Citrus Sinensis ID: 013478

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
ccccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccccccEEEEcccccccccccEEccccccccccccccccccccccccccccccEEEEccEEEEccccccccEEEEEEEEccccccccccHHHHHHHHHHcccccccccEEEccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccc
ccEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHcccccccccEEEEEEEEEEccccEEEEEccccccccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEEHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEcccccEEEEcccHHHcccccccccccccccccHHHHHHHHHHEEcccccHHHHHHHHHHHHccc
maqilapsmqwqmrmpkysniaspmTTKMWSSLLMKQnkkgtnrssAKFRVLALKSEDSTVNRLEDllnlditpytDKIIAEYICQNNtiscwnriggtgidmrsksktiskpvehpselpkwnydgsstgqapgedsevilypqaifkdpfrggnniLVICdtytpagepiptnkrhrAAEIfsnskvsaevpwfgIEQEYTLLQQnvkwplgwpvgaypgpqgpyycgagadksfgrdIADAHYKACLYAGinisgtngevmpgqweyqvgpsvgidagdhiWCSRYLLERITEQAGvvlsldpkpiegdwngagchtnystksmreeggYETIKKAILNLSLRHKEHISaygegnerrltgkhetasidSFSWgvanrgcsirvgretekqgkgyledrrpasnmdpYVVTSLLAETTILWEPTLEAEALAAQKLALNV
maqilapsmqwqMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLalksedstvnrledllnldiTPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTiskpvehpselpkwnydGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDpkpiegdwngagCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAygegnerrltGKHETasidsfswgvanrgcsirvgretekqgkgyledrrpasnmDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTleaealaaqklalNV
**************************************************VLAL****STVNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGI**************************************VILYPQAIFKDPFRGGNNILVICDTYTPAGEPI******RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK****EGGYETIKKAILNLSLRHKEHISAYG*************ASIDSFSWGVANRGCSIRVG********************DPYVVTSLLAETTILWEPTLEAEAL*********
*****A**MQWQ******************************************************LLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALN*
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
*AQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST****GEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKL****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
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MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
O22506432 Glutamine synthetase, chl N/A no 0.977 1.0 0.857 0.0
P15102429 Glutamine synthetase leaf N/A no 0.970 1.0 0.873 0.0
P08281430 Glutamine synthetase leaf N/A no 0.972 1.0 0.846 0.0
Q9XQ94428 Glutamine synthetase leaf N/A no 0.968 1.0 0.841 0.0
Q43127430 Glutamine synthetase, chl yes no 0.972 1.0 0.830 0.0
Q42624428 Glutamine synthetase, chl N/A no 0.968 1.0 0.812 0.0
P14655428 Glutamine synthetase, chl yes no 0.966 0.997 0.769 0.0
P25462423 Glutamine synthetase, chl N/A no 0.920 0.962 0.752 0.0
P13564434 Glutamine synthetase leaf N/A no 0.846 0.861 0.810 0.0
Q42899356 Glutamine synthetase cyto N/A no 0.798 0.991 0.774 1e-172
>sp|O22506|GLNA2_DAUCA Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1 Back     alignment and function desciption
 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/442 (85%), Positives = 408/442 (92%), Gaps = 10/442 (2%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS+QWQMR  K S   S MT+KMW SL +KQNKK   RSS K+R LA+KSED T
Sbjct: 1   MAQILAPSVQWQMRFTKNSTEVSSMTSKMWGSLFLKQNKKAPARSSTKYRALAVKSEDGT 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSEL 120
           +NR+EDLLNLD+TPYTDKIIAEYI        W  IGGTGID+RSKS+TISKPVEHPSEL
Sbjct: 61  INRMEDLLNLDVTPYTDKIIAEYI--------W--IGGTGIDVRSKSRTISKPVEHPSEL 110

Query: 121 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRA 180
           PKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRGGNNILVICDTYTP GEPIPTNKRH+A
Sbjct: 111 PKWNYDGSSTGQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKA 170

Query: 181 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD 240
           A+IFS++KV  EVPWFGIEQEYTL+QQ+V WPLGW VG YPGPQGPYYC AGADKSFGRD
Sbjct: 171 AQIFSDAKVLGEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRD 230

Query: 241 IADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGV 300
           I+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGI+AGDHIWC+RYLLERITEQAGV
Sbjct: 231 ISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGV 290

Query: 301 VLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNER 360
           VL+LDPKPI+GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNER
Sbjct: 291 VLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNER 350

Query: 361 RLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAET 420
           RLTGKHETASIDSFSWGVA+RGCSIRVGR+TEK+GKGYLEDRRPASNMDPYVVT LLAET
Sbjct: 351 RLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAET 410

Query: 421 TILWEPTLEAEALAAQKLALNV 442
           T+LWEPTLEAEALAAQKL+LNV
Sbjct: 411 TLLWEPTLEAEALAAQKLSLNV 432
The light-modulated chloroplast enzyme, encoded by a nuclear gene and expressed primarily in leaves, is responsible for the reassimilation of the ammonia generated by photorespiration.
Daucus carota (taxid: 4039)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2
>sp|P15102|GLNA4_PHAVU Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description
>sp|P08281|GLNA2_PEA Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2 Back     alignment and function description
>sp|Q9XQ94|GLNA2_MEDSA Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43127|GLNA2_ARATH Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1 Back     alignment and function description
>sp|Q42624|GLNAC_BRANA Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1 Back     alignment and function description
>sp|P14655|GLNA2_ORYSJ Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1 Back     alignment and function description
>sp|P25462|GLNAC_MAIZE Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1 Back     alignment and function description
>sp|P13564|GLNA2_HORVU Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2 Back     alignment and function description
>sp|Q42899|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
224107259432 predicted protein [Populus trichocarpa] 0.977 1.0 0.882 0.0
224102579432 predicted protein [Populus trichocarpa] 0.977 1.0 0.880 0.0
255551511432 glutamine synthetase plant, putative [Ri 0.977 1.0 0.886 0.0
40457328432 glutamine synthetase GS58 [Nicotiana att 0.977 1.0 0.871 0.0
193290696432 putative glutamine synthase 2 [Capsicum 0.977 1.0 0.868 0.0
225432496432 PREDICTED: glutamine synthetase leaf iso 0.977 1.0 0.875 0.0
300678122429 plastid glutamine synthetase [Vigna radi 0.970 1.0 0.875 0.0
8928128432 RecName: Full=Glutamine synthetase, chlo 0.977 1.0 0.857 0.0
356555606432 PREDICTED: glutamine synthetase leaf iso 0.977 1.0 0.871 0.0
121353429 RecName: Full=Glutamine synthetase leaf 0.970 1.0 0.873 0.0
>gi|224107259|ref|XP_002314425.1| predicted protein [Populus trichocarpa] gi|222863465|gb|EEF00596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/442 (88%), Positives = 413/442 (93%), Gaps = 10/442 (2%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS QWQMR+ K S  A PMT KMWSSL++KQNKKG  +SSAKFRV ALKSE+ST
Sbjct: 1   MAQILAPSSQWQMRIAKNSAPACPMTAKMWSSLVLKQNKKGIAKSSAKFRVFALKSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSEL 120
           +NR+EDLLNLD+TPYTDK IAEYI        W  IGG+GID+RSKS+TISKP+EHPSEL
Sbjct: 61  INRMEDLLNLDLTPYTDKFIAEYI--------W--IGGSGIDLRSKSRTISKPIEHPSEL 110

Query: 121 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRA 180
           PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILV+CDTYTP GEPIPTNKRHRA
Sbjct: 111 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPQGEPIPTNKRHRA 170

Query: 181 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD 240
           AEIFSN KV  EVPWFGIEQEYTLLQ NVKWPLGWPVG YPGPQGPYYCGAGADKSFGRD
Sbjct: 171 AEIFSNKKVIDEVPWFGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCGAGADKSFGRD 230

Query: 241 IADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGV 300
           I+DAHYKAC+YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIW SRY+LERITEQAGV
Sbjct: 231 ISDAHYKACMYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWISRYILERITEQAGV 290

Query: 301 VLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNER 360
           VLSLDPKPIEGDWNGAGCHTNYSTK+MREEGG+E IKKAILNLSLRHKEHISAYGEGNER
Sbjct: 291 VLSLDPKPIEGDWNGAGCHTNYSTKTMREEGGFEAIKKAILNLSLRHKEHISAYGEGNER 350

Query: 361 RLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAET 420
           RLTGKHETASID+FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPY+VTSLLAET
Sbjct: 351 RLTGKHETASIDTFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYIVTSLLAET 410

Query: 421 TILWEPTLEAEALAAQKLALNV 442
           TIL+EPTLEAEALAAQKL++NV
Sbjct: 411 TILYEPTLEAEALAAQKLSMNV 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102579|ref|XP_002312733.1| predicted protein [Populus trichocarpa] gi|118486227|gb|ABK94955.1| unknown [Populus trichocarpa] gi|222852553|gb|EEE90100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551511|ref|XP_002516801.1| glutamine synthetase plant, putative [Ricinus communis] gi|223543889|gb|EEF45415.1| glutamine synthetase plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|40457328|gb|AAR86719.1| glutamine synthetase GS58 [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|193290696|gb|ACF17656.1| putative glutamine synthase 2 [Capsicum annuum] Back     alignment and taxonomy information
>gi|225432496|ref|XP_002279497.1| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera] gi|297736964|emb|CBI26165.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|300678122|gb|ADK27329.1| plastid glutamine synthetase [Vigna radiata] Back     alignment and taxonomy information
>gi|8928128|sp|O22506.1|GLNA2_DAUCA RecName: Full=Glutamine synthetase, chloroplastic; AltName: Full=GS2; AltName: Full=Glutamate--ammonia ligase; Flags: Precursor gi|2454633|gb|AAB71693.1| glutamine synthetase [Daucus carota] Back     alignment and taxonomy information
>gi|356555606|ref|XP_003546121.1| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|121353|sp|P15102.1|GLNA4_PHAVU RecName: Full=Glutamine synthetase leaf isozyme, chloroplastic; AltName: Full=Glutamate--ammonia ligase; AltName: Full=Isozyme delta; Flags: Precursor gi|21005|emb|CAA31234.1| unnamed protein product [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2165897430 GS2 "glutamine synthetase 2" [ 0.972 1.0 0.803 1.3e-196
TAIR|locus:2151739356 GSR 1 "glutamine synthase clon 0.798 0.991 0.776 2.2e-160
TAIR|locus:2174175356 GLN1;4 "glutamine synthetase 1 0.805 1.0 0.759 2.9e-158
TAIR|locus:2088580354 GLN1.3 "glutamine synthetase 1 0.791 0.988 0.744 1.1e-151
TAIR|locus:2198080353 GLN1;5 "glutamine synthetase 1 0.789 0.988 0.705 2.2e-146
FB|FBgn0001145369 Gs2 "Glutamine synthetase 2" [ 0.812 0.972 0.569 1.5e-108
ASPGD|ASPL0000016342357 glnA [Emericella nidulans (tax 0.787 0.974 0.556 7.2e-107
UNIPROTKB|G4NG12358 MGG_14279 "Glutamine synthetas 0.776 0.958 0.549 1.7e-105
WB|WBGene00001604388 gln-3 [Caenorhabditis elegans 0.735 0.837 0.581 6.7e-104
SGD|S000006239370 GLN1 "Glutamine synthetase (GS 0.744 0.889 0.556 2.9e-103
TAIR|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
 Identities = 355/442 (80%), Positives = 392/442 (88%)

Query:     1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
             MAQILA S   QMR+PK+S++ +  ++K+WSS+++KQ K+  N+    FRVLAL+S++ST
Sbjct:     1 MAQILAASPTCQMRVPKHSSVIAS-SSKLWSSVVLKQKKQSNNKVRG-FRVLALQSDNST 58

Query:    61 VNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSEL 120
             VNR+E LLNLD  PY+D+IIAEYI        W  IGG+GID+RSKS+TI KPVE PSEL
Sbjct:    59 VNRVETLLNLDTKPYSDRIIAEYI--------W--IGGSGIDLRSKSRTIEKPVEDPSEL 108

Query:   121 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRA 180
             PKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRGGNNILVICDT+TPAGEPIPTNKR +A
Sbjct:   109 PKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKA 168

Query:   181 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD 240
             AEIFSN KVS EVPWFGIEQEYTLLQQNVKWPLGWPVGA+PGPQGPYYCG GADK +GRD
Sbjct:   169 AEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRD 228

Query:   241 IADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGV 300
             I+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGIDAGDH+WC+RYLLERITEQAGV
Sbjct:   229 ISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGV 288

Query:   301 VLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNER 360
             VL+LDPKPIEGDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNER
Sbjct:   289 VLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNER 348

Query:   361 RLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAET 420
             RLTGKHETASID FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY+VTSLLAET
Sbjct:   349 RLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAET 408

Query:   421 TILWEPTXXXXXXXXXXXXXNV 442
             T+LWEPT             NV
Sbjct:   409 TLLWEPTLEAEALAAQKLSLNV 430
GO:0003824 "catalytic activity" evidence=IEA
GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA;TAS
GO:0006542 "glutamine biosynthetic process" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA;NAS
GO:0007568 "aging" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019676 "ammonia assimilation cycle" evidence=TAS
GO:0009579 "thylakoid" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
WB|WBGene00001604 gln-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43127GLNA2_ARATH6, ., 3, ., 1, ., 20.83030.97281.0yesno
P00965GLNA3_PHAVU6, ., 3, ., 1, ., 20.74590.80541.0N/Ano
P08281GLNA2_PEA6, ., 3, ., 1, ., 20.84610.97281.0N/Ano
Q43785GLNA3_MEDSA6, ., 3, ., 1, ., 20.76030.79860.9915N/Ano
P14655GLNA2_ORYSJ6, ., 3, ., 1, ., 20.76970.96600.9976yesno
P23712GLNA_LACSA6, ., 3, ., 1, ., 20.77340.79630.9832N/Ano
Q9FMD9GLN14_ARATH6, ., 3, ., 1, ., 20.75950.80541.0nono
Q43066GLNA4_PEA6, ., 3, ., 1, ., 20.75340.80310.9943N/Ano
P25462GLNAC_MAIZE6, ., 3, ., 1, ., 20.75230.92080.9621N/Ano
P12424GLNA_NICPL6, ., 3, ., 1, ., 20.75830.79180.9831N/Ano
P38560GLNA2_MAIZE6, ., 3, ., 1, ., 20.72800.79860.9592N/Ano
P15102GLNA4_PHAVU6, ., 3, ., 1, ., 20.87330.97051.0N/Ano
O22506GLNA2_DAUCA6, ., 3, ., 1, ., 20.85740.97731.0N/Ano
P38563GLNA5_MAIZE6, ., 3, ., 1, ., 20.76510.79630.9859N/Ano
O22504GLNA1_DAUCA6, ., 3, ., 1, ., 20.74510.78730.9886N/Ano
P38561GLNA3_MAIZE6, ., 3, ., 1, ., 20.75480.79860.9915N/Ano
O04867GLNA1_ALNGL6, ., 3, ., 1, ., 20.77960.79860.9915N/Ano
P14636GLNA3_LUPAN6, ., 3, ., 1, ., 20.73910.70580.9904N/Ano
Q42624GLNAC_BRANA6, ., 3, ., 1, ., 20.81220.96831.0N/Ano
P08282GLNA1_PEA6, ., 3, ., 1, ., 20.75480.79860.9943N/Ano
Q4W8D0GLN13_ORYSJ6, ., 3, ., 1, ., 20.72800.80090.9567nono
P38562GLNA4_MAIZE6, ., 3, ., 1, ., 20.75200.79630.9915N/Ano
P13564GLNA2_HORVU6, ., 3, ., 1, ., 20.81030.84610.8617N/Ano
P52782GLNA_LUPLU6, ., 3, ., 1, ., 20.76110.79180.9915N/Ano
P52783GLNA_PINSY6, ., 3, ., 1, ., 20.74380.79860.9887N/Ano
P20478GLNA2_DROME6, ., 3, ., 1, ., 20.56670.81220.9728yesno
Q9XQ94GLNA2_MEDSA6, ., 3, ., 1, ., 20.84160.96831.0N/Ano
Q42899GLNA1_LOTJA6, ., 3, ., 1, ., 20.77410.79860.9915N/Ano
P38559GLNA1_MAIZE6, ., 3, ., 1, ., 20.77280.79410.9831N/Ano
P04078GLNA1_MEDSA6, ., 3, ., 1, ., 20.77410.79860.9915N/Ano
P32289GLNA_VIGAC6, ., 3, ., 1, ., 20.76850.79860.9915N/Ano
Q86ZF9GLNA_NEUCR6, ., 3, ., 1, ., 20.54710.80310.9806N/Ano
P07694GLNA3_PEA6, ., 3, ., 1, ., 20.75610.80310.9943N/Ano
Q06378GLNA3_HORVU6, ., 3, ., 1, ., 20.74070.77140.9578N/Ano
P04770GLNA1_PHAVU6, ., 3, ., 1, ., 20.76300.79860.9915N/Ano
P04771GLNA2_PHAVU6, ., 3, ., 1, ., 20.76300.79860.9915N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.10.998
3rd Layer6.3.1.20.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
PLN03036432 PLN03036, PLN03036, glutamine synthetase; Provisio 0.0
PLN02284354 PLN02284, PLN02284, glutamine synthetase 0.0
pfam00120259 pfam00120, Gln-synt_C, Glutamine synthetase, catal 1e-82
COG0174443 COG0174, GlnA, Glutamine synthetase [Amino acid tr 2e-63
pfam0395184 pfam03951, Gln-synt_N, Glutamine synthetase, beta- 7e-16
TIGR00653459 TIGR00653, GlnA, glutamine synthetase, type I 6e-14
COG3968 724 COG3968, COG3968, Uncharacterized protein related 8e-05
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional Back     alignment and domain information 
 Score =  888 bits (2295), Expect = 0.0
 Identities = 395/442 (89%), Positives = 419/442 (94%), Gaps = 10/442 (2%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS Q QMR+PK S +A+PMT+K+WSSL++KQ KKGT + S KFRVLAL+SE+ST
Sbjct: 1   MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSEL 120
           VNR+EDLLNLD TPYTD+IIAEYI        W  IGG+GID+RSKS+TISKPVEHPSEL
Sbjct: 61  VNRVEDLLNLDTTPYTDRIIAEYI--------W--IGGSGIDLRSKSRTISKPVEHPSEL 110

Query: 121 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRA 180
           PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRA
Sbjct: 111 PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRA 170

Query: 181 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD 240
           AEIFSN KV  EVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD
Sbjct: 171 AEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD 230

Query: 241 IADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGV 300
           I+DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRY+LERITEQAGV
Sbjct: 231 ISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGV 290

Query: 301 VLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNER 360
           VL+LDPKPIEGDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNER
Sbjct: 291 VLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNER 350

Query: 361 RLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAET 420
           RLTGKHETASID+FSWGVANRGCSIRVGR+TEK+GKGYLEDRRPASNMDPY+VTSLLAET
Sbjct: 351 RLTGKHETASIDTFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAET 410

Query: 421 TILWEPTLEAEALAAQKLALNV 442
           TILWEPTLEAEALAAQKL+LNV
Sbjct: 411 TILWEPTLEAEALAAQKLSLNV 432

Length = 432
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase Back     alignment and domain information
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain Back     alignment and domain information
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain Back     alignment and domain information
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I Back     alignment and domain information
>gnl|CDD|226477 COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
PLN03036432 glutamine synthetase; Provisional 100.0
PLN02284354 glutamine synthetase 100.0
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 100.0
COG0174443 GlnA Glutamine synthetase [Amino acid transport an 100.0
TIGR00653460 GlnA glutamine synthetase, type I. Alternate name: 100.0
PRK09469469 glnA glutamine synthetase; Provisional 100.0
TIGR03105435 gln_synth_III glutamine synthetase, type III. This 100.0
PF00120259 Gln-synt_C: Glutamine synthetase, catalytic domain 100.0
COG3968 724 Uncharacterized protein related to glutamine synth 99.74
PF0395184 Gln-synt_N: Glutamine synthetase, beta-Grasp domai 99.55
TIGR02050287 gshA_cyan_rel uncharacterized enzyme. This family 98.6
PRK13517 373 carboxylate-amine ligase; Provisional 98.44
PRK13516373 gamma-glutamyl:cysteine ligase; Provisional 98.4
PRK13515 371 carboxylate-amine ligase; Provisional 98.17
PLN02611 482 glutamate--cysteine ligase 97.87
PRK13518 357 carboxylate-amine ligase; Provisional 97.55
TIGR01436 446 glu_cys_lig_pln glutamate--cysteine ligase, plant 97.47
TIGR02048 376 gshA_cyano glutamate--cysteine ligase, cyanobacter 97.33
PF04107288 GCS2: Glutamate-cysteine ligase family 2(GCS2); In 97.32
COG2170369 Uncharacterized conserved protein [Function unknow 96.99
TIGR03444 390 gshA_related glutamate--cysteine ligase family pro 95.07
>PLN03036 glutamine synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-126  Score=986.42  Aligned_cols=432  Identities=91%  Similarity=1.475  Sum_probs=411.3

Q ss_pred             CCccCCCCcceeeecccccCCCCCchhhhhhhHHHHHhhccCcccCcceEEEEeecchhHHHHHHHhhcCCCCCCCccee
Q 013478            1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKII   80 (442)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (442)
                      |||||+||+||||||+|.++.+.|+++++|+|+++||+|++......+||++++........++++|++|+..++++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (432)
T PLN03036          1 MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENSTVNRVEDLLNLDTTPYTDRII   80 (432)
T ss_pred             CCcccccccccccCCCCCCCcccccccceecccchhhhhhhhhhcccceeeeeccccchhhhhHHHHhhhcccccCCeEE
Confidence            99999999999999999999999999999999999999998877788999999776655578899999998888999999


Q ss_pred             EEeecccCcceeeEeecccccCCCceeeeeeCCCCCCCCCCccccccCCCCCCCCCCccEEEEeEeeeecCCCCCCeEEE
Q 013478           81 AEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILV  160 (442)
Q Consensus        81 ~~yi~~~~~i~~w~~idg~g~DlrGk~r~~~~p~~~~~~l~~~~fDGSs~g~a~~~~sD~~L~Pd~~~~~P~~~~~~a~V  160 (442)
                      ||||        |  |||+|+|||||+|++.+|+++++++|+|+|||||++|+++++||++|+||+++++||+++++++|
T Consensus        81 ~~yi--------w--~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~V  150 (432)
T PLN03036         81 AEYI--------W--IGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILV  150 (432)
T ss_pred             EEEE--------E--eCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEE
Confidence            9999        9  99999999999999999999999999999999999999999999999999999999987779999


Q ss_pred             EEEeecCCCCCCCCCHHHHHHHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCceeecccChhHHHH
Q 013478          161 ICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD  240 (442)
Q Consensus       161 lcd~~~~dG~P~~~~pR~~Lk~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p~~~g~yy~~~~~~~~~~~d  240 (442)
                      +||+|++||+|++.|||+.|++++++++..|+++|+|+|+|||||+.+..++.|||.+++|.++++|||+.+.+..+.++
T Consensus       151 lcd~y~~dG~P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~~~~~~  230 (432)
T PLN03036        151 ICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRD  230 (432)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhhhhHHH
Confidence            99999999999999999999999999988999999999999999987544677898878999999999999998888899


Q ss_pred             HHHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecccCCCCCCCCceeee
Q 013478          241 IADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHT  320 (442)
Q Consensus       241 i~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GSG~H~  320 (442)
                      |+++|+++|+++||+|+++|+|+|||||||+++|+++++|||++|++|++||+||++||++|||||||+.++|+|||||+
T Consensus       231 i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~GSGmHi  310 (432)
T PLN03036        231 ISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHT  310 (432)
T ss_pred             HHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987799999999


Q ss_pred             eccccccccCCchhhHHHHHHhhHHHHHHHHhcccccccccCCCCCCCCCCCceeeccCCCcceeeecccCCCCCccEEE
Q 013478          321 NYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLE  400 (442)
Q Consensus       321 h~Sl~~~~~~~G~~~~~~~iaGL~L~H~~al~a~~~nsYkRL~~~~eap~~~~~sWG~~NR~a~IRIp~~~~~~~~~r~E  400 (442)
                      |+||+++++++|.+.++++++||+|+|++||+||++||||||+|++|||+|++++||++||+++||||......+++|||
T Consensus       311 H~Sl~d~r~~gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~~~~~~~~riE  390 (432)
T PLN03036        311 NYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRDTEKKGKGYLE  390 (432)
T ss_pred             EechhhccccchHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCCCCCCcccEEE
Confidence            99999988767889999999998899999999999999999999999988889999999999999999877544578999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhcCCCCcHHHHHHHhhhhccC
Q 013478          401 DRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV  442 (442)
Q Consensus       401 ~R~pda~aNPYLv~Aail~agl~G~~~~~~~~~~~~~~~~~~  442 (442)
                      +|+||++||||||+|+|+.|+++.+|+||+|+||||||+|||
T Consensus       391 ~R~pda~aNPYLv~aai~~t~~~~~~~~~~~~~~~~~~~~~~  432 (432)
T PLN03036        391 DRRPASNMDPYIVTSLLAETTILWEPTLEAEALAAQKLSLNV  432 (432)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHhcCCcchhHHHHHhhhhccCC
Confidence            999999999999999999999999999999999999999997

>PLN02284 glutamine synthetase Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00653 GlnA glutamine synthetase, type I Back     alignment and domain information
>PRK09469 glnA glutamine synthetase; Provisional Back     alignment and domain information
>TIGR03105 gln_synth_III glutamine synthetase, type III Back     alignment and domain information
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6 Back     alignment and domain information
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6 Back     alignment and domain information
>TIGR02050 gshA_cyan_rel uncharacterized enzyme Back     alignment and domain information
>PRK13517 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional Back     alignment and domain information
>PRK13515 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PLN02611 glutamate--cysteine ligase Back     alignment and domain information
>PRK13518 carboxylate-amine ligase; Provisional Back     alignment and domain information
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type Back     alignment and domain information
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative Back     alignment and domain information
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6 Back     alignment and domain information
>COG2170 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03444 gshA_related glutamate--cysteine ligase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
2d3a_A356 Crystal Structure Of The Maize Glutamine Synthetase 1e-169
3fky_A370 Crystal Structure Of The Glutamine Synthetase Gln1d 1e-109
2uu7_A381 Crystal Structure Of Apo Glutamine Synthetase From 1e-107
2ojw_A384 Crystal Structure Of Human Glutamine Synthetase In 1e-105
2bvc_A486 Crystal Structure Of Mycobacterium Tuberculosis Glu 6e-06
1hto_A477 Crystallographic Structure Of A Relaxed Glutamine S 7e-06
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  590 bits (1522), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 276/363 (76%), Positives = 319/363 (87%), Gaps = 10/363 (2%)
Query: 64  LEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKW 123
           L DL+NL+++  T+KIIAEYI        W  IGG+G+D+RSK++T+  PV  PS+LPKW
Sbjct: 4   LTDLVNLNLSDTTEKIIAEYI--------W--IGGSGMDLRSKARTLPGPVTDPSKLPKW 53
Query: 124 NYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEI 183
           NYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+I
Sbjct: 54  NYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKI 113
Query: 184 FSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIAD 243
           FS+ +V+AE PW+GIEQEYTLLQ++  WPLGWP+G +PGPQGPYYCG GA+KSFGRDI D
Sbjct: 114 FSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVD 173
Query: 244 AHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 303
           AHYKACLYAGINISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++
Sbjct: 174 AHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVT 233
Query: 304 LDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLT 363
            DPKPI GDWNGAG HTNYST+SMR+EGGYE IK AI  L LRHKEHI+AYGEGNERRLT
Sbjct: 234 FDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLT 293
Query: 364 GKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 423
           G+HETA I++FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+
Sbjct: 294 GRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIV 353
Query: 424 WEP 426
           W+P
Sbjct: 354 WKP 356
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370 Back     alignment and structure
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381 Back     alignment and structure
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384 Back     alignment and structure
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine Synthetase In Complex With A Transition State Mimic Length = 486 Back     alignment and structure
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine Synthetase From Mycobacterium Tuberculosis Length = 477 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 0.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 0.0
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 0.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 5e-11
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 4e-09
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 2e-08
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 3e-07
2bvc_A486 Glutamine synthetase 1; ligase, transition state m 9e-07
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 1e-06
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356 Back     alignment and structure
 Score =  570 bits (1471), Expect = 0.0
 Identities = 275/364 (75%), Positives = 318/364 (87%), Gaps = 10/364 (2%)

Query: 63  RLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPK 122
            L DL+NL+++  T+KIIAEYI           IGG+G+D+RSK++T+  PV  PS+LPK
Sbjct: 3   CLTDLVNLNLSDTTEKIIAEYIW----------IGGSGMDLRSKARTLPGPVTDPSKLPK 52

Query: 123 WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAE 182
           WNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+
Sbjct: 53  WNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAK 112

Query: 183 IFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIA 242
           IFS+ +V+AE PW+GIEQEYTLLQ++  WPLGWP+G +PGPQGPYYCG GA+KSFGRDI 
Sbjct: 113 IFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIV 172

Query: 243 DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVL 302
           DAHYKACLYAGINISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV+
Sbjct: 173 DAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVV 232

Query: 303 SLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRL 362
           + DPKPI GDWNGAG HTNYST+SMR+EGGYE IK AI  L LRHKEHI+AYGEGNERRL
Sbjct: 233 TFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRL 292

Query: 363 TGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTI 422
           TG+HETA I++FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI
Sbjct: 293 TGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTI 352

Query: 423 LWEP 426
           +W+P
Sbjct: 353 VWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384 Back     alignment and structure
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370 Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421 Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729 Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Length = 473 Back     alignment and structure
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A* 1htq_A* Length = 486 Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 100.0
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 100.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 100.0
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 100.0
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 100.0
4acf_A486 Glutamine synthetase 1; ligase, nucleotide-binding 100.0
4hpp_A443 Probable glutamine synthetase; glutamine synthase 100.0
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 100.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 100.0
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 100.0
1r8g_A 372 Hypothetical protein YBDK; structural genomics, un 98.09
2gwd_A 449 Glutamate cysteine ligase; disulfide bridges, glut 97.96
3ln6_A 750 Glutathione biosynthesis bifunctional protein GSH; 94.29
3ln7_A 757 Glutathione biosynthesis bifunctional protein GSH; 87.18
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.8e-99  Score=775.07  Aligned_cols=349  Identities=55%  Similarity=1.022  Sum_probs=307.4

Q ss_pred             HHHHHhhcCCCCCCCcceeEEeecccCcceeeEeecccccCCCceeeeeeCCCCCCCCCCccccccCCCCCCCCCCccEE
Q 013478           62 NRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVI  141 (442)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~yi~~~~~i~~w~~idg~g~DlrGk~r~~~~p~~~~~~l~~~~fDGSs~g~a~~~~sD~~  141 (442)
                      ..|++||+|   ++.++++++|+        |  +|++| .+|||++++...++.++++|+|+|||||++|+++++||++
T Consensus        10 ~~~~~~~~l---~~~~i~~v~~~--------~--~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~   75 (370)
T 3fky_A           10 QILQKYLEL---DQRGRIIAEYV--------W--IDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIY   75 (370)
T ss_dssp             --------------CCCEEEEEE--------E--ECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EE
T ss_pred             HHHHHHhCc---ccCCeEEEEEE--------E--EcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCee
Confidence            557899999   78899999999        9  99999 7999999988777888889999999999999999999999


Q ss_pred             EEeEeeeecCCCCCCeEEEEEEeecCCCCCCCCCHHHHHHHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCCC
Q 013478          142 LYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYP  221 (442)
Q Consensus       142 L~Pd~~~~~P~~~~~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p  221 (442)
                      |+||+++++||+++++++|+||++++||+|++.|||++|++++++++  |+++++|+|+|||||+.+ ..+.+||.+++|
T Consensus        76 l~Pdt~~~~Pw~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~-~~~~~~p~~~~p  152 (370)
T 3fky_A           76 LKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMY-DDVYGWPKGGYP  152 (370)
T ss_dssp             EEEEEEEECTTTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTT-SSBTTCCTTSBC
T ss_pred             EeeeEEEEcCCCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccC-CCcccCCCCCcc
Confidence            99999999999997799999999999999999999999999999876  999999999999999987 457899999999


Q ss_pred             CCCCCceeecccChhHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcE
Q 013478          222 GPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV  301 (442)
Q Consensus       222 ~~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~  301 (442)
                      .++|+|||..+.+..+.++++++|+++|+++||+|+++|||++||||||+++|++++++||+++++|++||+||++||+.
T Consensus       153 ~~~g~yy~~~~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~  232 (370)
T 3fky_A          153 APQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIK  232 (370)
T ss_dssp             SCSSSCTTCCSTTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcE
Confidence            99999999988777677999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccCCCCCCCCceeeeeccccccccCCchhhHHHHHHhhHHHHHHHHhcccccccccCCCCCCCCCCCceeeccCCC
Q 013478          302 LSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANR  381 (442)
Q Consensus       302 aTFmPKP~~g~~~GSG~H~h~Sl~~~~~~~G~~~~~~~iaGL~L~H~~al~a~~~nsYkRL~~~~eap~~~~~sWG~~NR  381 (442)
                      |||||||+.|+|+|||||+|+|||++++++|++.+++||+||.++|+++|++|+.||||||+|++|||++.+++||++||
T Consensus       233 ATFmpKP~~gd~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NR  312 (370)
T 3fky_A          233 ISFHPKPLKGDWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANR  312 (370)
T ss_dssp             EECCSCSSSSSSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCT
T ss_pred             EEEcccccCCCCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCC
Confidence            99999999966899999999999998777888889999999955999999999999999999999999976799999999


Q ss_pred             cceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCCC
Q 013478          382 GCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT  427 (442)
Q Consensus       382 ~a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G~~~  427 (442)
                      +|+||||......+++|||+|+||++|||||++|+||+|||+|++.
T Consensus       313 sa~iRIp~~~~~~~~~riE~R~pda~aNPYLa~Aailaagl~Gi~~  358 (370)
T 3fky_A          313 GSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDN  358 (370)
T ss_dssp             TSSEEECHHHHHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBTT
T ss_pred             ceeEEecCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcCccc
Confidence            9999999865433357999999999999999999999999999853
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Back     alignment and structure
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Back     alignment and structure
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A* Back     alignment and structure
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Back     alignment and structure
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Back     alignment and structure
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1f52a2368 d.128.1.1 (A:101-468) Glutamine synthetase, C-term 5e-05
d1f52a1100 d.15.9.1 (A:1-100) Glutamine synthetase, N-termina 0.002
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 39/260 (15%)

Query: 191 AEVPWFGIEQEYTLLQQNVKW-----------------------PLGWPVGAYPGPQGPY 227
           A+   FG E E+ L   ++++                         G   G  PG +G Y
Sbjct: 21  ADTVLFGPEPEFFLFD-DIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 79

Query: 228 YCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWC 286
           +     D    +DI           G+ +   + EV   GQ E     +      D I  
Sbjct: 80  FPVPPVD--SAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQI 137

Query: 287 SRYLLERITEQAGVVLSLDPKPIEGDWNGAG-CHTNYSTK-----SMREEGGYETIKKAI 340
            +Y++  +  + G   +  PKP+ GD      CH + +       S  +  G        
Sbjct: 138 YKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYY 197

Query: 341 LNLSLRHKEHISAYG---EGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKG 397
           +   ++H + I+A       + +RL   +E   + ++S    NR  SIR+      + + 
Sbjct: 198 IGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSAR--NRSASIRIPVVASPKAR- 254

Query: 398 YLEDRRPASNMDPYVVTSLL 417
            +E R P    +PY+  + L
Sbjct: 255 RIEVRFPDPAANPYLCFAAL 274
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1f52a2368 Glutamine synthetase, C-terminal domain {Salmonell 100.0
d2bvca2374 Glutamine synthetase, C-terminal domain {Mycobacte 100.0
d1f52a1100 Glutamine synthetase, N-terminal domain {Salmonell 99.52
d2bvca1100 Glutamine synthetase, N-terminal domain {Mycobacte 99.51
d1r8ga_ 368 Carboxylate-amine ligase YbdK {Escherichia coli [T 97.74
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=9.9e-63  Score=500.61  Aligned_cols=246  Identities=22%  Similarity=0.287  Sum_probs=211.1

Q ss_pred             CCCHHHHHHHHHHhhhcCCccc--eEeeeeeEEEecCCC---------------C-------CCCCCCCCCCCCCCCCce
Q 013478          173 PTNKRHRAAEIFSNSKVSAEVP--WFGIEQEYTLLQQNV---------------K-------WPLGWPVGAYPGPQGPYY  228 (442)
Q Consensus       173 ~~~pR~~Lk~~~~~l~~~G~~~--~~G~E~EF~L~~~~~---------------~-------~p~g~p~~~~p~~~g~yy  228 (442)
                      ..|||++|||+++++++.|+.+  .||+|+|||||+...               .       ...++..+..+..++.||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            3699999999999999999964  669999999996410               0       011112223445677888


Q ss_pred             eecccChhHHHHHHHHHHHHHHHcCCceeeecCCCC-CCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEeccc
Q 013478          229 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK  307 (442)
Q Consensus       229 ~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~-pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPK  307 (442)
                      +....+.  ..++++++++.|+.+||+|+++|+|++ ||||||++.|.++++|||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            8888776  367888888889999999999999999 6999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeeeeccccccc-------cCCchh-hHHHHHHhhHHHHHHHHhcccc---cccccCCCCCCCCCCCceee
Q 013478          308 PIEGDWNGAGCHTNYSTKSMR-------EEGGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSW  376 (442)
Q Consensus       308 P~~g~~~GSG~H~h~Sl~~~~-------~~~G~~-~~~~~iaGL~L~H~~al~a~~~---nsYkRL~~~~eap~~~~~sW  376 (442)
                      |+.+. +|||+|+|+||++..       +.+|++ ..++||+|| |+|++++++|++   ||||||+|++|||+  +++|
T Consensus       159 P~~~~-~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGl-l~~~~~~~al~~PtvNSYkRl~~~~~aP~--~~~W  234 (368)
T d1f52a2         159 PMFGD-NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAPV--MLAY  234 (368)
T ss_dssp             SSTTS-CCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCCC--EEEE
T ss_pred             cCCCC-CCcceeEEEEeccCCCcccccccccccCHHHHHHHHHH-HHhhHHHHHHHCCCchHHhhccCCCcCCc--eeee
Confidence            99995 999999999999742       123454 447899998 999999999985   99999999999999  9999


Q ss_pred             ccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 013478          377 GVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE  425 (442)
Q Consensus       377 G~~NR~a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G~  425 (442)
                      |.+||+++||||.... +..+|||+|.||++|||||++|++|+||++|+
T Consensus       235 g~~NR~a~iRi~~~~~-~~~~riE~R~~da~aNPYL~lAa~laagl~Gi  282 (368)
T d1f52a2         235 SARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDGI  282 (368)
T ss_dssp             ESSCTTEEEECCCCSC-GGGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccCccccceeecccCC-CccceEEecCCCccHHHHHHHHHHHHHhhhhh
Confidence            9999999999996432 24679999999999999999999999999993
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure