GGLDEVTNKKLWREVIDGLNFPTPTITSAAFTLRKQYLKLLFEYECEFEKNRHVPLNSPAELSEEASSSNRREGRRHELS  285 (512)
T ss_pred             CchhHhhhhhhHHHHhccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccccccccccccccccccC
Confidence            99999999999999999999999 999999999999999999999997755  66666654433 122222222222223


Q ss_pred             CC-chhhh---------HHHHHhccccccccccCCCcccCcccCCCCCCChhHhhhcccccC------CCCCC------C
Q 013477          267 GS-SRARR---------DAAARAMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIG------LPKNR------T  324 (442)
Q Consensus       267 gs-gRarr---------daaaramqGwhs~r~lg~g~v~~p~ikdk~~~~~~~r~k~lk~~~------~~k~~------~  324 (442)
                      ++ ++...         .+||.+|.||+.++++..+.+..+.|++......+. -..+|-++      ..-+.      .
T Consensus       286 ~~~~~~~~~~~~~~~~~~~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~~-~~~~k~~~~~~~~~~~~~~p~~~~~~  364 (512)
T KOG2744|consen  286 PSKEFQANGPSEEEPAEAEAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPPD-LNLFKVFRLECHQGGDSNIPSALQWK  364 (512)
T ss_pred             cchhhccCCcccccccccccchhhhccccccCceeccCcchhccCccccccCc-ccccccccceeeccCcCcCCchhhee
Confidence            33 33333         688999999999999999999999998755211111 00111111      00000      0


Q ss_pred             ---------------hhH----HHHHHHhhhh-----cccceeeeecCCCCCcccceeeecCCeEEEEEecCCCCccceE
Q 013477          325 ---------------LDS----AEKAALTEAD-----KQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVR  380 (442)
Q Consensus       325 ---------------~~~----~~~~~~~~~~-----k~~d~~v~d~g~~ad~p~iNv~~T~d~~EVyA~~PGl~~~~v~  380 (442)
                                     .+.    ..+..+.+-.     +..-..+.+..|...|+..+..+..++++..+++|+..+.+|.
T Consensus       365 ~~~~~~~~l~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~e~~~~~~al~lt~~~~~~~~~  444 (512)
T KOG2744|consen  365 QVAKDLGLLPNLNSAASSNTKLAYKKSLSENEEYCSINSVNIEFPEALPKEIKVNKQLRELENLLEALALTPSNAKTEIK  444 (512)
T ss_pred             ccccccccccccccccccccccccchhhccccccchhhhccccccccccchhhhccchHHHHHhHHHhccCcccccccee
Confidence                           000    0011111111     1123456788899999888899999999999999999999999


Q ss_pred             EeecCCceEEEecccCCCCCC---CCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEeeccCC
Q 013477          381 VQSDPAGRLVITGEPEQVDNP---WGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFEGS  441 (442)
Q Consensus       381 V~~~~~g~L~IsGer~~~~~~---~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~k~~~  441 (442)
                      |++++.|...+-........+   |...+++++.+-+...+++.++|.....|-.++.+++...
T Consensus       445 ~~~e~ng~~~~gvl~~q~~~~~~~~~~~p~~~~~s~~~~~~~~n~~~~~~~~~~~~~~~~~~~~  508 (512)
T KOG2744|consen  445 VQCEENGTGYSGVLFAQIELPLPSPISAPPSHVNSTSGSSNPENISASHSPLSETYLATPFAHT  508 (512)
T ss_pred             eecccccccccceeeecccccccCCCcCccccccCCCCCCCccccccccCCCccccccCCCccc
Confidence            999999998888888887766   8888999999999999999999999999999999988753

>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain Back     alignment and domain information
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics] Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
1c20_A128 Solution Structure Of The Dna-Binding Domain From T 1e-04
2kk0_A145 Solution Structure Of Dead Ringer-Like Protein 1 (A 1e-04
1kqq_A139 Solution Structure Of The Dead Ringer Arid-Dna Comp 4e-04
>pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding Domain From The Dead Ringer Protein Length = 128 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 149 EQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGE 207
           ++ EF+ ++ SF ++      + P      L+  +L+  V+  GG   V   KLW+++ +
Sbjct: 22  KRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIK 81
Query: 208 SFHPPKTCTTVSWTFRIFYEKALLEYE-KHKRLSGELQLPAS 248
             H P + T+ ++T R  Y K L  YE + K LS   +L A+
Sbjct: 82  GLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAA 123
>pdb|2KK0|A Chain A, Solution Structure Of Dead Ringer-Like Protein 1 (At-Rich Interactive Domain-Containing Protein 3a) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4394c Length = 145 Back     alignment and structure
>pdb|1KQQ|A Chain A, Solution Structure Of The Dead Ringer Arid-Dna Complex Length = 139 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
2lm1_A107 Lysine-specific demethylase LID; structural genomi 1e-25
2jrz_A117 Histone demethylase jarid1C; bright/ARID domain, h 2e-25
2jxj_A96 Histone demethylase jarid1A; ARID domain, chromati 2e-25
1ig6_A107 MRF-2, modulator recognition factor 2; DNA binding 3e-25
2eqy_A122 RBP2 like, jumonji, at rich interactive domain 1B; 4e-25
2rq5_A121 Protein jumonji; developmental protein, nucleus, r 7e-25
1c20_A128 DEAD ringer protein; DNA-binding domain, ARID, AT- 3e-22
2cxy_A125 BAF250B subunit, HBAF250B; DNA-binding domain, str 5e-22
1kkx_A123 Transcription regulatory protein ADR6; ARID, DNA-b 7e-21
2kk0_A145 AT-rich interactive domain-containing protein 3A; 4e-20
2li6_A116 SWI/SNF chromatin-remodeling complex subunit SWI1; 2e-18
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 1e-06
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 1e-06
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 2e-06
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 2e-06
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 2e-06
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 2e-05
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 1e-04
1gme_A151 Heat shock protein 16.9B; small heat shock protein 4e-04
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 4e-04
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 6e-04
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Length = 107 Back     alignment and structure
 Score = 99.6 bits (248), Expect = 1e-25
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 144 EGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWR 203
           E     +  F+ +I  F+       K P    + L+   L R V   GG E  T  + W 
Sbjct: 10  EAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWA 69

Query: 204 QVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238
           +V      P +  +V  T +  YE+ L  +E +  
Sbjct: 70  KVANRMQYP-SSKSVGATLKAHYERILHPFEVYTS 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Length = 117 Back     alignment and structure
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Length = 96 Back     alignment and structure
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Length = 107 Back     alignment and structure
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Length = 122 Back     alignment and structure
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Length = 121 Back     alignment and structure
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Length = 128 Back     alignment and structure
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Length = 125 Back     alignment and structure
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Length = 123 Back     alignment and structure
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 145 Back     alignment and structure
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 116 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
1ig6_A107 MRF-2, modulator recognition factor 2; DNA binding 99.95
2eqy_A122 RBP2 like, jumonji, at rich interactive domain 1B; 99.94
2lm1_A107 Lysine-specific demethylase LID; structural genomi 99.94
2cxy_A125 BAF250B subunit, HBAF250B; DNA-binding domain, str 99.94
2jxj_A96 Histone demethylase jarid1A; ARID domain, chromati 99.94
2kk0_A145 AT-rich interactive domain-containing protein 3A; 99.94
2jrz_A117 Histone demethylase jarid1C; bright/ARID domain, h 99.94
2rq5_A121 Protein jumonji; developmental protein, nucleus, r 99.93
1c20_A128 DEAD ringer protein; DNA-binding domain, ARID, AT- 99.93
2li6_A116 SWI/SNF chromatin-remodeling complex subunit SWI1; 99.93
1kkx_A123 Transcription regulatory protein ADR6; ARID, DNA-b 99.91
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.81
4fei_A102 Heat shock protein-related protein; stress respons 99.77
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.71
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.7
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.68
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.68
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.68
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.67
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.61
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.55
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.53
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.52
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.38
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.33
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 95.62
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 95.33
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 95.16
3igf_A374 ALL4481 protein; two-domained protein consisting o 95.08
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 95.02
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 94.24
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 93.95
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 93.81
2o30_A131 Nuclear movement protein; MCSG, structural genomic 93.31
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 92.9
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 90.49
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 90.14
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 89.9
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Back     alignment and structure
Probab=99.95  E-value=3.4e-29  Score=212.49  Aligned_cols=104  Identities=21%  Similarity=0.412  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHH
Q 013477          148 EEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFY  226 (442)
Q Consensus       148 rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~Y  226 (442)
                      ++++.|+++|.+||+++|+++ ++|.|+|++||||+||++|+++|||++||.+++|.+||+.||++.+++++++.||++|
T Consensus         2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y   81 (107)
T 1ig6_A            2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY   81 (107)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence            589999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhhcCCCCCCCCCCC
Q 013477          227 EKALLEYEKHKRLSGELQLPASSFP  251 (442)
Q Consensus       227 eKyLlpYE~~~~~~G~~~~P~~~~~  251 (442)
                      ++||++||+++.+....+.|+++|+
T Consensus        82 ~k~L~~yE~~~~~~~~~~~p~~~~~  106 (107)
T 1ig6_A           82 ERLILPYERFIKGEEDKPLPPIKPR  106 (107)
T ss_dssp             HHHTTTTHHHHHHHTSSSSCTTCSC
T ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            9999999999988877778877664
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Back     alignment and structure
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Back     alignment and structure
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Back     alignment and structure
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Back     alignment and structure
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Back     alignment and structure
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1c20a_128 a.4.3.1 (A:) DNA-binding domain from the dead ring 4e-28
d1ig6a_107 a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo 4e-27
d1ryua_120 a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 2e-23
d1kkxa_102 a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) { 7e-21
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 4e-04
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 5e-04
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: DNA-binding domain from the dead ringer protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  105 bits (264), Expect = 4e-28
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 145 GTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWR 203
               ++ EF+ ++ SF ++      + P      L+  +L+  V+  GG   V   KLW+
Sbjct: 18  NDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQ 77

Query: 204 QVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR-LSGELQLPAS 248
           ++ +  H P + T+ ++T R  Y K L  YE  K+ LS   +L A+
Sbjct: 78  EIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAA 123
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 102 Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1ryua_120 SWI-SNF complex protein p270, SMARCF1 {Human (Homo 99.94
d1ig6a_107 MRF-2 DNA-binding domain {Human (Homo sapiens) [Ta 99.94
d1c20a_128 DNA-binding domain from the dead ringer protein {F 99.93
d1kkxa_102 Transcription regulator Adr6 (Swi1) {Baker's yeast 99.9
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.71
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.67
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 96.96
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 91.35
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 81.93
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 81.09
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 80.87
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: SWI-SNF complex protein p270, SMARCF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-28  Score=209.01  Aligned_cols=110  Identities=17%  Similarity=0.343  Sum_probs=98.0

Q ss_pred             CcccccccCC-CCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhc
Q 013477          132 NWLNDIEMGE-ADEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESF  209 (442)
Q Consensus       132 ~~~~d~~~~~-~~~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~L  209 (442)
                      .+.+++.++. ++.....+++.|++.|.+||++||+++ ++|+|+|++||||+||++|+++|||++||.+++|.+||+.|
T Consensus         2 ~~~~~~~~~~L~e~~~~~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l   81 (120)
T d1ryua_           2 STTTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNL   81 (120)
T ss_dssp             CCCCSCCCCGGGCSSSCHHHHHHHHHHHHHHHHTTSCSSCCSCCSSSSCCHHHHHHHHHHHTCTTGGGTSSHHHHHHHHT
T ss_pred             CCchhHHHHHHHccCCcHHHHHHHHHHHHHHHHCCCCCCcCCeECCeeccHHHHHHHHHHhcCHHhhcccchHHHHHHHh
Confidence            3455666666 555555678899999999999999999 89999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhHHHHHHhhhhcCC
Q 013477          210 HPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGE  242 (442)
Q Consensus       210 glP~t~TSas~~LR~~YeKyLlpYE~~~~~~G~  242 (442)
                      |+|. ++++++.||++|++||++||+++....+
T Consensus        82 ~~~~-~~~~~~~Lk~~Y~r~L~~yE~~~~~~~~  113 (120)
T d1ryua_          82 NVGT-SSSAASSLKKQYIQCLYAFECKIERGED  113 (120)
T ss_dssp             TSCC-SSHHHHHHHHHHHHHTTTTTTTTTTTTS
T ss_pred             CCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9985 7899999999999999999999875555
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure