Citrus Sinensis ID: 013482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MALVSASTERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPTCRVLLHV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHcccccccccEEEEEEEEEEcccccccEEEEEEccEEEEEccccccEEEEEEEcccEEEEEEcccccccccEEEEEEccccEEEcccccHHHHHHHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHcccccHHHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEEcccccccEEEEEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEEcccccccEEEEEEEEEEEEEcccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHccEEEEccEEEEEcHcccEEEEEEEEHHHEEEEEEHHHcEEcccEEEEEEccccEHEHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHEcccccHHHHHHHHHHHccccEEEcccccccccccEEEEEEEEEcccccccccEEEEEEEEEEEccccEEEEEEEEEccccccccEEEEEEEEEEEEcccccccEEEEEEEEEEEEccccHHHHHHHHHHHHcccccEEEEEc
Coil and Loop (DISEMBL)
malvsasterinlcgptdpsssrstseatssanvscaadppdrnvqfstspipngdvevqsSVTLRSEEYRqlfrlpseevlVQDFNCAFQESILLQGHMYLFVHFICFYsnifgfetkkiipfyevTAVRraktagifpNAIEIFAAGKKYFFASFLSRDEAFKLITDgwlqhgsgslasaeqqdsssetsspqngpvviekvnccsadpiaksdsiireedlssdsklpanvemtpvemqddnveqdfepvldtdslhpiktsswniensdapkipecyTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHrkcgdkefkctswhrhyefgysrdlsfqhpikvyfgakfgscketqkfrvyrnshlvietsqevhdvpygdyfrvEGLWdvmrddggskegcILRVYVNVAFSKKTVWKGLPLLIHLLIsptcrvllhv
Flexible Loop (DISEMBL)
MALVSAsterinlcgptdpsssrstsEATSSANVSCAADPPDRNVqfstspipngdvevQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSssetsspqngpVVIEKVNCCSADPiaksdsiireedlssdsklpaNVEMTPVEMQDDNVEQDFEPVLDTDSLHPiktsswniensdapkiPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVietsqevhdvpyGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHllisptcrvllhv
Low Complexity Region (SEG)
MALVSASTERINLCGPTDPsssrstseatssaNVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPTCRVLLHV
Disordered region (IsUnstruct)
*********************************************************************YRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQH*************************VIEKVNCCSA*********************************************************WNI*****PKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPTCRVLL**
Disordered Region (DISOPRED)
********************************************************************EYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHG**************************E**********************SSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFK*********FGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPTCRVLLHV
Disordered Region (DISEMBL)
*********RINLC***********************ADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS********************GPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPTCRVLLHV
Disordered Region (DISPRO)
*******************************************************DVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHG****************************************************************************************************KIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPTCRVLLHV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALVSASTERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPTCRVLLHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q3KR56	723	GRAM domain-containing pr	yes	no	0.239	0.146	0.495	4e-23
Q96CP6	724	GRAM domain-containing pr	yes	no	0.239	0.146	0.495	4e-23
Q8VEF1	722	GRAM domain-containing pr	yes	no	0.239	0.146	0.495	4e-23
Q5RC33	662	GRAM domain-containing pr	no	no	0.780	0.521	0.277	5e-23
Q8IYS0	662	GRAM domain-containing pr	no	no	0.773	0.516	0.280	5e-23
O42976	764	Uncharacterized membrane	yes	no	0.289	0.167	0.384	1e-21
Q06681	1438	GRAM domain-containing pr	yes	no	0.773	0.237	0.267	8e-21
Q3KR37	738	GRAM domain-containing pr	no	no	0.239	0.143	0.420	1e-20
Q80TI0	738	GRAM domain-containing pr	no	no	0.239	0.143	0.420	1e-20
Q6PEM6	445	GRAM domain-containing pr	no	no	0.242	0.240	0.412	6e-19

>sp|Q3KR56|GRM1A_RAT GRAM domain-containing protein 1A OS=Rattus norvegicus GN=Gramd1a PE=2 SV=2

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 66  RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+E++R+LF +LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   I  
Sbjct: 91  RNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQL 150

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
            EVT +++ KTA + PNAI+I    +K+FF SF +RD  F LI   W
Sbjct: 151 KEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 197

Rattus norvegicus (taxid: 10116)

>sp|Q96CP6|GRM1A_HUMAN GRAM domain-containing protein 1A OS=Homo sapiens GN=GRAMD1A PE=1 SV=2

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 66  RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+E++R+LF +LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   I  
Sbjct: 89  RNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQL 148

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
            EVT +++ KTA + PNAI+I    +K+FF SF +RD  F LI   W
Sbjct: 149 KEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 195

Homo sapiens (taxid: 9606)

>sp|Q8VEF1|GRM1A_MOUSE GRAM domain-containing protein 1A OS=Mus musculus GN=Gramd1a PE=2 SV=2

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 66  RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+E++R+LF +LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   I  
Sbjct: 91  RNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQL 150

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
            EVT +++ KTA + PNAI+I    +K+FF SF +RD  F LI   W
Sbjct: 151 KEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 197

Mus musculus (taxid: 10090)

>sp|Q5RC33|GRM1C_PONAB GRAM domain-containing protein 1C OS=Pongo abelii GN=GRAMD1C PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 176/403 (43%), Gaps = 58/403 (14%)

Query: 66  RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+EEYR+ F  LP  E L+ D+ CA Q  ILLQG +YL  +++CFYSNIF +ET   I  
Sbjct: 67  RNEEYRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWETTISIAL 126

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ-HGSGSLASAE 183
             +T + + KTA + PNAI+I    +K+FF SF +RD ++  I   W       SL   E
Sbjct: 127 KNITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQE 186

Query: 184 -----QQDSSSE----TSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPAN- 233
                QQ+  +E        +N  + IE V   S    +  DS  R+E LS      +  
Sbjct: 187 FWQLLQQNYGTELGLNAEEMENLSLSIEDVRPRSPGRSSLDDSGERDEKLSKSISFTSES 246

Query: 234 -VEMTPVEMQDDN----------------VEQDFEPVLD-------TDSLHPIKTSSWNI 269
              ++  E  D N                 ++   P L+       + SL   K    ++
Sbjct: 247 ISRVSETESFDGNSSKGGLGKEESQNEKQTKKSLLPTLEKKLTRVPSKSLDLNKNEYLSL 306

Query: 270 ENS------DAPKIPE--CYTKV-AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKE 320
           E S      D   +PE   + ++     F +  +  + L F+  +  F++ F       +
Sbjct: 307 EKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFT--SSRFMQKFASSRNIID 364

Query: 321 FKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSC-KETQKFRVYRNSH----LVIETSQ 375
              T W    E G  +  +  + I V      G C   T+K  +Y+ S      ++++  
Sbjct: 365 VVSTPW--TAELGGDQLRTMTYTI-VLNSPLTGKCTAATEKQTLYKESREARFYMVDSEV 421

Query: 376 EVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418
             HDVPY DYF     + ++R    SK+ C LRV  ++ + K+
Sbjct: 422 LTHDVPYHDYFYTVDRYCIIR---SSKQKCRLRVSTDLKYRKQ 461

Pongo abelii (taxid: 9601)

>sp|Q8IYS0|GRM1C_HUMAN GRAM domain-containing protein 1C OS=Homo sapiens GN=GRAMD1C PE=2 SV=2

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 175/406 (43%), Gaps = 64/406 (15%)

Query: 66  RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+EEYR+ F  LP  E L+ D+ CA Q  ILLQG +YL  +++CFYSNIF +ET   I  
Sbjct: 67  RNEEYRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWETTISIAL 126

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ-HGSGSLASAE 183
             +T + + KTA + PNAI+I    +K+FF SF +RD ++  I   W       SL   E
Sbjct: 127 KNITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQE 186

Query: 184 -----QQDSSSE----TSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANV 234
                QQ+  +E        +N  + IE V   S    +  DS  R+E      KL  ++
Sbjct: 187 FWQLLQQNYGTELGLNAEEMENLSLSIEDVQPRSPGRSSLDDSGERDE------KLSKSI 240

Query: 235 EMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWN---IENSDAPKIPECYTKVAETNFQM 291
             T   +   +  + F+       L   K  S N    + S  P + +  T+V   +  +
Sbjct: 241 SFTSESISRVSETESFDGNSSKGGLG--KEESQNEKQTKKSLLPTLEKKLTRVPSKSLDL 298

Query: 292 KVEDFYSLFFS--DDTVN-------------FIESFHRKCGDKEFKC--TSWHRHYEFGY 334
              ++ SL  S   D+V+             FI        D+ F+   TS     +F  
Sbjct: 299 NKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFTSSRFMQKFAS 358

Query: 335 SRDL--SFQHPIKVYFGAK---------------FGSC-KETQKFRVYRNSH----LVIE 372
           SR++      P     G                  G C   T+K  +Y+ S      +++
Sbjct: 359 SRNIIDVVSTPWTAELGGDQLRTMTYTIVLNSPLTGKCTAATEKQTLYKESREARFYLVD 418

Query: 373 TSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418
           +    HDVPY DYF     + ++R    SK+ C LRV  ++ + K+
Sbjct: 419 SEVLTHDVPYHDYFYTVNRYCIIR---SSKQKCRLRVSTDLKYRKQ 461

Homo sapiens (taxid: 9606)

>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 10/138 (7%)

Query: 66  RSEEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+ ++ ++F+ LP E+ L+ D+ CA Q  I L G MYL    ICF S+IFG+ T  +IP 
Sbjct: 195 RNRDFHRIFKVLPPEDHLIDDYGCALQRDIFLHGRMYLSESHICFNSSIFGWVTNIVIPV 254

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW---------LQHG 175
            E+ +V +  TA +FPNAI+I     +Y FASF+SRD  ++LI   W         L +G
Sbjct: 255 TEIVSVEKKSTAVVFPNAIQITTLHARYIFASFISRDTTYQLIIAIWKNTHPFLTTLANG 314

Query: 176 SGSLASAEQQDSSSETSS 193
            G + ++    S S   S
Sbjct: 315 HGVMDASGNHHSGSSNQS 332

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06681|YSP2_YEAST GRAM domain-containing protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 155/363 (42%), Gaps = 21/363 (5%)

Query: 66  RSEEYRQLFR---LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKII 122
           ++ E+  LF+   +   E L+ D +CA    ILLQG MY+    I F+SNI G+ +   I
Sbjct: 645 KNSEFHTLFKDCDINPNEKLIVDHSCALSRDILLQGRMYISDAHIGFFSNILGWVSTVFI 704

Query: 123 PFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASA 182
           PF E+  + +  TAGIFPN I I     KY FASF+SRD  F LITD W Q   G     
Sbjct: 705 PFKEIVQIEKKTTAGIFPNGIVIDTLHTKYIFASFMSRDATFDLITDVWNQIILGKKYRN 764

Query: 183 EQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQ 242
              ++   T S  +     +  +      +   D  I   D++S   + A+V     E  
Sbjct: 765 GFGNNDDGTISDSSSAFFDDSDDNDDDGDLDDDDPDINSTDMTSSDDIDADVFN---ESN 821

Query: 243 DDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFS 302
           D    Q     L   + H   T+ +   N+D          V E N    +    +L + 
Sbjct: 822 DLGKNQKSTNYLLGPNKHSPTTADFKPSNNDH--------LVIEANINAPLGKVVNLLYG 873

Query: 303 DDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362
           +D V++ E   +    K F+ +    ++     RD ++  P+    G     C  T    
Sbjct: 874 ED-VSYYERILK--AQKNFEISPIPNNFLTKKIRDYAYTKPLSGSIGPSKTKCLITDTLE 930

Query: 363 VYR-NSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVW 421
            Y    ++ + +  +  DVP G+ F V+ ++    D   S +   L VY +V ++ K+  
Sbjct: 931 HYDLEDYVKVLSITKNPDVPSGNIFSVKTVFLFSWDKNNSTK---LTVYNSVDWTGKSWI 987

Query: 422 KGL 424
           K +
Sbjct: 988 KSM 990

Involved in induction of programmed cell death in response to reactive oxygen species (ROS).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q3KR37|GRM1B_HUMAN GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 72/107 (67%), Gaps = 1/107 (0%)

Query: 66  RSEEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+E++R+LF+ LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   +  
Sbjct: 94  RNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRL 153

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
            ++ ++ + KTA + PNAI++    +K+FF SF +RD  + ++   W
Sbjct: 154 KDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLW 200

Homo sapiens (taxid: 9606)

>sp|Q80TI0|GRM1B_MOUSE GRAM domain-containing protein 1B OS=Mus musculus GN=Gramd1b PE=1 SV=2

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 72/107 (67%), Gaps = 1/107 (0%)

Query: 66  RSEEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+E++R+LF+ LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   +  
Sbjct: 94  RNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRL 153

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
            ++ ++ + KTA + PNAI++    +K+FF SF +RD  + ++   W
Sbjct: 154 KDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLW 200

Mus musculus (taxid: 10090)

>sp|Q6PEM6|GRAM3_MOUSE GRAM domain-containing protein 3 OS=Mus musculus GN=Gramd3 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 2/109 (1%)

Query: 70  YRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTA 129
           ++    +P+EE L Q F CA Q+ IL QG +++  ++ICF+S +FG +TK  IP + VT 
Sbjct: 126 HKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIPAFSVTL 185

Query: 130 VRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITD--GWLQHGS 176
           +++ KTA + PNA+ I     +Y F S LSRD  +KLI    G L++ S
Sbjct: 186 IKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLIKSVCGHLENTS 234

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
225453378	639	PREDICTED: GRAM domain-containing protei	0.938	0.649	0.621	1e-145
255541038	644	conserved hypothetical protein [Ricinus	0.943	0.647	0.6	1e-140
255317086	618	vascular associated death 1 [Glycine max	0.882	0.631	0.589	1e-134
356533291	633	PREDICTED: GRAM domain-containing protei	0.882	0.616	0.571	1e-125
79334443	598	GRAM domain family protein [Arabidopsis	0.934	0.690	0.548	1e-123
297848286	598	hypothetical protein ARALYDRAFT_470058 [	0.929	0.687	0.550	1e-122
449432984	648	PREDICTED: GRAM domain-containing protei	0.837	0.570	0.575	1e-120
147782373	638	hypothetical protein VITISV_044292 [Viti	0.893	0.619	0.503	1e-102
242045694	569	hypothetical protein SORBIDRAFT_02g03369	0.895	0.695	0.466	1e-102
218199639	563	hypothetical protein OsI_26056 [Oryza sa	0.789	0.619	0.509	1e-100

>gi|225453378|ref|XP_002271102.1| PREDICTED: GRAM domain-containing protein 1A [Vitis vinifera] gi|297734616|emb|CBI16667.3| unnamed protein product [Vitis vinifera]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/431 (62%), Positives = 320/431 (74%), Gaps = 16/431 (3%)

Query: 1   MALVSASTERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVE-V 59
           M + S + E++      + S S+S+ ++ S A     +D PDR    + SP P  DV+ +
Sbjct: 1   MEVASETVEKVESSRSMEHSPSKSSLDSASEA-----SDQPDRTDPSNASPNPLKDVDFL 55

Query: 60  QSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETK 119
           QS   L+SEEYRQLFRLP EEVLVQDFNCA QESIL QGHMYLFV +ICFYSNIFGFETK
Sbjct: 56  QSPAALKSEEYRQLFRLPLEEVLVQDFNCALQESILFQGHMYLFVRYICFYSNIFGFETK 115

Query: 120 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSL 179
           +IIPF EVT V+RAKTAGIFPNAIEI A  KKYFFASFLSRDEAFKLI DGWL+H  G  
Sbjct: 116 RIIPFQEVTCVKRAKTAGIFPNAIEILAGEKKYFFASFLSRDEAFKLINDGWLRHSDGVK 175

Query: 180 ASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREED--LSSDSKLPAN---- 233
           A +EQQ+S S+     NG V  E+V   S +P+ + DSI R +D  LS DSKLP++    
Sbjct: 176 AISEQQESLSD-GCLDNGIVADEEVKS-SEEPVNELDSIDRNKDPPLSKDSKLPSDAKDD 233

Query: 234 -VEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMK 292
            V +TP + QD NVEQ+ E V  TDS       +W  ENS APK+PE Y+ VAE  F +K
Sbjct: 234 IVPITPADQQD-NVEQNVESVPITDSSSSGNILTWKQENSVAPKVPEYYSNVAEAKFPIK 292

Query: 293 VEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKF 352
           VE+F++ FFSDD V+FIESFH++CGDKEF+CTSW  H +FG++RD SFQHPIK+YFGAKF
Sbjct: 293 VEEFFTFFFSDDAVDFIESFHKRCGDKEFRCTSWSPHDKFGHARDKSFQHPIKLYFGAKF 352

Query: 353 GSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVN 412
           GSC+E QKFRVY+NSHL+IETSQEV+DVPYGDYF VEGLW+V  D   S  GCILRVYVN
Sbjct: 353 GSCREAQKFRVYKNSHLIIETSQEVNDVPYGDYFTVEGLWNVESDGDESNGGCILRVYVN 412

Query: 413 VAFSKKTVWKG 423
           VAFSKKT+WKG
Sbjct: 413 VAFSKKTMWKG 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541038|ref|XP_002511583.1| conserved hypothetical protein [Ricinus communis] gi|223548763|gb|EEF50252.1| conserved hypothetical protein [Ricinus communis]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/435 (60%), Positives = 327/435 (75%), Gaps = 18/435 (4%)

Query: 1   MALVSASTERINLCGPTDPSSSRSTS----EATSSANVSCAADPPDRNVQFSTSPIPNGD 56
           MA+   + ERI    P + S+S+S S    E  S A +SC AD PDR+    +SP PN D
Sbjct: 1   MAVAPDTAERIGSL-PMESSASKSASVLDYEPPSPATISCDADSPDRSDLSDSSPNPNRD 59

Query: 57  VEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGF 116
            E+Q++  LR+EEYRQLFRLP EE +VQDFNCAFQESILLQGHMYLF H+ICFYSNIFGF
Sbjct: 60  FEIQAA--LRNEEYRQLFRLPPEEAIVQDFNCAFQESILLQGHMYLFSHYICFYSNIFGF 117

Query: 117 ETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS 176
           ETKK+IPF EV++V+RAKTAGIFPNAIEIFA  +KYFFASFLSRDEAFKLI DGWLQ  +
Sbjct: 118 ETKKVIPFIEVSSVKRAKTAGIFPNAIEIFAGERKYFFASFLSRDEAFKLINDGWLQCVN 177

Query: 177 GSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREED--LSSDSKLPA-- 232
           G+ A  E+Q+S    SS  +  ++IEKVN  S   I + DS  R+ D  LS+D  L A  
Sbjct: 178 GARAITEEQESMISGSSSLDNGIIIEKVN--SFRGINELDSDDRDNDVSLSNDYMLSAPS 235

Query: 233 --NVEMTPVEMQD--DNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETN 288
              +E  P  + +  DNV++D EPV D  +     TS WN E+++ P+I + YT+V ET 
Sbjct: 236 AVEIERAPERLTEIKDNVKKDVEPV-DYITSSSSTTSIWNEEDAEPPEIRKSYTRVGETK 294

Query: 289 FQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF 348
           F +KVE+F++ FFSDD  NFIESFH++CGDKEF+C+ W    + G++R++SFQHPIK+YF
Sbjct: 295 FPIKVEEFFNFFFSDDASNFIESFHQRCGDKEFRCSLWQPQEKLGHTRNVSFQHPIKIYF 354

Query: 349 GAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILR 408
           GAKFGSC+E QKF+VYRNSHLVIETSQE++DVPYGDYFRVEGLWDV++D   S EGC+L+
Sbjct: 355 GAKFGSCQEKQKFQVYRNSHLVIETSQEINDVPYGDYFRVEGLWDVVKDADESNEGCLLQ 414

Query: 409 VYVNVAFSKKTVWKG 423
           +YV+VAFSKKTV+KG
Sbjct: 415 IYVDVAFSKKTVFKG 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255317086|gb|ACU01863.1| vascular associated death 1 [Glycine max]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/414 (58%), Positives = 305/414 (73%), Gaps = 24/414 (5%)

Query: 16  PTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSP--IPNGDVEVQSSVTLRSEEYRQL 73
           P DPS+S S              D  DR+  F++SP    + ++++Q+   L+SEEYRQL
Sbjct: 19  PVDPSASSS-------------PDVADRSDSFNSSPNHFSDTEIQLQTPDVLKSEEYRQL 65

Query: 74  FRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRA 133
           FRLP EEVL++DFNCA QE++L+QGHMYLFV+FICFYSNIFG+ETKKIIPF EVT+VRRA
Sbjct: 66  FRLPLEEVLIEDFNCALQENLLIQGHMYLFVNFICFYSNIFGYETKKIIPFPEVTSVRRA 125

Query: 134 KTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSS 193
           KTAG+FPNAIEI A  KKYFFASFLSRDEAF++I +GW +HG+G++A  EQ++S SE+S 
Sbjct: 126 KTAGLFPNAIEILAGNKKYFFASFLSRDEAFRIINEGWSRHGNGAIAIMEQKESMSESSC 185

Query: 194 PQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVE---MTPVEMQDDNVEQDF 250
            +NG V +E V    +  I  + S+    DLS D+ LP+ V+   +T    +  +V+Q  
Sbjct: 186 QENGFVAVENVK---SSYITNNGSL--STDLSKDTALPSIVDDPLLTEDSAKQCSVKQVA 240

Query: 251 EPVLDTDSLHPIKTS-SWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFI 309
           EP L+ D+ +    S  WN E+ DAP I E YT VA++ F +KVEDF+   FSDD +NF+
Sbjct: 241 EPELNIDAPNAASVSWKWNEEDIDAPSILEAYTCVADSVFPIKVEDFFRYLFSDDALNFL 300

Query: 310 ESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHL 369
           ESF +KCGDK+F+C+SWH   +FGY+R+LSFQHPIK+Y GAKFG C E QKFRVYRNSHL
Sbjct: 301 ESFRQKCGDKDFRCSSWHPQEKFGYARELSFQHPIKIYLGAKFGGCHEVQKFRVYRNSHL 360

Query: 370 VIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKG 423
           VIETSQEV DVPY DYFRVEGLW V RD   SKE C LRVYVNVAFSKKT+WKG
Sbjct: 361 VIETSQEVSDVPYADYFRVEGLWSVERDKDESKECCFLRVYVNVAFSKKTIWKG 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533291|ref|XP_003535199.1| PREDICTED: GRAM domain-containing protein 1A-like [Glycine max]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/427 (57%), Positives = 301/427 (70%), Gaps = 37/427 (8%)

Query: 17  TDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSP--IPNGDVEVQSSVTLRSEEYRQLF 74
            DPS S S   A             +R+  F++SP    + ++++Q+   L+SEEYRQLF
Sbjct: 21  VDPSPSSSPDNAA------------NRSDSFNSSPNHFSDAEIQLQTPDVLKSEEYRQLF 68

Query: 75  RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAK 134
           RLP EEVL++DFNCA QE++L+QGHMYLFV+FICFYSNIFG+ETKKIIPF EVT+VRRAK
Sbjct: 69  RLPQEEVLIEDFNCALQENLLIQGHMYLFVNFICFYSNIFGYETKKIIPFPEVTSVRRAK 128

Query: 135 TAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSP 194
           TAG+FPNAIEI A  KKYFFASFLSRDEAF++I +GW + G+G++A  EQ++S SE+SS 
Sbjct: 129 TAGLFPNAIEILAGNKKYFFASFLSRDEAFRIINEGWSRQGNGAIAIMEQKESMSESSSQ 188

Query: 195 QNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDD----NVEQDF 250
           +NG V +E V   S+D I  + S+    DLS D+ L + V   PV   D     +V+Q  
Sbjct: 189 ENGFVAVENVK--SSD-ITDNGSL--STDLSKDTTLTSIVGDDPVSTADSEKQCSVKQVA 243

Query: 251 EPVLDTDSLHPIKTS-SWNIENSDAPK-------------IPECYTKVAETNFQMKVEDF 296
           EP L+ D+      S  WN E+ DAP              + E YT VA++ F MKVEDF
Sbjct: 244 EPELNNDAPSAASVSWKWNEEDIDAPSNNLMDLNLFSKNAVLEAYTCVADSVFPMKVEDF 303

Query: 297 YSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCK 356
           +   FSDD +NF+ESF +KCGDK+F+C+ WH   +FGY+R+LSFQHPIK+Y GAKFG C 
Sbjct: 304 FRYLFSDDALNFLESFRQKCGDKDFRCSPWHPQEKFGYARELSFQHPIKIYLGAKFGGCH 363

Query: 357 ETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416
           E QKFRVYRNSHLVIETSQEV DVPY DYFRVEGLW V RD   SKE C LRVYVNVAFS
Sbjct: 364 EVQKFRVYRNSHLVIETSQEVSDVPYADYFRVEGLWSVERDKDESKECCTLRVYVNVAFS 423

Query: 417 KKTVWKG 423
           KKT+WKG
Sbjct: 424 KKTIWKG 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79334443|ref|NP_171714.2| GRAM domain family protein [Arabidopsis thaliana] gi|332189265|gb|AEE27386.1| GRAM domain family protein [Arabidopsis thaliana]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/425 (54%), Positives = 302/425 (71%), Gaps = 12/425 (2%)

Query: 1   MALVSAST--ERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVE 58
           MA++S ++    ++L   T    S ++ E  S    S     PDR+   ++SP P+   +
Sbjct: 1   MAMLSTASVSGSVDLPRGTMKVDSSASPEVVSDLPPSSPKGSPDRHDPSTSSPSPSRGGD 60

Query: 59  VQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFET 118
            QS V  +SEEYRQLFRLP++E+LVQDFNCA QESIL+QGHMYLF+H+ICFYSNIFG+ET
Sbjct: 61  NQSEVISKSEEYRQLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFGYET 120

Query: 119 KKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGS 178
           KKIIPF E++ V+RAKTAGIFPNAIEI A GKKYFFASFLSRDEAFKLI DGWL++GS  
Sbjct: 121 KKIIPFAEISCVKRAKTAGIFPNAIEILAGGKKYFFASFLSRDEAFKLIHDGWLEYGS-- 178

Query: 179 LASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTP 238
              A + +     + PQ    V+++    S D   + D  +R+E L   S     V ++ 
Sbjct: 179 ---AVKSEGEILVTEPQVSDGVVKRARS-SMDLANELDIPVRDETLHLSSSSSLPV-ISQ 233

Query: 239 VEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYS 298
             +   +V++  EP +D  + +   T +W  E++DAPK+   +TKVAE  F + VE+F+ 
Sbjct: 234 NGVPPSSVQRHAEPDVDVVAAN---TFNWKPEDTDAPKLSSDFTKVAEAKFSIPVEEFFR 290

Query: 299 LFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKET 358
           LFFSD  V+F+ESFH+ CGDKEF+CTSW  H + G++R++SFQHPIK+YFGAKFG C+E+
Sbjct: 291 LFFSDGAVSFVESFHKNCGDKEFRCTSWQPHEKLGHTRNVSFQHPIKIYFGAKFGGCQES 350

Query: 359 QKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418
           QKFR+YRNSHLVIETSQE+ DVPY DYF VEG+WD+ RD   S EGCIL VYVNVAFSK+
Sbjct: 351 QKFRMYRNSHLVIETSQEISDVPYADYFTVEGVWDLKRDCRDSVEGCILDVYVNVAFSKR 410

Query: 419 TVWKG 423
           TVWKG
Sbjct: 411 TVWKG 415

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848286|ref|XP_002892024.1| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata] gi|297337866|gb|EFH68283.1| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/427 (55%), Positives = 303/427 (70%), Gaps = 16/427 (3%)

Query: 1   MALVSAST--ERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVE 58
           MA++S ++    ++L   T    S ++ E  S    S     PDR+   S+SP P+   +
Sbjct: 1   MAMLSTASVSGSVDLPRGTMKVESSASPEVVSDLPPSSPEGSPDRHDPSSSSPSPSRGGD 60

Query: 59  VQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFET 118
            QS V  +SEEYRQLFRLP++E+LVQDFNCA QESIL+QGHMYLF+H+ICFYSNIFG+ET
Sbjct: 61  NQSEVISKSEEYRQLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFGYET 120

Query: 119 KKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGS 178
           KKIIPF +++ V+RAKTAGIFPNAIEI A GKKYFFASFLSRDEAFKLI DGWL++GS  
Sbjct: 121 KKIIPFADISCVKRAKTAGIFPNAIEILAGGKKYFFASFLSRDEAFKLIHDGWLEYGSPV 180

Query: 179 LASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDL--SSDSKLPANVEM 236
            A  E Q +  + +   +G V   K    S D   + D  +R+E+L  S  S LP    +
Sbjct: 181 KAQGEIQVTEQQVN---DGLV---KRALSSMDLANELDIPLRDENLHLSGISSLPV---I 231

Query: 237 TPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDF 296
           +   +   +V++  EP +D  + +     +W  E+ DAPK+   +TKVAE  F + VE+F
Sbjct: 232 SQNGLPPSSVQRHAEPDVDVVAANNF---NWKPEDIDAPKLSSDFTKVAEAKFSIPVEEF 288

Query: 297 YSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCK 356
           + LFFSD  VNF+ESFH+ CGDKEF+CTSW  H + G++R++SFQHPIK+YFGAKFG C+
Sbjct: 289 FRLFFSDGAVNFVESFHKNCGDKEFRCTSWQPHEKLGHTRNVSFQHPIKIYFGAKFGGCQ 348

Query: 357 ETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416
           E+QKFR+YR+SHLVIETSQE+ DVPY DYF VEG+WD+ RD   S EGCIL VYVNVAF+
Sbjct: 349 ESQKFRMYRDSHLVIETSQEISDVPYADYFTVEGVWDLKRDCRDSIEGCILDVYVNVAFA 408

Query: 417 KKTVWKG 423
           K+TVWKG
Sbjct: 409 KRTVWKG 415

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432984|ref|XP_004134278.1| PREDICTED: GRAM domain-containing protein 1A-like [Cucumis sativus]

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/393 (57%), Positives = 280/393 (71%), Gaps = 23/393 (5%)

Query: 49  TSPIPNG---DVEVQSSVTLRSEEY--------RQLFRLPSEEVLVQDFNCAFQESILLQ 97
           +S  P+G   DVE+Q  +T     Y        RQLFRLP +EVL++DFNCAFQE+IL+Q
Sbjct: 52  SSSSPDGFQEDVEIQILITCALNSYTQRLGKKKRQLFRLPLDEVLIEDFNCAFQENILIQ 111

Query: 98  GHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157
           GHMYLFVH+ICFYSNIFGFETKKIIPF E+TAVR+AKTAGIFPNAIEI    KKYFFASF
Sbjct: 112 GHMYLFVHYICFYSNIFGFETKKIIPFREITAVRKAKTAGIFPNAIEICVGEKKYFFASF 171

Query: 158 LSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDS 217
           LSRDEAF LI DGWLQH  G+ A  ++Q S +E+S  + G + +EK     A  +  SDS
Sbjct: 172 LSRDEAFNLINDGWLQHAKGTEAIMKKQKSINESSRQEIGILGVEK-----AKELDPSDS 226

Query: 218 IIREED--LSSDSKLPANVE--MTPVEMQDDNV--EQDFEPVLDTDSLHPIKTSSWNIEN 271
             R  D  + + S + ANVE    P  +  + +   Q+ EP+LD  +    +T  W  E+
Sbjct: 227 SDRSMDTPILNVSVVQANVEEVNVPTTLPPEPIVATQEAEPILDIHASTSRETLMWKPED 286

Query: 272 SDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE 331
           +DAP +P+ YT+VAE+ F + VEDF+S +FSD  V+F+ S+H KCGDKE KC+ W     
Sbjct: 287 TDAPNVPDYYTQVAESKFPINVEDFFSFYFSDSAVDFVSSYHEKCGDKELKCSLWRHDDM 346

Query: 332 FGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGL 391
           FG++RD+SFQHPIK+YFGAKFG C ETQKFRVYR+SHLVIE +QEV +VPY DYFRVE  
Sbjct: 347 FGHTRDVSFQHPIKIYFGAKFGGCLETQKFRVYRDSHLVIEVTQEVSEVPYSDYFRVEAH 406

Query: 392 WDVMRD-DGGSKEGCILRVYVNVAFSKKTVWKG 423
           W+V +D D  S   CILRVYVNVAFSK+TVWKG
Sbjct: 407 WEVKKDVDDESNNCCILRVYVNVAFSKRTVWKG 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782373|emb|CAN61799.1| hypothetical protein VITISV_044292 [Vitis vinifera]

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/449 (50%), Positives = 271/449 (60%), Gaps = 54/449 (12%)

Query: 27  EATSSANVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDF 86
           E  ++ N     + P+ N   + +   +G    +S   L+SEEYRQLFRLP EEVLVQDF
Sbjct: 8   ELDNAKNKDFTKNKPEENNDQAIAFGIDGVKCTRSPAALKSEEYRQLFRLPLEEVLVQDF 67

Query: 87  NCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIF 146
           NCA QESIL QGHMYLFV +ICFYSNIFGFETK+IIPF EVT V+RAKTAGIFPNAIEI 
Sbjct: 68  NCALQESILFQGHMYLFVRYICFYSNIFGFETKRIIPFQEVTCVKRAKTAGIFPNAIEIL 127

Query: 147 AAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQ-DSSSETSSPQNGPVVIEKVN 205
           A  KKYFFASFLSRDEAFKLI DGWL+H  G  A +EQQ +        Q+    +  V 
Sbjct: 128 AGEKKYFFASFLSRDEAFKLINDGWLRHSDGVKAISEQQYNQKLWVEGSQDNLCEVGVVL 187

Query: 206 CC---------SADPIAKSDSIIREEDLSSDSKLPAN-----VEMTPVEMQDDNVEQDFE 251
            C            PI K   + ++  LS DSKLP++     V +TP + Q DNVEQ+ E
Sbjct: 188 GCLLESWSIGFCGHPIDKVGKLNKDPPLSKDSKLPSDAKDDIVPITPAD-QQDNVEQNVE 246

Query: 252 PVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIES 311
            V  TDS       +W  ENS APK+PE Y+ VAE  F +KVE+F++LFFSDD V+FIES
Sbjct: 247 SVPITDSSSSGNILTWKQENSVAPKVPEYYSNVAEAKFPIKVEEFFTLFFSDDAVDFIES 306

Query: 312 FHRKCGDK----------EFKC-----TSWH---RHYEFGYS--------RDL------- 338
           FH++CGDK          +F C      ++H   +   F +S         DL       
Sbjct: 307 FHKRCGDKVITDHISLSLDFMCLYLPFVAFHIIMKIVSFPWSPCSANKIVDDLVKCGAKH 366

Query: 339 ---SFQHPIKVYFGAKF--GSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWD 393
               F   IKV   + F     KE      Y   HL+IETSQEV+DVPYGDYF VEGLW+
Sbjct: 367 MKKEFLVTIKVNGESLFEENEMKEGVALAFYYLCHLIIETSQEVNDVPYGDYFTVEGLWN 426

Query: 394 VMRDDGGSKEGCILRVYVNVAFSKKTVWK 422
           V  D   S  GCILRVYVNVAFSKKT+WK
Sbjct: 427 VESDGDESNGGCILRVYVNVAFSKKTMWK 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242045694|ref|XP_002460718.1| hypothetical protein SORBIDRAFT_02g033690 [Sorghum bicolor] gi|241924095|gb|EER97239.1| hypothetical protein SORBIDRAFT_02g033690 [Sorghum bicolor]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/439 (46%), Positives = 272/439 (61%), Gaps = 43/439 (9%)

Query: 4   VSASTERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSP--------IPNG 55
           V+AS  R    GPTD     + + + +S     A+ PP  +   S+SP        +   
Sbjct: 6   VAASPSR---AGPTD---ILTAAPSPASPPRRLASAPPAVDASGSSSPDSAHSGDQLSAP 59

Query: 56  DVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFG 115
           D      +  RSEEYR LFRLP +EVLVQDFNCA QE+ILLQGHMYLF+H ICFYSNIFG
Sbjct: 60  DASSSPLLASRSEEYRLLFRLPPDEVLVQDFNCALQENILLQGHMYLFLHHICFYSNIFG 119

Query: 116 FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHG 175
           +ETKKIIP  EVT VR+AKTA IFPNAIEI A  +++FF SFLSRDEAF++I DGW QH 
Sbjct: 120 YETKKIIPLQEVTDVRKAKTAAIFPNAIEIVAGTRRHFFGSFLSRDEAFRIIVDGWEQHV 179

Query: 176 SGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLP-ANV 234
           S +    E+Q++ S +SS +NG V++E                 +E     DS  P  +V
Sbjct: 180 SDARLLLERQETKSASSSEENGYVLLEGA---------------KESKQDEDSSPPDRSV 224

Query: 235 EMTPVEMQDD------NVEQDFEPVLDT---DSLHPIKTSSWNIEN-SDAPKIPECYTKV 284
           + T V    D      N+ + F  V +    D++  I  + +N+E   DAP +PE YT +
Sbjct: 225 DSTAVSSSADGGDSNINISKRFSKVEENGLEDNI--IAVNPFNLEPLDDAPSVPESYTMI 282

Query: 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI 344
            E+ FQ+ VE  ++   SD    F++ FH+KCGDKEF C+ W    + G  RD+SF HPI
Sbjct: 283 TESKFQVPVEVLFNFLLSDGAFGFVDDFHKKCGDKEFSCSKWRIDEQGGLVRDVSFLHPI 342

Query: 345 KVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEG 404
           K+Y GAKFG+C+E QK R+Y+N  L+I+TSQ + D PYGD+F VEG+WDV   D   +  
Sbjct: 343 KIYLGAKFGTCQEVQKLRLYKNRRLMIQTSQSIGDAPYGDHFTVEGIWDV-EQDSLDENC 401

Query: 405 CILRVYVNVAFSKKTVWKG 423
           C LR+Y+NVAFSKKT+++G
Sbjct: 402 CDLRIYINVAFSKKTIFRG 420

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218199639|gb|EEC82066.1| hypothetical protein OsI_26056 [Oryza sativa Indica Group]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/365 (50%), Positives = 247/365 (67%), Gaps = 16/365 (4%)

Query: 66  RSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFY 125
           RSEEYR LFRLP +EVLVQDFNCA QE+ILLQGHMYLF+H ICFYSNIFG+ETKK IP  
Sbjct: 59  RSEEYRLLFRLPPDEVLVQDFNCALQENILLQGHMYLFLHHICFYSNIFGYETKKTIPLQ 118

Query: 126 EVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQ 185
           EVT VR+AKTA IF NAIEI A  K++FF SFLSRDEAF++I +GW QH S +    E+Q
Sbjct: 119 EVTDVRKAKTAAIFHNAIEIIAGTKRHFFGSFLSRDEAFRIIVEGWEQHVSDARLLLERQ 178

Query: 186 DSSSETSSPQNGPVVIEKVNCCSAD----PIAKS---DSIIREEDLSSDSKLPANVEMTP 238
           D+ S  SS +NG V++E       D    P+ +S    ++    + S DS +  N+    
Sbjct: 179 DAKSGNSSDENGYVLLEGAKETKQDDDSSPLDRSVNGTAVTSGSNDSGDSDV--NISKRS 236

Query: 239 VEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYS 298
            E+ ++  E   +      +L+P     ++ E   AP +PE +  + E+ FQ+ VE  ++
Sbjct: 237 SEVLENESE---DKCTAATALNPFILGPFDDE---APNVPEPFALITESKFQVPVEVLFN 290

Query: 299 LFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKET 358
           +  SD +  F++ FH+KCGDKEF+C+ W    + G  RD+SF HPIK+Y GAKFGSC+E 
Sbjct: 291 MLLSDSSFGFLDDFHKKCGDKEFRCSPWRLDEQGGLIRDVSFLHPIKIYLGAKFGSCQEV 350

Query: 359 QKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418
           QK RVY+N HL+I+TSQ++ D PYGD+F VEG+WDV   D   +  C LRVY+NVAFSKK
Sbjct: 351 QKLRVYKNRHLMIQTSQQIGDAPYGDHFTVEGIWDV-EQDSLDESSCYLRVYINVAFSKK 409

Query: 419 TVWKG 423
           T+++G
Sbjct: 410 TIFRG 414

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2205625	598	VAD1 "VASCULAR ASSOCIATED DEAT	0.839	0.620	0.592	7.7e-119
UNIPROTKB|Q96CP6	724	GRAMD1A "GRAM domain-containin	0.239	0.146	0.495	6e-26
MGI|MGI:105490	722	Gramd1a "GRAM domain containin	0.239	0.146	0.495	6.6e-25
RGD|1311022	723	Gramd1a "GRAM domain containin	0.239	0.146	0.495	1.4e-24
WB|WBGene00022593	616	ZC328.3 [Caenorhabditis elegan	0.816	0.586	0.246	4.1e-24
UNIPROTKB|Q8IYS0	662	GRAMD1C "GRAM domain-containin	0.239	0.160	0.457	1.1e-22
UNIPROTKB|Q3KR37	738	GRAMD1B "GRAM domain-containin	0.239	0.143	0.420	2.6e-22
RGD|1305443	733	Gramd1b "GRAM domain containin	0.239	0.144	0.420	4.1e-22
CGD|CAL0001781	1073	orf19.4423 [Candida albicans (	0.239	0.098	0.485	4.7e-22
UNIPROTKB|Q59WE7	1073	CaO19.11901 "Potential GRAM do	0.239	0.098	0.485	4.7e-22

TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 228/385 (59%), Positives = 287/385 (74%)

Query:    41 PDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHM 100
             PDR+   ++SP P+   + QS V  +SEEYRQLFRLP++E+LVQDFNCA QESIL+QGHM
Sbjct:    43 PDRHDPSTSSPSPSRGGDNQSEVISKSEEYRQLFRLPADEILVQDFNCACQESILMQGHM 102

Query:   101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSR 160
             YLF+H+ICFYSNIFG+ETKKIIPF E++ V+RAKTAGIFPNAIEI A GKKYFFASFLSR
Sbjct:   103 YLFIHYICFYSNIFGYETKKIIPFAEISCVKRAKTAGIFPNAIEILAGGKKYFFASFLSR 162

Query:   161 DEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIR 220
             DEAFKLI DGWL++GS     A + +     + PQ    V+++    S D   + D  +R
Sbjct:   163 DEAFKLIHDGWLEYGS-----AVKSEGEILVTEPQVSDGVVKRARS-SMDLANELDIPVR 216

Query:   221 EEDL--SSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIP 278
             +E L  SS S LP  +    V     +V++  EP +D  + +   T +W  E++DAPK+ 
Sbjct:   217 DETLHLSSSSSLPV-ISQNGVP--PSSVQRHAEPDVDVVAAN---TFNWKPEDTDAPKLS 270

Query:   279 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDL 338
               +TKVAE  F + VE+F+ LFFSD  V+F+ESFH+ CGDKEF+CTSW  H + G++R++
Sbjct:   271 SDFTKVAEAKFSIPVEEFFRLFFSDGAVSFVESFHKNCGDKEFRCTSWQPHEKLGHTRNV 330

Query:   339 SFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDD 398
             SFQHPIK+YFGAKFG C+E+QKFR+YRNSHLVIETSQE+ DVPY DYF VEG+WD+ RD 
Sbjct:   331 SFQHPIKIYFGAKFGGCQESQKFRMYRNSHLVIETSQEISDVPYADYFTVEGVWDLKRDC 390

Query:   399 GGSKEGCILRVYVNVAFSKKTVWKG 423
               S EGCIL VYVNVAFSK+TVWKG
Sbjct:   391 RDSVEGCILDVYVNVAFSKRTVWKG 415

GO:0005634 "nucleus" evidence=ISM

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q96CP6 GRAMD1A "GRAM domain-containing protein 1A" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
 Identities = 53/107 (49%), Positives = 73/107 (68%)

Query:    66 RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R+E++R+LF +LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   I  
Sbjct:    89 RNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQL 148

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
              EVT +++ KTA + PNAI+I    +K+FF SF +RD  F LI   W
Sbjct:   149 KEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 195

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:105490 Gramd1a "GRAM domain containing 1A" [Mus musculus (taxid:10090)]

 Score = 263 (97.6 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
 Identities = 53/107 (49%), Positives = 73/107 (68%)

Query:    66 RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R+E++R+LF +LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   I  
Sbjct:    91 RNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQL 150

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
              EVT +++ KTA + PNAI+I    +K+FF SF +RD  F LI   W
Sbjct:   151 KEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 197

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311022 Gramd1a "GRAM domain containing 1A" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 53/107 (49%), Positives = 73/107 (68%)

Query:    66 RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R+E++R+LF +LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   I  
Sbjct:    91 RNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQL 150

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
              EVT +++ KTA + PNAI+I    +K+FF SF +RD  F LI   W
Sbjct:   151 KEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 197

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00022593 ZC328.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 4.1e-24, P = 4.1e-24
 Identities = 99/402 (24%), Positives = 185/402 (46%)

Query:    47 FSTSPIPNGDVE-VQSSVTLRSEEYRQLF----RLPSEEVLVQDFNCAFQESILLQGHMY 101
             F+  P  N  ++ +  S   R+ +++++F     +   +  +  ++CA+Q  IL QG M+
Sbjct:    52 FAEKPDKNIFMKLIHPSYHERNLQFKKIFVDKGLIEENDQFLASYSCAYQREILAQGRMF 111

Query:   102 LFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGK-KYFFASFLSR 160
             +    +CFY+NI G+ET  +IP  E++ V++ K A IFPN+I+I    K KYFFASF++R
Sbjct:   112 ISQFNVCFYANIIGWETTLVIPMKEISLVKKMKAAFIFPNSIQIERDTKEKYFFASFINR 171

Query:   161 DEAFKLITDGWLQ-HGSGSLASAEQQ---------DSSSETSSPQNGPVVIEKVNCCSAD 210
             D++++++T    +  G    A   ++         D +S+  +P +G       N     
Sbjct:   172 DKSYQVLTTAHQKVAGEDEKAMTREEVWDMVYNSEDKNSQNQTPPDGSTPASTKN----- 226

Query:   211 PIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDD--NVEQDF--EPVLDTDSLHPIKTSS 266
                 ++++      S +S +    E + ++  +D  N  Q        D DS     +  
Sbjct:   227 --TSTENMTNLSSRSFNSSISPRTEASTLKNNNDKDNTSQSSTSSDFHDEDSATHF-SEQ 283

Query:   267 WNIENSDAPKIP----ECYTK-VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEF 321
             +  E+    ++P    E + + + +  F++ VE FY L F+D+   F+   ++K    E+
Sbjct:   284 FEQEDEIIEEVPCPCSEHFGRLIMDKEFKVSVEKFYELLFTDN--EFLTMLNQKTKTAEY 341

Query:   322 KCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHD-- 379
                +W R ++   +R  ++   +      K     E Q    Y N    I   +E  +  
Sbjct:   342 VAATWVRDHQGDNTRTCTYTVSLAHAMAPKAIIVNEKQILTHYPNPKQGIMMQKETQNSG 401

Query:   380 VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVW 421
             VPY D F V   + + R    S   C ++V+  V + KK+ W
Sbjct:   402 VPYSDNFTVNCRYCISRTGPTS---CRIKVHGGVMY-KKSTW 439

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|Q8IYS0 GRAMD1C "GRAM domain-containing protein 1C" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 49/107 (45%), Positives = 68/107 (63%)

Query:    66 RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R+EEYR+ F  LP  E L+ D+ CA Q  ILLQG +YL  +++CFYSNIF +ET   I  
Sbjct:    67 RNEEYRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWETTISIAL 126

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
               +T + + KTA + PNAI+I    +K+FF SF +RD ++  I   W
Sbjct:   127 KNITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLW 173

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
 Identities = 45/107 (42%), Positives = 72/107 (67%)

Query:    66 RSEEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R+E++R+LF+ LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   +  
Sbjct:    94 RNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRL 153

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
              ++ ++ + KTA + PNAI++    +K+FF SF +RD  + ++   W
Sbjct:   154 KDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLW 200

GO:0016021 "integral to membrane" evidence=IEA

RGD|1305443 Gramd1b "GRAM domain containing 1B" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
 Identities = 45/107 (42%), Positives = 72/107 (67%)

Query:    66 RSEEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R+E++R+LF+ LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   +  
Sbjct:    89 RNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRL 148

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
              ++ ++ + KTA + PNAI++    +K+FF SF +RD  + ++   W
Sbjct:   149 KDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLW 195

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001781 orf19.4423 [Candida albicans (taxid:5476)]

 Score = 270 (100.1 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 52/107 (48%), Positives = 72/107 (67%)

Query:    66 RSEEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R++E+ Q F+ LP++E L+ DF+CA  + IL+QG MYL  H++CF SNI G+ T  +IP 
Sbjct:   466 RNKEFHQNFKKLPTKEKLIDDFSCAVSKDILVQGKMYLSDHYVCFNSNILGWVTNLVIPL 525

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
              EV  + +  TA +FPN I I    +KY FA+FLSRD  F LIT+ W
Sbjct:   526 QEVIQIEKKSTAVLFPNGIVIRTLHQKYVFATFLSRDSTFDLITNVW 572

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q59WE7 CaO19.11901 "Potential GRAM domain protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 270 (100.1 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 52/107 (48%), Positives = 72/107 (67%)

Query:    66 RSEEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
             R++E+ Q F+ LP++E L+ DF+CA  + IL+QG MYL  H++CF SNI G+ T  +IP 
Sbjct:   466 RNKEFHQNFKKLPTKEKLIDDFSCAVSKDILVQGKMYLSDHYVCFNSNILGWVTNLVIPL 525

Query:   125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
              EV  + +  TA +FPN I I    +KY FA+FLSRD  F LIT+ W
Sbjct:   526 QEVIQIEKKSTAVLFPNGIVIRTLHQKYVFATFLSRDSTFDLITNVW 572

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
cd13220	111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	4e-54
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	2e-20
cd13351	125	cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami	3e-17
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	3e-14
pfam02893	60	pfam02893, GRAM, GRAM domain	1e-12
cd13349	135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	2e-11
cd13217	100	cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and	2e-11
cd13350	135	cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family memb	6e-09
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	4e-07
cd13354	114	cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain fami	5e-07
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	4e-05

>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  175 bits (446), Expect = 4e-54
 Identities = 56/108 (51%), Positives = 74/108 (68%)

Query: 71  RQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAV 130
           +    LP +E L+ D++CA Q  ILLQG +Y+  + ICFYSNIFG+ETK +IPF ++T++
Sbjct: 1   KLFKSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSI 60

Query: 131 RRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGS 178
            + KTAG+FPNAI+I    +KYFFASFLSRD  F LIT  W       
Sbjct: 61  EKKKTAGLFPNAIQIETLTEKYFFASFLSRDSTFDLITRVWSNALLEK 108

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 87.3 bits (217), Expect = 2e-20
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 23/137 (16%)

Query: 58  EVQSSVTLRSEE----YRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNI 113
           EV   + LRS +    +++LF LP EE L+ DF CA +    LQG ++L    I FYSN+
Sbjct: 6   EVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIGFYSNL 65

Query: 114 FGFETKKIIPFYEVTAVRRAKTAGIFPN-AIEIF-------AAGK-----------KYFF 154
           FG +TK    + ++  ++ +  +    + +I I         A             K+ F
Sbjct: 66  FGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKPQDPEGRLKFHF 125

Query: 155 ASFLSRDEAFKLITDGW 171
            SF+S + AF+ I   W
Sbjct: 126 QSFVSFNHAFRTIMALW 142

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

>gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 35/101 (34%), Positives = 65/101 (64%), Gaps = 2/101 (1%)

Query: 67  SEEYRQLFRLPSEEVLVQDFNCAFQESIL-LQGHMYLFVHFICFYSNIFGFETKKIIPFY 125
           S ++ +LF +P EE LV  ++C++ +  +  QG +YL V+ +CFYS + G ETK +I + 
Sbjct: 2   SLKFHKLFGMPEEEKLVNYYSCSYWKGKVPRQGWLYLSVNHLCFYSFLLGKETKLVIRWT 61

Query: 126 EVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKL 166
           +VT + +  +  + P++I++    K+++F+ FL+  E FKL
Sbjct: 62  DVTQLEKNNSL-LLPDSIKVVTRDKEHYFSMFLNISETFKL 101

TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 125

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 20/60 (33%), Positives = 37/60 (61%)

Query: 75  RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAK 134
           +LP EE L+ D++C    +  +QG +Y+  + +CF SN+ G  TK +IP  ++T + ++ 
Sbjct: 1   KLPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 76  LPSEEVLVQDFNCAFQESI-LLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRR 132
           LP EE L+ D++C  Q  I  +QG +YL  + +CF S+ FG  T  +IP  ++  V +
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEK 58

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 69  EYRQLFRLPSEEVLVQDFNCAFQES-ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEV 127
           ++   F  P  E LV  ++C   +  +  QG +YL ++ +CFYS   G E K +IP+ EV
Sbjct: 14  KFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEV 73

Query: 128 TAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLI 167
             + R        + I +    K+  F+ FL+ DE F+++
Sbjct: 74  QKLERTSN-VFMTDTIRVTTQSKERDFSMFLNLDEVFRIM 112

TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 79  EEVLVQDFNCAFQES-ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG 137
           EE LV  ++C++ +  +  QG +YL ++ +CFYS + G E+K +I + E+T + ++    
Sbjct: 1   EEELVTSYSCSYWKGKVPRQGWLYLSLNHLCFYSFLLGSESKLVIRWTELTDIEKSGNTT 60

Query: 138 IFPNAIEIFAAGKKYFFASFLSRDEAFKLI 167
           I  + I+++    ++FF+ FL+  E FK +
Sbjct: 61  IKTSTIKVYTRSFEHFFSLFLNLSETFKAM 90

TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 100

>gnl|CDD|241504 cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 2/100 (2%)

Query: 69  EYRQLFRLPSEEVLVQDFNCAF-QESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEV 127
           ++ + F LP +E LV  ++C++ +  +  QG +YL  +F+ FYS + G E K II +  V
Sbjct: 14  KFEKCFGLPQQEKLVTYYSCSYWRGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDAV 73

Query: 128 TAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLI 167
           + + +     I   +I + + G+ ++F+ FL  +E F L+
Sbjct: 74  SKLEKTSNV-ILTESIHVCSQGEDHYFSMFLHINETFLLM 112

TBC1D8B may act as a GTPase-activating protein for Rab family protein(s). TBC1D8B contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 68  EEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEV 127
           + +R+ F LP  E L+  +    Q  + + G +Y+  ++ CF S + G  TK I+P  ++
Sbjct: 1   DRFRKHFALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDI 60

Query: 128 TAVRRAKT-----AGIFPNAIEIFAAGKKYF-FASFLSRDEAFKLI 167
             V + K      +G+    I I    + +F F+S  SRD+   L+
Sbjct: 61  ENVEKEKGFRFGYSGL---VIVIRGHEELFFEFSSAESRDDCEVLL 103

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241508 cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 73  LFRLPSEEVLVQDFNCAF---QESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTA 129
           LFRLP +E L    +C          + G +YL  ++ICF S +       +IP  EVT+
Sbjct: 1   LFRLPKDEKLDGSTDCTLWTPYNKRHVWGQLYLSQNYICFTSKVEDL-VSLVIPLREVTS 59

Query: 130 VRRAK-TAGIFPNAIEIFAAGKKYF-FASFLSRDEAFKLITD 169
           V +A  ++   PN I I    K  F FA    RD   + I+D
Sbjct: 60  VEKADSSSVRLPNGILITTKNKMTFLFAQIKDRDFLVQKISD 101

TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 114

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 79  EEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAV--RRAKTA 136
            E     + C F     ++G +YL  + + F S      T+  +P   ++ V      ++
Sbjct: 1   LEKKDVTYICPFH-VGPVEGTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSS 59

Query: 137 GIFPNAIEIFAAG-KKYFFASFLSRDEAFKLI 167
           G     +EI     +   FA F   D + + I
Sbjct: 60  GENSYGLEITCKDMRNLRFA-FKQEDHSRRDI 90

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
KOG1032	590	consensus Uncharacterized conserved protein, conta	100.0
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.75
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.66
KOG4347	671	consensus GTPase-activating protein VRP [General f	98.62
KOG1032	590	consensus Uncharacterized conserved protein, conta	98.23
PF14470	96	bPH_3: Bacterial PH domain	97.82
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	97.78
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	96.29
PF11696	642	DUF3292: Protein of unknown function (DUF3292); In	93.4
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	93.11
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	88.66
KOG4471	717	consensus Phosphatidylinositol 3-phosphate 3-phosp	86.27
PF06115	118	DUF956: Domain of unknown function (DUF956); Inter	85.82
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	85.38

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=100.00  E-value=6.5e-40  Score=348.69  Aligned_cols=309  Identities=29%  Similarity=0.453  Sum_probs=236.7

Q ss_pred             hHhhHHhhhhC--CCCCCCeeeEEEEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCc
Q 013482           64 TLRSEEYRQLF--RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN  141 (442)
Q Consensus        64 ~~~~~~f~~lF--~lp~~E~li~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pn  141 (442)
                      .....+|...+  ++|++|.|+.+|+|+|+|.|++|||||++++||||||++|||+++++|||++|+.|+|.++++++||
T Consensus       103 ~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn  182 (590)
T KOG1032|consen  103 LLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPN  182 (590)
T ss_pred             hhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCc
Confidence            55677777777  3999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCcccccccccCCCCCCCCccccccc
Q 013482          142 AIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIRE  221 (442)
Q Consensus       142 aI~I~t~~~~~~F~sF~~rd~~~~li~~~w~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~e~~~~~~~~~~s~~~~~~~~  221 (442)
                      +|+|.|...+|+|++|.+||.+|.+|..+-+......+..-    .       ..+....     .....+   ++.+++
T Consensus       183 ~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~----~-------~~~~l~~-----~~~~~~---~~~~~~  243 (590)
T KOG1032|consen  183 AIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPR----A-------DSDYLSS-----VEPEVN---DDQQGN  243 (590)
T ss_pred             ceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCcc----c-------cchhccc-----CCCCcC---cccccc
Confidence            99999999999999999999999988554433322111100    0       0000000     000000   000000


Q ss_pred             ccCCCCCCCCCCcCCCcccccCCCcccCccCccCCCCCCCCCCCCCCCC-----CCCCCCCCccceeeeeeEEecCHHHH
Q 013482          222 EDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIE-----NSDAPKIPECYTKVAETNFQMKVEDF  296 (442)
Q Consensus       222 ~~ls~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-----~~~~p~~~~~~~~v~e~~f~isv~~l  296 (442)
                      .+..   ..+..  .+                         ..++...+     +.. -..+...-++.+..|.+++..|
T Consensus       244 ~~~~---~~~s~--~~-------------------------~s~~~~~~e~~~~~~~-~~~~~~~~v~~~~~~s~~~~~~  292 (590)
T KOG1032|consen  244 VDNS---QSPSA--LQ-------------------------NSFDSPKEEELEHDFS-CSLSRLFGVLGRLPFSAPIGAF  292 (590)
T ss_pred             cccC---CCccc--cc-------------------------cccCCCcccccccccc-cccccccccccccccccccccc
Confidence            0000   00000  00                         00000000     000 0122233367889999999999


Q ss_pred             HhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEecCCe-EEEEEEE
Q 013482          297 YSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSH-LVIETSQ  375 (442)
Q Consensus       297 F~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~~~~~-~vVe~~~  375 (442)
                      |+++|+|+  .|+..+.+.++..++...+|.....+...|.++|++++..++|||.+.|..+|.+.+++... +.|..++
T Consensus       293 ~~~lf~d~--~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t  370 (590)
T KOG1032|consen  293 FSLLFGDN--TFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSET  370 (590)
T ss_pred             ceeeccCc--ceeeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhhee
Confidence            99999976  58888999999999999999988878899999999999999999999999999998887555 7788899


Q ss_pred             EeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeecccchhhHH
Q 013482          376 EVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLL  427 (442)
Q Consensus       376 ~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Kst~~K~~I~~  427 (442)
                      .+++||||++|+|.+||+|.|.+.   ..|+|+++.+|.|.|++|-++++++
T Consensus       371 ~~~~vps~~~f~v~~~y~i~~~~~---~~~~l~v~~~V~~~~~sw~~~~~~~  419 (590)
T KOG1032|consen  371 LTPDVPSGDSFYVKTRYLISRAGS---NSCKLKVSTSVEWTKSSWDVPVSEI  419 (590)
T ss_pred             ccCCccccceeeeeEEEEEEecCC---cceeecceeEEEeccCchhhccccc
Confidence            999999999999999999999865   6999999999999999999888854

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.75  E-value=8.6e-19  Score=136.96  Aligned_cols=67  Identities=39%  Similarity=0.910  Sum_probs=48.5

Q ss_pred             HHhhhhCCCCCCCeeeEEEEEEEee-cceeeeEEEEecceEEEEeccCCcee-EEEEeccccccccccc
Q 013482           68 EEYRQLFRLPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRAK  134 (442)
Q Consensus        68 ~~f~~lF~lp~~E~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~~~g~~~-k~~I~~~dI~~I~k~~  134 (442)
                      ++||++|+||.+|.|+.+|.|+|++ +++.+|+||||++||||+|+.++..+ +++|||.||.+|+|.+
T Consensus         1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~   69 (69)
T PF02893_consen    1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET   69 (69)
T ss_dssp             ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred             CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence            4799999999999999999999998 89999999999999999999999888 9999999999999863

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.66  E-value=1.9e-16  Score=120.68  Aligned_cols=59  Identities=32%  Similarity=0.649  Sum_probs=56.8

Q ss_pred             CCCCCCeeeEEEEEEEeecceeeeEEEEecceEEEEeccCCcee-EEEEecccccccccc
Q 013482           75 RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRA  133 (442)
Q Consensus        75 ~lp~~E~li~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~-k~~I~~~dI~~I~k~  133 (442)
                      +||++|+|+.+|.|+|+++++++||||||++||||+|+.+|+.+ +++||+.||.+|+|.
T Consensus         1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~   60 (61)
T smart00568        1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS   60 (61)
T ss_pred             CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence            48999999999999999999999999999999999999999988 999999999999986

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=98.62  E-value=2.2e-08  Score=105.87  Aligned_cols=105  Identities=27%  Similarity=0.417  Sum_probs=91.3

Q ss_pred             hHhhHHhhhhCCCCCCCeeeEEEEEEEee---cceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccC
Q 013482           64 TLRSEEYRQLFRLPSEEVLVQDFNCAFQE---SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFP  140 (442)
Q Consensus        64 ~~~~~~f~~lF~lp~~E~li~~f~Cal~~---~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~p  140 (442)
                      +.++++| .+|+||  |+|..+-.|.++.   +...+||||+|++|+||.|--.. -+.+++|+..|..|+|.+....++
T Consensus         7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~~   82 (671)
T KOG4347|consen    7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLFT   82 (671)
T ss_pred             hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccch
Confidence            5689999 999999  9999999999984   45689999999999999998654 579999999999999999778899


Q ss_pred             cEEEEEeCC-eEEEEeecCCHHHHHHHHHHHHH
Q 013482          141 NAIEIFAAG-KKYFFASFLSRDEAFKLITDGWL  172 (442)
Q Consensus       141 naI~I~t~~-~~~~F~sF~~rd~~~~li~~~w~  172 (442)
                      +.|.+.|.+ ..+.|..+.+|++.+--|...-.
T Consensus        83 ~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~~~  115 (671)
T KOG4347|consen   83 QLISLFTSNMVGMRFGGLTERLKLLSKLHLPPA  115 (671)
T ss_pred             hhhHHhhcCcceEEecchhhHHHHHHHHhchHh
Confidence            999998875 68999999999987766655433

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=98.23  E-value=1.6e-07  Score=101.33  Aligned_cols=258  Identities=16%  Similarity=0.218  Sum_probs=149.2

Q ss_pred             HhhHHhhhhCCCCCCCeeeEEEEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCc-EE
Q 013482           65 LRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AI  143 (442)
Q Consensus        65 ~~~~~f~~lF~lp~~E~li~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pn-aI  143 (442)
                      ..+..|+..|++|..|.+..+|.|.+.+...++|+++++-...||++.+||..+++...|+++..++-.......+. ++
T Consensus       248 ~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~  327 (590)
T KOG1032|consen  248 QSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGI  327 (590)
T ss_pred             CCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccc
Confidence            36778999999999999999999999999999999999999999999999999999999999999887765433321 22


Q ss_pred             EEEe--C-----------------CeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCccccccc
Q 013482          144 EIFA--A-----------------GKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKV  204 (442)
Q Consensus       144 ~I~t--~-----------------~~~~~F~sF~~rd~~~~li~~~w~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~e~~  204 (442)
                      ...+  .                 .+.+.|..+...   |+++........+   .    +....    ...-.+..   
T Consensus       328 ~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vp---s----~~~f~----v~~~y~i~---  390 (590)
T KOG1032|consen  328 LLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVP---S----GDSFY----VKTRYLIS---  390 (590)
T ss_pred             eeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCcc---c----cceee----eeEEEEEE---
Confidence            2211  0                 122233222221   2222221100000   0    00000    00000000   


Q ss_pred             ccCCCCCCCCcccccccccCCCCCCCCCCcCCCcccccCCCcccCccCccCCCCCCCCCCCCCCCCCCCCCCCCccceee
Q 013482          205 NCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKV  284 (442)
Q Consensus       205 ~~~~~~~~s~~~~~~~~~~ls~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~~~~~~~v  284 (442)
                                     +..+.           .....        ....+            .|....- .-.+.+.+.. 
T Consensus       391 ---------------~~~~~-----------~~~l~--------v~~~V------------~~~~~sw-~~~~~~~~~~-  422 (590)
T KOG1032|consen  391 ---------------RAGSN-----------SCKLK--------VSTSV------------EWTKSSW-DVPVSEIGSN-  422 (590)
T ss_pred             ---------------ecCCc-----------ceeec--------ceeEE------------EeccCch-hhcccccccc-
Confidence                           00000           00000        00000            0110000 0011111111 


Q ss_pred             eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe
Q 013482          285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY  364 (442)
Q Consensus       285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~  364 (442)
                         ..++.+ .+|+-+|++.  +-...-+...++..+.-++|.-...++..|+..|.---..++++....++..|...+.
T Consensus       423 ---~~k~lv-~~~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~i~~l~  496 (590)
T KOG1032|consen  423 ---TLKDLV-EILEKLLENG--EELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISPDKREVTLLQVVVLV  496 (590)
T ss_pred             ---chhhHH-HHHHHHHhcc--HHHHHhhcccccccccCCCccccCCCceeeeeccccccccccccccccceeEEEEEEe
Confidence               222222 3455567644  2234444455566666778995556788999998754555667777777777765544


Q ss_pred             -cCCeEEEEEEEEeCCCCCCCceEEEEEEE
Q 013482          365 -RNSHLVIETSQEVHDVPYGDYFRVEGLWD  393 (442)
Q Consensus       365 -~~~~~vVe~~~~~~dVPygD~F~ve~r~~  393 (442)
                       .+..|+++..+..+++|||++|.++.||.
T Consensus       497 ~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~  526 (590)
T KOG1032|consen  497 PLKILWLLNTILFLHDVPFGSYFEVHERYR  526 (590)
T ss_pred             hhhhhHHHHHHhhccCCCCccceeeehhhh
Confidence             44778899999999999999999999996

>PF14470 bPH_3: Bacterial PH domain

Probab=97.82  E-value=0.00046  Score=56.58  Aligned_cols=85  Identities=22%  Similarity=0.282  Sum_probs=71.3

Q ss_pred             CCCCCeeeEEEEEEEee-cceeeeEEEEecceEEEEecc-CCceeEEEEeccccccccccccccccCcEEEEEeCCeEEE
Q 013482           76 LPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNI-FGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYF  153 (442)
Q Consensus        76 lp~~E~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~~-~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~~~~~  153 (442)
                      |.++|.++....|.+.. .....|-+++|+..|-|+..- ++......|||++|.+|+..++  ++.+.|.|.++++.+.
T Consensus         1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g--~~~~~i~i~~~~~~~~   78 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG--ILGGKITIETNGEKIK   78 (96)
T ss_pred             CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc--ccccEEEEEECCEEEE
Confidence            56799999999999872 235679999999999999765 6678889999999999999874  5778999999999999


Q ss_pred             EeecCCHHHH
Q 013482          154 FASFLSRDEA  163 (442)
Q Consensus       154 F~sF~~rd~~  163 (442)
                      |.++ +.+++
T Consensus        79 i~~i-~k~~~   87 (96)
T PF14470_consen   79 IDNI-QKGDV   87 (96)
T ss_pred             EEEc-CHHHH
Confidence            9999 54443

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=97.78  E-value=8.6e-05  Score=62.64  Aligned_cols=86  Identities=20%  Similarity=0.347  Sum_probs=61.3

Q ss_pred             eeeEEEEEEEee-cceeeeEEEEecceEEEEec---------------cCCceeEEEEeccccccccccccccccCcEEE
Q 013482           81 VLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN---------------IFGFETKKIIPFYEVTAVRRAKTAGIFPNAIE  144 (442)
Q Consensus        81 ~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~---------------~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~  144 (442)
                      +++-.+.|.+.. .....|+|.|++++|+|..+               .-.......+|+++|..|.+..- .+-++||+
T Consensus         1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRy-llr~~AlE   79 (106)
T PF14844_consen    1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRY-LLRDTALE   79 (106)
T ss_dssp             --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEE-TTEEEEEE
T ss_pred             CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHh-cCcceEEE
Confidence            467789999985 56789999999999999976               22335668899999999998864 45689999


Q ss_pred             EEeCCeEEEEeecC---CHHHHHHHH
Q 013482          145 IFAAGKKYFFASFL---SRDEAFKLI  167 (442)
Q Consensus       145 I~t~~~~~~F~sF~---~rd~~~~li  167 (442)
                      |...+++=+|-.|.   .||++|+.|
T Consensus        80 iF~~dg~s~f~~F~~~~~R~~v~~~l  105 (106)
T PF14844_consen   80 IFFSDGRSYFFNFESKKERDEVYNKL  105 (106)
T ss_dssp             EEETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred             EEEcCCcEEEEEcCCHHHHHHHHHhh
Confidence            99876555555775   477777543

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=96.29  E-value=0.023  Score=48.02  Aligned_cols=89  Identities=18%  Similarity=0.296  Sum_probs=67.0

Q ss_pred             CeeeEEEEEEEee-cceeeeEEEEecceEEEEec----cCC-c---------eeEEEEeccccccccccccccccCcEEE
Q 013482           80 EVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN----IFG-F---------ETKKIIPFYEVTAVRRAKTAGIFPNAIE  144 (442)
Q Consensus        80 E~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~----~~g-~---------~~k~~I~~~dI~~I~k~~~~~~~pnaI~  144 (442)
                      |+++-+..|.+.. -.-..|+|=||.++|+|...    .+. .         .....+++++|..|-+..- .+-+.|++
T Consensus         1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRy-lLr~~alE   79 (108)
T cd01201           1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRY-LLQNTALE   79 (108)
T ss_pred             CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhh-hcccceEE
Confidence            5788889999985 45678999999999999952    121 1         1233799999999998864 46688999


Q ss_pred             EEeCCeEEEEeecCCHHHHHHHHHH
Q 013482          145 IFAAGKKYFFASFLSRDEAFKLITD  169 (442)
Q Consensus       145 I~t~~~~~~F~sF~~rd~~~~li~~  169 (442)
                      |.-.+..-+|-.|-+++.+.+.+..
T Consensus        80 iF~~d~~~~f~~F~~~~~~k~vv~~  104 (108)
T cd01201          80 LFLASRTSIFFAFPDQNAVKKVVYA  104 (108)
T ss_pred             EEEeCCceEEEEeCcHHHHHHHHhh
Confidence            9876655556689888877666653

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function

Probab=93.40  E-value=0.26  Score=53.64  Aligned_cols=83  Identities=17%  Similarity=0.374  Sum_probs=64.8

Q ss_pred             EEEEEEeecceeeeEEEEe----cceEEEEeccC------------CceeEEEEeccccccccccccccc----------
Q 013482           85 DFNCAFQESILLQGHMYLF----VHFICFYSNIF------------GFETKKIIPFYEVTAVRRAKTAGI----------  138 (442)
Q Consensus        85 ~f~Cal~~~i~~~GrlYis----~~~icF~S~~~------------g~~~k~~I~~~dI~~I~k~~~~~~----------  138 (442)
                      .|.|-|+++   .|.+||+    .=.|||.+.-.            .......||..||.+++|..+.+.          
T Consensus       520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~  596 (642)
T PF11696_consen  520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL  596 (642)
T ss_pred             eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence            699999875   4999998    55799986411            123458899999999999876541          


Q ss_pred             ----cCcEEEEE-eC-CeEEEEeecCCHHHHHHHHHHH
Q 013482          139 ----FPNAIEIF-AA-GKKYFFASFLSRDEAFKLITDG  170 (442)
Q Consensus       139 ----~pnaI~I~-t~-~~~~~F~sF~~rd~~~~li~~~  170 (442)
                          +-.|++|. +. ++.|.++....||+.|+.|..+
T Consensus       597 g~kEv~DGL~I~g~~~g~~y~lTA~~~RDeLFNRLiAm  634 (642)
T PF11696_consen  597 GEKEVVDGLVIVGDEPGQEYHLTAMPRRDELFNRLIAM  634 (642)
T ss_pred             CCcccccceEEeccCCCCEEEEEecchHHHHHHHHHhc
Confidence                22588888 54 7899999999999999988764

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=93.11  E-value=2.6  Score=38.06  Aligned_cols=129  Identities=15%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             eeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeee-eec-----CCCceeeeeEEE
Q 013482          286 ETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI-KVY-----FGAKFGSCKETQ  359 (442)
Q Consensus       286 e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl-~~~-----iGpk~t~~~e~Q  359 (442)
                      ...|+++++++|.+|.+.   .|++.-++..+..+..+..-....++ ....+.=..|- ..|     +-+..-.+.+++
T Consensus         4 ~~~~~~~~~~v~~~~~d~---~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e   79 (159)
T PF10698_consen    4 SVEYPAPVERVWAAFTDE---DYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE   79 (159)
T ss_pred             EEEcCCCHHHHHHHHcCH---HHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence            468999999999955544   48888888877766666666555443 22222222332 111     223334566666


Q ss_pred             EEEEecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeecccchhhHH
Q 013482          360 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLL  427 (442)
Q Consensus       360 ~i~~~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Kst~~K~~I~~  427 (442)
                      +..-.++..+........+    |....+.....++..+    .+|++.+.+.|+- |=.++.|||++
T Consensus        80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~----~gt~~~~~g~v~v-~VPlvGgkiE~  138 (159)
T PF10698_consen   80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG----GGTRLTVEGEVKV-KVPLVGGKIEK  138 (159)
T ss_pred             EEecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC----CCEEEEEEEEEEE-EEccccHHHHH
Confidence            6532345667666665555    5567799999998854    4788888887765 35678888865

The function is not known.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=88.66  E-value=1.3  Score=36.32  Aligned_cols=60  Identities=13%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             CCCCCe-eeEEEEEEEee---cc--eeeeEEEEecceEEEEeccCCceeEEEEecccccccccccc
Q 013482           76 LPSEEV-LVQDFNCAFQE---SI--LLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT  135 (442)
Q Consensus        76 lp~~E~-li~~f~Cal~~---~i--~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~  135 (442)
                      |-++|. +...-.+.|..   ++  .-.|++|+|.+.||+.-..-.....+.|++.+|..++...+
T Consensus        10 L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~g   75 (89)
T PF11605_consen   10 LEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAG   75 (89)
T ss_dssp             --TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-S
T ss_pred             cCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcc
Confidence            333444 44566777763   23  45899999999999986543333468999999999966643

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.27  E-value=2.8  Score=45.24  Aligned_cols=101  Identities=19%  Similarity=0.192  Sum_probs=70.7

Q ss_pred             hHHhhhhCCCCCCCee-eEEEEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCc--EE
Q 013482           67 SEEYRQLFRLPSEEVL-VQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN--AI  143 (442)
Q Consensus        67 ~~~f~~lF~lp~~E~l-i~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pn--aI  143 (442)
                      +......|.+=++|.+ -..|.|-+..  ...|.|+||+-.|.|.+.--+..-.+-+||.=|..|+|..++.-..|  +|
T Consensus        27 ~~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L  104 (717)
T KOG4471|consen   27 DENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGL  104 (717)
T ss_pred             cccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeE
Confidence            3346777874445555 4468888876  67899999999999998765555678899999999999874432223  78


Q ss_pred             EEEeCCe---EEEEeecCC-HHHHHHHHHH
Q 013482          144 EIFAAGK---KYFFASFLS-RDEAFKLITD  169 (442)
Q Consensus       144 ~I~t~~~---~~~F~sF~~-rd~~~~li~~  169 (442)
                      +|+.++.   +|-|..+.. |-+.|+.|.+
T Consensus       105 ~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~  134 (717)
T KOG4471|consen  105 EITCKDMRNLRCAFKQEEQCRRDWFERLNR  134 (717)
T ss_pred             EEEeccccceeeecCcccccHHHHHHHHHH
Confidence            8877654   566666664 4355555544

>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function

Probab=85.82  E-value=3.7  Score=35.29  Aligned_cols=78  Identities=22%  Similarity=0.261  Sum_probs=55.4

Q ss_pred             EEeecceeeeEEEEecceEEEEeccCCceeEEEEecccccccccccc--ccccCcEEEEEeCC-eEEEEeecCCHHHHHH
Q 013482           89 AFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT--AGIFPNAIEIFAAG-KKYFFASFLSRDEAFK  165 (442)
Q Consensus        89 al~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~--~~~~pnaI~I~t~~-~~~~F~sF~~rd~~~~  165 (442)
                      .....+.-+|++.|-.+=+=||... ..+--+.|||++|..|...-.  ...+|- ..|.|+. ++|.|++=-+. ++++
T Consensus        16 ts~~g~~~yGkimiGDkaFEFyn~~-n~~dyIQIPW~eI~~V~a~V~fkgk~I~R-F~I~Tk~~G~f~Fsskd~k-~~Lk   92 (118)
T PF06115_consen   16 TSYLGLGKYGKIMIGDKAFEFYNDR-NVEDYIQIPWEEIDYVIASVSFKGKWIPR-FAIFTKKNGKFTFSSKDSK-KVLK   92 (118)
T ss_pred             EEEecccccCeEEEcccceEeecCC-ChhhcEEeChhheeEEEEEEEECCCEEee-EEEEECCCCEEEEEECChH-HHHH
Confidence            3334566899999999999999764 235568999999999976543  134554 8888875 99999885443 3444


Q ss_pred             HHHH
Q 013482          166 LITD  169 (442)
Q Consensus       166 li~~  169 (442)
                      .|.+
T Consensus        93 ~~r~   96 (118)
T PF06115_consen   93 AIRK   96 (118)
T ss_pred             HHHH
Confidence            4443

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=85.38  E-value=19  Score=32.23  Aligned_cols=116  Identities=15%  Similarity=0.203  Sum_probs=69.2

Q ss_pred             eeeeeEEecCHHHHHhhhccCCchhHHHHHH-HHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEE
Q 013482          283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFH-RKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF  361 (442)
Q Consensus       283 ~v~e~~f~isv~~lF~llFsd~s~~f~~~~~-~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i  361 (442)
                      ...|...++++++||.++-.  ..+++.+.. +.....++.-+.|..   +|..|.++|..     -|| .  ..-.|++
T Consensus         6 ~~~E~~~~~~a~k~~ka~~~--~~~llpki~P~~i~sve~~eGdgg~---gGSIk~~~f~~-----~~~-~--~~~Kekv   72 (151)
T PF00407_consen    6 LEVEVEVKVSADKLWKAFKS--SPHLLPKILPHVIKSVEVVEGDGGP---GGSIKKWTFGP-----GGP-F--KYVKEKV   72 (151)
T ss_dssp             EEEEEEESS-HHHHHHHHTT--HHHHHHHHSTTTEEEEEEEESSSST---TT-EEEEEEET-----TSS-E--EEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhc--CccchhhhChhhceeEEEEccCCCC---CCeEEEEEecC-----CCC-c--ceeEEEE
Confidence            34577889999999998665  336666665 334455666788854   36899999964     233 2  3447888


Q ss_pred             EEecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482          362 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK  417 (442)
Q Consensus       362 ~~~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~K  417 (442)
                      ...+++...+..+..--| +.++|..-.....+.+.+.   ++|.++...  +|.+
T Consensus        73 e~~D~~~~~~~y~viEGd-~l~~~~~~~~~~~~~~~~~---g~~v~k~t~--~Ye~  122 (151)
T PF00407_consen   73 EAIDEENKTITYTVIEGD-VLGDYKSFKSTIQKIPKGD---GGCVVKWTI--EYEK  122 (151)
T ss_dssp             EEEETTTTEEEEEEEEET-TGTTTEEEEEEEEEEEETT---SCEEEEEEE--EEEE
T ss_pred             EeecCCCcEEEEEEEecc-ccccEEEEEEEEEecCCCC---CceEEEEEE--EEEe
Confidence            877666444555544344 3455555555555544332   457666554  4544

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 67/201 (33%)

Query: 39  DPPDRNVQFSTSPIPNGDVEVQSSV-TLRSEEYRQLFR----LP-----SEEVL------ 82
           D       +           ++SS+  L   EYR++F      P        +L      
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 83  -----VQDFNCAFQESILLQGH---MYLFVH-------------------FICFYSNIFG 115
                V        +  L++       + +                     +  Y+    
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 116 FETKKIIP------FYE-----VTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAF 164
           F++  +IP      FY      +  +   +   +F            +    FL +    
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFLDFRFLEQ---- 505

Query: 165 KLITDGWLQHGSGSLASAEQQ 185
           K+  D    + SGS+ +  QQ
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ 526

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	94.15
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	93.89
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	92.8
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	92.45
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	92.2
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	85.98
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	85.59
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	85.04
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	83.67
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	83.55
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	82.76
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	81.97
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	80.94
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	80.57

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=94.15  E-value=0.66  Score=49.74  Aligned_cols=98  Identities=10%  Similarity=-0.069  Sum_probs=63.5

Q ss_pred             hCCCCCCCeeeEEEEEEEe-e--cceeeeEEEEecceEEEEeccCCceeEEEEecccccccccccc---ccccCcEEEEE
Q 013482           73 LFRLPSEEVLVQDFNCAFQ-E--SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT---AGIFPNAIEIF  146 (442)
Q Consensus        73 lF~lp~~E~li~~f~Cal~-~--~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~---~~~~pnaI~I~  146 (442)
                      -|.|=++|.++..-.-.+. .  .-.+.|.||||..+|.|.+.--.....+-||+.-|..|+|..+   .+-.+..|.|.
T Consensus        78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~  157 (657)
T 1lw3_A           78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV  157 (657)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEE
T ss_pred             CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEE
Confidence            4664458888865333222 1  2468999999999999998532224467899999999999642   12235689999


Q ss_pred             eCCeEEEEeecCC----HHHHHHHHHHH
Q 013482          147 AAGKKYFFASFLS----RDEAFKLITDG  170 (442)
Q Consensus       147 t~~~~~~F~sF~~----rd~~~~li~~~  170 (442)
                      .++-+.+=-.|..    +.+.|..|.++
T Consensus       158 CKDfR~~~f~f~~~~~~~~~v~~~L~~~  185 (657)
T 1lw3_A          158 CKDIRNLRFAHKPEGRTRRSIFENLMKY  185 (657)
T ss_dssp             ETTTEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             ecCCcEEEEEeCCccchHHHHHHHHHHH
Confidence            9875433223432    44566666553

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=93.89  E-value=1.1  Score=38.73  Aligned_cols=97  Identities=18%  Similarity=0.181  Sum_probs=63.5

Q ss_pred             CCCCCeeeE-EEEEEEee----cceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcE-EEEEeC-
Q 013482           76 LPSEEVLVQ-DFNCAFQE----SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNA-IEIFAA-  148 (442)
Q Consensus        76 lp~~E~li~-~f~Cal~~----~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pna-I~I~t~-  148 (442)
                      |.++|.++. .=.+.|..    .-...|++|+|.+.|||...-- ....+.|||..|..++..... +..++ |.+.-. 
T Consensus        13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~-f~~s~Ki~l~l~~   90 (140)
T 2hth_B           13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAG-IGKSAKIVVHLHP   90 (140)
T ss_dssp             CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCT-TSSCCEEEEEECC
T ss_pred             cCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccc-cccCceEEEEecC
Confidence            556666554 34555552    3567899999999999986543 356799999999999998753 33221 222211 


Q ss_pred             -------------CeEEEEeecCC--HHHHHHHHHHHHHhc
Q 013482          149 -------------GKKYFFASFLS--RDEAFKLITDGWLQH  174 (442)
Q Consensus       149 -------------~~~~~F~sF~~--rd~~~~li~~~w~~~  174 (442)
                                   +..++=.+|.+  .++-+..|.+.+++.
T Consensus        91 ~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~~k  131 (140)
T 2hth_B           91 APPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQR  131 (140)
T ss_dssp             CCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             CCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHHHHh
Confidence                         23344456653  678888888877664

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=92.80  E-value=0.56  Score=40.74  Aligned_cols=96  Identities=7%  Similarity=-0.026  Sum_probs=61.3

Q ss_pred             CCCCeeeE-EEEEEEee-----cceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEE----
Q 013482           77 PSEEVLVQ-DFNCAFQE-----SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIF----  146 (442)
Q Consensus        77 p~~E~li~-~f~Cal~~-----~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~----  146 (442)
                      .++|.++. .=...|..     .-.-.|++|||.+.|||-..--.....+.+||..|.+++..... +..+ +.|.    
T Consensus        26 ~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~-fg~s-~Ki~l~~~  103 (145)
T 2cay_A           26 REGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRS-PRLILFFK  103 (145)
T ss_dssp             CTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSS-CEEEEEES
T ss_pred             CCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCc-cccC-ceEEEEec
Confidence            34555544 33444442     34578999999999999865432236789999999999998652 3344 3443    


Q ss_pred             --eCC---eEEEEeecCCHHHHHHHHHHHHHhcC
Q 013482          147 --AAG---KKYFFASFLSRDEAFKLITDGWLQHG  175 (442)
Q Consensus       147 --t~~---~~~~F~sF~~rd~~~~li~~~w~~~~  175 (442)
                        ..+   -|..|.+=.. ++-+..|.+.|++..
T Consensus       104 p~~~~~~~~KLsFk~GGa-~eF~~~l~~al~~~~  136 (145)
T 2cay_A          104 DPSSSTEFVQLSFRKSDG-VLFSQATERALENIL  136 (145)
T ss_dssp             SCSSTTCCEEEEESSSCC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEEEcCCCc-hHHHHHHHHHHHHHH
Confidence              122   3455544333 777788888887754

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=92.45  E-value=1.9  Score=45.11  Aligned_cols=96  Identities=10%  Similarity=-0.047  Sum_probs=61.6

Q ss_pred             CCCCCCCeeeEEEEEEEe-e--cceeeeEEEEecceEEEEeccCCceeEEEEecccccccccccc---ccccCcEEEEEe
Q 013482           74 FRLPSEEVLVQDFNCAFQ-E--SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT---AGIFPNAIEIFA  147 (442)
Q Consensus        74 F~lp~~E~li~~f~Cal~-~--~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~---~~~~pnaI~I~t  147 (442)
                      |.|=++|.++..-.-.+. .  .-.+.|.||||..+|.|.+.--.....+-||+.-|..|+|..+   .+-.+..|.|..
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~C   86 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVC   86 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEE
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEc
Confidence            454457877755332222 2  2368999999999999998532234568899999999999653   122356899999


Q ss_pred             CCeEEEEeecCC----HHHHHHHHHH
Q 013482          148 AGKKYFFASFLS----RDEAFKLITD  169 (442)
Q Consensus       148 ~~~~~~F~sF~~----rd~~~~li~~  169 (442)
                      ++-+.+=-.|..    +.+.|+.|.+
T Consensus        87 KDfr~~~f~f~~~~~~~~~v~~~L~~  112 (528)
T 1zsq_A           87 KDIRNLRFAHKPEGRTRRSIFENLMK  112 (528)
T ss_dssp             TTTEEEEEECCGGGCCHHHHHHHHHH
T ss_pred             cCCeEEEEEecCchHHHHHHHHHHHH
Confidence            875433223432    4445555544

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A

Probab=92.20  E-value=0.29  Score=49.70  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=58.8

Q ss_pred             eeEEEEEEEee-cceeeeEEEEecceEEEEecc----CC----------ceeEEEEeccccccccccccccccCcEEEEE
Q 013482           82 LVQDFNCAFQE-SILLQGHMYLFVHFICFYSNI----FG----------FETKKIIPFYEVTAVRRAKTAGIFPNAIEIF  146 (442)
Q Consensus        82 li~~f~Cal~~-~i~~~GrlYis~~~icF~S~~----~g----------~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~  146 (442)
                      ++-++.|.+.. .....|+|.||...|+|...-    |.          ......+++++|..|-+..- ...++||+|.
T Consensus         3 v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rry-ll~~~alEif   81 (414)
T 1t77_A            3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRY-LLQNTALEIF   81 (414)
T ss_dssp             CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEE-TTEEEEEEEE
T ss_pred             EEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeeec-cCcceeEEEE
Confidence            55678899874 678899999999999998521    10          01123689999999988754 4568999999


Q ss_pred             eCCeEEEEeecCCHHH
Q 013482          147 AAGKKYFFASFLSRDE  162 (442)
Q Consensus       147 t~~~~~~F~sF~~rd~  162 (442)
                      +.+++-+|-.|.+.+.
T Consensus        82 ~~~g~s~~l~F~~~~~   97 (414)
T 1t77_A           82 MANRVAVMFNFPDPAT   97 (414)
T ss_dssp             ETTSCEEEEECSSHHH
T ss_pred             EcCCcEEEEEcCCHHH
Confidence            8866556667887543

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=85.98  E-value=3.3  Score=43.14  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             cceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEeCCe-EEEEeecCCHHHHHHHHHHH
Q 013482           93 SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGK-KYFFASFLSRDEAFKLITDG  170 (442)
Q Consensus        93 ~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~~-~~~F~sF~~rd~~~~li~~~  170 (442)
                      ...+.|.||||..+|-|.+.   ....+-||+.-|..|+|.+... -...|.|..++- .+.| .|..-+++.++...+
T Consensus        22 ~~~~~GtL~lTn~~LiF~~~---~~~e~wi~~~~I~~VeK~~~~~-~~~~l~I~CKDfr~~~f-~f~~~~~~~~v~~sL   95 (512)
T 2yf0_A           22 NKSLTGTLYLTATHLLFIDS---HQKETWILHHHIASVEKLALTT-SGCPLVIQCKNFRTVHF-IVPRERDCHDIYNSL   95 (512)
T ss_dssp             --CCEEEEEECSSEEEEEES---SSCEEEEEGGGEEEEEECCCBT-TBEEEEEEETTSCEEEE-EESCHHHHHHHHHHH
T ss_pred             CCceeEEEEEECCEEEEeCC---CCCceEecccceeEEEEecCCC-CCceEEEEecCCcEEEE-EeCChHHHHHHHHHH
Confidence            34678999999999999983   2345789999999999975321 114688888874 3344 355444444444333

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=85.59  E-value=10  Score=32.86  Aligned_cols=117  Identities=13%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             eeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEE
Q 013482          284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR  362 (442)
Q Consensus       284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~-~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~  362 (442)
                      -.|.+.+++++++|.++..|-. ..+.+.+- .....++.-+.|.    .|..|.++|.      -|.+..  .-++++.
T Consensus         6 ~~ei~i~a~a~kvw~~~~~d~~-~l~pk~~P~~i~s~e~~eGdgg----~Gsir~~~~~------~g~~~~--~~kErl~   72 (159)
T 4a8u_A            6 ETEATSVIPAARLFKAFILDGD-NLFPKVAPQAISSVENIEGNGG----PGTIKKISFP------EGFPFK--YVKDRVD   72 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTCCEEEEEECSSS----TTCEEEEECC------TTSSCS--EEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCcc-ccchhhCchhccEEEEEcCCCC----CceEEEEEEe------cCCCcc--EEEEEEE
Confidence            3467889999999998866642 33444442 3344455567773    3689999875      133322  3457777


Q ss_pred             EecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482          363 VYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK  418 (442)
Q Consensus       363 ~~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks  418 (442)
                      ..++....+.-+..-.|++-..+=.....+.+.+.++   ++|.++..  +.|.+.
T Consensus        73 ~iD~~~~~~~y~iiegd~l~~~~~~y~~ti~v~p~~~---ggs~v~wt--~~y~~~  123 (159)
T 4a8u_A           73 EVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPN---GGSILKIN--NKYHTK  123 (159)
T ss_dssp             EEETTTTEEEEEEEEETTCBTTEEEEEEEEEEEECTT---SCEEEEEE--EEEEES
T ss_pred             EEccccCEEEEEEeeCCCCccceEEEEEEEEEEECCC---CceEEEEE--EEEEEC
Confidence            6655442333333223443111223444566666543   46765544  455543

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=85.04  E-value=18  Score=31.14  Aligned_cols=116  Identities=15%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482          284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV  363 (442)
Q Consensus       284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~  363 (442)
                      ..+.+++++++++|.++-.|-. +.+.+++......++.-+.|.    .|..|.++|. +     |.+...  -++++..
T Consensus         7 ~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eGdgg----~Gsir~~~~~-~-----g~~~~~--~kErl~~   73 (158)
T 2qim_A            7 QDEYTSTIAPAKLYKALVTDAD-IIIPKAVETIQSVEIVEGNGG----PGTIKKLTFI-E-----GGESKY--VLHKIEA   73 (158)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTEEEEEEEESSSS----TTCEEEEEEE-E-----TTEEEE--EEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCcc-chhhhHHhhCcEEEEEecCCC----CCeEEEEEEc-C-----CCccee--EEEEEEE
Confidence            4567899999999996553532 345666644444455567662    2679999986 1     332222  3466654


Q ss_pred             ecCCeEEEEEEEEeCCCCCCC-ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482          364 YRNSHLVIETSQEVHDVPYGD-YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK  418 (442)
Q Consensus       364 ~~~~~~vVe~~~~~~dVPygD-~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks  418 (442)
                      .++....+.-+..--|+ ..+ +=.....|.+.+.+.   ++|.++..  +.|.+.
T Consensus        74 ~D~~~~~~~y~iieG~~-~~~~~~~~~~~~~v~~~~~---~gs~v~wt--~~y~~~  123 (158)
T 2qim_A           74 IDEANLGYNYSIVGGVG-LPDTIEKISFETKLVEGAN---GGSIGKVT--IKIETK  123 (158)
T ss_dssp             EEGGGTEEEEEEEEESS-CCCSEEEEEEEEEEEECST---TCEEEEEE--EEEEES
T ss_pred             EecCCCEEEEEEEeccC-CccceEEEEEEEEEEecCC---CCEEEEEE--EEEEEC
Confidence            44433222222222232 222 334566777777543   36765544  455543

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=83.67  E-value=11  Score=32.63  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             eeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482          285 AETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV  363 (442)
Q Consensus       285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~-~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~  363 (442)
                      .|.+.++|+++||.++..|.. +++.+.+- ..+..++ -+.|    ..|..|.++|..      |.+.  ..-++++..
T Consensus         8 ~E~~~~v~a~kl~ka~v~d~~-~l~Pk~~P~~iks~~v-eGdg----~~Gsir~~t~~~------g~~~--~~~kErle~   73 (154)
T 2wql_A            8 LEITSSVSAEKIFSGIVLDVD-TVIPKAATGAYKSVEV-KGDG----GAGTVRIITLPE------GSPI--TTMTVRTDA   73 (154)
T ss_dssp             EEEEESSCHHHHHHHHTTTHH-HHHHHHSTTTCSEEEE-ESSS----STTCEEEEECCT------TCSC--CEEEEEEEE
T ss_pred             EEEEecCCHHHHHHHHhhccc-ccchhhcccceeEEEE-ECCC----CCCeEEEEEEcC------CCCc--eEEEEEEEE
Confidence            456789999999999888753 44555442 2233332 2333    236789988732      2222  234678876


Q ss_pred             ecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482          364 YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK  418 (442)
Q Consensus       364 ~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks  418 (442)
                      .++....+.-+..--|+....+=.+.....+.+.++   ++|.++.  .+.|.+.
T Consensus        74 iD~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~---ggsvvk~--t~~Y~~~  123 (154)
T 2wql_A           74 VNKEALSYDSTVIDGDILLGFIESIETHMVVVPTAD---GGSITKT--TAIFHTK  123 (154)
T ss_dssp             EETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTT---SCEEEEE--EEEEEES
T ss_pred             EehhhCEEEEEEEeccccccceEEEEEEEEEeeCCC---CcEEEEE--EEEEEEC
Confidence            766555555555545543333333445555666543   5776555  4556654

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=82.76  E-value=19  Score=30.88  Aligned_cols=117  Identities=11%  Similarity=0.051  Sum_probs=63.6

Q ss_pred             eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482          284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV  363 (442)
Q Consensus       284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~  363 (442)
                      ..+.+.+++++++|.++-.|-. +.+.+++......++.-+.|.    .|..|.++|.   .   |.+...  -++++..
T Consensus         6 ~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eG~g~----~Gsir~~~~~---~---G~~~~~--~kErl~~   72 (155)
T 1icx_A            6 ENEQSSTVAPAKLYKALTKDSD-EIVPKVIEPIQSVEIVEGNGG----PGTIKKIIAI---H---DGHTSF--VLHKLDA   72 (155)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHH-HHHHHHSTTEEEEEEEESSSS----TTCEEEEEEE---S---SSSEEE--EEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCcc-hhcchhhhhccEEEEEecCCC----CCeEEEEEEe---c---CCccee--EEEEEEE
Confidence            3567889999999996553532 345666644444455567662    2679999985   1   333222  3466664


Q ss_pred             ecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482          364 YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK  418 (442)
Q Consensus       364 ~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks  418 (442)
                      .++....+.-+..--|+.-..+=.....|.+.+.+.   ++|.++..+  .|.+.
T Consensus        73 ~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~---~gs~v~w~~--~y~~~  122 (155)
T 1icx_A           73 IDEANLTYNYSIIGGEGLDESLEKISYESKILPGPD---GGSIGKINV--KFHTK  122 (155)
T ss_dssp             EEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGG---GCEEEEEEE--EEEES
T ss_pred             EeccCCEEEEEEEecCCCccceEEEEEEEEEEecCC---CCEEEEEEE--EEEEC
Confidence            544333333332222332112334566777777542   357655544  55543

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=81.97  E-value=17  Score=31.23  Aligned_cols=114  Identities=8%  Similarity=0.093  Sum_probs=60.2

Q ss_pred             eeeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCceeEeccceecCCCceeeEEEEEeeeeecCC-CceeeeeEEEE
Q 013482          283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFG-AKFGSCKETQK  360 (442)
Q Consensus       283 ~v~e~~f~isv~~lF~llFsd~s~~f~~~~~~-~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iG-pk~t~~~e~Q~  360 (442)
                      ...+.+.+++++++|.++.+|-. .++.+++- .....++.-+.|.    .|..|.++|.     . | .+ .  .-.++
T Consensus         5 ~~~e~~i~a~a~kvw~~~v~d~~-~l~pk~~P~~i~s~~~~eGdgg----~Gsvr~~~~~-----~-g~~~-~--~~kEr   70 (155)
T 2flh_A            5 FNTQTELSVRLEALWAVLSKDFI-TVVPKVLPHIVKDVQLIEGDGG----VGTILIFNFL-----P-EVSP-S--YQREE   70 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHHTSCT-THHHHHCTTTEEEEEEEECSSS----TTCEEEEEEC-----T-TSSS-C--EEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcccc-cccchhccccceEEEEEcCCCC----CCeEEEEEee-----C-CCCC-c--EEEEE
Confidence            34567899999999998777754 44466552 2223344446652    3789999885     1 2 22 2  23466


Q ss_pred             EEEecCCeEEEEEEEEeCC---CCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482          361 FRVYRNSHLVIETSQEVHD---VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK  418 (442)
Q Consensus       361 i~~~~~~~~vVe~~~~~~d---VPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks  418 (442)
                      +...++....+.-+..--|   .||.+   ....+.+.+.+.   ++|.++  ..+.|.+.
T Consensus        71 l~~iD~~~~~~~y~iieg~~l~~~~~~---~~~~i~v~p~~~---ggs~v~--wt~~y~~~  123 (155)
T 2flh_A           71 ITEFDESSHEIGLQVIEGGYLSQGLSY---YKTTFKLSEIEE---DKTLVN--VKISYDHD  123 (155)
T ss_dssp             EEEEETTTTEEEEEEEEEGGGGTTCSE---EEEEEEEEEEET---TEEEEE--EEEEEEC-
T ss_pred             EEEEeCCCCEEEEEEEeccccccCceE---EEEEEEEEECCC---CCEEEE--EEEEEEEC
Confidence            6555443222222211112   36665   334455555432   467554  44556543

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=80.57  E-value=19  Score=30.96  Aligned_cols=117  Identities=16%  Similarity=0.114  Sum_probs=63.4

Q ss_pred             eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482          284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV  363 (442)
Q Consensus       284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~  363 (442)
                      ..+.+.+++++++|.++-.|-. +.+.+++......++.-+.|.    .|..|.++|.   .   |.+..  .-++++..
T Consensus         6 ~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eG~g~----~Gsir~~~~~---~---G~~~~--~~kErl~~   72 (157)
T 1tw0_A            6 RDETSSSVAPAKLYKALTKDSD-TIAQKIDGPIQSIELVEGNGG----VGTIKKITAN---E---GDKTS--FVLQKVDA   72 (157)
T ss_dssp             EEEEEESSCHHHHHHHHHHTGG-GGGGGSCSSEEEEEEEESSSS----TTCEEEEEEE---E---TTEEE--EEEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCcc-hhhhhHHhhccEEEEEeCCCC----CCeEEEEEee---C---CCccc--eEEEEEEE
Confidence            4567889999999996553432 233444433334444556662    2679999986   1   33222  23566665


Q ss_pred             ecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482          364 YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK  418 (442)
Q Consensus       364 ~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks  418 (442)
                      .++....+.-+..--|+.-..+=.....|.+.+.+.   ++|.++..  +.|.+.
T Consensus        73 ~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~---~gs~v~w~--~~y~~~  122 (157)
T 1tw0_A           73 IDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSG---GGSISKVT--LKFHTK  122 (157)
T ss_dssp             EETTTTEEEEEEEECTTSCTTEEEEEEEEEEEECSS---SSEEEEEE--EEEEES
T ss_pred             EeccCCEEEEEEEecCCCccceEEEEEEEEEEecCC---CCEEEEEE--EEEEEC
Confidence            554443333333333432112334566777777543   36765554  455543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	96.9
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.91
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	92.35
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	91.53
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	90.8
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	89.8
d1fm4a_	159	Major tree pollen allergen {European white birch (	88.65
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	86.86
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	86.1
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	84.45
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	83.84
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	83.67

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0012  Score=53.17  Aligned_cols=86  Identities=14%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             eeEEEEEEEee-cceeeeEEEEecceEEEEeccC--------------CceeEEEEeccccccccccccccccCcEEEEE
Q 013482           82 LVQDFNCAFQE-SILLQGHMYLFVHFICFYSNIF--------------GFETKKIIPFYEVTAVRRAKTAGIFPNAIEIF  146 (442)
Q Consensus        82 li~~f~Cal~~-~i~~~GrlYis~~~icF~S~~~--------------g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~  146 (442)
                      ++-.-.|.|.. ..-..|++.||+++|+|...-.              .......+++++|..|-+..- ..-++||+|.
T Consensus         3 v~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~-ll~~~alEif   81 (110)
T d1t77a2           3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRY-LLQNTALEIF   81 (110)
T ss_dssp             CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEE-TTEEEEEEEE
T ss_pred             EEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhh-cCCceEEEEE
Confidence            45677899984 5678999999999999987311              012335799999999998753 4568999999


Q ss_pred             eCCeEEEEeecCCHHHHHHHHH
Q 013482          147 AAGKKYFFASFLSRDEAFKLIT  168 (442)
Q Consensus       147 t~~~~~~F~sF~~rd~~~~li~  168 (442)
                      +.+++=+|-.|.+.+..-+.+.
T Consensus        82 ~~~~~s~~~~F~~~~~~~~v~~  103 (110)
T d1t77a2          82 MANRVAVMFNFPDPATVKKVVN  103 (110)
T ss_dssp             ETTSCEEEEECSSHHHHHHHHH
T ss_pred             EcCCcEEEEEeCCHHHHHHHHH
Confidence            8765555557988655444444

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.038  Score=44.89  Aligned_cols=71  Identities=13%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             CCCeeeEE-----EEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEecccccccccccccc---ccCcEEEEEeCC
Q 013482           78 SEEVLVQD-----FNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG---IFPNAIEIFAAG  149 (442)
Q Consensus        78 ~~E~li~~-----f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~---~~pnaI~I~t~~  149 (442)
                      ++|.++..     |-|.+.  -++.|.||||+.+|.|.+.--.....+-||+.-|..|+|.....   --+.+|+|..++
T Consensus         7 pGE~i~~~~~~V~~~~p~~--~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKD   84 (125)
T d1zsqa1           7 PGENIKDMAKDVTYICPFT--GAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD   84 (125)
T ss_dssp             TTCCEEEEEEEEEEEETTT--EEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT
T ss_pred             CCcEEEEeeccEEEEccCC--CccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEecc
Confidence            57877764     344332  36789999999999999765554556789999999999864322   234589999887


Q ss_pred             e
Q 013482          150 K  150 (442)
Q Consensus       150 ~  150 (442)
                      .
T Consensus        85 f   85 (125)
T d1zsqa1          85 I   85 (125)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=92.35  E-value=0.64  Score=38.24  Aligned_cols=115  Identities=16%  Similarity=0.113  Sum_probs=68.6

Q ss_pred             eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe
Q 013482          285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY  364 (442)
Q Consensus       285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~  364 (442)
                      .|.+.++|+++||.+++.|.. .+...+-......++.-+.|.    .|..|.++|..      |.+  ....+|++...
T Consensus         7 ~E~~~~v~a~k~~ka~~~d~~-~l~~~~p~~i~s~e~~eGdg~----~GsIr~~~~~~------g~~--~~~~kErl~~i   73 (147)
T d1txca1           7 DETSSSVAPAKLYKALTKDSD-TIAQKIDGPIQSIELVEGNGG----VGTIKKITANE------GDK--TSFVLQKVDAI   73 (147)
T ss_dssp             EEEEESSCHHHHHHHHHTTHH-HHHHHTTSSEEEEEEEESSSS----TTCEEEEEEEE------TTE--EEEEEEEEEEE
T ss_pred             EEEeccCCHHHHHHhhhcccc-cCccccccccccceeecCCCC----cceEEEEEEcC------CCc--ceEEEEEEEEE
Confidence            356778899999998888753 333332222223344344442    36789999863      222  22446888766


Q ss_pred             cCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482          365 RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK  417 (442)
Q Consensus       365 ~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~K  417 (442)
                      ++....+.-+..--|++...+-+......+...+.   ++|.+  ...+.|.+
T Consensus        74 D~~~~~~~y~iiEGd~l~~~~~s~~~~~~~~~~~~---ggs~v--kw~~~y~~  121 (147)
T d1txca1          74 DEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSG---GGSIS--KVTLKFHT  121 (147)
T ss_dssp             EGGGTEEEEEEEESTTSCTTEEEEEEEEEEEECST---TCEEE--EEEEEEEE
T ss_pred             ccCCcEEEEEEEccCccccceEEEEEEEEEecCCC---CCcEE--EEEEEEEE
Confidence            66555555555556777776656666666665543   47764  55566653

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=91.53  E-value=0.72  Score=38.47  Aligned_cols=115  Identities=10%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             eeeEEecCHHHHHhhhccCCchhHHHHHH-HHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482          285 AETNFQMKVEDFYSLFFSDDTVNFIESFH-RKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV  363 (442)
Q Consensus       285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~-~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~  363 (442)
                      .|...++|+++||.+|+.|.. +++.+.+ ......++.-+.|.+    |..|.++|..      |.+.  -..+|++..
T Consensus         7 ~E~~~~vpa~k~~k~~~~d~~-~l~pk~~p~~i~~ie~~eGdg~~----GsIr~~~~~~------~~~~--~~~KErie~   73 (159)
T d1e09a_           7 SEFTSEIPPPRLFKAFVLDAD-NLVPKIAPQAIKHSEILEGDGGP----GTIKKITFGE------GSQY--GYVKHKIDS   73 (159)
T ss_dssp             EEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTEEEEEEEESSSST----TCEEEEEECC------SSSC--EEEEEEEEE
T ss_pred             EEEeecCCHHHHHHHHhcChh-hcCcccCCcceeEEEEEcCCCCc----CcEEEEEEcC------CCCc--EEEEEEEEE
Confidence            356778999999999988753 4444443 223445555677742    6789998842      3332  234688876


Q ss_pred             ecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482          364 YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK  417 (442)
Q Consensus       364 ~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~K  417 (442)
                      .++....+.-+..--|+....|=++.....+...+.   ++|.++..+.  |.+
T Consensus        74 iD~~~~~~~y~viEGd~l~~~~~s~~~~~~~~~~~~---~g~vvkwt~e--Ye~  122 (159)
T d1e09a_          74 IDKENYSYSYTLIEGDALGDTLEKISYETKLVASPS---GGSIIKSTSH--YHT  122 (159)
T ss_dssp             EETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTT---SSEEEEEEEE--EEE
T ss_pred             EcccccEEEEEEEecccccccEEEEEEEEEEccCCC---CCcEEEEEEE--EEE
Confidence            666555555555545665443323333333433322   5788666654  554

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=90.80  E-value=1.5  Score=36.30  Aligned_cols=115  Identities=12%  Similarity=0.047  Sum_probs=70.1

Q ss_pred             eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe
Q 013482          285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY  364 (442)
Q Consensus       285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~  364 (442)
                      .|...++|+++||.+++.|.. .++.+........++.-+.    ...|..|.++|..      |.+  ...-+|++...
T Consensus         7 ~E~~~~v~a~k~fka~~~d~~-~l~pk~p~~i~s~e~~eGd----G~~GsIr~~~~~~------g~~--~~~~Kerie~v   73 (157)
T d1xdfa1           7 DESTSTIAPARLYKALVKDAD-AIIPKAVEAIQSIETVEGN----GGPGTIKKLTLIE------GGE--TKYVLHKIEAV   73 (157)
T ss_dssp             EEEEESSCHHHHHHHHHHSHH-HHHHHHCTTEEEEEEEESS----SSTTCEEEEEEEE------TTE--EEEEEEEEEEE
T ss_pred             EEEeccCCHHHHHHHHhhchh-hccccchhheecceeecCC----CCCCcEEEEEEcC------CCc--cEEEEEEEEEE
Confidence            456778999999998887763 4555554333333333332    2347889998852      222  23457898866


Q ss_pred             cCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482          365 RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK  417 (442)
Q Consensus       365 ~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~K  417 (442)
                      +++..++.-+..--|+-...+-++.....+...+.   ++|.++..+.  |.+
T Consensus        74 D~e~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~---ggsv~k~t~e--Ye~  121 (157)
T d1xdfa1          74 DEANLRYNYSIVGGVGLPDTIEKISFETKLVEGAN---GGSIGKVTIK--IET  121 (157)
T ss_dssp             EGGGTEEEEEEESSTTSCTTEEEEEEEEEEEECTT---SSEEEEEEEE--EEE
T ss_pred             echhcEEEEEEEecccccccEEEEEEEEEEEcCCC---CceEEEEEEE--EEE
Confidence            66655666665544444444556666777776553   5787666554  554

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.80  E-value=0.23  Score=40.33  Aligned_cols=94  Identities=10%  Similarity=0.087  Sum_probs=56.0

Q ss_pred             CCCeeeE-EEEEEEee---cc--eeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEe----
Q 013482           78 SEEVLVQ-DFNCAFQE---SI--LLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFA----  147 (442)
Q Consensus        78 ~~E~li~-~f~Cal~~---~i--~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t----  147 (442)
                      ++|.++- .=.+.|.-   ++  .-.|++|+|.+.|||-..--.....+.||+..|..++-...  +|...-+|.-    
T Consensus        19 ~~E~~l~~qd~V~Ly~g~~k~~~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~--~~~ss~KI~l~l~~   96 (130)
T d2caya1          19 EGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSG--FLTRSPRLILFFKD   96 (130)
T ss_dssp             TTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECS--SSSSSCEEEEEESS
T ss_pred             CCeEEEEEeCCEEEEECCccCccccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEcc--ccCCCCeEEEEeCC
Confidence            3454433 33455542   23  46899999999999987543233469999999999987654  3433323321    


Q ss_pred             --CCeEEEEeecCCH--HHHHHHHHHHHHh
Q 013482          148 --AGKKYFFASFLSR--DEAFKLITDGWLQ  173 (442)
Q Consensus       148 --~~~~~~F~sF~~r--d~~~~li~~~w~~  173 (442)
                        .+..|+=.||...  .+-++.+.+.+.+
T Consensus        97 ~~~~~~~vklsFr~gg~~~F~~~~~~~~~~  126 (130)
T d2caya1          97 PSSSTEFVQLSFRKSDGVLFSQATERALEN  126 (130)
T ss_dssp             CSSTTCCEEEEESSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEcCCChHHHHHHHHHHHHH
Confidence              1334444566543  2445666665543

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=88.65  E-value=3  Score=34.40  Aligned_cols=112  Identities=11%  Similarity=0.134  Sum_probs=64.6

Q ss_pred             eeeEEecCHHHHHhhhccCCchhHHHHHH-HHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482          285 AETNFQMKVEDFYSLFFSDDTVNFIESFH-RKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV  363 (442)
Q Consensus       285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~-~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~  363 (442)
                      .|...++|+++||.+++.|.. .++.+.+ ......++.-+.|.    .|..|.++|.      .|.+.  ...+|++..
T Consensus         7 ~E~~~~v~a~k~~k~~~~d~~-~l~pk~~p~~i~~ie~~eGdg~----~GsIr~~~~~------~~~~~--~~~Kerve~   73 (159)
T d1fm4a_           7 TEATSVIPAARMFKAFILDGD-KLVPKVAPQAISSVENIEGNGG----PGTIKKINFP------EGFPF--KYVKDRVDE   73 (159)
T ss_dssp             EEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTCCEEEEEECSSS----TTCEEEEECC------TTSSS--SEEEEEEEE
T ss_pred             EEeeccCCHHHHHHHHHhCcc-cccccccCcceEEEEEECCCCC----CCCEEEEEec------CCCCc--eEEEEEEEE
Confidence            355678899999999887753 4455543 22334444455553    2678988863      23332  244688876


Q ss_pred             ecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEE
Q 013482          364 YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVN  412 (442)
Q Consensus       364 ~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~  412 (442)
                      .++....+.-+..--|+.-..+=+......+...+.   ++|.++..+.
T Consensus        74 iD~~~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~---gg~v~kwt~e  119 (159)
T d1fm4a_          74 VDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPD---GGCVLKISNK  119 (159)
T ss_dssp             EETTTTEEEEEEEEBTTBTTTEEEEEEEEEEEECTT---SCEEEEEEEE
T ss_pred             EcccccEEEEEEEeccccccceEEEEEEEEEecCCC---CceEEEEEEE
Confidence            666555555554445544344334444455555543   5787666544

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.86  E-value=1.4  Score=35.20  Aligned_cols=96  Identities=18%  Similarity=0.172  Sum_probs=58.8

Q ss_pred             CCCCCeeeEEEE-EEEe-e---cceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEe---
Q 013482           76 LPSEEVLVQDFN-CAFQ-E---SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFA---  147 (442)
Q Consensus        76 lp~~E~li~~f~-Cal~-~---~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t---  147 (442)
                      |..+|.++..-. -.|. .   .-...|++|+|++.|+|-...-. ...+.||+..|..++.... .+..|+-.+..   
T Consensus         9 l~~~E~~l~~~~~V~lydG~~k~~~~~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~-~fg~s~ki~l~l~~   86 (129)
T d2hthb1           9 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAA-GIGKSAKIVVHLHP   86 (129)
T ss_dssp             CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECC-TTSSCCEEEEEECC
T ss_pred             CCCCcEEEEEeCCEEeecCCCcccccceEEEEEeceEEEecCCCC-ceEEEEEhHHceeeeEEcc-cccCCceEEEEEcc
Confidence            455666654322 2233 1   23457999999999999865433 4678999999999998765 34455332221   


Q ss_pred             ------------CCeEEEEeecCC--HHHHHHHHHHHHHh
Q 013482          148 ------------AGKKYFFASFLS--RDEAFKLITDGWLQ  173 (442)
Q Consensus       148 ------------~~~~~~F~sF~~--rd~~~~li~~~w~~  173 (442)
                                  .+..|+=.+|.+  -++-++.+.+.|++
T Consensus        87 ~~~~~~~gp~~~s~~~~~KLsFk~GG~~eF~~~l~~al~~  126 (129)
T d2hthb1          87 APPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQ  126 (129)
T ss_dssp             CCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             CCcCCcCCCcCcCCceEEEEEECCCCHHHHHHHHHHHHHh
Confidence                        012334356654  35566777776654

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=86.10  E-value=4.3  Score=31.48  Aligned_cols=108  Identities=13%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             eeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe-
Q 013482          286 ETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY-  364 (442)
Q Consensus       286 e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~-  364 (442)
                      +.+++++++++|.+| .|-  .-+.++           -||-..-.-....  .|..-+...+||-.....-.-++... 
T Consensus         6 ~~~i~~~~e~v~~~l-~D~--~~~~~~-----------~Pg~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~   69 (147)
T d2pcsa1           6 SIELKGTVEEVWSKL-MDP--SILSKC-----------IMGCKSLELIGED--KYKADLQIGIAAVKGKYDAIIEVTDIK   69 (147)
T ss_dssp             EEEEESCHHHHHHHH-TCH--HHHHHH-----------STTEEEEEEEETT--EEEEEEEECCGGGCEEEEEEEEEEEEE
T ss_pred             eEEeCCCHHHHHHHH-cCH--HHHHhh-----------CcchhhceecCCC--EEEEEEEEeecceeeeeEEEEEEeccC
Confidence            457899999999966 552  222322           3554321100011  24444444456644433333333333 


Q ss_pred             cCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 013482          365 RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS  416 (442)
Q Consensus       365 ~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~  416 (442)
                      ....+.+......    .+..+.....|.+...++   ++|+|.+.+.+.|.
T Consensus        70 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~T~v~~~~~~~~~  114 (147)
T d2pcsa1          70 PPYHYKLLVNGEG----GPGFVNAEGVIDLTPIND---ECTQLTYTYSAEVG  114 (147)
T ss_dssp             TTTEEEEEEEEEE----TTEEEEEEEEEEEEESSS---SEEEEEEEEEEEEE
T ss_pred             cccceeEeecccc----ccchhcceeEEeeecccC---CcEEEEEEEEEEEC
Confidence            3344433333222    355666777787776654   68999999999985

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=84.45  E-value=4.8  Score=32.98  Aligned_cols=112  Identities=11%  Similarity=0.048  Sum_probs=66.0

Q ss_pred             eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe
Q 013482          285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY  364 (442)
Q Consensus       285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~  364 (442)
                      .|...++|+++||.+++.|.. .++.+++......++..+.    ..-|..|.++|..      |.+.  -..++++...
T Consensus         7 ~E~~~~v~a~klfka~~~d~~-~l~pk~~~~i~s~e~~eGd----Gg~GsIk~~~~~~------~~~~--~~~Kerie~i   73 (155)
T d1icxa_           7 NEQSSTVAPAKLYKALTKDSD-EIVPKVIEPIQSVEIVEGN----GGPGTIKKIIAIH------DGHT--SFVLHKLDAI   73 (155)
T ss_dssp             EEEEESSCHHHHHHHHTTTHH-HHHHHHSTTEEEEEEEESS----SSTTCEEEEEEES------SSSE--EEEEEEEEEE
T ss_pred             EeEEecCCHHHHhhhheeccc-hhchhhhhheeeeeEecCC----CccceEEEEEecc------CCce--EEEEEEEEEE
Confidence            356788999999999987764 5666665433333333332    1236889998853      3332  2346888766


Q ss_pred             cCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEE
Q 013482          365 RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVN  412 (442)
Q Consensus       365 ~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~  412 (442)
                      +++...+.-+..--|+-...+-++.....+.+.+.   ++|.++..+.
T Consensus        74 D~en~~~~y~viEGd~l~~~~~~~~~~~k~~~~~~---~g~i~k~t~e  118 (155)
T d1icxa_          74 DEANLTYNYSIIGGEGLDESLEKISYESKILPGPD---GGSIGKINVK  118 (155)
T ss_dssp             EGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGG---GCEEEEEEEE
T ss_pred             cccccEEEEEEEecccccccEEEEEEEEEEecCCC---CCeEEEEEEE
Confidence            66555555555555654444445555555555443   4677655544

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=83.84  E-value=6.2  Score=32.19  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=69.6

Q ss_pred             eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482          284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV  363 (442)
Q Consensus       284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~  363 (442)
                      ..|...++|+++||.++..|.. ..+.+.+-.. .+.+.+..|.   ..|..|.++|..     -|| .  ...++++..
T Consensus         6 e~E~~~~v~a~k~~ka~~~d~~-~l~Pk~~P~~-i~sveveGdG---~~GsIr~~~~~~-----~~~-~--~~~Kerve~   72 (153)
T d2bk0a1           6 VLELTSSVSAEKIFQGFVIDVD-TVLPKAAPGA-YKSVEIKGDG---GPGTLKIITLPD-----GGP-I--TTMTLRIDG   72 (153)
T ss_dssp             EEEEEESSCHHHHHHHHTTSHH-HHHHHHCGGG-CSEEEEESSS---STTCEEEEECCT-----TSS-C--CEEEEEEEE
T ss_pred             EEEEeccCCHHHHHHHHhhccc-ccccccccce-eeEEEEECCC---CCCeEEEEEEec-----Ccc-c--eeeEEEEEE
Confidence            4577889999999998777753 4556655321 2223344552   337889888831     233 2  244688875


Q ss_pred             ecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482          364 YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK  417 (442)
Q Consensus       364 ~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~K  417 (442)
                      .++....+.-+..--|+...-|=++...+.+...+.   ++|.++..  +.|.+
T Consensus        73 iD~~~~~~~y~viEGd~l~~~y~s~~~~~~~~~~~~---ggsv~k~t--~eYe~  121 (153)
T d2bk0a1          73 VNKEALTFDYSVIDGDILLGFIESIENHVVLVPTAD---GGSICKTT--AIFHT  121 (153)
T ss_dssp             EETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTT---SCEEEEEE--EEEEE
T ss_pred             EecCccEEEEEEEecccccccEEEEEEEEEEecCCC---CCeEEEEE--EEEEE
Confidence            665555555555545554454556666677777643   57876654  45554

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=6.7  Score=30.20  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=46.9

Q ss_pred             CCCeeeEEEEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEeC-CeEEEE
Q 013482           78 SEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA-GKKYFF  154 (442)
Q Consensus        78 ~~E~li~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~-~~~~~F  154 (442)
                      ..|.|+..=.-.+.+   ..|.|||++.+|-|-.+- +-...+.++|.+|...+-.+...-= -.++|... +..|.|
T Consensus         5 s~~vll~v~~v~yKK---~~GtL~l~~d~l~W~p~~-~~~~~v~~~~~~I~~~q~Spe~s~K-v~Lkiv~~~~~s~~F   77 (108)
T d2rnrb1           5 SEEVLLIVKKVRQKK---QDGALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEGKAK-IQLQLVLHAGDTTNF   77 (108)
T ss_dssp             CCCCCEEEEEEEESS---CEEEEEECSSEEEEEESS-CSSCSEEEETTTEEEEEECCTTCSS-EEEEEEETTSCEEEE
T ss_pred             hhhheeeecceEEec---CCcEEEEEcCeEEEEcCC-CCCceEEEEhhhhhceecCCCCccc-ceeEEEEeCCCeEEE
Confidence            456665555555544   359999999999999874 3345689999999987655432110 14666654 444555